MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-26 15:53:25 PST
Job id & description: 1713, 78
Query type: protein
Count queries & homologs: 78, 78
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
DOF012_GL0002350528470CompleteK01580COG0076unknownunknown100.0100.0100.0
MH0252_GL0185036833595CompleteK13745COG0076unknownunknown100.0100.0100.0
V1.UC50-1_GL0068392908708CompleteK01593COG0076unknownunknown100.0100.0100.0
MH0203_GL0100465954219CompleteK01593COG0076unknownunknown100.0100.0100.0
SZEY-81A_GL0081586947285Lack 3'-endK13745COG0076ProteobacteriaHaemophilus100.0100.0100.0
V1.FI18_GL0086917966151CompleteK01593COG0076unknownunknown100.0100.0100.0
MH0188_GL0107376989288CompleteK01593COG0076unknownunknown100.0100.0100.0
V1.FI11_GL01862311012287CompleteK13745COG0076unknownunknown100.0100.0100.0
V1.CD3-0-PN_GL0052460991403Lack 5'-endK01593COG0076unknownunknown100.0100.0100.0
1045856.EcWSU1_03023977962CompleteK13745COG0076ProteobacteriaEnterobacter100.0100.0100.0
1125630.KPHS_27570972814CompleteK13745COG0076ProteobacteriaKlebsiella100.0100.0100.0
545696.HOLDEFILI_021671019564CompleteK13745COG0076FirmicutesHoldemania100.0100.0100.0
ED15A_GL00114331018552CompleteK13745COG0076unknownunknown100.0100.0100.0
NLM027_GL0057631987209CompleteK13745COG0076ProteobacteriaEnterobacter100.0100.0100.0
1006551.KOX_20315988111CompleteK13745COG0076ProteobacteriaKlebsiella100.0100.0100.0
469595.CSAG_01597988211CompleteK13745COG0076ProteobacteriaCitrobacter100.0100.0100.0
MH0382_GL01264031010873CompleteK01593COG0076unknownunknown100.0100.0100.0
V1.UC21-4_GL0097398996800CompleteK13745COG0076ProteobacteriaEnterobacter100.0100.0100.0
SZEY-40A_GL0027430997380CompleteK13745COG0076ProteobacteriaEnterobacter100.0100.0100.0
T2D-108A_GL0143667997441CompleteK13745COG0076ProteobacteriaEnterobacter100.0100.0100.0
V1.UC35-4_GL02255231046061CompleteK01593COG0076unknownunknown100.0100.0100.0
HT14A_GL00182691035762CompleteK13745COG0076unknownunknown100.0100.0100.0
DLM013_GL00352131040521CompleteK01593COG0076unknownunknown100.0100.0100.0
T2D-62A_GL00231821058454CompleteK01593COG0076Firmicutesunknown100.0100.0100.0
O2.CD3-0-PT_GL00119911062255CompleteK01593COG0076unknownunknown100.0100.0100.0
MH0239_GL00861921072049CompleteK01618COG0076unknownunknown100.0100.0100.0
MH0433_GL02014871050352CompleteK13745COG0076unknownunknown100.0100.0100.0
V1.CD12-3_GL01124631062773CompleteK01593COG0076FirmicutesBlautia100.0100.0100.0
V1.CD46-0_GL00882211062982CompleteK01593COG0076FirmicutesBlautia100.0100.0100.0
O2.CD3-0-PT_GL01399601073535CompleteK01618COG0076unknownunknown100.0100.0100.0
O2.CD3-0-PT_GL00548181079212CompleteK01593COG0076unknownunknown100.0100.0100.0
763536994-stool2_revised1111887CompleteK01593COG0076unknownunknown100.0100.0100.0
MH0088_GL00023801082374CompleteK01593COG0076Firmicutesunknown100.0100.0100.0
MH0403_GL00713321128241CompleteK13745COG0076unknownunknown100.0100.0100.0
T2D-62A_GL00061281131089CompleteK01618COG0076unknownunknown100.0100.0100.0
MH0229_GL02094801268031Lack 5'-endK01593COG0076unknownunknown100.0100.0100.0
T2D-78A_GL00242401534424Lack 5'-endK01593COG0076FirmicutesBlautia100.0100.0100.0
DLM013_GL00259991958762Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
MH0370_GL00330992148555Lack 5'-endK01593COG0076unknownunknown100.0100.0100.0
MH0233_GL01140072330195CompleteK01593COG0076unknownunknown100.0100.0100.0
V1.FI20_GL00203912450556Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
159753524-stool1_revised2573449Lack both endsK01593COG0076unknownunknown100.0100.0100.0
