MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-23 15:58:01 PST
Job id & description: 1693, dpp4
Query type: dna
Count queries & homologs: 1, 12
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
NC_000002.12:c162074215-161992241331672CompleteK01278COG1506BacteroidetesBacteroides100.0100.099.5
NC_000002.12:c162074215-161992241296321CompleteK01278COG1506BacteroidetesBacteroides100.096.0991.27
NC_000002.12:c162074215-161992241331657CompleteK01278COG1506BacteroidetesBacteroides98.7898.7883.99
NC_000002.12:c162074215-161992241328752Lack 5'-endK01278COG1506BacteroidetesBacteroides100.099.5983.68
NC_000002.12:c162074215-161992241331843CompleteK01278COG1506BacteroidetesBacteroides98.7898.7883.84
NC_000002.12:c162074215-161992241331645CompleteK01278COG1506BacteroidetesBacteroides98.7898.7883.58
NC_000002.12:c162074215-161992241332572CompleteK01278COG1506BacteroidetesBacteroides100.0100.083.03
NC_000002.12:c162074215-161992241332650CompleteK01278COG1506BacteroidetesBacteroides98.7898.7882.86
NC_000002.12:c162074215-161992241331936CompleteK01278COG1506BacteroidetesBacteroides98.7898.7882.48
NC_000002.12:c162074215-161992241273428CompleteK01278COG1506BacteroidetesBacteroides98.7892.3982.34
NC_000002.12:c162074215-161992241332095CompleteK01278COG1506unknownunknown95.6195.6176.78
NC_000002.12:c162074215-161992241329635Lack 5'-endK01278COG1506BacteroidetesBacteroides98.2898.0275.75
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyBacteroidaceae0.7750.00.0
genusBacteroides0.7750.00.0
classBacteroidia0.5987.59e-1827.33e-180
orderBacteroidales0.5987.59e-1827.33e-180
phylumBacteroidetes0.5987.76e-1827.33e-180
speciesBacteroides_ovatus0.581.17e-1689.2e-167
phylumFirmicutes-0.5422.17e-1431.46e-141
speciesBacteroides_thetaiotaomicron0.5241.27e-1327.49e-131
genusParabacteroides0.4932.55e-1151.34e-113
orderClostridiales-0.4916.01e-1142.58e-112
classClostridia-0.4916.02e-1142.58e-112
genusDorea-0.4782.39e-1079.4e-106
speciesDorea_longicatena-0.4735.08e-1051.84e-103
genusCoprococcus-0.4661.88e-1016.34e-100
speciesBacteroides_fragilis0.4487.65e-932.41e-91
speciesCoprococcus_catus-0.4451.64e-914.84e-90
speciesRuminococcus_obeum-0.4442.75e-917.64e-90
familyRuminococcaceae-0.4374.78e-881.25e-86
familyPorphyromonadaceae0.4262.1e-835.22e-82
speciesCoprococcus_comes-0.4093.24e-767.65e-75
speciesCollinsella_aerofaciens-0.4071.59e-753.57e-74
speciesEubacterium_hallii-0.3962.17e-714.66e-70
orderCoriobacteriales-0.3955.39e-711.06e-69
familyCoriobacteriaceae-0.3955.39e-711.06e-69
genusFlavonifractor0.3941.3e-702.36e-69
speciesFlavonifractor_plautii0.3941.3e-702.36e-69
genusCollinsella-0.3854.31e-677.53e-66
speciesBacteroides_xylanisolvens0.3826.99e-661.18e-64
phylumActinobacteria-0.3765.86e-649.22e-63
classActinobacteria-0.3765.86e-649.22e-63
speciesClostridium_bolteae0.3751.75e-632.66e-62
speciesDorea_formicigenerans-0.3712.96e-624.37e-61
familyLachnospiraceae-0.3713.25e-624.65e-61
speciesBifidobacterium_adolescentis-0.3716.25e-628.68e-61
speciesClostridium_symbiosum0.3662.69e-603.63e-59
speciesClostridiales_bacterium_1_7_47FAA0.3632.4e-593.15e-58
