MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-25 10:55:20 PST
Job id & description: 1698, dec.igc.80
Query type: protein
Count queries & homologs: 28, 28
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
521000.PROVRETT_05813479046CompleteK01580COG0076ProteobacteriaProvidencia100.0100.0100.0
DLM012_GL0046122524085CompleteK01580COG0076FirmicutesEnterococcus100.0100.0100.0
V1.UC38-0_GL0015422546922CompleteK01580COG0076FirmicutesEnterococcus100.0100.0100.0
MH0277_GL0036623525212CompleteK01580COG0076FirmicutesEnterococcus100.0100.0100.0
T2D-31A_GL0082004547268CompleteK01580COG0076FirmicutesLactobacillus100.0100.0100.0
529507.PMI1209559499CompleteK01580COG0076ProteobacteriaProteus100.0100.0100.0
MH0277_GL0049368536501CompleteK01580COG0076FirmicutesEnterococcus100.0100.0100.0
DLM027_GL0005635556459CompleteK01580COG0076unknownunknown100.0100.0100.0
V1.CD3-0-PT_GL0001934678621CompleteK01580COG0076unknownunknown100.0100.0100.0
O2.CD2-0-PT_GL0034442912402CompleteK01593COG0076Firmicutesunknown100.0100.0100.0
V1.CD18-0_GL0073864941342CompleteK01593COG0076unknownunknown100.0100.0100.0
N043A_GL0079676972000Lack 5'-endK01593COG0076FirmicutesBlautia100.0100.0100.0
O2.UC19-1_GL0077654990955CompleteK01593COG0076Firmicutesunknown100.0100.0100.0
V1.CD3-0-PN_GL00658321039752CompleteK01593COG0076unknownunknown100.0100.0100.0
158924089-stool1_revised1047184CompleteK01593COG0076FirmicutesBlautia100.0100.0100.0
V1.FI18_GL01214361051560CompleteK01593COG0076FirmicutesBlautia100.0100.0100.0
742723.HMPREF9477_005791059168CompleteK01593COG0076Firmicutesunknown100.0100.0100.0
V1.UC28-0_GL00240122584654Lack 3'-endunknownunknownunknownunknown100.0100.0100.0
DOF013_GL00393917467772Completeunknownunknownunknownunknown100.0100.0100.0
V1.CD7-0_GL00764487553425Completeunknownunknownunknownunknown100.0100.0100.0
MH0086_GL00178147566390Completeunknownunknownunknownunknown100.0100.0100.0
MH0384_GL00751497545592Completeunknownunknownunknownunknown100.0100.0100.0
ED14A_GL00073347589073Completeunknownunknownunknownunknown100.0100.0100.0
MH0088_GL00443667566451Completeunknownunknownunknownunknown100.0100.0100.0
MH0381_GL01645287545458Completeunknownunknownunknownunknown100.0100.0100.0
MH0150_GL00861487568651Completeunknownunknownunknownunknown100.0100.0100.0
MH0021_GL00022707565148Completeunknownunknownunknownunknown100.0100.0100.0
MH0403_GL00094527990074Lack 5'-endunknownunknownunknownunknown100.0100.0100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesRuminococcus_gnavus0.5471.85e-1468.73e-144
speciesLachnospiraceae_bacterium_9_1_43BFAA0.3962.34e-715.52e-69
speciesCoprobacillus_unclassified0.3884.19e-686.59e-66
speciesClostridium_ramosum0.3841.35e-661.59e-64
genusCoprobacillus0.3662.83e-602.67e-58
speciesClostridium_nexile0.349.95e-527.83e-50
genusBlautia0.317.38e-434.98e-41
speciesLachnospiraceae_bacterium_6_1_63FAA0.3082.59e-421.53e-40
phylumFusobacteria0.2892.03e-378.71e-36
classFusobacteriia0.2892.03e-378.71e-36
orderFusobacteriales0.2892.03e-378.71e-36
familyFusobacteriaceae0.2885.56e-372.19e-35
genusFusobacterium0.2812.15e-357.81e-34
speciesClostridium_bolteae0.2732.57e-338.66e-32