V1.UC3-2_GL00204462556599Lack 5'-endK13745COG0076ProteobacteriaHaemophilus100.0100.0100.0
158499257-stool2_revised2660258Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
MH0433_GL02231572868083Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
NOM026_GL00135162873095Lack 3'-endK13745COG0076ProteobacteriaHaemophilus100.0100.0100.0
V1.UC30-0_GL00526943048555Lack 3'-endK01593COG0076FirmicutesBlautia100.0100.0100.0
763840445-stool2_revised3133612Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
159814214-stool2_revised3133286Lack 5'-endK13745COG0076ProteobacteriaHaemophilus100.0100.0100.0
MH0370_GL00552123285876Lack 3'-endK01593COG0076unknownunknown100.0100.0100.0
V1.CD12-3_GL00035613404230Lack 3'-endK01593COG0076Firmicutesunknown100.0100.0100.0
T2D-76A_GL00371403628642Lack 3'-endK13745COG0076ProteobacteriaKlebsiella100.0100.0100.0
T2D-59A_GL01838423628483CompleteK13745COG0076unknownunknown100.0100.0100.0
V1.UC13-3_GL00818543814851Lack 3'-endK13745COG0076unknownunknown100.0100.0100.0
O2.UC48-1_GL02232553930102CompleteK01618COG0076unknownunknown100.0100.0100.0
V1.UC11-5_GL00981824182957Lack 3'-endK01593COG0076unknownunknown100.0100.0100.0
MH0257_GL00016014130345Lack both endsunknownCOG0076unknownunknown100.0100.0100.0
V1.CD3-0-PN_GL00402074355115Lack 3'-endK01593COG0076FirmicutesBlautia100.0100.0100.0
V1.UC31-0_GL00261594335176CompleteK13745COG0076unknownunknown100.0100.0100.0
T2D-132A_GL00372714294395Lack 5'-endK13745COG0076ProteobacteriaEnterobacter100.0100.0100.0
O2.CD3-0-PT_GL00702784418726Lack both endsK01593COG0076unknownunknown100.0100.0100.0
V1.FI18_GL00571274539039Lack both endsK01593COG0076unknownunknown100.0100.0100.0
MH0319_GL01534934601742Lack both endsK01580COG0076unknownunknown100.0100.0100.0
763840445-stool2_revised4665620Lack 3'-endK13745COG0076unknownunknown100.0100.0100.0
O2.UC11-1_GL00534374778238Lack 3'-endK01593COG0076unknownunknown100.0100.0100.0
763982056-stool1_revised4920344Lack both endsK01593COG0076unknownunknown100.0100.0100.0
O2.UC32-1_GL00597075156205Lack both endsK13745COG0076unknownunknown100.0100.0100.0
MH0425_GL00874915182140Lack both endsK13745COG0076ProteobacteriaCitrobacter100.0100.0100.0
T2D-25A_GL00392775252490Lack 3'-endK01618COG0076unknownunknown100.0100.0100.0
V1.UC30-0_GL01390185308467Lack 5'-endK13745COG0076FirmicutesBlautia100.0100.0100.0
MH0393_GL00082425507944Lack both endsK01593COG0076unknownunknown100.0100.0100.0
MH0272_GL00051015503776CompleteK13745COG0076ActinobacteriaBifidobacterium100.0100.0100.0
V1.UC42-0_GL00654925518560Lack both endsK01593COG0076unknownunknown100.0100.0100.0
O2.UC6-1_GL00576755608870Lack both endsK01593;K01618COG0076unknownunknown100.0100.0100.0
O2.UC48-0_GL02624025810388Lack 3'-endK01618COG0076unknownunknown100.0100.0100.0
V1.CD4-0-PN_GL00058276291969Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
V1.UC26-0_GL01214426400765Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
O2.UC48-1_GL01567917581895Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesKlebsiella_pneumoniae0.3882.59e-681.22e-65
genusKlebsiella0.3854.61e-671.09e-64
orderEnterobacteriales0.3744.22e-634.98e-61
familyEnterobacteriaceae0.3744.22e-634.98e-61
classGammaproteobacteria0.3491.27e-541.2e-52
speciesEnterobacter_cloacae0.3152.19e-441.72e-42
genusEnterobacter0.3131.02e-436.88e-42
genusBlautia0.2876.71e-373.96e-35
phylumProteobacteria0.2878.08e-374.24e-35
genusEscherichia0.271.12e-325.29e-31
speciesRuminococcus_gnavus0.2651.62e-316.95e-30
