MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-26 00:39:54 PST
Job id & description: 1700, NAPEPLD
Query type: protein
Count queries & homologs: 1, 70
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
NP_001116310.12677086CompleteK13985COG2220ProteobacteriaOxalobacter76.3492.5834.74
NP_001116310.11797938CompleteK13985COG2220LentisphaeraeVictivallis73.7971.0933.78
NP_001116310.12310779CompleteK13985COG2220unknownunknown76.3482.232.89
NP_001116310.11958193CompleteK13985COG2220unknownunknown72.5276.931.85
NP_001116310.12193839CompleteK13985COG2220unknownunknown75.5780.0632.12
NP_001116310.11892978CompleteK13985COG2220unknownunknown76.5975.9432.26
NP_001116310.11974718CompleteK13985COG2220ProteobacteriaKlebsiella79.1380.8731.33
NP_001116310.12366611CompleteK13985COG2220BacteroidetesBacteroides78.6387.0532.91
NP_001116310.12371952CompleteK13985COG2220BacteroidetesBacteroides78.6387.0532.91
NP_001116310.12366811CompleteK13985COG2220BacteroidetesBacteroides78.6387.0532.27
NP_001116310.11929418CompleteK13985COG2220ProteobacteriaKlebsiella79.6480.3231.45
NP_001116310.12372699CompleteK13985COG2220unknownunknown78.3786.7530.87
NP_001116310.12359082Lack 5'-endK13985COG2220BacteroidetesBacteroides78.6386.7932.59
NP_001116310.12369560CompleteK13985COG2220unknownunknown77.6185.8431.6
NP_001116310.12370924CompleteK13985COG2220Bacteroidetesunknown78.6387.0533.44
NP_001116310.12158440Lack 3'-endK14570COG2220unknownunknown80.4185.4331.29
NP_001116310.11896768CompleteK13985COG2220ProteobacteriaEnterobacter79.6479.6830.5
NP_001116310.12379282CompleteK13985COG2220BacteroidetesBacteroides78.8887.6130.48
NP_001116310.12365814CompleteK13985COG2220Bacteroidetesunknown75.5783.4331.44
NP_001116310.12366042CompleteK13985COG2220Bacteroidetesunknown78.6387.0531.31
NP_001116310.12381561CompleteK13985COG2220Bacteroidetesunknown77.6186.432.48
NP_001116310.12366029CompleteK13985COG2220Bacteroidetesunknown78.6387.0531.94
NP_001116310.12365928CompleteK13985COG2220unknownunknown75.5783.4331.1
NP_001116310.12365302CompleteK13985COG2220unknownunknown75.3283.1332.03
NP_001116310.11971525CompleteK13985COG2220ProteobacteriaEnterobacter79.3980.9330.28
NP_001116310.11911378CompleteK13985COG2220unknownunknown83.2181.9931.14
NP_001116310.12373145CompleteK13985COG2220BacteroidetesBacteroides75.3283.1330.9
NP_001116310.12365938CompleteK13985COG2220unknownunknown75.5783.4331.25
NP_001116310.12372102CompleteK13985COG2220Bacteroidetesunknown79.1387.6531.41
NP_001116310.12378253CompleteK13985COG2220BacteroidetesOdoribacter76.5984.8932.13
NP_001116310.12365736CompleteK13985COG2220BacteroidetesBacteroides77.6186.1431.19
NP_001116310.12366297CompleteK13985COG2220BacteroidetesBacteroides75.3283.1330.9
NP_001116310.12336220Lack 5'-endK13985COG2220BacteroidetesBacteroides77.6185.3731.19
NP_001116310.12368328CompleteK13985COG2220unknownunknown75.5783.4331.54
NP_001116310.12368976CompleteK13985COG2220Bacteroidetesunknown77.6186.1431.27
NP_001116310.12375979CompleteK13985COG2220Bacteroidetesunknown75.3283.1330.9
NP_001116310.12372632CompleteK13985COG2220Bacteroidetesunknown79.1387.6530.7
NP_001116310.12365626CompleteK13985COG2220BacteroidetesBacteroides80.9290.3631.29
NP_001116310.11723713CompleteK13985COG2220BacteroidetesBacteroides75.3270.5931.56
NP_001116310.11961211CompleteK13985COG2220ProteobacteriaOxalobacter79.6480.9831.97
NP_001116310.11744898Lack 5'-endK13985COG2220BacteroidetesBacteroides75.5771.2131.88
NP_001116310.12366267CompleteK13985COG2220BacteroidetesBacteroides77.6186.1432.48
NP_001116310.11970520CompleteK13985COG2220ProteobacteriaEnterobacter79.3980.9330.28
