MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-18 18:29:09 PST
Job id & description: 1691, igcpyd4
Query type: protein
Count queries & homologs: 71, 78
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
158499257-stool1_revised3916611Lack 5'-endK01580COG0076unknownunknown100.0100.0100.0
O2.UC48-1_GL02232553930102CompleteK01618COG0076unknownunknown100.0100.0100.0
158458797-stool1_revised3977386CompleteK01580COG0076unknownunknown100.0100.0100.0
158256496-stool1_revised4081789Lack 5'-endK01580COG0076unknownunknown100.0100.0100.0
HT14A_GL00109684060542Lack 3'-endK01580COG0076unknownunknown100.0100.0100.0
158458797-stool1_revised4165751Lack 5'-endK01580COG0076unknownunknown100.0100.0100.0
V1.UC11-5_GL00981824182957Lack 3'-endK01593COG0076unknownunknown100.0100.0100.0
MH0257_GL00016014130345Lack both endsunknownCOG0076unknownunknown100.0100.0100.0
159247771-stool1_revised4188116Lack both endsK01580COG0076unknownunknown100.0100.0100.0
MH0267_GL00858174195388Lack 5'-endK01580COG0076BacteroidetesBacteroides100.0100.0100.0
T2D-46A_GL00001284251883Lack both endsK01580COG0076unknownunknown100.0100.0100.0
V1.FI03_GL01084434311715Lack both endsK01580COG0076unknownunknown100.0100.0100.0
MH0206_GL02017744215603Lack 5'-endK01580COG0076Bacteroidetesunknown100.0100.0100.0
MH0267_GL00245034259693Lack both endsK01580COG0076BacteroidetesBacteroides100.0100.0100.0
159247771-stool1_revised4274273Lack 3'-endK01580COG0076Bacteroidetesunknown100.0100.0100.0
V1.CD3-0-PN_GL00402074355115Lack 3'-endK01593COG0076FirmicutesBlautia100.0100.0100.0
V1.UC31-0_GL00261594335176CompleteK13745COG0076unknownunknown100.0100.0100.0
T2D-132A_GL00372714294395Lack 5'-endK13745COG0076ProteobacteriaEnterobacter100.0100.0100.0
NLM023_GL00565614448497Lack both endsK04487COG1104FirmicutesFaecalibacterium100.0100.0100.0
O2.CD3-0-PT_GL00702784418726Lack both endsK01593COG0076unknownunknown100.0100.0100.0
V1.FI18_GL00571274539039Lack both endsK01593COG0076unknownunknown100.0100.0100.0
V1.CD3-0-PT_GL00367694467449Lack 5'-endK01580COG0076unknownunknown100.0100.0100.0
O2.UC28-0_GL00662434511932Lack 3'-endK01580COG0076Bacteroidetesunknown100.0100.0100.0
MH0169_GL00933024434067Lack both endsK00839COG0075unknownunknown100.0100.0100.0
O2.UC57-2_GL01252834584322Lack both endsK01580COG0076BacteroidetesBacteroides100.0100.0100.0
MH0319_GL01534934601742Lack both endsK01580COG0076unknownunknown100.0100.0100.0
763840445-stool2_revised4665620Lack 3'-endK13745COG0076unknownunknown100.0100.0100.0
MH0377_GL01252724700339Lack 5'-endK01580COG0076unknownunknown100.0100.0100.0
ED19A_GL00191744760683Lack 3'-endK01580COG0076unknownunknown100.0100.0100.0
T2D-11A_GL01245464838423Lack both endsK01580COG0076BacteroidetesAlistipes100.0100.0100.0
O2.UC11-1_GL00534374778238Lack 3'-endK01593COG0076unknownunknown100.0100.0100.0
MH0287_GL01181194849715Lack both endsK01580COG0076BacteroidetesBacteroides100.0100.0100.0
158458797-stool1_revised4918668Lack 5'-endK01580COG0076unknownunknown100.0100.0100.0
MH0267_GL00245033862604Lack 3'-endK01580COG0076unknownunknown100.092.0885.07
763982056-stool1_revised4920344Lack both endsK01593COG0076unknownunknown100.0100.0100.0
O2.UC28-0_GL00662433722908Lack 3'-endK01580COG0076BacteroidetesParabacteroides100.084.6890.0
V1.UC36-0_GL00583724993746Lack both endsK13745COG0076unknownunknown100.0100.0100.0
MH0267_GL00245033334414Lack 3'-endK01580COG0076Bacteroidetesunknown100.082.1682.35
V1.CD3-0-PN_GL00402073404230Lack 3'-endK01593COG0076Firmicutesunknown100.081.8984.33