speciesMethanobrevibacter_smithii-0.3444.5e-535.74e-52
classMethanobacteria-0.3415.49e-526.48e-51
orderMethanobacteriales-0.3415.49e-526.48e-51
familyMethanobacteriaceae-0.3415.49e-526.48e-51
speciesClostridium_citroniae0.341.13e-511.3e-50
genusMethanobrevibacter-0.3383.03e-513.41e-50
speciesClostridium_hathewayi0.3361.17e-501.28e-49
phylumEuryarchaeota-0.3291.59e-481.71e-47
speciesEubacterium_ramulus-0.3284.44e-484.66e-47
genusRuminococcus-0.3261.76e-471.81e-46
speciesBacteroides_uniformis0.3221.88e-461.89e-45
speciesEubacterium_biforme-0.3215.8e-465.7e-45
speciesSubdoligranulum_unclassified-0.3145.78e-445.57e-43
orderBifidobacteriales-0.3082.28e-422.11e-41
familyBifidobacteriaceae-0.3082.28e-422.11e-41
genusBifidobacterium-0.3074.39e-423.98e-41
genusSubdoligranulum-0.3075.26e-424.68e-41
familyClostridiales_noname0.3051.16e-411.01e-40
genusOlsenella-0.3051.63e-411.4e-40
speciesOlsenella_unclassified-0.3021.09e-409.19e-40
speciesAnaerostipes_hadrus-0.3021.26e-401.04e-39
speciesRuminococcus_sp_5_1_39BFAA-0.2972.53e-392.06e-38
speciesBacteroides_vulgatus0.2932.44e-381.95e-37
speciesEubacterium_siraeum-0.2932.6e-382.05e-37
speciesRuminococcus_gnavus0.2883.77e-372.92e-36
familyEubacteriaceae-0.2876.61e-375.03e-36
genusEubacterium-0.2878.58e-376.43e-36
classErysipelotrichia-0.2772.85e-342.04e-33
orderErysipelotrichales-0.2772.85e-342.04e-33
familyErysipelotrichaceae-0.2772.85e-342.04e-33
genusErysipelotrichaceae_noname-0.2716.86e-334.83e-32
genusClostridiales_noname0.2651.84e-311.28e-30
speciesBacteroides_caccae0.262.55e-301.74e-29
genusButyrivibrio-0.2531.33e-288.97e-28
speciesClostridium_asparagiforme0.253.85e-282.56e-27
genusCatenibacterium-0.2499.05e-285.85e-27
speciesCatenibacterium_mitsuokai-0.2499.05e-285.85e-27
genusActinomyces-0.2481.17e-277.46e-27
familyActinomycetaceae-0.2463.11e-271.96e-26
orderLactobacillales-0.2454.97e-273.09e-26
genusAdlercreutzia-0.2449.36e-275.66e-26
speciesAdlercreutzia_equolifaciens-0.2449.36e-275.66e-26
classBacilli-0.2441.04e-266.21e-26
speciesFusobacterium_ulcerans0.247.25e-264.28e-25
orderActinomycetales-0.2357.71e-254.49e-24
phylumFusobacteria0.237.23e-244.06e-23
classFusobacteriia0.237.23e-244.06e-23
orderFusobacteriales0.237.23e-244.06e-23
speciesBifidobacterium_longum-0.237.78e-244.32e-23
speciesEubacterium_rectale-0.238.65e-244.75e-23
speciesClostridium_clostridioforme0.2291.06e-235.75e-23
familyFusobacteriaceae0.2282.12e-231.14e-22
speciesStreptococcus_thermophilus-0.2264.53e-232.4e-22
speciesCoprococcus_sp_ART55_1-0.2255.7e-232.99e-22
speciesParaprevotella_unclassified-0.2248.65e-234.49e-22
genusParaprevotella-0.2222.21e-221.13e-21
genusFusobacterium0.2223.14e-221.59e-21
speciesBacteroides_nordii0.225.75e-222.89e-21
speciesButyrivibrio_crossotus-0.226.28e-223.12e-21
speciesClostridium_nexile0.2199.88e-224.86e-21
speciesAnaerostipes_unclassified0.2181.25e-216.08e-21
genusPeptostreptococcaceae_noname-0.2181.39e-216.69e-21
familyRikenellaceae0.2163.2e-211.51e-20
genusAlistipes0.2163.2e-211.51e-20
speciesMethanobrevibacter_unclassified-0.2154.46e-212.08e-20