speciesClostridium_bolteae0.2621.21e-304.76e-29
speciesEscherichia_coli0.2521.55e-285.63e-27
speciesCitrobacter_freundii0.255.17e-281.74e-26
speciesKlebsiella_oxytoca0.2499.71e-283.06e-26
genusClostridium0.2481.42e-274.19e-26
speciesLachnospiraceae_bacterium_6_1_63FAA0.2472.4e-276.37e-26
familyClostridiaceae0.2472.43e-276.37e-26
speciesLachnospiraceae_bacterium_1_4_56FAA0.2462.79e-276.93e-26
speciesCitrobacter_unclassified0.2431.95e-264.6e-25
genusCitrobacter0.2422.99e-266.72e-25
genusEggerthella0.2322.69e-245.77e-23
speciesEscherichia_unclassified0.2281.68e-233.45e-22
speciesEggerthella_unclassified0.2272.95e-235.8e-22
classBacilli0.2231.67e-223.15e-21
orderLactobacillales0.2222.52e-224.57e-21
familyStreptococcaceae0.2214.06e-226.86e-21
speciesClostridium_hathewayi0.2214.07e-226.86e-21
genusPantoea0.226.17e-229.71e-21
speciesPantoea_unclassified0.226.17e-229.71e-21
genusCoprobacillus0.226.59e-221e-20
speciesClostridium_symbiosum0.2199.07e-221.34e-20
speciesErysipelotrichaceae_bacterium_21_30.2171.88e-212.69e-20
speciesClostridium_ramosum0.2156.06e-218.41e-20
genusStreptococcus0.2131.14e-201.54e-19
phylumBacteroidetes-0.2089.41e-201.17e-18
classBacteroidia-0.2089.44e-201.17e-18
orderBacteroidales-0.2089.44e-201.17e-18
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2053.62e-194.38e-18
familyBacillales_noname0.2038.27e-199.52e-18
genusGemella0.2038.27e-199.52e-18
speciesErysipelotrichaceae_bacterium_2_2_44A0.2011.69e-181.9e-17
genusFlavonifractor0.2011.97e-182.11e-17
speciesFlavonifractor_plautii0.2011.97e-182.11e-17
speciesClostridium_clostridioforme0.1994.35e-184.56e-17
orderBacillales0.1951.72e-171.76e-16
speciesRuminococcus_torques0.1933.23e-173.24e-16
speciesCoprobacillus_unclassified0.1934.11e-174.04e-16
speciesBlautia_hydrogenotrophica0.1924.64e-174.47e-16
classErysipelotrichia0.1925.13e-174.66e-16
orderErysipelotrichales0.1925.13e-174.66e-16
familyErysipelotrichaceae0.1925.13e-174.66e-16
familyEnterococcaceae0.191.32e-161.18e-15
genusEnterococcus0.1891.49e-161.3e-15
speciesBlautia_producta0.1882.67e-162.29e-15
speciesStreptococcus_mitis_oralis_pneumoniae0.1857.77e-166.55e-15
speciesClostridiales_bacterium_1_7_47FAA0.1841.12e-159.27e-15
orderActinomycetales0.1831.42e-151.16e-14
familyActinomycetaceae0.1831.61e-151.29e-14
familyClostridiales_noname0.1831.75e-151.38e-14
genusFusobacterium0.1821.83e-151.42e-14
familyLeuconostocaceae0.1821.92e-151.46e-14
genusSolobacterium0.1822.24e-151.65e-14
speciesSolobacterium_moorei0.1822.24e-151.65e-14
familyFusobacteriaceae0.1813.61e-152.62e-14
speciesOdoribacter_splanchnicus-0.184.19e-152.97e-14
speciesAlistipes_shahii-0.184.22e-152.97e-14
speciesStreptococcus_salivarius0.184.59e-153.19e-14
genusActinomyces0.184.88e-153.34e-14
phylumFusobacteria0.1789.78e-156.41e-14
classFusobacteriia0.1789.78e-156.41e-14
orderFusobacteriales0.1789.78e-156.41e-14
orderCoriobacteriales0.1743.19e-142.03e-13
familyCoriobacteriaceae0.1743.19e-142.03e-13
genusOdoribacter-0.1735.6e-143.52e-13
speciesClostridium_citroniae0.1728.13e-145.05e-13
speciesStreptococcus_sanguinis0.1719.43e-145.78e-13
speciesBifidobacterium_dentium0.171.18e-137.14e-13
genusErysipelotrichaceae_noname0.1691.79e-131.07e-12
speciesAnaerotruncus_colihominis0.1664.37e-132.58e-12
speciesEggerthella_lenta0.1657.24e-134.22e-12
genusPeptostreptococcus0.1649.52e-135.48e-12
phylumActinobacteria0.1641.04e-125.84e-12
classActinobacteria0.1641.04e-125.84e-12
speciesClostridium_asparagiforme0.1631.29e-127.16e-12