NP_001116310.12371729CompleteK13985COG2220Bacteroidetesunknown77.6186.1432.26
NP_001116310.12365768CompleteK13985COG2220BacteroidetesBacteroides75.3283.1330.56
NP_001116310.12023898CompleteK13985COG2220unknownunknown85.587.5730.79
NP_001116310.12370696CompleteK13985COG2220Bacteroidetesunknown75.3283.1331.1
NP_001116310.12296305Lack 5'-endK13985COG2220BacteroidetesBacteroides77.6184.6231.63
NP_001116310.11969936CompleteK13985COG2220ProteobacteriaEnterobacter80.4181.7430.22
NP_001116310.11968737CompleteK13985COG2220ProteobacteriaEnterobacter79.3980.9330.19
NP_001116310.11982015CompleteK13985COG2220ProteobacteriaCitrobacter79.1380.8730.38
NP_001116310.12142497CompleteK13985COG2220unknownunknown75.3278.6331.7
NP_001116310.11850182CompleteK13985COG2220unknownunknown77.3576.1931.39
NP_001116310.12365213CompleteK13985COG2220Bacteroidetesunknown77.6186.1431.61
NP_001116310.11960751CompleteK13985COG2220unknownunknown76.8480.9830.89
NP_001116310.12065864CompleteK13985COG2220unknownunknown81.4284.9231.5
NP_001116310.12131180CompleteK13985COG2220Bacteroidetesunknown77.8682.3930.23
NP_001116310.12110989CompleteK13985COG2220unknownunknown73.2880.2332.09
NP_001116310.11939933CompleteK13985COG2220ProteobacteriaCitrobacter72.7774.8630.0
NP_001116310.12097150CompleteK14570COG2220unknownunknown73.2880.030.38
NP_001116310.12033518Lack 5'-endK13985COG2220unknownunknown81.4284.2131.19
NP_001116310.12088831CompleteK13985COG2220Bacteroidetesunknown79.983.4330.22
NP_001116310.12116860CompleteK13985COG2220unknownunknown73.2880.4530.95
NP_001116310.12023600CompleteK13985COG2220unknownunknown85.7587.8530.0
NP_001116310.12113694CompleteK13985COG2220unknownunknown73.2880.4530.95
NP_001116310.12015135CompleteK13985COG2220unknownunknown77.3579.5630.23
NP_001116310.12057177CompleteK13985COG2220unknownunknown81.4284.9231.9
NP_001116310.12056602CompleteK13985COG2220unknownunknown81.4284.9231.38
NP_001116310.11889391CompleteK13985COG2220unknownunknown81.4281.8230.0
NP_001116310.12104056Lack both endsK13985COG2220unknownunknown77.3580.8530.32
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyBacteroidaceae0.7171.51e-2953.56e-293
genusBacteroides0.7171.51e-2953.56e-293
phylumBacteroidetes0.5685.51e-1605.31e-158
classBacteroidia0.5685.63e-1605.31e-158
orderBacteroidales0.5685.63e-1605.31e-158
phylumFirmicutes-0.5133.79e-1262.98e-124
classClostridia-0.4696.52e-1033.85e-101
orderClostridiales-0.4696.52e-1033.85e-101
speciesBacteroides_ovatus0.4431.35e-907.08e-89
genusDorea-0.442.08e-899.82e-88
orderCoriobacteriales-0.4241.37e-825.39e-81
familyCoriobacteriaceae-0.4241.37e-825.39e-81
familyRuminococcaceae-0.4221.17e-814.25e-80
speciesDorea_longicatena-0.4213.93e-811.32e-79
speciesRuminococcus_obeum-0.421.29e-804.06e-79
phylumActinobacteria-0.3891.37e-683.8e-67
classActinobacteria-0.3891.37e-683.8e-67
speciesCoprococcus_catus-0.3882.5e-686.56e-67
genusParabacteroides0.3832.76e-666.86e-65
speciesBacteroides_thetaiotaomicron0.3823.53e-668.33e-65
genusCoprococcus-0.3752.37e-635.33e-62
speciesEubacterium_hallii-0.3722.65e-625.69e-61
speciesCollinsella_aerofaciens-0.3625.08e-591.04e-57
genusCollinsella-0.3551.15e-562.26e-55
speciesDorea_formicigenerans-0.3461.39e-532.62e-52
familyPorphyromonadaceae0.3414.76e-528.64e-51
speciesCoprococcus_comes-0.3379.34e-511.63e-49
speciesRuminococcus_sp_5_1_39BFAA-0.338.45e-491.42e-47
familyLachnospiraceae-0.3278.5e-481.38e-46
speciesAnaerostipes_hadrus-0.3253.73e-475.87e-46
speciesBacteroides_xylanisolvens0.3248.16e-471.24e-45
speciesSubdoligranulum_unclassified-0.3231.5e-462.21e-45
genusSubdoligranulum-0.3215.49e-467.85e-45