genusAnaerostipes-0.2155.28e-212.44e-20
familyPeptostreptococcaceae-0.2121.67e-207.65e-20
speciesParabacteroides_distasonis0.2112.59e-201.18e-19
familyStreptococcaceae-0.2112.63e-201.18e-19
speciesBilophila_unclassified0.2113.08e-201.37e-19
genusBilophila0.213.88e-201.71e-19
familyPrevotellaceae-0.2071.44e-196.29e-19
speciesRuminococcus_bromii-0.2071.73e-197.49e-19
genusClostridiaceae_noname0.2062.18e-199.27e-19
speciesClostridiaceae_bacterium_JC1180.2062.18e-199.27e-19
genusPhascolarctobacterium-0.2053.54e-191.48e-18
speciesPhascolarctobacterium_succinatutens-0.2053.54e-191.48e-18
speciesLachnospiraceae_bacterium_5_1_63FAA-0.2054.08e-191.69e-18
familyOscillospiraceae0.2044.82e-191.96e-18
genusOscillibacter0.2044.82e-191.96e-18
speciesCoprobacillus_unclassified0.2045.3e-192.13e-18
speciesParabacteroides_unclassified0.2045.32e-192.13e-18
genusStreptococcus-0.2045.54e-192.2e-18
speciesFusobacterium_varium0.2039.08e-193.57e-18
speciesBacteroides_stercoris0.1993.62e-181.41e-17
speciesParaprevotella_clara-0.1994.02e-181.56e-17
phylumVerrucomicrobia-0.1961.01e-173.72e-17
classVerrucomicrobiae-0.1961.01e-173.72e-17
orderVerrucomicrobiales-0.1961.01e-173.72e-17
familyVerrucomicrobiaceae-0.1961.01e-173.72e-17
genusAkkermansia-0.1961.01e-173.72e-17
speciesAkkermansia_muciniphila-0.1961.01e-173.72e-17
speciesPeptostreptococcaceae_noname_unclassified-0.1961.09e-173.99e-17
genusMethanosphaera-0.1961.24e-174.47e-17
speciesMethanosphaera_stadtmanae-0.1961.24e-174.47e-17
genusMitsuokella-0.1951.79e-176.4e-17
genusCoprobacillus0.1951.81e-176.42e-17
speciesMitsuokella_unclassified-0.1942.16e-177.61e-17
speciesAnaerotruncus_colihominis0.1934.13e-171.44e-16
speciesEggerthella_unclassified0.1882.14e-167.43e-16
speciesPropionibacterium_freudenreichii-0.1865.94e-162.05e-15
familyLactobacillaceae-0.1848.94e-163.06e-15
speciesStreptococcus_parasanguinis-0.1831.34e-154.55e-15
speciesStreptococcus_salivarius-0.1831.63e-155.5e-15
speciesAlistipes_senegalensis-0.1822.05e-156.86e-15
genusLactobacillus-0.1822.29e-157.61e-15
speciesBacteroides_dorei0.1822.35e-157.76e-15
speciesBilophila_wadsworthia0.1813.61e-151.18e-14
speciesOscillibacter_unclassified0.184.03e-151.31e-14
speciesAnaerotruncus_unclassified-0.184.4e-151.42e-14
phylumProteobacteria0.1795.98e-151.92e-14
classBetaproteobacteria0.1787.47e-152.38e-14
speciesClostridium_sp_L2_50-0.1761.71e-145.42e-14
orderBurkholderiales0.1752.22e-146.99e-14
genusTuricibacter-0.1752.38e-147.44e-14
speciesMitsuokella_multacida-0.1743.42e-141.06e-13
genusEggerthella0.1743.62e-141.12e-13
familyClostridiaceae0.1743.78e-141.16e-13
speciesOdoribacter_splanchnicus0.1734.62e-141.41e-13
speciesRuminococcus_torques-0.1735.32e-141.61e-13
speciesTuricibacter_sanguinis-0.1735.5e-141.65e-13
speciesParaprevotella_xylaniphila-0.1726.02e-141.8e-13
speciesRuminococcus_callidus-0.1727.77e-142.31e-13
genusFaecalibacterium-0.1728.03e-142.35e-13
speciesFaecalibacterium_prausnitzii-0.1728.03e-142.35e-13
speciesLactobacillus_rhamnosus-0.1691.76e-135.13e-13
genusClostridium0.1682.37e-136.86e-13