speciesLachnospiraceae_bacterium_2_1_58FAA0.2683.27e-321.03e-30
speciesLachnospiraceae_bacterium_1_4_56FAA0.2644.34e-311.28e-29
speciesAnaerostipes_unclassified0.2611.65e-304.58e-29
familyClostridiaceae0.2611.84e-304.82e-29
genusClostridium0.263.26e-308.1e-29
speciesSubdoligranulum_unclassified-0.2586.61e-301.56e-28
familyRikenellaceae-0.2545.96e-291.28e-27
genusAlistipes-0.2545.96e-291.28e-27
genusSubdoligranulum-0.2513.42e-287.02e-27
speciesFusobacterium_ulcerans0.256.16e-281.21e-26
familyBacteroidales_noname-0.2431.43e-262.5e-25
genusBacteroidales_noname-0.2431.43e-262.5e-25
speciesBacteroidales_bacterium_ph8-0.2431.43e-262.5e-25
speciesBlautia_producta0.245.35e-269.02e-25
speciesClostridium_clostridioforme0.2356.48e-251.05e-23
speciesAlistipes_shahii-0.2349.22e-251.45e-23
speciesAlistipes_senegalensis-0.2272.47e-233.76e-22
familyEnterococcaceae0.2231.99e-222.94e-21
speciesRoseburia_hominis-0.2222.25e-223.22e-21
genusEnterococcus0.2213.93e-225.46e-21
genusEggerthella0.2121.61e-202.17e-19
speciesClostridiales_bacterium_1_7_47FAA0.213.6e-204.72e-19
speciesEubacterium_siraeum-0.2095.63e-207.18e-19
speciesAlistipes_putredinis-0.2081.08e-191.34e-18
speciesEggerthella_unclassified0.2071.41e-191.71e-18
speciesFusobacterium_varium0.2053.74e-194.41e-18
speciesClostridium_symbiosum0.2053.87e-194.46e-18
classGammaproteobacteria0.2045.91e-196.64e-18
familyRuminococcaceae-0.2036.86e-197.53e-18
speciesCoprococcus_catus-0.2011.68e-181.8e-17
speciesAnaerotruncus_unclassified-0.1933.5e-173.67e-16
genusCoprococcus-0.1933.82e-173.92e-16
speciesRuminococcus_callidus-0.1934.26e-174.28e-16
genusOdoribacter-0.1865.09e-165.01e-15
orderEnterobacteriales0.1856.34e-165.98e-15
familyEnterobacteriaceae0.1856.34e-165.98e-15
speciesAlistipes_finegoldii-0.1831.79e-151.66e-14
speciesEubacterium_rectale-0.1821.98e-151.8e-14
speciesEscherichia_coli0.1812.66e-152.37e-14
speciesOdoribacter_splanchnicus-0.184.12e-153.6e-14
genusEscherichia0.1795.61e-154.81e-14
phylumProteobacteria0.1797.11e-155.99e-14
speciesEnterococcus_faecalis0.1789.49e-157.86e-14
speciesEnterococcus_faecium0.1771.07e-148.71e-14
genusFlavonifractor0.1761.76e-141.38e-13
speciesFlavonifractor_plautii0.1761.76e-141.38e-13
speciesMegasphaera_micronuciformis0.1752.66e-142.06e-13
genusFaecalibacterium-0.1752.87e-142.15e-13
speciesFaecalibacterium_prausnitzii-0.1752.87e-142.15e-13
speciesLachnospiraceae_bacterium_5_1_57FAA0.1742.98e-142.2e-13
speciesEubacterium_dolichum0.1743.57e-142.59e-13
speciesStreptococcus_mitis_oralis_pneumoniae0.1743.71e-142.65e-13
genusClostridiales_noname0.1734.49e-143.16e-13
speciesEubacterium_eligens-0.1735.68e-143.94e-13
genusBarnesiella-0.1727.75e-145.23e-13
speciesBarnesiella_intestinihominis-0.1727.75e-145.23e-13
genusEubacterium-0.171.54e-131.02e-12
familyEubacteriaceae-0.1691.61e-131.06e-12
speciesAlistipes_indistinctus-0.1682.8e-131.81e-12
phylumVerrucomicrobia-0.1673.45e-132.06e-12
classVerrucomicrobiae-0.1673.45e-132.06e-12
orderVerrucomicrobiales-0.1673.45e-132.06e-12
familyVerrucomicrobiaceae-0.1673.45e-132.06e-12
genusAkkermansia-0.1673.45e-132.06e-12
speciesAkkermansia_muciniphila-0.1673.45e-132.06e-12