O2.UC32-1_GL00597075156205Lack both endsK13745COG0076unknownunknown100.0100.0100.0
T2D-6A_GL01975785253050Lack 5'-endK01580COG0076BacteroidetesAlistipes100.0100.0100.0
764042746-stool2_revised5285693Lack both endsK01580COG0076BacteroidetesAlistipes100.0100.0100.0
MH0267_GL00245033780465Lack 3'-endK01580COG0076unknownunknown99.5589.880.45
MH0425_GL00874915182140Lack both endsK13745COG0076ProteobacteriaCitrobacter100.0100.0100.0
V1.FI22_GL00626445276414Lack both endsK01580COG0076unknownunknown100.0100.0100.0
MH0267_GL00858173590645Lack 5'-endK01580COG0076BacteroidetesParabacteroides98.2186.2280.82
T2D-25A_GL00392775252490Lack 3'-endK01618COG0076unknownunknown100.0100.0100.0
656390.ERLG_039335406749CompleteK01580COG0076ProteobacteriaEscherichia100.0100.0100.0
159247771-stool1_revised3723452Lack 3'-endK01580COG0076unknownunknown100.089.1180.54
V1.UC30-0_GL01390185308467Lack 5'-endK13745COG0076FirmicutesBlautia100.0100.0100.0
550672.ECCG_039125496417CompleteK01580COG0076ProteobacteriaEscherichia100.0100.0100.0
MH0229_GL01167985383040Lack 3'-endK01580COG0076Bacteroidetesunknown100.0100.0100.0
MH0175_GL00405665381459Lack both endsK01580COG0076BacteroidetesBacteroides100.0100.0100.0
MH0393_GL00082425507944Lack both endsK01593COG0076unknownunknown100.0100.0100.0
MH0297_GL00502465414409Lack both endsK01580COG0076unknownunknown100.0100.0100.0
MH0272_GL00051015503776CompleteK13745COG0076ActinobacteriaBifidobacterium100.0100.0100.0
MH0276_GL00438025503918Lack both endsK01580COG0076unknownunknown100.0100.0100.0
MH0373_GL01280365538419Lack both endsK01580COG0076ProteobacteriaDesulfovibrio100.0100.0100.0
158337416-stool1_revised5524462Lack both endsK04487COG1104unknownunknown100.0100.0100.0
O2.UC47-1_GL01726675608134Lack both endsK01580COG0076unknownunknown100.0100.0100.0
V1.UC42-0_GL00654925518560Lack both endsK01593COG0076unknownunknown100.0100.0100.0
O2.UC6-1_GL00576755608870Lack both endsK01593;K01618COG0076unknownunknown100.0100.0100.0
V1.CD34-0_GL00111885705793Lack both endsunknownCOG0076unknownunknown100.0100.0100.0
O2.UC48-0_GL02624025810388Lack 3'-endK01618COG0076unknownunknown100.0100.0100.0
MH0395_GL00177435634731Lack 3'-endunknownCOG0076unknownunknown100.0100.0100.0
MH0121_GL00539605823369CompleteK01580COG0076ProteobacteriaShigella100.0100.0100.0
MH0266_GL00605515999768Lack 3'-endK01580COG0076BacteroidetesAlistipes100.0100.0100.0
MH0400_GL00674856027888CompleteK01580COG0076FirmicutesLactobacillus100.0100.0100.0
MH0025_GL00605676144724Lack 3'-endK01580COG0076BacteroidetesBacteroides100.0100.0100.0
158337416-stool1_revised6167081CompleteunknownCOG0076unknownunknown100.0100.0100.0
V1.CD4-0-PN_GL00058276291969Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
V1.UC26-0_GL01214426400765Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
MH0186_GL00754206651079Lack 3'-endK01580COG0076Bacteroidetesunknown100.0100.0100.0
MH0435_GL01236666658683Lack 3'-endK01580COG0076unknownunknown100.0100.0100.0
DOM012_GL00750106916866Lack 3'-endK01580COG0076unknownunknown100.0100.0100.0
V1.CD9-0_GL00566757374916Lack 3'-endK01580COG0076unknownunknown100.0100.0100.0
O2.UC48-1_GL01567917581895Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
HT14A_GL00109698501655Lack 5'-endK01580COG0076unknownunknown100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyBacteroidaceae0.4742.08e-1054.91e-103
genusBacteroides0.4742.08e-1054.91e-103
phylumFirmicutes-0.472.43e-1033.82e-101
classClostridia-0.4271.22e-831.15e-81
orderClostridiales-0.4271.22e-831.15e-81
genusCoprococcus-0.3861.83e-671.44e-65