speciesPrevotella_copri-0.1682.5e-137.2e-13
speciesBifidobacterium_catenulatum-0.1673.18e-139.1e-13
speciesCoprococcus_eutactus-0.1673.52e-131e-12
speciesStreptococcus_sanguinis-0.1664.77e-131.35e-12
speciesClostridium_ramosum0.1648.37e-132.35e-12
speciesBifidobacterium_animalis-0.1612.14e-125.98e-12
genusOdoribacter0.1612.17e-126.02e-12
familyBurkholderiales_noname0.1612.65e-127.31e-12
speciesEubacterium_cylindroides-0.1612.74e-127.52e-12
speciesDesulfovibrio_piger-0.162.93e-127.99e-12
genusBlautia-0.163.01e-128.17e-12
classDeltaproteobacteria0.163.27e-128.72e-12
orderDesulfovibrionales0.163.27e-128.72e-12
familyDesulfovibrionaceae0.163.27e-128.72e-12
familyMicrococcaceae-0.1594.65e-121.23e-11
genusRothia-0.1595.26e-121.39e-11
genusBurkholderiales_noname0.1595.44e-121.42e-11
speciesBurkholderiales_bacterium_1_1_470.1595.44e-121.42e-11
speciesBacteroides_oleiciplenus0.1585.97e-121.55e-11
speciesTuricibacter_unclassified-0.1578.34e-122.15e-11
genusPropionibacterium-0.1578.81e-122.26e-11
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1561.29e-113.29e-11
speciesClostridium_sp_ATCC_BAA_4420.1532.79e-117.08e-11
familyAcidaminococcaceae-0.1533.23e-118.15e-11
familyBacillales_noname-0.1524.23e-111.06e-10
genusGemella-0.1524.23e-111.06e-10
speciesRoseburia_hominis-0.156.16e-111.53e-10
speciesRothia_mucilaginosa-0.1491.01e-102.5e-10
speciesDialister_succinatiphilus-0.1471.61e-103.96e-10
speciesRuminococcus_lactaris-0.1471.68e-104.11e-10
speciesPrevotella_buccae0.1443.72e-109.01e-10
genusSolobacterium-0.1443.74e-109.01e-10
speciesSolobacterium_moorei-0.1443.74e-109.01e-10
orderBacillales-0.1444.45e-101.07e-09
familySutterellaceae0.1435.35e-101.28e-09
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1426.17e-101.46e-09
genusParasutterella0.1427.77e-101.82e-09
speciesParasutterella_excrementihominis0.1427.77e-101.82e-09
speciesFusobacterium_mortiferum0.1418.89e-102.08e-09
speciesLactobacillus_ruminis-0.1411.01e-092.35e-09
speciesBacteroides_pectinophilus-0.141.34e-093.1e-09
speciesClostridium_bartlettii-0.1372.94e-096.77e-09
speciesLachnospiraceae_bacterium_6_1_63FAA0.1373.05e-096.99e-09
speciesRuminococcus_champanellensis-0.1363.48e-097.94e-09
genusBarnesiella-0.1354.12e-099.3e-09
speciesBarnesiella_intestinihominis-0.1354.12e-099.3e-09
genusLactococcus-0.1354.34e-099.75e-09
speciesLachnospiraceae_bacterium_2_1_58FAA0.1329.31e-092.08e-08
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1321.1e-082.45e-08
genusPrevotella-0.1311.19e-082.64e-08
genusLeuconostoc-0.1311.26e-082.78e-08
speciesBacteroides_sp_2_1_220.1311.39e-083.05e-08
speciesMegasphaera_micronuciformis0.1291.94e-084.24e-08
speciesLactobacillus_casei_paracasei-0.1292.18e-084.74e-08
speciesLactococcus_phage_P680-0.1282.5e-085.41e-08
speciesClostridium_leptum-0.1282.95e-086.36e-08
speciesBacteroides_cellulosilyticus0.1273.49e-087.49e-08
speciesBacteroides_intestinalis0.1264.47e-089.55e-08
speciesEubacterium_ventriosum-0.1264.71e-081e-07
speciesStreptococcus_gordonii-0.1238.71e-081.84e-07
speciesLachnospiraceae_bacterium_5_1_57FAA0.1239.48e-082e-07
