MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-24 12:57:44 PST
Job id & description: 1697, codb1
Query type: dna
Count queries & homologs: 1, 1
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
codb11087665CompleteK03457COG1457ActinobacteriaEggerthella100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEggerthella_unclassified0.711.41e-2866.66e-284
genusEggerthella0.7081.39e-2843.28e-282
speciesEggerthella_lenta0.5281.76e-1342.77e-132
genusCoprobacillus0.3451.79e-532.11e-51
speciesCoprobacillus_unclassified0.3347.17e-506.77e-48
speciesClostridium_ramosum0.3244.39e-473.45e-45
speciesLachnospiraceae_bacterium_5_1_57FAA0.3191.79e-451.21e-43
speciesRuminococcus_gnavus0.3152.06e-441.22e-42
speciesClostridium_bolteae0.3144.56e-442.39e-42
genusGordonibacter0.317.53e-433.23e-41
speciesGordonibacter_pamelaeae0.317.53e-433.23e-41
speciesClostridium_symbiosum0.3082.9e-421.14e-40
speciesClostridium_hathewayi0.2964.81e-391.75e-37
speciesClostridium_clostridioforme0.2821.65e-355.56e-34
speciesLachnospiraceae_bacterium_1_4_56FAA0.2766.06e-341.91e-32
genusBlautia0.2741.69e-334.99e-32
speciesBlautia_producta0.2684.51e-321.25e-30
speciesClostridiales_bacterium_1_7_47FAA0.2611.65e-304.33e-29
speciesClostridium_citroniae0.2596.04e-301.5e-28
genusFlavonifractor0.2472.03e-274.56e-26
speciesFlavonifractor_plautii0.2472.03e-274.56e-26
speciesErysipelotrichaceae_bacterium_2_2_44A0.2455.65e-271.21e-25
familySutterellaceae-0.2414.45e-269.13e-25
genusActinomyces0.2331.71e-243.36e-23
familyActinomycetaceae0.2323.01e-245.68e-23
speciesAlistipes_senegalensis-0.2299.53e-241.73e-22
speciesClostridium_asparagiforme0.2273.5e-236.12e-22
familyPrevotellaceae-0.2256.14e-231.04e-21
genusClostridium0.2231.59e-222.59e-21
familyClostridiaceae0.2232.04e-223.21e-21
speciesAnaerotruncus_colihominis0.2223.13e-224.77e-21
orderBacillales0.2181.61e-212.37e-20
familyBacillales_noname0.2172.7e-213.64e-20
genusGemella0.2172.7e-213.64e-20
speciesErysipelotrichaceae_bacterium_6_1_450.2172.7e-213.64e-20
orderCoriobacteriales0.2147.73e-219.86e-20
familyCoriobacteriaceae0.2147.73e-219.86e-20
classBetaproteobacteria-0.2131.19e-201.48e-19
orderBurkholderiales-0.214.26e-205.16e-19
genusLachnospiraceae_noname0.214.7e-205.55e-19
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2096.2e-207.14e-19
genusSolobacterium0.2071.65e-191.81e-18
speciesSolobacterium_moorei0.2071.65e-191.81e-18
genusOdoribacter-0.2071.81e-191.94e-18
speciesEubacterium_siraeum-0.2011.94e-182.03e-17
speciesParaprevotella_xylaniphila-0.1984.85e-184.98e-17
genusButyrivibrio-0.1985.16e-185.18e-17
speciesEubacterium_biforme-0.1961.03e-179.92e-17
speciesOdoribacter_splanchnicus-0.1961.03e-179.92e-17
speciesRuminococcus_torques0.1951.51e-171.43e-16
speciesAlistipes_shahii-0.1942.2e-172.04e-16
speciesEubacterium_sp_3_1_310.1942.59e-172.35e-16
genusSutterella-0.1933.59e-173.15e-16
speciesEggerthella_sp_1_3_56FAA0.1933.6e-173.15e-16