familyRuminococcaceae-0.3773.58e-642.41e-62
phylumProteobacteria0.3618.96e-595.29e-57
genusDorea-0.357.28e-553.82e-53
speciesCoprococcus_catus-0.3437.24e-533.42e-51
speciesEscherichia_coli0.3391.28e-515.49e-50
familyLachnospiraceae-0.3376.21e-512.44e-49
speciesDorea_longicatena-0.3377.81e-512.84e-49
genusEscherichia0.3361.09e-503.67e-49
phylumBacteroidetes0.3353.27e-509.44e-49
classBacteroidia0.3353.4e-509.44e-49
orderBacteroidales0.3353.4e-509.44e-49
genusPantoea0.339.68e-492.4e-47
speciesPantoea_unclassified0.339.68e-492.4e-47
speciesCoprococcus_comes-0.3261.13e-472.67e-46
genusParabacteroides0.3137.08e-441.59e-42
speciesDorea_formicigenerans-0.3113.21e-436.89e-42
speciesRuminococcus_obeum-0.3082.03e-424.17e-41
orderEnterobacteriales0.2995.07e-409.57e-39
familyEnterobacteriaceae0.2995.07e-409.57e-39
familyPorphyromonadaceae0.2923.87e-387.03e-37
speciesBacteroides_vulgatus0.291.75e-373.06e-36
genusFaecalibacterium-0.2893.34e-375.44e-36
speciesFaecalibacterium_prausnitzii-0.2893.34e-375.44e-36
classGammaproteobacteria0.2757.99e-341.26e-32
familyPrevotellaceae-0.2691.93e-322.94e-31
speciesEubacterium_hallii-0.2692.28e-323.36e-31
speciesEubacterium_biforme-0.2611.45e-302.07e-29
orderCoriobacteriales-0.263.63e-304.9e-29
familyCoriobacteriaceae-0.263.63e-304.9e-29
speciesBacteroides_ovatus0.2562.23e-292.92e-28
speciesCollinsella_aerofaciens-0.2562.62e-293.34e-28
genusEubacterium-0.2496.97e-288.51e-27
familyEubacteriaceae-0.2497.03e-288.51e-27
phylumActinobacteria-0.2497.73e-288.9e-27
classActinobacteria-0.2497.73e-288.9e-27
speciesPrevotella_copri-0.2481.44e-271.62e-26
speciesEubacterium_ramulus-0.2398.81e-269.67e-25
speciesAnaerostipes_hadrus-0.2381.68e-251.8e-24
genusFlavonifractor0.2365.09e-255.22e-24
speciesFlavonifractor_plautii0.2365.09e-255.22e-24
speciesBacteroides_thetaiotaomicron0.2349.91e-259.95e-24
speciesRuminococcus_gnavus0.2331.44e-241.42e-23
genusCollinsella-0.2322.31e-242.23e-23
speciesBacteroides_fragilis0.2322.96e-242.79e-23
speciesOlsenella_unclassified-0.2313.64e-243.37e-23
speciesBacteroides_uniformis0.2314.37e-243.97e-23
genusRuminococcus-0.2264.82e-234.29e-22
speciesClostridium_bolteae0.2255.56e-234.86e-22
speciesSubdoligranulum_unclassified-0.2231.5e-221.29e-21
genusOlsenella-0.2222.55e-222.15e-21
classErysipelotrichia-0.2214.41e-223.53e-21
orderErysipelotrichales-0.2214.41e-223.53e-21
familyErysipelotrichaceae-0.2214.41e-223.53e-21
genusPrevotella-0.2181.65e-211.3e-20
genusSubdoligranulum-0.2172.73e-212.11e-20
speciesClostridium_symbiosum0.2163.24e-212.47e-20
speciesBifidobacterium_adolescentis-0.2131.04e-207.79e-20
speciesLachnospiraceae_bacterium_5_1_63FAA-0.2121.97e-201.45e-19
genusBifidobacterium-0.2122.18e-201.58e-19
orderBifidobacteriales-0.2112.9e-202.04e-19
familyBifidobacteriaceae-0.2112.9e-202.04e-19
speciesCoprococcus_sp_ART55_1-0.2071.72e-191.19e-18
speciesClostridiales_bacterium_1_7_47FAA0.2061.97e-191.35e-18
speciesParaprevotella_unclassified-0.2053.27e-192.2e-18
genusParaprevotella-0.2054.07e-192.71e-18
genusButyrivibrio-0.2021.05e-186.88e-18
speciesClostridium_sp_L2_50-0.2011.4e-189.05e-18
genusErysipelotrichaceae_noname-0.22.55e-181.63e-17
speciesEubacterium_ventriosum-0.1976.79e-184.27e-17
speciesRoseburia_hominis-0.1952.01e-171.25e-16
speciesParaprevotella_clara-0.199.85e-176.04e-16
genusCatenibacterium-0.191.19e-167.11e-16
speciesCatenibacterium_mitsuokai-0.191.19e-167.11e-16
speciesMethanobrevibacter_smithii-0.1891.54e-169.09e-16
genusAnaerostipes-0.1891.61e-169.38e-16
speciesCoprococcus_eutactus-0.1882.92e-161.68e-15