speciesEubacterium_dolichum0.1621.96e-121.08e-11
speciesStreptococcus_australis0.1612.3e-121.25e-11
familyPeptostreptococcaceae0.1612.51e-121.35e-11
genusAggregatibacter0.1612.91e-121.54e-11
speciesLachnospiraceae_bacterium_5_1_57FAA0.1586.47e-123.39e-11
genusGordonibacter0.1577.55e-123.87e-11
speciesGordonibacter_pamelaeae0.1577.55e-123.87e-11
speciesFusobacterium_nucleatum0.1578.13e-124.13e-11
speciesStreptococcus_anginosus0.1551.55e-117.78e-11
speciesLachnospiraceae_bacterium_2_1_58FAA0.1532.83e-111.41e-10
speciesStreptococcus_parasanguinis0.1532.86e-111.41e-10
speciesAggregatibacter_segnis0.1532.89e-111.41e-10
speciesEnterobacter_aerogenes0.1515.53e-112.65e-10
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1515.56e-112.65e-10
genusWeissella0.1515.99e-112.83e-10
speciesClostridium_nexile0.1462.37e-101.11e-09
speciesClostridium_perfringens0.1444.08e-101.89e-09
speciesEnterococcus_faecalis0.1426.38e-102.92e-09
speciesWeissella_cibaria0.1426.82e-103.1e-09
orderBurkholderiales-0.1426.96e-103.13e-09
genusPeptostreptococcaceae_noname0.1427.53e-103.35e-09
speciesKlebsiella_sp_MS_92_30.1418e-103.53e-09
speciesAlistipes_senegalensis-0.1419.75e-104.26e-09
speciesPeptostreptococcus_stomatis0.141.08e-094.68e-09
speciesWeissella_confusa0.141.16e-094.98e-09
genusLachnospiraceae_noname0.141.33e-095.66e-09
genusHoldemania0.1391.45e-096.11e-09
speciesAnaerostipes_unclassified0.1391.73e-097.23e-09
speciesLactococcus_garvieae0.1381.92e-097.95e-09
speciesErysipelotrichaceae_bacterium_6_1_450.1382.3e-099.44e-09
speciesSubdoligranulum_sp_4_3_54A2FAA0.1382.35e-099.56e-09
speciesEnterococcus_faecium0.1372.98e-091.2e-08
speciesStreptococcus_vestibularis0.1363.66e-091.46e-08
familySutterellaceae-0.1363.81e-091.51e-08
speciesAlistipes_finegoldii-0.1354.42e-091.74e-08
speciesRothia_mucilaginosa0.1338.15e-093.14e-08
familyRikenellaceae-0.1338.17e-093.14e-08
genusAlistipes-0.1338.17e-093.14e-08
speciesStreptococcus_gordonii0.1338.76e-093.33e-08
classBetaproteobacteria-0.1329.12e-093.44e-08
familyMicrococcaceae0.1311.34e-085.02e-08
genusRothia0.1311.4e-085.2e-08
genusClostridiales_noname0.1311.43e-085.27e-08
speciesEubacterium_limosum0.131.57e-085.74e-08
familyPorphyromonadaceae-0.131.8e-086.54e-08
genusLeuconostoc0.1292.01e-087.24e-08
genusMorganella0.1292.2e-087.81e-08
speciesMorganella_morganii0.1292.2e-087.81e-08
speciesClostridium_bartlettii0.1282.68e-089.44e-08
genusLactococcus0.1282.89e-081.01e-07
genusRuminococcaceae_noname0.1264.08e-081.41e-07
speciesRuminococcaceae_bacterium_D160.1264.08e-081.41e-07
genusPseudoflavonifractor0.1264.48e-081.52e-07
speciesPseudoflavonifractor_capillosus0.1264.48e-081.52e-07
speciesMegasphaera_micronuciformis0.1264.83e-081.63e-07
genusAnaerostipes0.1255.81e-081.94e-07
speciesFusobacterium_ulcerans0.1256.11e-082.03e-07
speciesEubacterium_sp_3_1_310.1246.77e-082.23e-07
speciesBifidobacterium_longum0.1247.97e-082.61e-07
familyClostridiales_Family_XI_Incertae_Sedis0.1248.23e-082.68e-07
speciesHaemophilus_paraphrohaemolyticus0.1221.11e-073.59e-07
familyLactobacillaceae0.1192.27e-077.29e-07
orderBifidobacteriales0.1183.23e-071.02e-06
familyBifidobacteriaceae0.1183.23e-071.02e-06
speciesHoldemania_filiformis0.1173.69e-071.16e-06
speciesRuminococcus_sp_5_1_39BFAA0.1164.53e-071.42e-06
genusLactobacillus0.1164.73e-071.47e-06
genusProteus0.1164.89e-071.51e-06
genusBifidobacterium0.1165.09e-071.56e-06
speciesHaemophilus_sputorum0.1165.33e-071.62e-06
speciesLactobacillus_salivarius0.1156.04e-071.83e-06