speciesLachnospiraceae_bacterium_6_1_63FAA0.1891.74e-161.49e-15
orderActinomycetales0.1891.84e-161.53e-15
speciesSutterella_wadsworthensis-0.1891.85e-161.53e-15
phylumActinobacteria0.1882.04e-161.63e-15
classActinobacteria0.1882.04e-161.63e-15
genusAnaerostipes0.1873.33e-162.62e-15
speciesClostridium_nexile0.1865.67e-164.39e-15
speciesParaprevotella_unclassified-0.1858.64e-166.58e-15
genusParaprevotella-0.1849.56e-167.16e-15
speciesAnaerostipes_unclassified0.183.73e-152.75e-14
speciesLachnospiraceae_bacterium_5_1_63FAA0.185.04e-153.66e-14
phylumEuryarchaeota-0.1795.64e-154.03e-14
genusOxalobacter-0.1787.99e-155.55e-14
speciesOxalobacter_formigenes-0.1787.99e-155.55e-14
genusBarnesiella-0.1771.37e-149.24e-14
speciesBarnesiella_intestinihominis-0.1771.37e-149.24e-14
speciesRuminococcus_sp_5_1_39BFAA0.1761.77e-141.18e-13
genusClostridiales_noname0.1752.44e-141.6e-13
familyOxalobacteraceae-0.1752.87e-141.86e-13
speciesStreptococcus_sanguinis0.1743.04e-141.94e-13
classMethanobacteria-0.1734.23e-142.59e-13
orderMethanobacteriales-0.1734.23e-142.59e-13
familyMethanobacteriaceae-0.1734.23e-142.59e-13
familyClostridiales_noname0.1727.99e-144.83e-13
speciesMitsuokella_unclassified-0.171.15e-136.87e-13
speciesEubacterium_eligens-0.171.22e-137.2e-13
familyClostridiales_Family_XI_Incertae_Sedis0.171.32e-137.69e-13
genusMitsuokella-0.171.56e-138.88e-13
genusMethanobrevibacter-0.171.57e-138.88e-13
speciesMethanobrevibacter_smithii-0.171.58e-138.88e-13
speciesParaprevotella_clara-0.1692.01e-131.12e-12
speciesButyrivibrio_crossotus-0.1682.26e-131.24e-12
speciesParabacteroides_merdae-0.1664.82e-132.61e-12
speciesDialister_invisus0.1665.81e-133.12e-12
genusPhascolarctobacterium-0.1656.77e-133.55e-12
speciesPhascolarctobacterium_succinatutens-0.1656.77e-133.55e-12
speciesStreptococcus_mitis_oralis_pneumoniae0.1648.49e-134.4e-12
speciesDesulfovibrio_piger-0.1641.09e-125.53e-12
speciesSubdoligranulum_sp_4_3_54A2FAA0.1641.09e-125.53e-12
speciesCoprococcus_sp_ART55_1-0.1621.57e-127.88e-12
familyStreptococcaceae0.163.06e-121.52e-11
genusHoldemania0.163.14e-121.54e-11
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1585.75e-122.8e-11
genusStreptococcus0.1585.83e-122.81e-11
familyBacteroidales_noname-0.1577.54e-123.52e-11
genusBacteroidales_noname-0.1577.54e-123.52e-11
speciesBacteroidales_bacterium_ph8-0.1577.54e-123.52e-11
familyAcidaminococcaceae-0.1578.49e-123.93e-11
classBacilli0.1579.75e-124.47e-11
speciesLachnospiraceae_bacterium_2_1_58FAA0.1541.88e-118.53e-11
speciesErysipelotrichaceae_bacterium_3_1_530.1541.92e-118.63e-11
orderLactobacillales0.1532.68e-111.19e-10
speciesStreptococcus_anginosus0.1532.73e-111.2e-10
speciesPrevotella_copri-0.1533.1e-111.35e-10
speciesCoprococcus_eutactus-0.156.21e-112.69e-10
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1499.4e-114.03e-10
genusRuminococcus0.1481.26e-105.36e-10