speciesParaprevotella_xylaniphila-0.1872.99e-161.7e-15
speciesRuminococcus_sp_5_1_39BFAA-0.1873.89e-162.19e-15
genusPhascolarctobacterium-0.1841.12e-156.15e-15
speciesPhascolarctobacterium_succinatutens-0.1841.12e-156.15e-15
speciesEscherichia_unclassified0.1841.22e-156.62e-15
speciesClostridium_hathewayi0.1831.44e-157.72e-15
classMethanobacteria-0.1831.78e-159.23e-15
orderMethanobacteriales-0.1831.78e-159.23e-15
familyMethanobacteriaceae-0.1831.78e-159.23e-15
speciesEubacterium_rectale-0.1822.07e-151.06e-14
genusMethanobrevibacter-0.1812.61e-151.32e-14
genusRoseburia-0.1788.31e-154.17e-14
speciesEubacterium_siraeum-0.1734.68e-142.33e-13
phylumEuryarchaeota-0.1734.93e-142.42e-13
speciesButyrivibrio_crossotus-0.171.23e-135.99e-13
phylumFusobacteria0.171.27e-135.99e-13
classFusobacteriia0.171.27e-135.99e-13
orderFusobacteriales0.171.27e-135.99e-13
familyFusobacteriaceae0.1682.29e-131.07e-12
speciesFusobacterium_ulcerans0.1682.98e-131.38e-12
genusAdlercreutzia-0.1674.15e-131.88e-12
speciesAdlercreutzia_equolifaciens-0.1674.15e-131.88e-12
speciesBacteroides_xylanisolvens0.1655.99e-132.69e-12
speciesClostridium_nexile0.1656.31e-132.81e-12
speciesRuminococcus_bromii-0.1657.4e-133.26e-12
genusFusobacterium0.1631.25e-125.46e-12
speciesEubacterium_eligens-0.1631.31e-125.67e-12
familyRikenellaceae0.1621.58e-126.72e-12
genusAlistipes0.1621.58e-126.72e-12
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1612.16e-129.1e-12
speciesRuminococcus_callidus-0.1612.46e-121.03e-11
genusMitsuokella-0.162.93e-121.21e-11
speciesStreptococcus_salivarius-0.163.12e-121.28e-11
speciesMitsuokella_multacida-0.163.17e-121.29e-11
speciesMitsuokella_unclassified-0.163.64e-121.47e-11
speciesClostridium_clostridioforme0.1586.82e-122.73e-11
familyOscillospiraceae0.1579.68e-123.81e-11
genusOscillibacter0.1579.68e-123.81e-11
genusCoprobacillus0.1551.42e-115.54e-11
familyClostridiales_noname0.1551.76e-116.81e-11
classBacilli-0.1542.33e-118.94e-11
orderLactobacillales-0.1532.64e-111e-10
speciesRoseburia_inulinivorans-0.1523.4e-111.28e-10
genusStreptococcus-0.1523.54e-111.33e-10
familyStreptococcaceae-0.1524.51e-111.68e-10
speciesBifidobacterium_longum-0.1491.02e-103.76e-10
speciesCoprobacillus_unclassified0.1471.58e-105.78e-10
speciesPeptostreptococcaceae_noname_unclassified-0.1452.93e-101.06e-09
genusPeptostreptococcaceae_noname-0.1443.75e-101.35e-09
speciesAnaerotruncus_colihominis0.1443.99e-101.43e-09
speciesOscillibacter_unclassified0.1444.28e-101.52e-09
familyPeptostreptococcaceae-0.1434.86e-101.71e-09
speciesLactobacillus_ruminis-0.1426.46e-102.26e-09
speciesAnaerotruncus_unclassified-0.1382.28e-097.91e-09
speciesClostridium_citroniae0.1354.25e-091.46e-08
speciesBacteroides_stercoris0.1354.48e-091.53e-08
classNegativicutes-0.1338.46e-092.85e-08
orderSelenomonadales-0.1338.46e-092.85e-08
speciesClostridium_ramosum0.1311.46e-084.89e-08
speciesClostridium_bartlettii-0.1282.56e-088.51e-08
speciesRoseburia_intestinalis-0.1282.83e-089.34e-08
genusClostridiales_noname0.1283.02e-089.9e-08
speciesEggerthella_unclassified0.1273.19e-081.04e-07
speciesLachnospiraceae_bacterium_6_1_63FAA0.1274.01e-081.3e-07
speciesEubacterium_sp_3_1_310.1255.63e-081.81e-07
speciesRuminococcus_lactaris-0.1247.75e-082.47e-07
speciesStreptococcus_parasanguinis-0.1238.76e-082.77e-07
speciesStreptococcus_sanguinis-0.1231.07e-073.37e-07
speciesRuminococcus_champanellensis-0.1221.35e-074.22e-07
speciesStreptococcus_australis-0.121.93e-075.99e-07
speciesBacteroides_pectinophilus-0.1192.35e-077.25e-07