speciesAlistipes_putredinis-0.1156.24e-071.88e-06
genusParabacteroides-0.1156.51e-071.94e-06
familyMyoviridae0.1138.73e-072.59e-06
speciesStreptococcus_infantarius0.1139.82e-072.9e-06
familyBacteroidaceae-0.1121.15e-063.35e-06
genusBacteroides-0.1121.15e-063.35e-06
speciesErysipelotrichaceae_bacterium_3_1_530.1111.65e-064.78e-06
genusParvimonas0.111.9e-065.47e-06
speciesParvimonas_unclassified0.111.94e-065.55e-06
speciesGemella_morbillorum0.1092.22e-066.31e-06
speciesBacteroides_uniformis-0.1092.39e-066.75e-06
genusActinobacillus0.1092.43e-066.79e-06
speciesActinobacillus_unclassified0.1092.43e-066.79e-06
speciesBacteroides_ovatus-0.1082.98e-068.27e-06
speciesCoprococcus_eutactus-0.1073.43e-069.47e-06
speciesKlebsiella_unclassified0.1073.57e-069.8e-06
speciesStreptococcus_mutans0.1064.14e-061.13e-05
speciesBifidobacterium_catenulatum0.1064.59e-061.25e-05
genusButyrivibrio-0.1064.78e-061.29e-05
speciesRuminococcus_obeum0.1055.47e-061.47e-05
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1046.03e-061.61e-05
speciesCoprobacillus_sp_D60.1046.44e-061.71e-05
speciesLactococcus_lactis0.1037.45e-061.96e-05
speciesBacteroides_dorei-0.1038.13e-062.13e-05
speciesButyrivibrio_crossotus-0.1038.56e-062.23e-05
speciesPrevotella_buccae0.1029.53e-062.47e-05
genusButyricicoccus0.11.5e-053.85e-05
speciesButyricicoccus_pullicaecorum0.11.5e-053.85e-05
speciesLactobacillus_casei_paracasei0.0972.89e-057.37e-05
genusAdlercreutzia0.0962.94e-057.42e-05
speciesAdlercreutzia_equolifaciens0.0962.94e-057.42e-05
speciesRoseburia_hominis-0.0963.19e-058.01e-05
speciesClostridium_sp_KLE_17550.0963.52e-058.79e-05
familyLachnospiraceae0.0953.99e-059.88e-05
speciesLactobacillus_gasseri0.0954e-059.88e-05
speciesCollinsella_intestinalis0.0935.78e-050.000142
speciesCampylobacter_concisus0.0926.71e-050.000164
speciesStreptococcus_lutetiensis0.0926.89e-050.000168
genusParaprevotella-0.0927.41e-050.000179
speciesParaprevotella_xylaniphila-0.0918.13e-050.000196
phylumViruses_noname0.0918.86e-050.000211
classViruses_noname0.0918.86e-050.000211
speciesBacteroides_vulgatus-0.099.19e-050.000218
speciesLeuconostoc_lactis0.099.57e-050.000226
speciesParaprevotella_unclassified-0.0890.0001070.000251
speciesLactobacillus_plantarum0.0890.0001230.000287
speciesRuminococcus_champanellensis-0.0880.0001310.000304
genusFaecalibacterium-0.0880.0001320.000304
speciesFaecalibacterium_prausnitzii-0.0880.0001320.000304
speciesParabacteroides_merdae-0.0880.0001330.000305
phylumFirmicutes0.0880.0001370.000312
genusDorea0.0880.0001480.000336
genusParasutterella-0.0870.0001560.000351
speciesParasutterella_excrementihominis-0.0870.0001560.000351
speciesBifidobacterium_bifidum0.0870.0001750.000391
genusMegasphaera0.0850.000220.000487
familyBacteroidales_noname-0.0850.0002220.000487
genusBacteroidales_noname-0.0850.0002220.000487
speciesBacteroidales_bacterium_ph8-0.0850.0002220.000487
genusAcidaminococcus0.0850.0002280.000498
genusCoriobacteriaceae_noname0.0850.0002370.000516
speciesProteus_mirabilis0.0840.0002550.000552
speciesCoriobacteriaceae_bacterium_phI0.0840.0002730.000588
speciesStreptococcus_thermophilus0.0830.0003070.000659
genusSutterella-0.0820.000360.000769
speciesSutterella_wadsworthensis-0.0820.0003930.000836
genusCollinsella0.0820.0004140.000876
speciesCollinsella_tanakaei0.0790.000580.00122
genusCoprobacter-0.0790.0006360.00133
speciesCoprobacter_fastidiosus-0.0790.0006360.00133
genusCampylobacter0.0790.0006590.00137
speciesEubacterium_hallii0.0780.0007280.00151
genusLambdalikevirus0.0780.0007620.00157