genusPropionibacterium0.1481.36e-105.73e-10
genusPrevotella-0.1462.18e-109.11e-10
speciesClostridium_bartlettii0.1443.95e-101.64e-09
genusDesulfovibrio-0.1444.43e-101.82e-09
genusCoprobacter-0.1435.58e-102.25e-09
speciesCoprobacter_fastidiosus-0.1435.58e-102.25e-09
speciesAlistipes_indistinctus-0.1418.53e-103.41e-09
speciesErysipelotrichaceae_bacterium_21_30.1419.52e-103.78e-09
genusParvimonas0.1391.49e-095.86e-09
speciesParvimonas_unclassified0.1391.51e-095.89e-09
speciesLactobacillus_rhamnosus0.1381.9e-097.35e-09
speciesClostridium_sp_KLE_17550.1363.43e-091.32e-08
genusEnterococcus0.1346.72e-092.56e-08
familyEnterococcaceae0.1337.43e-092.81e-08
speciesBifidobacterium_longum0.1337.79e-092.92e-08
genusSutterellaceae_unclassified-0.1338.2e-093.05e-08
speciesHoldemania_sp_AP20.1311.31e-084.83e-08
speciesStreptococcus_vestibularis0.1311.35e-084.94e-08
speciesLactobacillus_gasseri0.131.5e-085.45e-08
speciesEnterococcus_faecium0.131.56e-085.62e-08
familyPorphyromonadaceae-0.131.59e-085.69e-08
speciesAnaerotruncus_unclassified-0.131.66e-085.89e-08
genusCoprococcus-0.1282.5e-088.78e-08
speciesBlautia_hydrogenotrophica0.1282.51e-088.78e-08
speciesCollinsella_aerofaciens-0.1282.73e-089.47e-08
orderBifidobacteriales0.1282.81e-089.61e-08
familyBifidobacteriaceae0.1282.81e-089.61e-08
speciesSubdoligranulum_unclassified-0.1283.01e-081.02e-07
speciesRoseburia_hominis-0.1273.5e-081.18e-07
genusBifidobacterium0.1264.13e-081.38e-07
speciesRuminococcus_champanellensis-0.1255.35e-081.78e-07
genusCatenibacterium-0.1255.92e-081.94e-07
speciesCatenibacterium_mitsuokai-0.1255.92e-081.94e-07
genusPeptostreptococcus0.1246.8e-082.21e-07
speciesBacteroides_faecis-0.1238.69e-082.81e-07
speciesAlistipes_putredinis-0.1221.23e-073.95e-07
speciesBacteroides_fragilis0.1221.26e-074.02e-07
speciesStreptococcus_salivarius0.1221.27e-074.02e-07
speciesMitsuokella_multacida-0.1221.33e-074.19e-07
speciesAlistipes_finegoldii-0.1211.47e-074.59e-07
speciesBacteroides_pectinophilus-0.1211.61e-075e-07
speciesLactobacillus_ruminis-0.1211.64e-075.06e-07
speciesAnaerostipes_hadrus0.121.74e-075.33e-07
familyPropionibacteriaceae0.121.81e-075.5e-07
genusFaecalibacterium-0.121.83e-075.5e-07
speciesFaecalibacterium_prausnitzii-0.121.83e-075.5e-07
speciesGemella_morbillorum0.1192.54e-077.59e-07
familyPeptostreptococcaceae0.1192.65e-077.87e-07
speciesLachnospiraceae_bacterium_1_1_57FAA0.1183.31e-079.76e-07
speciesStreptococcus_gordonii0.1173.78e-071.11e-06
genusSubdoligranulum-0.1156.19e-071.8e-06
speciesEscherichia_coli0.1156.52e-071.89e-06
speciesStreptococcus_thermophilus0.1147.55e-072.17e-06
speciesBacteroides_plebeius-0.1147.72e-072.2e-06
genusEscherichia0.1147.75e-072.2e-06
speciesStreptococcus_mutans0.1139.14e-072.58e-06
orderEnterobacteriales0.1131.01e-062.82e-06
familyEnterobacteriaceae0.1131.01e-062.82e-06
genusRothia0.1121.09e-063.03e-06
familyMicrococcaceae0.1121.17e-063.23e-06