speciesBacteroides_plebeius0.321.15e-451.6e-44
genusRuminococcus-0.3183.66e-454.94e-44
speciesBifidobacterium_adolescentis-0.3051.64e-412.15e-40
orderBifidobacteriales-0.3051.98e-412.46e-40
familyBifidobacteriaceae-0.3051.98e-412.46e-40
speciesBacteroides_fragilis0.3028.35e-411.01e-39
genusBifidobacterium-0.3021.17e-401.38e-39
classMethanobacteria-0.2919.77e-381.07e-36
orderMethanobacteriales-0.2919.77e-381.07e-36
familyMethanobacteriaceae-0.2919.77e-381.07e-36
speciesMethanobrevibacter_smithii-0.2884.68e-375.02e-36
genusMethanobrevibacter-0.2852.78e-362.92e-35
phylumEuryarchaeota-0.2844.55e-364.67e-35
genusOlsenella-0.2791.12e-341.12e-33
speciesEubacterium_ramulus-0.2781.39e-341.37e-33
genusFlavonifractor0.2773.59e-343.39e-33
speciesFlavonifractor_plautii0.2773.59e-343.39e-33
speciesStreptococcus_thermophilus-0.2759.49e-348.78e-33
speciesOlsenella_unclassified-0.2717.93e-337.2e-32
genusAdlercreutzia-0.2652.46e-312.15e-30
speciesAdlercreutzia_equolifaciens-0.2652.46e-312.15e-30
genusAnaerostipes-0.263.13e-302.69e-29
genusActinomyces-0.263.38e-302.85e-29
familyActinomycetaceae-0.2571.27e-291.05e-28
familyEubacteriaceae-0.2571.35e-291.1e-28
genusEubacterium-0.2571.73e-291.38e-28
speciesEubacterium_siraeum-0.2553.21e-292.53e-28
classErysipelotrichia-0.2553.62e-292.71e-28
orderErysipelotrichales-0.2553.62e-292.71e-28
familyErysipelotrichaceae-0.2553.62e-292.71e-28
phylumVerrucomicrobia-0.2521.81e-281.24e-27
classVerrucomicrobiae-0.2521.81e-281.24e-27
orderVerrucomicrobiales-0.2521.81e-281.24e-27
familyVerrucomicrobiaceae-0.2521.81e-281.24e-27
genusAkkermansia-0.2521.81e-281.24e-27
speciesAkkermansia_muciniphila-0.2521.81e-281.24e-27
speciesBacteroides_coprocola0.2441.09e-267.35e-26
orderActinomycetales-0.2431.86e-261.24e-25
speciesLachnospiraceae_bacterium_5_1_63FAA-0.2355.84e-253.83e-24
speciesKlebsiella_pneumoniae0.2322.35e-241.52e-23
phylumFusobacteria0.236.55e-244.07e-23
classFusobacteriia0.236.55e-244.07e-23
orderFusobacteriales0.236.55e-244.07e-23
speciesBacteroides_vulgatus0.2299.54e-245.85e-23
phylumProteobacteria0.2281.8e-231.09e-22
classBacilli-0.2273.11e-231.86e-22
genusErysipelotrichaceae_noname-0.2263.93e-232.32e-22
familyFusobacteriaceae0.2265.22e-233.04e-22
orderLactobacillales-0.2255.65e-233.25e-22
speciesBacteroides_stercoris0.2231.82e-221.03e-21
genusFusobacterium0.2222.2e-221.23e-21
speciesRuminococcus_gnavus0.2222.21e-221.23e-21
speciesEubacterium_biforme-0.225.12e-222.81e-21
classBetaproteobacteria0.2172.33e-211.26e-20
speciesRuminococcus_torques-0.2172.58e-211.38e-20
speciesClostridium_nexile0.2154.98e-212.64e-20
genusBlautia-0.2156.52e-213.42e-20
orderBurkholderiales0.2131.26e-206.54e-20
speciesOdoribacter_splanchnicus0.2121.9e-209.75e-20
speciesBifidobacterium_longum-0.2122.04e-201.04e-19
speciesClostridiales_bacterium_1_7_47FAA0.2112.51e-201.26e-19
speciesClostridium_leptum-0.2097.69e-203.82e-19
speciesClostridium_symbiosum0.2071.51e-197.42e-19
speciesClostridium_bolteae0.2071.79e-198.71e-19
speciesFusobacterium_ulcerans0.2053.19e-191.54e-18
genusOdoribacter0.2044.95e-192.36e-18
genusKlebsiella0.2045.28e-192.49e-18
speciesEubacterium_rectale-0.2037.2e-193.36e-18
speciesClostridium_citroniae0.2037.76e-193.59e-18
speciesParabacteroides_distasonis0.1993.27e-181.5e-17
familySutterellaceae0.1984.6e-182.09e-17
familyStreptococcaceae-0.1979.51e-184.27e-17
speciesRuminococcus_bromii-0.1951.49e-176.63e-17
genusStreptococcus-0.1951.68e-177.41e-17
genusCatenibacterium-0.1942.34e-171.01e-16
speciesCatenibacterium_mitsuokai-0.1942.34e-171.01e-16
speciesBacteroides_uniformis0.1919.25e-173.97e-16