speciesClostridium_hathewayi0.1665.89e-133.48e-12
genusOxalobacter-0.1656.29e-133.62e-12
speciesOxalobacter_formigenes-0.1656.29e-133.62e-12
speciesParabacteroides_merdae-0.1656.84e-133.89e-12
genusPantoea0.1631.17e-126.5e-12
speciesPantoea_unclassified0.1631.17e-126.5e-12
familyBacillales_noname0.1621.57e-128.52e-12
genusGemella0.1621.57e-128.52e-12
familyOxalobacteraceae-0.1621.73e-129.28e-12
genusAnaerotruncus-0.1612.25e-121.19e-11
familyClostridiales_noname0.163.65e-121.91e-11
classMethanobacteria-0.1594.24e-122.15e-11
orderMethanobacteriales-0.1594.24e-122.15e-11
familyMethanobacteriaceae-0.1594.24e-122.15e-11
speciesLachnospiraceae_bacterium_2_1_46FAA0.1587.11e-123.57e-11
genusMethanobrevibacter-0.1579.47e-124.71e-11
genusVeillonella0.1561.37e-116.74e-11
phylumEuryarchaeota-0.1551.48e-117.2e-11
speciesMethanobrevibacter_smithii-0.1551.79e-118.62e-11
genusLachnospiraceae_noname0.1542.46e-111.17e-10
speciesFusobacterium_nucleatum0.1532.7e-111.27e-10
genusDesulfovibrio-0.1532.84e-111.33e-10
familyStreptococcaceae0.1514.89e-112.26e-10
genusSolobacterium0.156.48e-112.94e-10
speciesSolobacterium_moorei0.156.48e-112.94e-10
speciesOscillibacter_unclassified-0.156.57e-112.95e-10
classBacilli0.156.7e-112.98e-10
speciesEubacterium_ventriosum-0.1498.25e-113.64e-10
orderLactobacillales0.1499.11e-113.98e-10
speciesVeillonella_parvula0.1491.06e-104.59e-10
genusStreptococcus0.1481.34e-105.75e-10
speciesFusobacterium_mortiferum0.1471.6e-106.8e-10
speciesBifidobacterium_adolescentis-0.1471.72e-107.25e-10
genusAdlercreutzia-0.1462.09e-108.65e-10
speciesAdlercreutzia_equolifaciens-0.1462.09e-108.65e-10
familyOscillospiraceae-0.1462.3e-109.36e-10
genusOscillibacter-0.1462.3e-109.36e-10
speciesCoprococcus_comes-0.1452.96e-101.19e-09
speciesParabacteroides_unclassified0.1453.14e-101.26e-09
speciesClostridium_sp_L2_50-0.1444.28e-101.7e-09
speciesVeillonella_dispar0.1435.16e-102.03e-09
speciesVeillonella_atypica0.141.24e-094.84e-09
speciesAlistipes_onderdonkii-0.1391.59e-096.15e-09
speciesRuminococcus_lactaris-0.1381.94e-097.44e-09
orderBacillales0.1382.08e-097.92e-09
genusKlebsiella0.1382.14e-098.08e-09
speciesEggerthella_lenta0.1363.46e-091.3e-08
speciesClostridium_citroniae0.1364.02e-091.49e-08
speciesKlebsiella_pneumoniae0.1346.55e-092.42e-08
speciesEubacterium_ramulus-0.1336.97e-092.55e-08
genusButyricicoccus0.1329.31e-093.35e-08
speciesButyricicoccus_pullicaecorum0.1329.31e-093.35e-08
speciesCollinsella_aerofaciens-0.1329.59e-093.43e-08
speciesMethanobrevibacter_unclassified-0.1321.13e-084.01e-08
genusActinomyces0.1311.26e-084.44e-08
genusButyrivibrio-0.131.73e-086.05e-08
speciesCoprococcus_sp_ART55_1-0.131.88e-086.52e-08
speciesStreptococcus_lutetiensis0.1292.08e-087.17e-08
familyActinomycetaceae0.1292.28e-087.8e-08
speciesBacteroides_fragilis0.1273.36e-081.14e-07
speciesErysipelotrichaceae_bacterium_2_2_44A0.1273.48e-081.17e-07
speciesVeillonella_unclassified0.1273.7e-081.24e-07
speciesAlistipes_sp_AP11-0.1264.79e-081.59e-07
genusPseudoflavonifractor-0.1246.68e-082.19e-07
speciesPseudoflavonifractor_capillosus-0.1246.68e-082.19e-07
speciesStreptococcus_parasanguinis0.1247.53e-082.45e-07