genusDialister0.1121.18e-063.24e-06
genusPeptostreptococcaceae_noname0.1121.34e-063.66e-06
speciesStreptococcus_parasanguinis0.1111.45e-063.93e-06
speciesRothia_mucilaginosa0.1111.55e-064.18e-06
speciesOlsenella_unclassified-0.111.82e-064.88e-06
genusPeptoniphilus0.111.85e-064.93e-06
familyLactobacillaceae0.112e-065.3e-06
phylumBacteroidetes-0.1092.17e-065.68e-06
classBacteroidia-0.1092.18e-065.68e-06
orderBacteroidales-0.1092.18e-065.68e-06
familyLeuconostocaceae0.1092.26e-065.86e-06
speciesPeptostreptococcus_stomatis0.1082.75e-067.09e-06
genusButyricimonas-0.1083.14e-068.01e-06
speciesButyricimonas_synergistica-0.1083.14e-068.01e-06
genusClostridiaceae_noname0.1073.5e-068.83e-06
speciesClostridiaceae_bacterium_JC1180.1073.5e-068.83e-06
speciesMethanobrevibacter_unclassified-0.1064.3e-061.08e-05
speciesClostridium_sp_L2_50-0.1054.99e-061.25e-05
speciesStreptococcus_australis0.1055.09e-061.26e-05
speciesPropionibacterium_freudenreichii0.1046.55e-061.62e-05
speciesLactobacillus_sanfranciscensis0.1047.2e-061.77e-05
genusLactobacillus0.1011.25e-053.06e-05
speciesKlebsiella_oxytoca0.1011.28e-053.11e-05
speciesLactobacillus_fermentum0.0991.95e-054.72e-05
speciesLactobacillus_plantarum0.0982.08e-055.01e-05
speciesFusobacterium_ulcerans0.0982.35e-055.63e-05
speciesBifidobacterium_dentium0.0972.51e-055.98e-05
speciesCoriobacteriaceae_bacterium_phI0.0962.95e-057e-05
speciesClostridium_spiroforme0.0963.29e-057.76e-05
speciesPrevotella_stercorea-0.0963.45e-058.1e-05
speciesEubacterium_hallii0.0953.81e-058.9e-05
speciesClostridium_sp_ATCC_BAA_4420.0954.25e-059.88e-05
familyStaphylococcaceae0.0944.5e-050.000104
genusFusobacterium0.0935.49e-050.000126
genusCoriobacteriaceae_noname0.0935.62e-050.000129
speciesRoseburia_inulinivorans-0.0936.02e-050.000137
genusLactococcus0.0936.05e-050.000137
genusLeuconostoc0.0927.2e-050.000163
speciesDialister_succinatiphilus-0.0918.05e-050.000181
speciesLactobacillus_delbrueckii0.0918.32e-050.000186
speciesLachnospiraceae_bacterium_2_1_46FAA0.098.94e-050.000199
speciesRuminococcus_callidus-0.099.31e-050.000206
familyFusobacteriaceae0.090.00010.000221
speciesCoprococcus_catus-0.0890.0001120.000246
classGammaproteobacteria0.0890.0001210.000264
speciesBacteroides_caccae-0.0890.0001220.000265
speciesLactococcus_lactis0.0870.0001560.000338
genusParabacteroides-0.0870.0001570.000338
speciesCollinsella_unclassified0.0860.0001950.000418
genusCollinsella-0.0860.0002090.000446
speciesEubacterium_cylindroides-0.0850.0002240.000476
speciesBacteroides_eggerthii-0.0850.0002390.000506
speciesButyrivibrio_unclassified-0.0850.0002530.000533
phylumFusobacteria0.0840.0002570.000534
classFusobacteriia0.0840.0002570.000534
orderFusobacteriales0.0840.0002570.000534
genusPseudoflavonifractor-0.0840.0002650.000546
speciesPseudoflavonifractor_capillosus-0.0840.0002650.000546
orderPseudomonadales0.0840.0002670.000548