genusButyrivibrio-0.1864.87e-162.07e-15
speciesPropionibacterium_freudenreichii-0.1865.13e-162.16e-15
speciesBilophila_unclassified0.1865.85e-162.44e-15
genusBilophila0.1856.25e-162.59e-15
genusGordonibacter-0.1857.19e-162.93e-15
speciesGordonibacter_pamelaeae-0.1857.19e-162.93e-15
speciesStreptococcus_parasanguinis-0.1857.53e-163.04e-15
genusMethanosphaera-0.184.87e-151.93e-14
speciesMethanosphaera_stadtmanae-0.184.87e-151.93e-14
familyClostridiales_noname0.185.15e-152.03e-14
genusPropionibacterium-0.1796.37e-152.48e-14
speciesButyrivibrio_crossotus-0.1796.81e-152.63e-14
speciesParabacteroides_unclassified0.1771.09e-144.18e-14
speciesMethanobrevibacter_unclassified-0.1771.12e-144.26e-14
speciesClostridium_hathewayi0.1771.17e-144.42e-14
speciesBacteroides_nordii0.1743.36e-141.26e-13
speciesFusobacterium_mortiferum0.1727.03e-142.61e-13
familyLactobacillaceae-0.1719.1e-143.36e-13
speciesLactobacillus_rhamnosus-0.1711.07e-133.92e-13
genusLactobacillus-0.1691.65e-135.99e-13
speciesFusobacterium_varium0.1682.48e-138.94e-13
speciesMitsuokella_unclassified-0.1682.5e-138.94e-13
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1682.92e-131.04e-12
familyRikenellaceae0.1673.33e-131.16e-12
genusAlistipes0.1673.33e-131.16e-12
genusMitsuokella-0.1673.85e-131.34e-12
speciesAnaerotruncus_unclassified-0.1664.57e-131.57e-12
speciesBifidobacterium_catenulatum-0.1664.76e-131.63e-12
familyPeptostreptococcaceae-0.1664.91e-131.67e-12
speciesStreptococcus_sanguinis-0.1665.35e-131.8e-12
speciesErysipelotrichaceae_bacterium_21_3-0.1631.32e-124.42e-12
speciesBifidobacterium_animalis-0.1631.38e-124.59e-12
genusPeptostreptococcaceae_noname-0.1621.65e-125.45e-12
speciesStreptococcus_salivarius-0.1612.23e-127.31e-12
speciesLactobacillus_casei_paracasei-0.163.39e-121.1e-11
genusPhascolarctobacterium-0.1594.26e-121.37e-11
speciesPhascolarctobacterium_succinatutens-0.1594.26e-121.37e-11
speciesHaemophilus_parainfluenzae0.1594.44e-121.42e-11
orderPasteurellales0.1594.93e-121.55e-11
familyPasteurellaceae0.1594.93e-121.55e-11
genusHaemophilus0.1586.3e-121.97e-11
speciesBilophila_wadsworthia0.1586.43e-122e-11
speciesAnaerostipes_unclassified0.1551.65e-115.09e-11
genusLachnospiraceae_noname-0.1542.1e-116.44e-11
speciesCoprococcus_sp_ART55_1-0.1524.25e-111.29e-10
genusParasutterella0.156.75e-112.03e-10
speciesParasutterella_excrementihominis0.156.75e-112.03e-10
genusRothia-0.1491.06e-103.17e-10
familyMicrococcaceae-0.1481.13e-103.35e-10
orderBacillales-0.1471.7e-105.02e-10
genusSolobacterium-0.1453.31e-109.64e-10
speciesSolobacterium_moorei-0.1453.31e-109.64e-10
speciesLactococcus_phage_P680-0.1443.6e-101.04e-09
speciesRoseburia_hominis-0.1444.25e-101.22e-09
classGammaproteobacteria0.1444.53e-101.3e-09
speciesCoprococcus_eutactus-0.1434.81e-101.37e-09
genusTuricibacter-0.1435.33e-101.51e-09
speciesTuricibacter_sanguinis-0.1435.57e-101.56e-09
familyBacillales_noname-0.1426.91e-101.92e-09
genusGemella-0.1426.91e-101.92e-09
orderEnterobacteriales0.1427.16e-101.96e-09
familyEnterobacteriaceae0.1427.16e-101.96e-09
speciesClostridium_sp_L2_50-0.1427.77e-102.12e-09
familyPropionibacteriaceae-0.1418.03e-102.18e-09
classDeltaproteobacteria0.1418.8e-102.35e-09
orderDesulfovibrionales0.1418.8e-102.35e-09
familyDesulfovibrionaceae0.1418.8e-102.35e-09
speciesBacteroides_finegoldii0.1411.03e-092.73e-09
familyBurkholderiales_noname0.141.08e-092.85e-09
genusBurkholderiales_noname0.141.29e-093.36e-09
speciesBurkholderiales_bacterium_1_1_470.141.29e-093.36e-09
speciesMegasphaera_micronuciformis0.1381.88e-094.88e-09
speciesPrevotella_buccae0.1382.06e-095.31e-09