speciesFusobacterium_varium0.0780.0007810.0016
speciesBacteroides_fragilis0.0770.000910.00186
speciesEubacterium_siraeum-0.0760.0009620.00196
classEpsilonproteobacteria0.0760.0009780.00197
orderCampylobacterales0.0760.0009780.00197
speciesLactobacillus_delbrueckii0.0760.0009880.00198
speciesAcidaminococcus_unclassified0.0760.001020.00204
familyCampylobacteraceae0.0760.001030.00205
speciesCoprococcus_sp_ART55_1-0.0760.001050.00208
genusRuminococcus0.0750.001160.00229
speciesStreptococcus_phage_Sfi210.0750.001180.00232
speciesBacteroides_caccae-0.0750.001240.00243
speciesClostridium_spiroforme0.0750.001260.00246
speciesVeillonella_parvula0.0730.001480.00287
speciesBacteroides_xylanisolvens-0.0730.001490.00288
speciesEubacterium_eligens-0.0730.001520.00293
speciesParaprevotella_clara-0.0730.001530.00294
speciesLactobacillus_vaginalis0.0720.001710.00327
speciesLachnospiraceae_bacterium_1_1_57FAA0.0720.001760.00335
speciesBacteroides_cellulosilyticus-0.0720.00190.0036
genusMyoviridae_noname0.0720.001910.00361
genusBarnesiella-0.0720.001950.00365
speciesBarnesiella_intestinihominis-0.0720.001950.00365
speciesAlistipes_indistinctus-0.070.002390.00446
speciesLactobacillus_fermentum0.070.002580.00479
speciesCoprobacillus_sp_29_10.0690.002670.00494
orderCaudovirales0.0680.003080.00568
speciesFusobacterium_mortiferum0.0680.003180.00584
speciesLactobacillus_rhamnosus0.0670.003760.00687
speciesLachnospiraceae_bacterium_5_1_63FAA0.0670.003770.00687
speciesBacteroides_pectinophilus-0.0670.003840.00697
speciesEnterobacteria_phage_HK5440.0660.004520.00817
speciesClostridium_leptum0.0650.005120.00922
genusVeillonella0.0640.005480.00983
speciesCollinsella_unclassified0.0640.005580.00998
genusPeptoniphilus0.0640.005610.00999
speciesBacteroides_sp_2_1_22-0.0640.005650.01
speciesBacteroides_nordii-0.0640.005770.0102
familyPrevotellaceae-0.0640.005880.0104
speciesMegamonas_unclassified0.0630.006360.0112
genusMegamonas0.0630.00650.0114
genusPhascolarctobacterium-0.0630.006830.0119
speciesPhascolarctobacterium_succinatutens-0.0630.006830.0119
genusButyricimonas-0.0620.007030.0121
speciesButyricimonas_synergistica-0.0620.007030.0121
genusClostridiaceae_noname0.0620.007090.0121
speciesClostridiaceae_bacterium_JC1180.0620.007090.0121
genusOxalobacter-0.0620.007510.0128
speciesOxalobacter_formigenes-0.0620.007510.0128
speciesDorea_formicigenerans0.0610.008050.0136
speciesCoprococcus_catus-0.0590.01030.0174
familyOxalobacteraceae-0.0590.01110.0186
speciesLactobacillus_crispatus0.0590.01130.0189
speciesRoseburia_inulinivorans-0.0580.01180.0197
speciesEubacterium_rectale-0.0580.01290.0214
speciesAnaerostipes_hadrus0.0570.01360.0225
speciesBifidobacterium_breve0.0570.01390.0229
speciesSubdoligranulum_unclassified-0.0570.01410.0232
speciesPropionibacterium_freudenreichii0.0570.01420.0233
speciesEubacterium_ventriosum-0.0560.01520.0248
familyStaphylococcaceae0.0560.01610.0262
speciesBifidobacterium_pseudocatenulatum0.0560.01630.0264
orderPseudomonadales0.0550.01760.0284
speciesHoldemania_sp_AP20.0540.01850.0298
familyVeillonellaceae0.0540.01970.0316
genusRoseburia-0.0530.02130.0341
speciesLactobacillus_mucosae0.0530.02150.0343
familyViruses_noname0.0530.02190.0347
genusViruses_noname0.0530.02190.0347
orderViruses_noname0.0530.0220.0347
genusPropionibacterium0.0520.02340.0368
speciesEggerthella_sp_1_3_56FAA0.0520.02360.037
speciesDesulfovibrio_piger-0.0520.02380.0372
speciesAcidaminococcus_fermentans0.0510.02610.0407
speciesPeptostreptococcus_anaerobius0.0510.02690.0418