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1192.57e-077.88e-07
speciesAnaerostipes_unclassified0.1192.66e-078.1e-07
speciesAlistipes_senegalensis-0.1173.49e-071.06e-06
speciesCollinsella_unclassified0.1173.55e-071.07e-06
speciesEubacterium_dolichum0.1164.57e-071.37e-06
speciesDialister_succinatiphilus-0.1155.79e-071.72e-06
genusLachnospiraceae_noname-0.1147.29e-072.15e-06
genusMethanosphaera-0.1147.71e-072.25e-06
speciesMethanosphaera_stadtmanae-0.1147.71e-072.25e-06
familyAcidaminococcaceae-0.1147.91e-072.29e-06
speciesMethanobrevibacter_unclassified-0.1148.29e-072.39e-06
genusEggerthella0.1131.06e-063.03e-06
speciesParabacteroides_distasonis0.1121.19e-063.38e-06
speciesOscillibacter_sp_KLE_17280.1111.61e-064.55e-06
genusMorganella0.1111.64e-064.58e-06
speciesMorganella_morganii0.1111.64e-064.58e-06
speciesLachnospiraceae_bacterium_5_1_57FAA0.1092.18e-066.05e-06
speciesMegasphaera_micronuciformis0.1092.55e-067.04e-06
speciesLachnospiraceae_bacterium_1_4_56FAA0.1082.86e-067.85e-06
speciesKlebsiella_pneumoniae0.1073.74e-061.02e-05
speciesDesulfovibrio_piger-0.1064.79e-061.3e-05
speciesBacteroides_caccae0.1055.63e-061.52e-05
genusKlebsiella0.1046.62e-061.78e-05
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1047.01e-061.87e-05
genusClostridiaceae_noname0.1038.67e-062.29e-05
speciesClostridiaceae_bacterium_JC1180.1038.67e-062.29e-05
familyOxalobacteraceae-0.1011.18e-053.09e-05
genusOxalobacter-0.1011.2e-053.11e-05
speciesOxalobacter_formigenes-0.1011.2e-053.11e-05
speciesBilophila_unclassified0.1011.23e-053.17e-05
genusBilophila0.11.38e-053.54e-05
speciesBacteroides_nordii0.0991.66e-054.24e-05
speciesSutterella_wadsworthensis-0.0991.72e-054.36e-05
speciesBacteroides_plebeius-0.0982.36e-055.92e-05
genusCoprobacter-0.0982.37e-055.92e-05
speciesCoprobacter_fastidiosus-0.0982.37e-055.92e-05
speciesParabacteroides_merdae0.0972.47e-056.14e-05
speciesAlistipes_onderdonkii0.0963.46e-058.55e-05
speciesClostridium_asparagiforme0.0953.63e-058.92e-05
speciesDorea_unclassified0.0953.73e-059.12e-05
genusPseudoflavonifractor-0.0926.65e-050.000161
speciesPseudoflavonifractor_capillosus-0.0926.65e-050.000161
speciesBifidobacterium_animalis-0.0926.91e-050.000166
genusSutterella-0.0927.11e-050.00017
speciesCollinsella_intestinalis0.0917.66e-050.000183
speciesLachnospiraceae_bacterium_2_1_58FAA0.0917.78e-050.000184
speciesClostridium_sp_ATCC_BAA_4420.0917.81e-050.000184
speciesRothia_mucilaginosa-0.0918.83e-050.000207
speciesButyrivibrio_unclassified-0.0918.85e-050.000207
speciesBacteroides_cellulosilyticus0.0880.0001350.000314
familyBurkholderiales_noname0.0880.0001460.000338
genusBurkholderiales_noname0.0870.0001550.000355
speciesBurkholderiales_bacterium_1_1_470.0870.0001550.000355
genusTuricibacter-0.0870.0001710.00039
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speciesOscillibacter_sp_KLE_17450.0840.0002940.000658
speciesSubdoligranulum_sp_4_3_54A2FAA0.0840.0002980.000663
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phylumVerrucomicrobia-0.0820.0004140.00088
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speciesFusobacterium_mortiferum0.080.0005160.00107
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speciesCitrobacter_freundii0.0750.001180.00226
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genusRothia-0.0740.001320.00251
speciesEubacterium_cylindroides-0.0730.001480.00281
genusActinomyces-0.0730.00160.00302
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speciesKlebsiella_sp_MS_92_30.0720.001930.00361