genusSiphoviridae_noname-0.1382.14e-095.49e-09
speciesVeillonella_parvula0.1382.15e-095.49e-09
speciesRuminococcus_sp_JC304-0.1354.08e-091.04e-08
speciesRothia_mucilaginosa-0.1354.91e-091.24e-08
genusClostridiales_noname0.1345.61e-091.41e-08
speciesLactobacillus_delbrueckii-0.1338.07e-092.02e-08
speciesPeptostreptococcaceae_noname_unclassified-0.1329.02e-092.24e-08
speciesStreptococcus_mutans-0.1321.01e-082.5e-08
familyOscillospiraceae0.131.49e-083.64e-08
genusOscillibacter0.131.49e-083.64e-08
speciesBacteroides_cellulosilyticus0.1292.19e-085.33e-08
speciesVeillonella_dispar0.1282.47e-085.98e-08
speciesClostridium_sp_ATCC_BAA_4420.1282.92e-087.03e-08
speciesTuricibacter_unclassified-0.1264.49e-081.08e-07
genusPseudoflavonifractor-0.1265.13e-081.22e-07
speciesPseudoflavonifractor_capillosus-0.1265.13e-081.22e-07
speciesStreptococcus_vestibularis-0.1246.81e-081.61e-07
speciesMegamonas_rupellensis0.1246.95e-081.63e-07
genusLactococcus-0.1221.35e-073.15e-07
speciesDesulfovibrio_piger-0.1211.51e-073.51e-07
speciesBacteroides_salyersiae0.121.79e-074.14e-07
speciesVeillonella_unclassified0.121.93e-074.44e-07
phylumViruses_noname-0.1192.31e-075.27e-07
classViruses_noname-0.1192.31e-075.27e-07
speciesMegamonas_unclassified0.1192.34e-075.31e-07
genusMegamonas0.1192.42e-075.47e-07
speciesCoprobacillus_unclassified0.1192.5e-075.62e-07
genusVeillonella0.1192.64e-075.91e-07
speciesOscillibacter_unclassified0.1174.34e-079.66e-07
speciesLactococcus_lactis-0.1174.36e-079.66e-07
speciesBacteroides_pectinophilus-0.1156.08e-071.34e-06
speciesStreptococcus_gordonii-0.1138.85e-071.94e-06
familyAcidaminococcaceae-0.1139.48e-072.07e-06
speciesAlistipes_putredinis0.1121.15e-062.5e-06
speciesRuminococcus_callidus-0.1121.33e-062.88e-06
speciesBacteroides_massiliensis0.1111.42e-063.06e-06
speciesParabacteroides_goldsteinii0.1111.46e-063.13e-06
speciesLachnospiraceae_bacterium_2_1_46FAA0.111.84e-063.93e-06
speciesBacteroides_oleiciplenus0.1092.27e-064.83e-06
speciesClostridium_asparagiforme0.1082.8e-065.93e-06
familySiphoviridae-0.1083.14e-066.62e-06
genusEscherichia0.1073.54e-067.43e-06
genusLeuconostoc-0.1073.71e-067.75e-06
speciesClostridium_bartlettii-0.1063.98e-068.27e-06
genusButyricimonas0.1064.01e-068.27e-06
speciesButyricimonas_synergistica0.1064.01e-068.27e-06
speciesBacteroides_caccae0.1064.77e-069.79e-06
speciesBacteroides_intestinalis0.1064.83e-069.87e-06
speciesMitsuokella_multacida-0.1055.27e-061.07e-05
genusFaecalibacterium-0.1055.49e-061.11e-05
speciesFaecalibacterium_prausnitzii-0.1055.49e-061.11e-05
genusCoprobacillus0.1046.03e-061.21e-05
genusDialister-0.1047.28e-061.46e-05
genusCitrobacter0.1021.05e-052.09e-05
speciesAnaerotruncus_colihominis0.1011.1e-052.18e-05
genusEnterobacter0.1011.21e-052.39e-05
speciesClostridium_clostridioforme0.1011.3e-052.56e-05
speciesAlistipes_senegalensis-0.11.38e-052.7e-05
speciesParabacteroides_merdae0.11.57e-053.06e-05
speciesEscherichia_coli0.11.62e-053.15e-05
speciesCitrobacter_freundii0.0991.96e-053.79e-05
speciesLachnospiraceae_bacterium_6_1_63FAA0.0991.97e-053.8e-05
speciesEnterobacter_cloacae0.0982.36e-054.53e-05
speciesCitrobacter_unclassified0.0972.49e-054.76e-05
familyEnterococcaceae-0.0963e-055.71e-05
speciesBifidobacterium_bifidum-0.0953.63e-056.88e-05
genusEnterococcus-0.0953.76e-057.1e-05
speciesEubacterium_ventriosum-0.0944.49e-058.44e-05
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0945.02e-059.4e-05
genusClostridiaceae_noname0.0935.85e-050.000109
speciesClostridiaceae_bacterium_JC1180.0935.85e-050.000109
speciesRuminococcus_lactaris-0.0926.56e-050.000121
speciesPrevotella_copri-0.0926.79e-050.000125