speciesRuminococcus_obeum0.0830.0003180.00065
genusStaphylococcus0.0820.0003780.000769
speciesEubacterium_dolichum0.0820.000380.00077
familyRikenellaceae-0.0820.0003940.000791
genusAlistipes-0.0820.0003940.000791
speciesBacteroides_intestinalis-0.0810.0004270.000854
speciesFusobacterium_nucleatum0.0810.0004690.000934
genusPyramidobacter0.0810.0004890.000966
speciesPyramidobacter_piscolens0.0810.0004890.000966
speciesBifidobacterium_adolescentis-0.080.000540.00106
speciesLactobacillus_vaginalis0.0790.0006720.00132
speciesDorea_formicigenerans0.0790.0006770.00132
genusOlsenella-0.0780.0006830.00133
speciesPrevotella_bivia0.0780.0007110.00138
speciesCoprobacillus_sp_D60.0780.0007150.00138
speciesEubacterium_rectale-0.0780.0007940.00152
speciesBacteroides_cellulosilyticus-0.0770.0008840.00169
speciesEubacterium_limosum0.0760.001080.00206
speciesBifidobacterium_animalis0.0740.001340.00254
speciesBacteroides_coprophilus-0.0740.001370.00259
speciesSlackia_piriformis-0.0730.001480.00278
speciesDesulfovibrio_desulfuricans-0.0730.001640.00307
genusWeissella0.0720.001710.00319
speciesHoldemania_filiformis0.0720.001720.0032
speciesLactobacillus_oris0.0720.001820.00336
genusButyricicoccus0.0720.001830.00336
speciesButyricicoccus_pullicaecorum0.0720.001830.00336
speciesWeissella_confusa0.0720.001860.0034
speciesBacteroides_coprocola-0.0720.001870.00341
speciesBifidobacterium_pseudocatenulatum0.0710.002210.00401
genusParasutterella-0.0710.002250.00405
speciesParasutterella_excrementihominis-0.0710.002250.00405
phylumSynergistetes0.070.002450.00435
classSynergistia0.070.002450.00435
orderSynergistales0.070.002450.00435
familySynergistaceae0.070.002450.00435
speciesBacteroides_dorei-0.070.002510.00444
genusHaemophilus-0.070.002630.00461
speciesStreptococcus_infantarius0.070.002630.00461
familyLachnospiraceae0.0690.002650.00463
speciesRuminococcus_sp_JC3040.0690.002870.005
genusRoseburia-0.0690.002950.00512
orderPasteurellales-0.0680.003370.00581
familyPasteurellaceae-0.0680.003370.00581
speciesHaemophilus_parainfluenzae-0.0670.003540.00607
genusMethanosphaera-0.0670.003560.00607
speciesMethanosphaera_stadtmanae-0.0670.003560.00607
speciesCoprococcus_comes-0.0670.003650.0062
speciesOscillibacter_sp_KLE_17280.0670.003670.00621
speciesLactobacillus_casei_paracasei0.0660.004140.00698
genusCitrobacter0.0660.004260.00716
speciesLactobacillus_salivarius0.0660.004320.00721
speciesEubacterium_ventriosum-0.0660.004320.00721
speciesPorphyromonas_uenonis0.0660.004550.00754
speciesAcidaminococcus_intestini-0.0660.004550.00754
speciesWeissella_cibaria0.0650.005030.0083
genusMorganella0.0650.005260.00862
speciesMorganella_morganii0.0650.005260.00862
speciesBacteroides_clarus-0.0640.005450.0089
speciesMegasphaera_unclassified-0.0640.00570.00928
speciesParabacteroides_distasonis-0.0640.005810.00942
speciesStreptococcus_phage_Sfi210.0630.006020.00973
speciesPeptostreptococcus_anaerobius0.0630.006270.0101