speciesRuminococcus_torques-0.0710.002050.00382
genusProteus0.0710.002150.004
familyActinomycetaceae-0.0710.00220.00407
genusParasutterella0.070.00230.00422
speciesParasutterella_excrementihominis0.070.00230.00422
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genusDesulfovibrio-0.070.002380.00434
speciesBacteroides_coprophilus-0.070.00260.00472
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genusGemella-0.0690.00280.00504
speciesPropionibacterium_freudenreichii-0.0680.003040.00546
speciesBlautia_producta0.0680.003260.00583
genusEnterococcus0.0680.003420.00609
speciesBacteroides_oleiciplenus0.0670.003890.0069
speciesEnterococcus_faecium0.0660.004480.00792
speciesDialister_invisus0.0650.004830.00851
familyEnterococcaceae0.0650.004910.00862
genusSutterellaceae_unclassified-0.0640.005360.00937
speciesBacteroides_faecis-0.0640.005460.00951
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orderDesulfovibrionales0.0640.005680.00978
familyDesulfovibrionaceae0.0640.005680.00978
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speciesMegamonas_funiformis-0.0630.006360.0109
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speciesBacteroides_sp_2_1_220.0620.007570.0129
speciesStreptococcus_infantarius0.0610.00790.0134
speciesEnterobacteria_phage_HK5440.0610.008050.0136
genusAnaerotruncus-0.060.008880.0149
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speciesLactobacillus_salivarius0.060.009680.0161
speciesAcidaminococcus_fermentans-0.0590.01110.0184
genusBarnesiella-0.0580.01280.0211
speciesBarnesiella_intestinihominis-0.0580.01280.0211
speciesAlistipes_sp_AP110.0570.01330.0219
speciesParabacteroides_unclassified0.0570.01370.0225
speciesClostridium_perfringens0.0570.01390.0227
speciesErysipelotrichaceae_bacterium_6_1_450.0570.01440.0234
speciesStreptococcus_vestibularis-0.0560.01520.0247
genusSuccinatimonas-0.0560.01540.0248
speciesSuccinatimonas_hippei-0.0560.01540.0248
speciesPrevotella_bivia0.0550.01650.0265
genusBlautia-0.0550.01660.0266
speciesBacteroides_barnesiae-0.0550.01670.0266
speciesBacteroides_coprocola-0.0550.01760.028
speciesLactococcus_phage_P680-0.0540.01890.0299
speciesCoprobacillus_sp_D60.0540.0190.03
speciesBifidobacterium_angulatum-0.0540.02020.0318
speciesBacteroides_salanitronis-0.0540.02040.032
familySuccinivibrionaceae-0.0530.0210.0328
genusAcidaminococcaceae_unclassified0.0530.02160.0336
speciesBifidobacterium_catenulatum-0.0520.02430.0377
speciesHoldemania_filiformis-0.0520.02470.0382
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0520.02530.039
speciesLactococcus_phage_jm2-0.0510.02660.0409
speciesKlebsiella_unclassified0.0510.02740.042
speciesStreptococcus_gordonii-0.0490.03320.0507
speciesLactobacillus_delbrueckii-0.0490.03480.053
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0480.03660.0555
genusLactococcus-0.0480.03740.0566
genusGordonibacter-0.0480.03810.0573
speciesGordonibacter_pamelaeae-0.0480.03810.0573
genusActinobacillus-0.0480.03890.0581
speciesActinobacillus_unclassified-0.0480.03890.0581
speciesAlistipes_sp_HGB50.0480.03990.0594
speciesErysipelotrichaceae_bacterium_21_3-0.0470.04040.06
speciesAlistipes_unclassified-0.0470.04080.0604
speciesAlistipes_finegoldii0.0470.04250.0627
familyMyoviridae0.0450.04960.0729
speciesLactobacillus_amylovorus0.0450.05030.0737
speciesLactobacillus_casei_paracasei-0.0450.05260.0769
speciesLactococcus_phage_936_sensu_lato-0.0440.05490.08
speciesLactococcus_lactis-0.0440.05560.0807
phylumSynergistetes0.0440.0580.0832
classSynergistia0.0440.0580.0832