speciesBilophila_wadsworthia0.0510.02850.0441
genusTunalikevirus0.050.02920.045
familyBurkholderiales_noname-0.050.02980.0458
speciesLachnospiraceae_bacterium_8_1_57FAA-0.050.030.046
speciesBacteroides_thetaiotaomicron-0.050.03120.0477
classClostridia0.050.03190.0484
orderClostridiales0.050.03190.0484
speciesPorphyromonas_uenonis0.0490.03320.0499
speciesRuminococcus_lactaris-0.0490.03320.0499
genusBurkholderiales_noname-0.0490.03330.0499
speciesBurkholderiales_bacterium_1_1_47-0.0490.03330.0499
speciesMitsuokella_multacida-0.0490.0340.0508
speciesOscillibacter_sp_KLE_1728-0.0490.03470.0517
genusSubdoligranulum-0.0480.03630.0539
speciesVeillonella_dispar0.0480.03710.0549
genusOlsenella0.0470.040.059
speciesVeillonella_unclassified0.0470.04290.0631
speciesBacteroides_barnesiae-0.0450.04970.0729
speciesLachnospiraceae_bacterium_2_1_46FAA0.0450.0530.0774
genusAcidaminococcaceae_unclassified0.0450.0540.0784
speciesAlistipes_onderdonkii-0.0450.0540.0784
speciesLactobacillus_oris0.0440.05610.0812
genusStaphylococcus0.0430.06070.0876
genusCatenibacterium-0.0430.06120.0878
speciesCatenibacterium_mitsuokai-0.0430.06120.0878
speciesClostridium_sp_L2_50-0.0430.06150.088
speciesEubacterium_cylindroides0.0430.06210.0886
speciesKlebsiella_phage_KP360.0430.06290.0894
speciesAlistipes_sp_AP110.0430.06320.0896
speciesMethanobrevibacter_smithii-0.0420.0710.1
speciesLactobacillus_ruminis-0.0410.07440.105
speciesLactobacillus_reuteri0.0410.07750.109
speciesClostridium_sp_ATCC_BAA_4420.0410.07750.109
speciesRuminococcus_callidus-0.0410.07920.111
speciesAlistipes_sp_HGB5-0.040.08270.115
speciesAnaerotruncus_unclassified-0.040.0850.118
speciesMegamonas_funiformis0.040.08660.119
classMethanobacteria-0.040.0870.119
orderMethanobacteriales-0.040.0870.119
familyMethanobacteriaceae-0.040.0870.119
speciesLactobacillus_amylovorus0.0390.09440.129
genusCoprococcus-0.0390.09490.129
speciesStreptococcus_pasteurianus0.0380.1030.14
phylumSynergistetes0.0370.1050.141
classSynergistia0.0370.1050.141
orderSynergistales0.0370.1050.141
familySynergistaceae0.0370.1050.141
speciesAcidaminococcus_intestini0.0370.1110.149
genusAnaerotruncus0.0360.1150.154
speciesMegamonas_hypermegale0.0360.1160.155
genusBilophila0.0360.1180.156
speciesCollinsella_aerofaciens0.0360.1180.156
genusMitsuokella-0.0360.120.159
speciesVeillonella_atypica0.0350.1250.165
speciesMitsuokella_unclassified-0.0350.1280.168
speciesPeptostreptococcaceae_noname_unclassified0.0350.130.17
classNegativicutes0.0350.1310.171
orderSelenomonadales0.0350.1310.171
genusMethanobrevibacter-0.0350.1320.171
speciesParabacteroides_sp_D13-0.0350.1320.171
speciesOscillibacter_unclassified0.0350.1350.175
speciesBilophila_unclassified0.0340.1360.175
genusPorphyromonas0.0340.1380.177
genusDialister0.0340.1390.178
speciesPrevotella_bivia0.0340.140.179
speciesMegamonas_rupellensis0.0340.1410.18
speciesBifidobacterium_animalis0.0340.1430.182
speciesOdoribacter_unclassified0.0340.1460.185
phylumEuryarchaeota-0.0330.1490.189
speciesBacteroides_fluxus-0.0330.1580.199
orderAeromonadales0.0320.1610.202
phylumVerrucomicrobia-0.0320.1630.202
classVerrucomicrobiae-0.0320.1630.202
orderVerrucomicrobiales-0.0320.1630.202
familyVerrucomicrobiaceae-0.0320.1630.202
genusAkkermansia-0.0320.1630.202
speciesAkkermansia_muciniphila-0.0320.1630.202
speciesHoldemania_unclassified0.0310.1750.216
speciesOlsenella_unclassified0.0310.1790.221
speciesBacteroides_sp_4_3_47FAA0.0310.1830.225
speciesBacteroides_faecis-0.0310.1860.228