speciesRuminococcus_obeum-0.1239.23e-082.98e-07
classErysipelotrichia0.1231.01e-073.2e-07
orderErysipelotrichales0.1231.01e-073.2e-07
familyErysipelotrichaceae0.1231.01e-073.2e-07
speciesStreptococcus_anginosus0.1221.21e-073.81e-07
familyLachnospiraceae0.1211.55e-074.85e-07
speciesClostridium_leptum-0.121.84e-075.71e-07
genusCollinsella-0.122.16e-076.66e-07
genusPeptostreptococcus0.1183.01e-079.23e-07
speciesMitsuokella_unclassified-0.1183.2e-079.74e-07
genusMitsuokella-0.1164.53e-071.37e-06
speciesStreptococcus_sanguinis0.1164.65e-071.39e-06
genusMorganella0.1164.67e-071.39e-06
speciesMorganella_morganii0.1164.67e-071.39e-06
orderActinomycetales0.1147.33e-072.16e-06
speciesRuminococcus_bromii-0.1138.65e-072.54e-06
genusButyricimonas-0.1121.08e-063.13e-06
speciesButyricimonas_synergistica-0.1121.08e-063.13e-06
speciesStreptococcus_vestibularis0.1121.21e-063.48e-06
speciesClostridium_perfringens0.1121.23e-063.52e-06
speciesClostridium_sp_ATCC_BAA_4420.1111.44e-064.09e-06
speciesDorea_longicatena-0.1111.57e-064.44e-06
speciesParaprevotella_xylaniphila-0.1111.65e-064.64e-06
speciesStreptococcus_salivarius0.112.02e-065.64e-06
genusProteus0.112.04e-065.66e-06
genusAnaerostipes0.1092.19e-066.04e-06
speciesDesulfovibrio_piger-0.1092.52e-066.92e-06
classDeltaproteobacteria-0.1082.63e-067.09e-06
orderDesulfovibrionales-0.1082.63e-067.09e-06
familyDesulfovibrionaceae-0.1082.63e-067.09e-06
familyBacteroidaceae0.1082.68e-067.15e-06
genusBacteroides0.1082.68e-067.15e-06
genusCatenibacterium-0.1073.22e-068.49e-06
speciesCatenibacterium_mitsuokai-0.1073.22e-068.49e-06
speciesDesulfovibrio_desulfuricans-0.1064.32e-061.13e-05
speciesProteus_mirabilis0.1064.75e-061.24e-05
speciesEubacterium_biforme-0.1055.44e-061.41e-05
genusParaprevotella-0.1038.8e-062.27e-05
familyPrevotellaceae-0.1038.93e-062.29e-05
speciesCitrobacter_unclassified0.1029.91e-062.53e-05
speciesParaprevotella_unclassified-0.1011.12e-052.84e-05
speciesStreptococcus_australis0.1011.15e-052.9e-05
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1011.17e-052.94e-05
speciesLactobacillus_salivarius0.1011.25e-053.12e-05
speciesButyrivibrio_crossotus-0.11.41e-053.5e-05
speciesLactobacillus_oris0.0991.74e-054.3e-05
speciesStreptococcus_gordonii0.0982.18e-055.36e-05
speciesCitrobacter_freundii0.0982.21e-055.4e-05
genusCitrobacter0.0982.29e-055.57e-05
speciesPrevotella_buccae0.0972.69e-056.51e-05
speciesParaprevotella_clara-0.0972.72e-056.55e-05
speciesStreptococcus_pasteurianus0.0972.84e-056.8e-05
speciesCampylobacter_concisus0.0963.05e-057.27e-05
genusRuminococcus-0.0953.6e-058.54e-05
speciesWeissella_cibaria0.0953.87e-059.13e-05
genusMegasphaera0.0953.89e-059.13e-05
speciesRuminococcus_torques0.0953.95e-059.23e-05
speciesPeptostreptococcus_stomatis0.0954.04e-059.39e-05
speciesLactobacillus_ruminis-0.0944.36e-050.000101
speciesLactobacillus_fermentum0.0926.66e-050.000153
genusCoprobacter-0.0927.37e-050.000168
speciesCoprobacter_fastidiosus-0.0927.37e-050.000168
genusErysipelotrichaceae_noname0.0890.0001160.000263
speciesBacteroides_uniformis-0.0890.0001170.000264
speciesCoprococcus_eutactus-0.0870.0001780.0004
genusActinobacillus0.0860.0001870.000416