genusPseudoflavonifractor-0.1221.18e-072.46e-07
speciesPseudoflavonifractor_capillosus-0.1221.18e-072.46e-07
speciesEubacterium_sp_3_1_310.1221.2e-072.5e-07
speciesBacteroides_salyersiae0.1221.21e-072.5e-07
speciesStreptococcus_mutans-0.1211.45e-072.99e-07
speciesOscillibacter_sp_KLE_17280.1192.44e-075.01e-07
speciesVeillonella_dispar0.1192.55e-075.21e-07
speciesLachnospiraceae_bacterium_1_4_56FAA0.1192.62e-075.33e-07
speciesBifidobacterium_bifidum-0.1173.86e-077.82e-07
speciesKlebsiella_pneumoniae0.1164.5e-079.08e-07
genusDesulfovibrio-0.1148.44e-071.7e-06
speciesErysipelotrichaceae_bacterium_21_3-0.1139.24e-071.85e-06
speciesDorea_unclassified0.1139.55e-071.9e-06
speciesRuminococcus_sp_JC304-0.1131.02e-062.02e-06
speciesLachnospiraceae_bacterium_2_1_46FAA0.1121.11e-062.19e-06
speciesLactococcus_lactis-0.1121.12e-062.2e-06
genusGordonibacter-0.1111.45e-062.83e-06
speciesGordonibacter_pamelaeae-0.1111.45e-062.83e-06
phylumViruses_noname-0.1111.52e-062.94e-06
classViruses_noname-0.1111.52e-062.94e-06
speciesLactobacillus_delbrueckii-0.1111.6e-063.08e-06
speciesOscillibacter_sp_KLE_17450.111.87e-063.59e-06
speciesAlistipes_onderdonkii0.111.9e-063.63e-06
genusOxalobacter-0.112e-063.79e-06
speciesOxalobacter_formigenes-0.112e-063.79e-06
speciesStreptococcus_vestibularis-0.1092.27e-064.29e-06
genusSiphoviridae_noname-0.1092.38e-064.48e-06
familyPropionibacteriaceae-0.1092.52e-064.72e-06
familyOxalobacteraceae-0.1083.04e-065.67e-06
speciesPrevotella_bivia0.1064.5e-068.36e-06
speciesBlautia_producta0.1064.58e-068.48e-06
speciesEscherichia_coli0.1046.58e-061.21e-05
speciesParabacteroides_merdae0.1037.32e-061.34e-05
speciesHoldemania_sp_AP20.1037.46e-061.36e-05
familyLeuconostocaceae-0.1029.58e-061.75e-05
familyBacteroidales_noname-0.1021.01e-051.82e-05
genusBacteroidales_noname-0.1021.01e-051.82e-05
speciesBacteroidales_bacterium_ph8-0.1021.01e-051.82e-05
genusKlebsiella0.1021.09e-051.96e-05
speciesButyrivibrio_unclassified-0.1011.19e-052.13e-05
genusLachnospiraceae_noname-0.11.56e-052.78e-05
speciesVeillonella_parvula0.0991.66e-052.95e-05
speciesBifidobacterium_dentium-0.0982.08e-053.68e-05
speciesEubacterium_dolichum0.0982.13e-053.75e-05
familyEnterococcaceae-0.0972.52e-054.42e-05
genusEnterococcus-0.0963.06e-055.35e-05
speciesAlistipes_putredinis0.0963.12e-055.43e-05
speciesErysipelotrichaceae_bacterium_3_1_530.0953.98e-056.91e-05
speciesEnterococcus_faecium-0.0944.33e-057.49e-05
genusEscherichia0.0935.19e-058.94e-05
familySiphoviridae-0.0935.57e-059.56e-05
orderPseudomonadales-0.099.35e-050.00016
speciesStreptococcus_australis-0.099.8e-050.000167
speciesFusobacterium_nucleatum0.0880.0001360.000231
speciesVeillonella_atypica0.0870.0001710.000289
genusMorganella0.0870.0001770.000297
speciesMorganella_morganii0.0870.0001770.000297
classGammaproteobacteria0.0860.0002040.000341
genusVeillonella0.0840.000270.00045
speciesEnterococcus_faecalis-0.0840.0002940.000489
orderPasteurellales0.0830.0003030.0005
familyPasteurellaceae0.0830.0003030.0005
speciesHaemophilus_parainfluenzae0.0830.0003080.000507