speciesHoldemania_unclassified0.0630.006330.0102
speciesBacteroides_ovatus0.0630.006570.0105
speciesCoprobacillus_sp_29_10.0630.006750.0108
speciesBacteroides_finegoldii-0.0620.00710.0113
speciesCitrobacter_freundii0.0620.007280.0115
speciesClostridium_leptum0.0620.007420.0117
speciesBifidobacterium_angulatum-0.0620.007590.0119
genusAdlercreutzia0.0620.007760.0121
speciesAdlercreutzia_equolifaciens0.0620.007760.0121
familyOscillospiraceae0.0610.008370.013
genusOscillibacter0.0610.008370.013
speciesBacteroides_salyersiae-0.060.009360.0145
speciesEscherichia_unclassified0.060.009370.0145
classNegativicutes-0.060.009930.0152
orderSelenomonadales-0.060.009930.0152
speciesLactobacillus_reuteri0.0590.01040.0159
genusEubacterium-0.0580.01160.0177
genusKlebsiella0.0580.01180.0179
familyEubacteriaceae-0.0580.01230.0186
speciesRuminococcus_lactaris-0.0570.01330.0201
speciesParabacteroides_sp_D13-0.0570.01340.0201
speciesEubacterium_ramulus-0.0570.01340.0201
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0570.01410.0211
speciesBacteroides_vulgatus-0.0560.0150.0223
genusRuminococcaceae_noname-0.0560.01510.0223
speciesRuminococcaceae_bacterium_D16-0.0560.01510.0223
speciesStreptococcus_lutetiensis0.0560.01570.0232
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0560.01580.0232
speciesFusobacterium_varium0.0560.01610.0236
speciesBifidobacterium_breve0.0550.01670.0243
speciesOscillibacter_unclassified0.0550.01670.0243
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0540.01920.0279
speciesVeillonella_parvula0.0540.01990.0288
speciesCitrobacter_unclassified0.0540.02070.0299
speciesEnterococcus_faecalis0.0530.02110.0304
speciesBacteroides_massiliensis-0.0530.02120.0304
speciesOdoribacter_unclassified-0.0530.0230.0329
speciesMegasphaera_micronuciformis0.0520.02380.0339
speciesBacteroides_uniformis-0.0520.02510.0357
speciesLactobacillus_acidophilus0.050.03080.0437
speciesKlebsiella_unclassified0.0490.03260.0461
speciesLeuconostoc_lactis0.0490.0330.0465
speciesLactococcus_phage_936_sensu_lato-0.0490.03350.0471
speciesParabacteroides_johnsonii-0.0490.03470.0486
genusDorea0.0490.03480.0486
speciesParabacteroides_goldsteinii-0.0480.03650.0508
speciesBacteroides_sp_3_1_190.0470.04180.058
speciesAlistipes_sp_HGB5-0.0470.04290.0594
speciesOscillibacter_sp_KLE_17450.0460.04540.0627
speciesRuminococcus_bromii0.0460.04650.064
familySuccinivibrionaceae-0.0460.04850.0662
familyBacteroidaceae0.0460.04850.0662
genusBacteroides0.0460.04850.0662
speciesDorea_longicatena-0.0460.04880.0664
classErysipelotrichia0.0450.05040.068
orderErysipelotrichales0.0450.05040.068
familyErysipelotrichaceae0.0450.05040.068
speciesAcidaminococcus_fermentans-0.0450.05310.0714
genusPorphyromonas0.0440.05560.0746
speciesRoseburia_unclassified-0.0440.0560.0749
phylumViruses_noname-0.0440.05680.0753
classViruses_noname-0.0440.05680.0753