speciesActinobacillus_unclassified0.0860.0001870.000416
speciesHoldemania_sp_AP20.0860.0001920.000425
speciesKlebsiella_oxytoca0.0860.0002120.000468
speciesClostridium_asparagiforme0.0860.0002130.000468
speciesRothia_mucilaginosa0.0850.0002330.000509
genusAggregatibacter0.0850.0002350.000511
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0840.0002610.000565
speciesLactobacillus_vaginalis0.0840.0002660.000573
familyPorphyromonadaceae-0.0810.0004280.000918
genusMethanosphaera-0.0810.0004450.000946
speciesMethanosphaera_stadtmanae-0.0810.0004450.000946
genusPorphyromonas-0.0810.0004610.000976
speciesStreptococcus_mutans0.0810.0004660.000982
speciesOlsenella_unclassified-0.080.0005310.00111
classClostridia-0.080.0005560.00116
orderClostridiales-0.080.0005560.00116
speciesEubacterium_sp_3_1_310.080.0005790.0012
speciesBilophila_unclassified-0.0790.0005920.00122
familyViruses_noname0.0790.0006270.00128
genusViruses_noname0.0790.0006270.00128
speciesRoseburia_inulinivorans-0.0790.0006570.00134
speciesStreptococcus_infantarius0.0780.0006940.00141
speciesErysipelotrichaceae_bacterium_3_1_530.0780.00070.00141
genusBilophila-0.0780.0007060.00142
speciesEubacterium_hallii-0.0780.0007680.00154
genusWeissella0.0770.0007960.00159
genusRuminococcaceae_noname-0.0770.0008080.0016
speciesRuminococcaceae_bacterium_D16-0.0770.0008080.0016
speciesLactobacillus_rhamnosus0.0760.001080.00212
speciesHaemophilus_sputorum0.0740.001280.00251
speciesCollinsella_intestinalis0.0740.001440.00281
speciesBacteroides_caccae-0.0730.001480.00287
speciesParabacteroides_goldsteinii-0.0730.001640.00317
speciesRuminococcus_champanellensis-0.0730.001660.0032
genusCampylobacter0.0730.001690.00324
speciesHaemophilus_paraphrohaemolyticus0.0720.001780.0034
familyMicrococcaceae0.0720.00190.00361
genusRothia0.0720.001910.00361
speciesKlebsiella_unclassified0.0720.001910.00361
speciesBacteroides_cellulosilyticus-0.0710.002060.00387
speciesButyrivibrio_unclassified-0.0710.002130.00399
familyCampylobacteraceae0.0710.002150.00401
speciesLactobacillus_crispatus0.0710.002180.00405
speciesDorea_unclassified0.0710.002230.00413
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0710.002260.00417
speciesAggregatibacter_segnis0.070.002320.00426
speciesGemella_morbillorum0.0690.002770.00507
speciesEscherichia_unclassified0.0690.002820.00514
genusLactococcus0.0670.003560.00645
speciesPorphyromonas_asaccharolytica-0.0670.003570.00645
familyLeuconostocaceae0.0670.003580.00645
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0660.004050.00727
speciesClostridium_bartlettii0.0660.004120.00737
classEpsilonproteobacteria0.0650.004850.00861
orderCampylobacterales0.0650.004850.00861
speciesBifidobacterium_dentium0.0650.005150.0091
genusClostridiaceae_noname0.0650.005230.00913
speciesClostridiaceae_bacterium_JC1180.0650.005230.00913
orderPasteurellales0.0650.005240.00913
familyPasteurellaceae0.0650.005240.00913
speciesMitsuokella_multacida-0.0630.006040.0105
speciesLactobacillus_gasseri0.0630.006120.0106
speciesHaemophilus_parainfluenzae0.0630.006170.0106
speciesEnterobacteria_phage_HK5440.0630.006250.0107
genusHaemophilus0.0630.006680.0114