genusCoprobacter-0.0830.0003270.000534
speciesCoprobacter_fastidiosus-0.0830.0003270.000534
genusRuminococcaceae_noname-0.0830.000340.000551
speciesRuminococcaceae_bacterium_D16-0.0830.000340.000551
genusHaemophilus0.0820.0003560.000575
speciesBacteroides_finegoldii0.0820.000370.000596
speciesEggerthella_sp_1_3_56FAA-0.0820.0004060.000652
speciesStreptococcus_mitis_oralis_pneumoniae-0.0820.0004160.000666
orderCaudovirales-0.0810.0004230.000675
orderEnterobacteriales0.0810.000450.000713
familyEnterobacteriaceae0.0810.000450.000713
genusCampylobacter0.0810.0004690.00074
speciesVeillonella_unclassified0.080.0005440.000856
speciesCollinsella_unclassified0.080.0005540.000869
speciesEubacterium_eligens-0.0790.00060.000938
speciesMegasphaera_elsdenii-0.0790.0006140.000956
speciesAlistipes_finegoldii0.0770.0008430.00131
familyCampylobacteraceae0.0770.0008730.00135
speciesLactobacillus_gasseri-0.0760.001010.00156
speciesSutterella_wadsworthensis-0.0760.001070.00165
speciesBacteroides_coprophilus-0.0750.001130.00173
speciesCampylobacter_concisus0.0750.001250.00191
speciesStreptococcus_pasteurianus0.0740.001290.00196
genusHoldemania0.0740.001310.00199
genusButyricimonas0.0740.001340.00201
speciesButyricimonas_synergistica0.0740.001340.00201
speciesParabacteroides_goldsteinii0.0740.001340.00201
genusPeptoniphilus0.0740.001380.00207
speciesRoseburia_intestinalis-0.0730.001540.0023
speciesGemella_morbillorum-0.0720.001770.00263
speciesKlebsiella_unclassified0.0720.001770.00263
classNegativicutes-0.0720.001840.00271
orderSelenomonadales-0.0720.001840.00271
speciesLactococcus_phage_jm2-0.0710.002150.00316
orderViruses_noname-0.070.002490.00365
classEpsilonproteobacteria0.0690.002660.00388
orderCampylobacterales0.0690.002660.00388
speciesCollinsella_intestinalis0.0680.003250.00472
speciesBacteroides_plebeius-0.0660.004150.00601
genusAnaerotruncus-0.0660.004230.00611
speciesBacteroides_salanitronis-0.0660.004250.00612
speciesLactobacillus_plantarum-0.0650.004910.00704
speciesSutterella_parvirubra0.0640.005490.00785
speciesStreptococcus_anginosus-0.0640.005550.00791
speciesBacteroides_coprocola-0.0640.005960.00847
speciesBacteroides_barnesiae-0.0620.006990.00991
speciesBacteroides_eggerthii-0.0610.008010.0113
speciesRoseburia_unclassified-0.0610.008320.0117
speciesParvimonas_unclassified-0.060.009170.0129
genusParvimonas-0.060.009180.0129
speciesLactobacillus_salivarius0.060.009370.0131
genusSutterella-0.0590.01070.0149
speciesBacteroides_faecis0.0590.01070.0149
speciesBifidobacterium_angulatum-0.0590.01110.0153
phylumSynergistetes0.0590.01120.0153
classSynergistia0.0590.01120.0153
orderSynergistales0.0590.01120.0153
familySynergistaceae0.0590.01120.0153
speciesErysipelotrichaceae_bacterium_6_1_450.0580.01220.0166
speciesStreptococcus_infantarius0.0570.01340.0182
genusPeptostreptococcus-0.0570.01450.0197
genusPyramidobacter0.0560.01530.0206
speciesPyramidobacter_piscolens0.0560.01530.0206
speciesLactococcus_phage_phi7-0.0560.01570.0211
familySuccinivibrionaceae-0.0560.01630.0219
genusSuccinatimonas-0.0540.01880.0251