genusAnaerotruncus-0.0926.81e-050.000125
speciesBacteroides_dorei0.0926.92e-050.000127
speciesBifidobacterium_dentium-0.0927.37e-050.000134
speciesLactobacillus_gasseri-0.099.74e-050.000177
genusPantoea0.099.84e-050.000177
speciesPantoea_unclassified0.099.84e-050.000177
speciesMegamonas_hypermegale0.090.0001030.000185
speciesBacteroides_coprophilus0.0890.0001140.000204
orderCaudovirales-0.0890.0001170.000208
speciesVeillonella_atypica0.0890.0001220.000216
speciesEggerthella_sp_1_3_56FAA-0.0880.0001320.000233
speciesRuminococcus_champanellensis-0.0880.0001360.00024
genusBarnesiella-0.0870.0001620.000283
speciesBarnesiella_intestinihominis-0.0870.0001620.000283
familyPrevotellaceae-0.0870.0001630.000284
speciesEnterococcus_faecium-0.0860.0001820.000316
speciesClostridium_ramosum0.0850.0002320.000401
speciesBlautia_hydrogenotrophica-0.0840.0002740.000472
genusPeptostreptococcus-0.0840.0002810.000482
speciesLactococcus_phage_jm2-0.0840.0002950.000504
speciesEnterobacter_aerogenes0.0830.0003340.000569
speciesLachnospiraceae_bacterium_2_1_58FAA0.0820.0004090.000694
speciesEubacterium_cylindroides-0.0810.0004210.000712
genusRuminococcaceae_noname-0.0810.0004480.000753
speciesRuminococcaceae_bacterium_D16-0.0810.0004480.000753
speciesLactobacillus_ruminis-0.0810.0004660.00078
genusDesulfovibrio-0.080.0005130.000856
speciesRoseburia_unclassified-0.080.0005430.000902
speciesDorea_unclassified0.080.0005460.000904
speciesStreptococcus_mitis_oralis_pneumoniae-0.080.000560.000924
speciesClostridium_spiroforme-0.0780.0007450.00123
genusMorganella0.0780.0007650.00125
speciesMorganella_morganii0.0780.0007650.00125
speciesParaprevotella_unclassified-0.0770.0008670.00141
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0770.0008820.00143
genusParaprevotella-0.0770.00090.00145
genusParvimonas-0.0770.000920.00148
speciesParvimonas_unclassified-0.0770.0009280.00149
familyClostridiales_Family_XI_Incertae_Sedis-0.0760.001080.00173
speciesKlebsiella_sp_MS_92_30.0750.001190.0019
speciesSutterella_parvirubra0.0750.001210.00192
orderPseudomonadales-0.0740.00130.00205
speciesDialister_invisus-0.0740.00130.00205
speciesBacteroides_sp_2_1_220.0740.001350.00212
speciesStreptococcus_anginosus-0.0740.001390.00218
speciesParabacteroides_johnsonii0.0720.001790.0028
speciesPeptostreptococcus_stomatis-0.0720.00190.00296
speciesEggerthella_lenta-0.0710.002010.00312
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0710.002160.00334
genusCampylobacter0.0710.002280.00352
speciesBacteroides_faecis0.070.002360.00363
speciesMegamonas_funiformis0.070.002370.00363
speciesWeissella_confusa0.070.002480.00379
speciesGemella_morbillorum-0.070.002570.00391
speciesStreptococcus_infantarius0.0690.002660.00404
speciesDialister_succinatiphilus-0.0690.002780.00421
classEpsilonproteobacteria0.0690.002910.00437
orderCampylobacterales0.0690.002910.00437
familyCampylobacteraceae0.0680.003470.0052
speciesStreptococcus_australis-0.0660.004020.006
familyClostridiaceae0.0660.00430.0064
speciesEnterococcus_faecalis-0.0660.004410.00653
speciesAlistipes_shahii0.0660.004410.00653
speciesOscillibacter_sp_KLE_17450.0660.004440.00655
speciesOscillibacter_sp_KLE_17280.0660.004550.00669
genusMegasphaera0.0650.004880.00715
speciesBifidobacterium_pseudocatenulatum0.0640.005330.00779
genusSutterellaceae_unclassified0.0640.005440.00792
speciesLactobacillus_acidophilus-0.0640.005470.00794
speciesBacteroides_sp_3_1_190.0640.00570.00825
speciesParaprevotella_clara-0.0640.005740.00829
speciesBifidobacterium_angulatum-0.0630.006310.00908
genusClostridium0.0630.006510.00934