speciesDorea_formicigenerans-0.0620.007180.0122
speciesLactococcus_lactis0.0620.007430.0126
familyPeptostreptococcaceae0.060.009640.0163
genusOlsenella-0.0580.01180.0199
speciesWeissella_confusa0.0580.0120.0202
familyAcidaminococcaceae-0.0580.01220.0203
speciesLactobacillus_mucosae0.0580.01220.0203
genusAcidaminococcaceae_unclassified-0.0580.01290.0214
speciesHoldemania_unclassified-0.0580.01290.0214
speciesAlistipes_sp_HGB5-0.0560.01470.0243
familyLactobacillaceae0.0560.01490.0245
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0550.01660.0272
genusPeptostreptococcaceae_noname0.0550.01760.0287
speciesBilophila_wadsworthia-0.0540.01930.0314
speciesClostridium_sp_KLE_17550.0530.02250.0365
speciesErysipelotrichaceae_bacterium_6_1_450.0530.02290.037
speciesSutterella_wadsworthensis-0.0520.02550.0411
genusLactobacillus0.0510.02840.0456
genusDorea-0.0510.02870.0459
speciesAcidaminococcus_fermentans-0.050.02930.0467
speciesBacteroides_coprophilus-0.050.03220.0512
speciesBacteroides_nordii-0.0490.03430.0543
genusPrevotella-0.0490.03460.0546
genusParasutterella-0.0490.03530.0554
speciesParasutterella_excrementihominis-0.0490.03530.0554
speciesBacteroides_intestinalis-0.0480.03630.0567
speciesBacteroides_pectinophilus-0.0480.03780.0589
speciesLactobacillus_plantarum0.0480.03890.0604
speciesPropionibacterium_freudenreichii-0.0480.0390.0604
speciesBifidobacterium_longum-0.0470.04270.0659
familyClostridiales_Family_XI_Incertae_Sedis0.0470.04310.0663
familyMyoviridae0.0460.04620.0708
speciesEnterobacter_cloacae0.0460.04830.0738
genusSutterella-0.0450.05040.0767
speciesSlackia_piriformis-0.0450.05130.0779
speciesBacteroides_finegoldii-0.0450.05170.0782
orderViruses_noname0.0450.05220.0787
speciesLactococcus_garvieae0.0450.0540.0812
familySutterellaceae-0.0440.05450.0813
genusBurkholderiales_noname-0.0440.05480.0813
speciesBurkholderiales_bacterium_1_1_47-0.0440.05480.0813
speciesLachnospiraceae_bacterium_5_1_63FAA0.0440.05480.0813
phylumSynergistetes-0.0440.05910.0866
classSynergistia-0.0440.05910.0866
orderSynergistales-0.0440.05910.0866
familySynergistaceae-0.0440.05910.0866
familyBurkholderiales_noname-0.0430.06480.0947
genusBifidobacterium-0.0420.06620.0964
orderPseudomonadales0.0420.06710.0974
speciesC2likevirus_unclassified-0.0420.07070.102
speciesMegamonas_unclassified0.0420.0710.102
genusMegamonas0.0420.0720.103
speciesBifidobacterium_bifidum-0.0420.0720.103
speciesMegamonas_funiformis-0.0410.0740.106
genusPhascolarctobacterium-0.040.08010.114
speciesPhascolarctobacterium_succinatutens-0.040.08010.114
genusLambdalikevirus0.040.08090.115
orderBurkholderiales-0.040.08230.116
speciesEnterobacter_aerogenes0.040.08240.116
speciesBlautia_hydrogenotrophica0.040.08310.117
genusLeuconostoc0.040.08640.121
orderBifidobacteriales-0.0380.09840.137
familyBifidobacteriaceae-0.0380.09840.137
genusC2likevirus-0.0380.09960.138
genusEnterobacter0.0380.1050.145
speciesEubacterium_limosum0.0370.1090.15
speciesPrevotella_copri-0.0360.1150.158
classBetaproteobacteria-0.0360.1170.16
genusRoseburia-0.0360.1170.16
phylumFirmicutes-0.0360.1190.162
genusCoriobacteriaceae_noname-0.0350.1250.17