orderSynergistales0.0440.0580.0832
familySynergistaceae0.0440.0580.0832
speciesClostridium_sp_KLE_17550.0440.05960.0852
speciesEggerthella_sp_1_3_56FAA-0.0430.06540.0933
speciesStreptococcus_anginosus-0.0420.06810.0968
speciesBacteroides_clarus0.0410.07310.104
speciesOdoribacter_unclassified-0.0410.07430.105
speciesLactobacillus_acidophilus-0.0410.0750.106
speciesProteus_mirabilis0.0410.07790.109
speciesLactococcus_phage_phi7-0.040.08130.114
speciesMegamonas_hypermegale-0.040.08130.114
speciesLactobacillus_fermentum0.040.08440.118
speciesBacteroides_sp_1_1_60.040.08640.12
genusPyramidobacter0.040.08730.12
speciesPyramidobacter_piscolens0.040.08730.12
speciesHaemophilus_sputorum-0.040.08740.12
speciesCoprobacillus_sp_29_10.0390.08870.121
speciesBacteroides_intestinalis0.0390.08870.121
speciesLactobacillus_vaginalis0.0390.09520.13
speciesParabacteroides_sp_D13-0.0380.0970.132
speciesBacteroides_eggerthii-0.0370.1120.152
genusButyricicoccus0.0370.1130.152
genusCampylobacter0.0370.1130.152
speciesButyricicoccus_pullicaecorum0.0370.1130.152
genusPeptoniphilus0.0370.1140.153
genusLeuconostoc-0.0360.1210.162
speciesParabacteroides_goldsteinii0.0360.1240.165
speciesStreptococcus_pasteurianus0.0360.1250.166
genusLambdalikevirus0.0350.1260.167
speciesAlistipes_shahii0.0350.1320.175
genusMyoviridae_noname0.0340.1440.19
speciesHoldemania_sp_AP20.0340.1450.191
speciesAcidaminococcus_unclassified0.0330.1480.194
genusPeptostreptococcus-0.0330.1510.197
genusSiphoviridae_noname-0.0330.1520.198
speciesVeillonella_unclassified-0.0330.1570.204
familyCampylobacteraceae0.0330.1580.204
speciesVeillonella_dispar0.0330.1580.204
genusC2likevirus0.0320.1670.215
speciesKlebsiella_phage_KP36-0.0320.1710.22
familyPodoviridae0.030.190.244
speciesPorphyromonas_uenonis0.0290.2040.261
speciesMegasphaera_unclassified-0.0290.2160.274
classEpsilonproteobacteria0.0290.2170.274
orderCampylobacterales0.0290.2170.274
genusHoldemania-0.0290.2170.274
speciesEnterobacter_aerogenes0.0290.2170.274
speciesStreptococcus_mutans-0.0280.220.277
speciesC2likevirus_unclassified0.0280.2340.294
genusPorphyromonas0.0270.240.3
speciesKlebsiella_oxytoca0.0270.2420.302
speciesLactobacillus_rhamnosus-0.0270.2490.309
speciesParabacteroides_johnsonii0.0270.2490.309
speciesErysipelotrichaceae_bacterium_2_2_44A0.0260.2550.316
genusButyricimonas0.0260.2590.318
speciesButyricimonas_synergistica0.0260.2590.318
speciesLeuconostoc_lactis-0.0260.2590.318
speciesBlautia_hydrogenotrophica0.0260.260.319
speciesPorphyromonas_asaccharolytica0.0260.2630.322
speciesEubacterium_limosum0.0260.2690.328
genusWeissella0.0240.2930.356
speciesBifidobacterium_bifidum-0.0240.2950.358
speciesLactobacillus_reuteri0.0240.3020.365
speciesLactobacillus_sanfranciscensis-0.0240.3020.365
genusPropionibacterium-0.0240.3060.368
speciesSlackia_piriformis-0.0240.3060.368
orderCaudovirales0.0230.320.383
speciesLactococcus_garvieae0.0230.3210.384
speciesSutterella_parvirubra0.0230.3240.386
genusTunalikevirus-0.0220.3360.399
familyPropionibacteriaceae0.0220.3390.401
genusMegamonas-0.0220.340.401
speciesCoriobacteriaceae_bacterium_phI0.0220.340.401
speciesMegamonas_unclassified-0.0220.3410.401
speciesBacteroides_sp_4_3_47FAA0.0210.3580.42
classBetaproteobacteria0.020.3790.444
speciesWeissella_confusa0.020.3820.446
speciesParabacteroides_sp_20_3-0.020.3850.449
speciesErysipelotrichaceae_bacterium_3_1_530.020.3870.45
speciesMegamonas_rupellensis-0.020.3930.456
genusCoriobacteriaceae_noname0.020.3990.462
genusMegasphaera0.0190.40.462
orderBurkholderiales0.0190.4040.464