speciesSuccinatimonas_hippei-0.0540.01880.0251
speciesSlackia_piriformis-0.0540.01960.0261
speciesOdoribacter_unclassified-0.0540.02050.0272
speciesBacteroides_massiliensis0.0530.02170.0287
speciesBifidobacterium_pseudocatenulatum0.0520.02510.0331
genusAggregatibacter0.0510.0260.0342
speciesErysipelotrichaceae_bacterium_2_2_44A0.0510.02840.0372
speciesPeptostreptococcus_stomatis-0.050.03220.0421
genusMegasphaera0.0490.03390.0442
speciesSubdoligranulum_sp_4_3_54A2FAA0.0490.0340.0442
speciesPrevotella_stercorea-0.0480.03620.0469
speciesClostridium_spiroforme-0.0480.03710.048
speciesAcidaminococcus_fermentans-0.0480.03890.0502
speciesMegamonas_rupellensis0.0470.04020.0517
genusSlackia-0.0470.04030.0517
speciesLactococcus_garvieae-0.0470.04170.0533
genusPantoea0.0470.04260.0542
speciesPantoea_unclassified0.0470.04260.0542
speciesAlistipes_sp_AP110.0460.04460.0566
familyPodoviridae0.0460.04470.0566
speciesAggregatibacter_segnis0.0460.04750.0599
speciesBacteroides_sp_1_1_60.0450.04990.0628
speciesOdoribacter_laneus-0.0450.05180.065
genusMegamonas0.0440.05570.0696
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0440.05570.0696
speciesMegamonas_unclassified0.0440.05620.07
speciesAlistipes_shahii0.0440.05660.0703
speciesClostridium_sp_KLE_17550.0440.05880.0728
speciesC2likevirus_unclassified-0.0440.05890.0728
speciesWeissella_cibaria-0.0440.05950.0733
genusC2likevirus-0.0420.06730.0827
speciesLactobacillus_acidophilus-0.0420.07240.0888
speciesBlautia_hydrogenotrophica-0.0410.07610.0931
genusButyricicoccus0.0410.07840.0952
speciesButyricicoccus_pullicaecorum0.0410.07840.0952
speciesLactobacillus_sanfranciscensis-0.0410.07850.0952
speciesProteus_mirabilis0.040.08180.099
speciesParabacteroides_johnsonii0.040.08520.103
speciesCollinsella_tanakaei0.0390.09220.111
genusDialister-0.0380.09920.119
genusCitrobacter0.0380.09990.12
speciesEnterobacteria_phage_HK5440.0380.1010.121
speciesLactobacillus_fermentum-0.0370.1090.13
speciesLactobacillus_reuteri-0.0360.1240.147
speciesParabacteroides_sp_D13-0.0350.130.154
speciesAlistipes_sp_HGB50.0340.1380.163
genusRoseburia-0.0330.1490.176
speciesHaemophilus_sputorum0.0330.1550.182
speciesKlebsiella_sp_MS_92_30.0330.1590.187
familyClostridiales_Family_XI_Incertae_Sedis-0.0320.1630.191
speciesBacteroides_sp_3_1_190.0310.180.21
speciesLachnospiraceae_bacterium_7_1_58FAA0.0310.1840.214
speciesDialister_invisus0.0310.1870.217
speciesCitrobacter_freundii0.030.1950.226
speciesMegamonas_funiformis-0.030.2010.233
speciesEubacterium_limosum0.0290.2090.241
familyMyoviridae-0.0290.2160.249
genusStaphylococcus-0.0270.2350.27
speciesKlebsiella_oxytoca-0.0270.2430.278
speciesRoseburia_inulinivorans-0.0270.2480.283
orderAeromonadales-0.0270.2510.286
speciesCitrobacter_unclassified0.0270.2520.287
genusAcidaminococcus-0.0250.2760.313
speciesDesulfovibrio_desulfuricans-0.0250.2770.314
speciesPorphyromonas_uenonis0.0250.2830.32
genusActinobacillus0.0240.290.326
speciesActinobacillus_unclassified0.0240.290.326
genusProteus0.0230.3280.368
speciesLeuconostoc_lactis-0.0220.3330.372
speciesEggerthella_lenta0.0220.3370.376