speciesLactobacillus_salivarius0.0630.00660.00944
speciesLactobacillus_plantarum-0.0620.007170.0102
speciesAggregatibacter_segnis0.0610.008360.0119
speciesEubacterium_sp_3_1_310.060.009020.0128
speciesLactococcus_phage_phi7-0.060.009130.0129
speciesCollinsella_unclassified0.0590.01060.0149
genusOxalobacter-0.0590.01110.0155
speciesOxalobacter_formigenes-0.0590.01110.0155
speciesFusobacterium_nucleatum0.0570.01310.0183
familyOxalobacteraceae-0.0570.0140.0195
genusWeissella0.0560.01470.0204
genusPyramidobacter0.0560.0160.022
genusPrevotella-0.0560.0160.022
speciesPyramidobacter_piscolens0.0560.0160.022
orderViruses_noname-0.0550.01770.0243
speciesPeptostreptococcus_anaerobius-0.0540.01870.0256
speciesHoldemania_filiformis-0.0540.01910.0261
speciesProteus_mirabilis0.0540.01990.0271
phylumSynergistetes0.0530.02080.028
classSynergistia0.0530.02080.028
orderSynergistales0.0530.02080.028
familySynergistaceae0.0530.02080.028
speciesHoldemania_sp_AP20.0530.02290.0307
familyLeuconostocaceae-0.0520.02380.0318
speciesCampylobacter_concisus0.0520.02460.0328
speciesSutterella_wadsworthensis-0.0510.02650.0352
speciesButyrivibrio_unclassified-0.0510.02810.0373
genusStaphylococcus-0.050.03060.0405
genusAggregatibacter0.050.03110.041
speciesCollinsella_tanakaei0.050.03170.0417
genusC2likevirus-0.0490.03340.0437
speciesBacteroides_sp_4_3_47FAA0.0490.03340.0437
speciesC2likevirus_unclassified-0.0490.03440.0449
speciesLactobacillus_reuteri-0.0470.04170.0542
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0460.04710.0611
speciesRoseburia_inulinivorans0.0460.04730.0612
speciesMegasphaera_elsdenii-0.0450.05070.0654
familyBacteroidales_noname-0.0450.05130.0656
genusBacteroidales_noname-0.0450.05130.0656
speciesBacteroidales_bacterium_ph8-0.0450.05130.0656
genusActinobacillus0.0450.05280.0672
speciesActinobacillus_unclassified0.0450.05280.0672
speciesBacteroides_salanitronis0.0450.05430.0689
speciesBacteroides_clarus0.0440.05710.0723
speciesErysipelotrichaceae_bacterium_6_1_45-0.0430.06080.0767
speciesLachnospiraceae_bacterium_5_1_57FAA0.0430.06280.0788
speciesEscherichia_unclassified0.0430.06280.0788
speciesPrevotella_bivia0.0430.06420.0804
speciesBacteroides_sp_1_1_60.0420.06850.0855
speciesLactobacillus_fermentum-0.0420.06880.0857
familyStaphylococcaceae-0.0420.06980.0867
speciesCollinsella_intestinalis0.0420.070.0867
speciesBlautia_producta0.0420.07180.0887
speciesAlistipes_finegoldii0.0410.07680.0945
speciesEubacterium_dolichum0.0410.07690.0945
genusProteus0.0410.07790.0955
speciesStreptococcus_pasteurianus0.0410.07830.0957
classNegativicutes-0.0410.07940.0966
orderSelenomonadales-0.0410.07940.0966
speciesSubdoligranulum_sp_4_3_54A2FAA-0.040.08460.103
speciesKlebsiella_unclassified0.0380.09690.117
speciesClostridium_perfringens0.0380.09780.118
speciesEggerthella_unclassified0.0380.09840.118
speciesLachnospiraceae_bacterium_1_4_56FAA0.0380.1010.121
speciesOdoribacter_unclassified-0.0370.1070.128
genusSutterella-0.0370.1140.136
speciesOdoribacter_laneus-0.0360.1180.141
speciesBacteroides_barnesiae0.0360.1240.147
speciesParabacteroides_sp_D13-0.0340.1440.171
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0320.1620.192
speciesBacteroides_fluxus0.0320.1640.194
speciesBacteroides_eggerthii0.030.190.224
speciesClostridium_sp_KLE_17550.030.1910.224
speciesHaemophilus_sputorum0.030.1920.225
speciesAlistipes_onderdonkii0.030.1970.23
genusRoseburia0.030.20.233
speciesBifidobacterium_breve-0.0290.2070.241
speciesAcidaminococcus_intestini0.0290.2170.252
speciesLeuconostoc_lactis0.0280.230.266
speciesAlistipes_unclassified-0.0270.2370.274