speciesEubacterium_cylindroides-0.0350.1290.174
speciesHoldemania_filiformis-0.0350.1290.174
speciesBacteroides_faecis-0.0350.1290.174
speciesCoriobacteriaceae_bacterium_phI-0.0350.130.175
speciesBifidobacterium_breve0.0350.1310.176
phylumBacteroidetes-0.0350.1350.179
classBacteroidia-0.0350.1350.179
orderBacteroidales-0.0350.1350.179
genusSutterellaceae_unclassified-0.0340.1410.187
speciesEggerthella_sp_1_3_56FAA0.0340.1420.187
speciesBacteroides_thetaiotaomicron0.0340.1420.187
speciesStreptococcus_phage_Sfi210.0340.1440.189
orderCoriobacteriales-0.0340.1460.191
familyCoriobacteriaceae-0.0340.1460.191
genusSlackia-0.0340.1470.192
speciesLactobacillus_amylovorus0.0330.150.194
speciesLactococcus_phage_bIL670.0330.150.194
speciesDialister_succinatiphilus-0.0330.150.194
speciesLactobacillus_sanfranciscensis0.0330.1540.199
speciesLactobacillus_delbrueckii0.0330.1560.201
speciesParvimonas_unclassified0.0320.1630.209
genusParvimonas0.0320.1640.21
speciesBacteroides_ovatus0.0320.1650.21
genusMyoviridae_noname0.0320.1660.211
speciesLeuconostoc_lactis0.0320.1670.211
speciesTuricibacter_unclassified-0.0320.1670.211
genusPyramidobacter-0.0320.1690.213
speciesPyramidobacter_piscolens-0.0320.1690.213
familyVeillonellaceae0.0320.1720.216
speciesBacteroides_eggerthii-0.030.1910.239
speciesAlistipes_unclassified0.030.1930.241
speciesRoseburia_intestinalis-0.030.1960.244
genusSiphoviridae_noname0.030.20.248
speciesRuminococcus_sp_JC3040.030.2010.249
genusDialister-0.0290.2060.255
speciesParabacteroides_johnsonii-0.0280.2180.269
speciesAnaerotruncus_colihominis-0.0280.220.27
speciesErysipelotrichaceae_bacterium_21_30.0280.2220.272
speciesPeptostreptococcaceae_noname_unclassified-0.0280.2290.28
speciesOscillibacter_sp_KLE_1745-0.0270.240.293
genusGordonibacter-0.0260.2530.307
speciesGordonibacter_pamelaeae-0.0260.2530.307
speciesPorphyromonas_uenonis-0.0260.2550.309
genusSuccinatimonas-0.0260.2660.32
speciesSuccinatimonas_hippei-0.0260.2660.32
speciesPrevotella_bivia0.0260.2670.321
genusTuricibacter-0.0250.2840.34
familySuccinivibrionaceae-0.0230.310.37
speciesBacteroides_coprocola-0.0230.3260.389
phylumActinobacteria-0.0220.3490.414
classActinobacteria-0.0220.3490.414
speciesKlebsiella_sp_MS_92_30.0210.3650.432
speciesBacteroides_sp_2_1_22-0.0210.3670.433
speciesLactobacillus_reuteri0.020.380.447
speciesBacteroides_sp_3_1_190.020.3940.463
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0190.4020.471
speciesParabacteroides_sp_D13-0.0190.4050.473
genusPeptoniphilus0.0190.4190.488
speciesBacteroides_salanitronis0.0190.4230.492
familyStaphylococcaceae0.0180.4280.496
speciesMegasphaera_unclassified0.0180.4290.496
speciesBifidobacterium_angulatum-0.0180.4320.499
genusPropionibacterium-0.0180.4440.511
speciesSutterella_parvirubra0.0180.4470.513
speciesBacteroides_salyersiae-0.0160.5010.574
genusAcidaminococcus-0.0150.5040.576
speciesBacteroides_sp_4_3_47FAA-0.0150.5170.588
speciesMegasphaera_elsdenii0.0150.5170.588
speciesLactobacillus_acidophilus-0.0150.5280.599
speciesBacteroides_massiliensis-0.0140.5450.615
phylumViruses_noname0.0140.5460.615
classViruses_noname0.0140.5460.615