speciesBacteroides_thetaiotaomicron0.0440.05680.0753
speciesLactobacillus_crispatus0.0440.05810.0768
speciesAlistipes_onderdonkii-0.0440.05890.0776
speciesLactococcus_garvieae0.0440.05910.0776
speciesMegamonas_funiformis-0.0440.05920.0776
genusSuccinatimonas-0.0430.06070.0791
speciesSuccinatimonas_hippei-0.0430.06070.0791
speciesStreptococcus_pasteurianus0.0430.06340.0824
genusTunalikevirus-0.0430.06440.0835
genusAcidaminococcaceae_unclassified-0.0420.06710.0868
genusMegasphaera-0.0420.070.0903
orderAeromonadales-0.0410.07940.102
speciesVeillonella_dispar0.040.0820.105
genusPantoea0.040.08630.11
speciesPantoea_unclassified0.040.08630.11
speciesKlebsiella_phage_KP36-0.040.08650.11
speciesSutterella_parvirubra-0.040.08690.11
genusSlackia-0.0360.1190.151
speciesLactococcus_phage_phi7-0.0360.120.151
speciesLactococcus_phage_P680-0.0340.1380.174
speciesAlistipes_unclassified0.0340.1470.185
speciesMegasphaera_elsdenii-0.0330.1490.187
familySiphoviridae-0.0330.1530.191
speciesBacteroides_salanitronis-0.0330.1560.194
speciesKlebsiella_pneumoniae0.0320.1610.2
speciesMegamonas_rupellensis-0.0320.1640.203
classClostridia0.0320.1660.205
orderClostridiales0.0320.1660.205
genusVeillonella0.0320.1670.205
orderCaudovirales-0.0310.1760.216
speciesEnterobacter_cloacae0.0310.1870.229
speciesPorphyromonas_asaccharolytica0.030.1930.235
speciesHaemophilus_paraphrohaemolyticus-0.030.20.243
phylumFirmicutes0.030.2010.243
speciesEnterobacteria_phage_HK5440.030.2010.243
speciesCollinsella_intestinalis0.0290.2140.258
speciesLactobacillus_amylovorus0.0280.2180.262
speciesBacteroides_oleiciplenus0.0280.2230.268
familyPodoviridae0.0280.2290.274
genusAcidaminococcus-0.0270.2430.29
speciesBifidobacterium_catenulatum-0.0270.2440.291
speciesBilophila_wadsworthia0.0270.250.297
speciesCampylobacter_concisus-0.0260.2680.318
speciesEnterobacter_aerogenes-0.0250.2730.323
genusEnterobacter0.0250.2790.329
speciesVeillonella_atypica0.0230.3180.374
speciesPrevotella_buccae0.0230.3270.384
speciesBacteroides_nordii-0.0220.3340.391
genusSiphoviridae_noname-0.0220.3370.394
familyMyoviridae-0.0210.3580.417
phylumProteobacteria0.020.380.442
genusMyoviridae_noname-0.020.3880.45
speciesBacteroides_xylanisolvens-0.020.390.451
speciesCollinsella_tanakaei-0.020.3920.452
speciesPeptostreptococcaceae_noname_unclassified-0.020.3990.459
speciesMegamonas_hypermegale-0.0190.4090.47
genusBurkholderiales_noname-0.0190.4170.477
speciesBurkholderiales_bacterium_1_1_47-0.0190.4170.477
speciesHaemophilus_sputorum0.0190.420.479
speciesDorea_unclassified0.0180.4250.483
familyBurkholderiales_noname-0.0180.4280.486
genusBilophila0.0180.4290.486
speciesBilophila_unclassified0.0180.4470.505
speciesOdoribacter_laneus-0.0170.4590.517
speciesC2likevirus_unclassified-0.0170.4650.523
speciesBifidobacterium_bifidum0.0170.4690.526
genusAnaerotruncus-0.0160.4890.547
classDeltaproteobacteria-0.0160.50.555
orderDesulfovibrionales-0.0160.50.555