speciesDesulfovibrio_desulfuricans-0.0190.4040.464
speciesBacteroides_massiliensis0.0190.4110.471
speciesLactobacillus_crispatus0.0190.4120.471
speciesHoldemania_unclassified-0.0180.4290.489
speciesPeptostreptococcus_stomatis-0.0180.4330.491
familyViruses_noname-0.0180.4340.491
genusViruses_noname-0.0180.4340.491
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0170.4510.509
genusAggregatibacter-0.0170.4570.515
genusVeillonella-0.0170.4740.533
speciesBacteroides_sp_3_1_190.0170.4750.533
speciesLactobacillus_oris0.0160.4830.54
speciesCollinsella_tanakaei0.0160.5030.561
speciesLachnospiraceae_bacterium_7_1_58FAA0.0150.5130.571
speciesBacteroides_salyersiae0.0140.5420.602
speciesBacteroides_dorei0.0140.5440.603
speciesLactobacillus_plantarum-0.0140.5460.604
genusSlackia-0.0140.5530.61
speciesRoseburia_unclassified-0.0140.5570.613
speciesVeillonella_atypica-0.0130.5780.634
phylumViruses_noname0.0130.5860.64
classViruses_noname0.0130.5860.64
speciesOdoribacter_laneus0.0120.6080.663
speciesParvimonas_unclassified-0.0120.6140.667
familyBacteroidales_noname-0.0120.6180.667
genusBacteroidales_noname-0.0120.6180.667
speciesBacteroidales_bacterium_ph8-0.0120.6180.667
genusParvimonas-0.0110.6210.669
orderAeromonadales-0.0110.640.688
speciesStreptococcus_phage_Sfi210.0110.6470.694
orderViruses_noname-0.010.6740.721
speciesEnterobacter_cloacae0.0090.6950.742
familySiphoviridae0.0090.6980.743
genusStaphylococcus-0.0090.6990.743
speciesGemella_morbillorum-0.0080.7150.758
speciesBifidobacterium_pseudocatenulatum-0.0080.7280.77
familyClostridiales_Family_XI_Incertae_Sedis0.0080.7320.772
speciesBacteroides_finegoldii-0.0080.7330.772
speciesHaemophilus_paraphrohaemolyticus-0.0080.7370.775
familySutterellaceae-0.0080.740.776
speciesLactococcus_phage_bIL670.0080.7440.778
speciesAggregatibacter_segnis-0.0080.7450.778
genusAcidaminococcus-0.0070.7510.782
genusEnterobacter0.0070.7520.782
speciesBifidobacterium_dentium-0.0070.7750.804
familyLeuconostocaceae-0.0060.7850.813
speciesEggerthella_lenta0.0060.7890.815
speciesAcidaminococcus_intestini0.0060.8090.834
genusDialister0.0050.8150.838
speciesBacteroides_fluxus0.0050.8280.849
speciesCampylobacter_concisus-0.0050.8290.849
speciesStreptococcus_mitis_oralis_pneumoniae-0.0050.8350.853
speciesWeissella_cibaria0.0050.840.856
speciesLactobacillus_gasseri0.0050.8430.858
familyStaphylococcaceae-0.0040.8520.865
speciesLactobacillus_mucosae0.0040.860.871
speciesPeptostreptococcus_anaerobius-0.0030.8860.895
speciesAlistipes_indistinctus-0.0030.9020.91
speciesBifidobacterium_breve-0.0010.9530.959
speciesClostridium_spiroforme-0.0010.9740.978
speciesVeillonella_parvula0.00.990.992
orderPseudomonadales0.00.9960.996
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.04371013331390.016313246441.5768004892e-063051.01413
Liver cirrhosisChina1201140.03629944058920.02082886449440.09918842955831666855.9911
Type II diabetesChina1831850.02801008227640.02304401063890.1330181432021086535.9067
Rheumatoid arthritisChina127980.01698439299370.01400168044820.202155175278901230.053
Ulcerative colitisSpain78660.01343031976730.016313246440.2300226545041169238.5696
Type II diabetesDenmark752770.01392162574570.01248316396990.3066702823341590952.1487
Colorectal cancerAustria64350.05021390611360.01875026519830.5314488071371902964.3829
ObesityDenmark1691230.01355560488910.01600431372040.7523377362722512082.6017
Type II diabetesSweden53920.01494986275870.01705997043370.8164981221742470283.6505
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382