speciesAcidaminococcus_unclassified-0.0140.550.618
speciesLactococcus_phage_jm20.0140.5580.626
speciesClostridium_spiroforme0.0130.5610.627
speciesAcidaminococcus_intestini0.0130.5730.639
speciesBifidobacterium_animalis0.0130.5890.656
speciesKlebsiella_phage_KP36-0.0120.6160.684
speciesBacteroides_sp_1_1_6-0.0110.6320.7
genusParabacteroides-0.0110.6370.704
speciesBacteroides_vulgatus0.0110.6390.705
speciesPrevotella_stercorea-0.010.6580.723
speciesAnaerostipes_hadrus-0.010.6590.723
speciesStreptococcus_thermophilus0.010.660.723
speciesBacteroides_plebeius-0.0090.6920.756
speciesBacteroides_clarus-0.0080.7160.776
classNegativicutes-0.0080.7190.776
orderSelenomonadales-0.0080.7190.776
speciesCoprobacillus_sp_D60.0080.7190.776
genusStaphylococcus0.0080.720.776
genusHoldemania-0.0080.720.776
speciesOscillibacter_sp_KLE_1728-0.0080.7280.782
speciesTuricibacter_sanguinis-0.0080.7290.782
orderAeromonadales0.0080.7320.783
speciesBacteroides_stercoris0.0080.7350.785
orderCaudovirales0.0080.7420.791
speciesOdoribacter_laneus-0.0080.7450.792
speciesPeptostreptococcus_anaerobius0.0070.7580.804
speciesCoprobacillus_sp_29_10.0070.760.804
speciesBacteroides_fluxus-0.0070.7670.81
speciesParabacteroides_sp_20_3-0.0070.7710.812
speciesDialister_invisus-0.0070.7760.816
speciesBacteroides_xylanisolvens0.0060.7820.82
speciesMegamonas_hypermegale-0.0050.820.857
speciesLactococcus_phage_936_sensu_lato0.0050.8210.857
speciesParabacteroides_distasonis-0.0050.830.863
speciesCollinsella_unclassified0.0050.8320.863
speciesLactobacillus_casei_paracasei0.0050.8320.863
familySiphoviridae-0.0040.8610.891
speciesMegamonas_rupellensis0.0040.8710.9
speciesSubdoligranulum_sp_4_3_54A2FAA0.0040.8740.901
speciesBifidobacterium_pseudocatenulatum0.0040.8780.903
speciesBacteroides_barnesiae0.0020.9150.939
speciesBacteroides_dorei0.0020.9170.939
familyPodoviridae-0.0020.9230.943
speciesRoseburia_unclassified-0.0020.9350.953
genusTunalikevirus-0.0020.9480.961
speciesBifidobacterium_catenulatum-0.0010.9480.961
speciesOdoribacter_unclassified0.0010.9490.961
speciesCollinsella_tanakaei-0.0010.9640.974
speciesBacteroides_oleiciplenus0.0010.9770.983
speciesLactococcus_phage_P6800.0010.9770.983
speciesRuminococcus_sp_5_1_39BFAA-0.0010.9810.985
speciesLactococcus_phage_phi70.00.990.992
familyPropionibacteriaceae0.00.9970.997
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.01250939676650.004435969059884.23089614071e-06316710.6386
Crohns diseaseSpain17660.02607594350180.003384263858492.29703960177e-0511053.67415
ObesityDenmark1691230.004355865528130.003355042111480.060479206064550718.1086
Colorectal cancerAustria64350.0171164657330.01386143410930.225752320201971132.8563
Type II diabetesChina1831850.01168294763080.007844954783750.2924352390971590852.5728
Type II diabetesSweden53920.005604238523080.005125885029080.4094985062761323044.8019
Ulcerative colitisSpain78660.005373588201020.003384263858490.5132648260391945064.1618
Type II diabetesDenmark752770.003397603672980.00372399653580.8145012432852697088.4059
Rheumatoid arthritisChina127980.009571524281680.009005162410840.8842035381522731091.0728
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382