familyDesulfovibrionaceae-0.0160.50.555
speciesTuricibacter_sanguinis0.0150.5130.568
genusC2likevirus-0.0140.5410.597
speciesLactococcus_phage_bIL670.0140.5410.597
speciesVeillonella_unclassified0.0140.5440.599
orderViruses_noname-0.0130.5620.617
phylumVerrucomicrobia-0.0130.5820.63
classVerrucomicrobiae-0.0130.5820.63
orderVerrucomicrobiales-0.0130.5820.63
familyVerrucomicrobiaceae-0.0130.5820.63
genusAkkermansia-0.0130.5820.63
speciesAkkermansia_muciniphila-0.0130.5820.63
speciesProteus_mirabilis0.0130.5840.631
familyViruses_noname-0.0120.6170.663
genusViruses_noname-0.0120.6170.663
speciesClostridium_perfringens0.0110.650.697
speciesFusobacterium_mortiferum0.010.6620.709
speciesRoseburia_intestinalis-0.010.6720.718
speciesParabacteroides_unclassified0.010.6770.721
familyVeillonellaceae0.0090.690.734
genusCampylobacter0.0090.70.742
speciesAcidaminococcus_unclassified0.0090.7050.745
genusTuricibacter-0.0090.7060.745
speciesAggregatibacter_segnis0.0080.7150.753
speciesBacteroides_sp_2_1_22-0.0080.7160.753
genusProteus0.0080.7250.76
speciesMegamonas_unclassified-0.0070.7540.789
genusMegamonas-0.0070.7640.798
speciesTuricibacter_unclassified-0.0070.7680.8
familyRuminococcaceae-0.0070.7760.807
speciesBacteroides_sp_4_3_47FAA-0.0060.7860.815
genusActinobacillus-0.0060.7890.815
speciesActinobacillus_unclassified-0.0060.7890.815
familyCampylobacteraceae0.0060.7930.817
speciesBacteroides_stercoris0.0050.830.854
speciesAlistipes_sp_AP110.0050.8410.863
genusLambdalikevirus-0.0040.8490.869
speciesBacteroides_barnesiae-0.0040.8570.876
speciesBacteroides_fluxus0.0040.8730.89
speciesKlebsiella_sp_MS_92_30.0030.8840.899
classEpsilonproteobacteria-0.0030.8970.909
orderCampylobacterales-0.0030.8970.909
genusAggregatibacter0.0030.9050.914
speciesBacteroides_sp_1_1_60.0030.9060.914
speciesLactococcus_phage_jm20.0030.9130.919
speciesParabacteroides_sp_20_3-0.0020.9270.931
genusErysipelotrichaceae_noname-0.0010.9620.964
speciesLactobacillus_mucosae0.00.9980.998
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Rheumatoid arthritisChina127980.000378999817080.0007490944890620.009031502375999613.20472
Crohns diseaseSpain17660.0002046712777940.0001010249429540.0111494195745828427.5445
Type II diabetesSweden53920.0005237125883480.0002280043172130.136958252463487516.5086
Type II diabetesChina1831850.000164003572420.0001003823225510.1460864539011146137.8763
Liver cirrhosisChina1201140.0001550351163360.0001202358213650.2375762537141997967.1134
Ulcerative colitisSpain78660.0001524865184770.0001010249429540.3538964233871531750.5278
Colorectal cancerAustria64350.0007909846699860.003686422450870.4247253101991559352.7575
Type II diabetesDenmark752771.71315993922e-052.35584826444e-050.4846183965132014266.0242
ObesityDenmark1691231.89478357227e-052.9957480702e-050.6544153158742290675.3214
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382