speciesAcidaminococcus_unclassified-0.0270.2490.287
speciesHoldemania_unclassified-0.0260.2690.309
speciesParaprevotella_xylaniphila-0.0260.270.309
speciesLactococcus_phage_bIL670.0250.2770.317
familyVeillonellaceae0.0250.2790.318
speciesLactobacillus_crispatus-0.0250.2810.32
familyViruses_noname-0.0240.2980.337
genusViruses_noname-0.0240.2980.337
genusEggerthella0.0240.2990.338
speciesLactobacillus_vaginalis-0.0240.310.349
speciesErysipelotrichaceae_bacterium_3_1_530.0230.3260.366
speciesAcidaminococcus_fermentans-0.0230.330.37
genusHoldemania-0.0220.3310.37
genusButyricicoccus0.0220.3480.387
speciesButyricicoccus_pullicaecorum0.0220.3480.387
genusAcidaminococcus-0.0220.3520.391
orderAeromonadales0.0210.3570.396
genusAcidaminococcaceae_unclassified0.0210.3610.399
speciesKlebsiella_oxytoca0.0210.3640.401
speciesLactobacillus_amylovorus-0.020.3790.417
speciesLactococcus_phage_936_sensu_lato-0.020.3850.423
speciesAlistipes_indistinctus-0.020.3950.433
speciesRoseburia_intestinalis-0.0180.4480.489
speciesEubacterium_eligens-0.0170.4590.5
speciesLactobacillus_oris-0.0170.4620.502
genusCoriobacteriaceae_noname0.0160.4950.537
speciesKlebsiella_phage_KP360.0150.5070.549
speciesCoriobacteriaceae_bacterium_phI0.0150.510.551
speciesWeissella_cibaria0.0150.5170.557
genusMyoviridae_noname0.0150.520.559
speciesAlistipes_sp_AP110.0140.5340.573
genusTunalikevirus0.0140.5350.573
genusPeptoniphilus0.0140.5380.575
speciesHaemophilus_paraphrohaemolyticus0.0140.5450.579
speciesStreptococcus_lutetiensis0.0140.5460.579
speciesSlackia_piriformis-0.0140.5460.579
familyPodoviridae0.0130.5710.604
speciesEubacterium_limosum-0.0130.5880.621
familyMyoviridae0.0120.5960.628
speciesEnterobacteria_phage_HK5440.0120.6010.631
speciesLactobacillus_mucosae0.0120.6020.631
speciesCoprobacillus_sp_29_1-0.0120.6160.645
genusPorphyromonas-0.010.6580.687
genusSlackia-0.0090.7070.737
speciesDesulfovibrio_desulfuricans-0.0090.710.738
speciesLactobacillus_sanfranciscensis0.0080.7160.743
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0070.7460.772
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0070.7490.774
genusLambdalikevirus0.0060.7910.815
speciesAlistipes_sp_HGB5-0.0060.7930.815
speciesMegasphaera_unclassified0.0060.8020.823
speciesParabacteroides_sp_20_30.0050.8140.833
familySuccinivibrionaceae-0.0050.8240.842
speciesCoprobacillus_sp_D6-0.0050.8370.853
speciesPrevotella_stercorea-0.0030.8980.913
speciesPorphyromonas_asaccharolytica-0.0030.9110.925
genusCoprobacter-0.0020.9350.944
speciesCoprobacter_fastidiosus-0.0020.9350.944
speciesPorphyromonas_uenonis0.0020.9360.944
genusSuccinatimonas-0.0010.9540.958
speciesSuccinatimonas_hippei-0.0010.9540.958
speciesLactococcus_garvieae0.0010.9580.96
speciesStreptococcus_phage_Sfi21-0.0010.9780.978
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.09153914921080.05686931957410.07553614369761284642.7132
Type II diabetesDenmark752770.04052542062740.0438054296240.1888743104031269741.62
Colorectal cancerAustria64350.0163672999160.01266687959840.3506995237811381546.7418
Ulcerative colitisSpain78660.04933727232570.05686931957410.4144777913051711556.4591
ObesityDenmark1691230.04417191451690.04408932630940.4519116463891823859.9717
Type II diabetesChina1831850.08675924395310.08230420211740.4650681832722023166.8594
Type II diabetesSweden53920.02858460619490.01578227975890.5584313997831761559.6512
Liver cirrhosisChina1201140.1035193547410.1107278055090.7930655669262767392.9591
Rheumatoid arthritisChina127980.05991991013740.06124489183250.9728129900112934297.8491
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382