speciesAlistipes_unclassified-0.0220.3460.385
speciesHoldemania_unclassified0.0210.3630.403
speciesLactobacillus_mucosae0.0210.3730.413
speciesBacteroides_fluxus-0.020.380.42
speciesCoprobacillus_sp_D60.020.3910.431
speciesLactobacillus_amylovorus-0.0170.4650.512
speciesLactobacillus_crispatus-0.0170.4680.514
speciesAcidaminococcus_unclassified-0.0160.4810.527
speciesKlebsiella_phage_KP360.0160.4820.527
speciesBacteroides_sp_4_3_47FAA0.0160.4910.535
genusWeissella-0.0150.5080.552
familyStaphylococcaceae-0.0140.5310.576
speciesPorphyromonas_asaccharolytica0.0140.5370.58
speciesCoprobacillus_sp_29_10.0140.5370.58
genusAcidaminococcaceae_unclassified0.0130.5750.619
speciesAlistipes_indistinctus-0.0130.5760.619
genusLambdalikevirus-0.0130.5890.632
speciesEscherichia_unclassified-0.0120.5970.639
speciesMegasphaera_unclassified-0.0120.6040.645
speciesLactococcus_phage_bIL670.0120.6060.646
speciesBacteroides_clarus0.0120.6090.647
genusTunalikevirus0.0110.6250.663
speciesParabacteroides_sp_20_3-0.0110.6340.671
speciesStreptococcus_lutetiensis0.010.6660.703
speciesLactobacillus_vaginalis-0.010.6790.715
familyViruses_noname-0.0070.7480.785
genusViruses_noname-0.0070.7480.785
familyVeillonellaceae-0.0070.7530.788
speciesHaemophilus_paraphrohaemolyticus-0.0070.760.794
genusPorphyromonas0.0070.7740.806
speciesStreptococcus_phage_Sfi210.0070.7790.809
speciesLactococcus_phage_936_sensu_lato-0.0060.780.809
speciesAcidaminococcus_intestini0.0060.8030.831
genusSutterellaceae_unclassified0.0050.8150.842
speciesMegamonas_hypermegale0.0050.8180.843
genusCoriobacteriaceae_noname-0.0040.8640.888
speciesLachnospiraceae_bacterium_1_1_57FAA0.0040.8680.891
speciesWeissella_confusa0.0030.9060.928
speciesEnterobacter_aerogenes-0.0020.9210.941
speciesClostridium_perfringens0.0020.9240.942
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0020.9290.945
speciesCoriobacteriaceae_bacterium_phI-0.0010.9530.967
genusEnterobacter0.0010.9610.973
speciesPeptostreptococcus_anaerobius-0.0010.9670.977
genusMyoviridae_noname-0.0010.9730.981
speciesBifidobacterium_breve-0.0010.9760.981
speciesLactobacillus_oris0.0010.9770.981
speciesHoldemania_filiformis0.0010.9790.981
speciesEnterobacter_cloacae-0.0010.9820.982
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.07894202754460.05198112157170.000713389860683704223.6555
Type II diabetesChina1831850.06234178155060.05287040074340.00674743082778321910.6382
Crohns diseaseSpain17660.04527467252390.02415022275740.00992752912289807426.8462
ObesityDenmark1691230.02629436704930.02099790688150.0338043137399405613.3373
Rheumatoid arthritisChina127980.03369372956760.02762782436890.0847719336273475315.8502
Type II diabetesSweden53920.01230351392890.008823794295060.227946534853796026.9556
Colorectal cancerAustria64350.007695831446180.005792277788560.4487235520611622454.8924
Ulcerative colitisSpain78660.02263074368760.02415022275740.9785738045242986098.5023
Type II diabetesDenmark752770.02900088125670.02419498911680.9887392848683030999.351
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382