speciesLactobacillus_acidophilus-0.030.1930.236
genusPyramidobacter0.030.1970.24
speciesPyramidobacter_piscolens0.030.1970.24
speciesDialister_invisus0.030.1990.241
genusMethanosphaera-0.0290.2060.249
speciesMethanosphaera_stadtmanae-0.0290.2060.249
speciesRoseburia_unclassified0.0280.2210.266
genusDesulfovibrio-0.0280.2260.271
speciesBacteroides_intestinalis-0.0270.2350.282
speciesBacteroides_finegoldii-0.0270.2360.282
speciesButyrivibrio_unclassified-0.0270.2440.291
speciesOdoribacter_laneus0.0260.2530.301
genusPrevotella-0.0260.260.308
genusSiphoviridae_noname0.0260.2620.31
speciesPorphyromonas_asaccharolytica0.0260.270.319
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0250.2790.328
speciesMegasphaera_unclassified0.0250.2850.335
speciesBacteroides_coprocola0.0250.2860.335
familySiphoviridae0.0240.2910.34
speciesEubacterium_biforme-0.0240.2920.34
speciesAlistipes_unclassified0.0240.3080.358
familyOscillospiraceae0.0230.330.382
genusOscillibacter0.0230.330.382
speciesBacteroides_stercoris-0.0220.3330.384
speciesParabacteroides_distasonis-0.0220.340.391
speciesDialister_succinatiphilus0.0220.3410.392
speciesBacteroides_salyersiae-0.0210.3530.404
speciesBifidobacterium_angulatum-0.0210.3550.406
speciesPrevotella_copri-0.0210.3590.409
genusSlackia0.0210.3680.419
speciesMegasphaera_elsdenii0.020.3770.428
speciesTuricibacter_sanguinis0.020.3830.434
speciesC2likevirus_unclassified-0.020.3910.442
familyPodoviridae0.0190.4010.451
speciesPrevotella_stercorea-0.0190.4010.451
genusC2likevirus-0.0190.4090.459
speciesLactococcus_phage_936_sensu_lato-0.0190.4210.471
familySuccinivibrionaceae-0.0180.430.48
genusSuccinatimonas-0.0180.4340.482
speciesSuccinatimonas_hippei-0.0180.4340.482
speciesBacteroides_massiliensis-0.0170.4530.502
speciesBacteroides_sp_1_1_6-0.0160.4870.535
classDeltaproteobacteria0.0160.4890.535
orderDesulfovibrionales0.0160.4890.535
familyDesulfovibrionaceae0.0160.4890.535
speciesBacteroides_plebeius0.0160.490.535
speciesRuminococcus_bromii0.0160.490.535
speciesLactococcus_phage_P6800.0160.4950.538
speciesParabacteroides_goldsteinii-0.0160.4950.538
speciesBacteroides_sp_3_1_19-0.0160.4960.538
speciesDorea_longicatena0.0150.5160.559
familyPropionibacteriaceae0.0150.5190.559
genusTuricibacter0.0150.5190.559
familyAcidaminococcaceae0.0140.5370.577
speciesBifidobacterium_adolescentis-0.0140.5590.6
speciesParabacteroides_johnsonii-0.0130.5710.611
orderPasteurellales0.0130.5820.62
familyPasteurellaceae0.0130.5820.62
speciesBacteroides_coprophilus-0.0120.5970.635
speciesHaemophilus_parainfluenzae0.0120.6090.646
speciesEubacterium_ramulus-0.0120.6110.647
speciesBacteroides_eggerthii0.0110.6280.663
genusHaemophilus0.0110.6390.673
speciesSutterella_parvirubra-0.0110.6460.679
speciesMethanobrevibacter_unclassified0.0110.6490.681
speciesBacteroides_clarus0.010.6640.695
speciesRuminococcus_sp_JC304-0.010.670.698
speciesParabacteroides_unclassified-0.010.670.698
speciesLactobacillus_sanfranciscensis0.0090.6860.713
speciesCoprococcus_comes0.0090.7130.74
speciesDesulfovibrio_desulfuricans-0.0080.7190.744
speciesTuricibacter_unclassified0.0080.720.744
speciesBacteroides_oleiciplenus-0.0080.7320.754
speciesSlackia_piriformis-0.0070.7650.785
speciesLachnospiraceae_bacterium_7_1_58FAA0.0070.7650.785
speciesParabacteroides_sp_20_3-0.0070.7710.789
speciesLactococcus_phage_bIL67-0.0050.8320.85
genusSutterellaceae_unclassified-0.0050.8460.862
speciesOscillibacter_sp_KLE_17450.0040.8470.862
genusEubacterium-0.0040.8740.887
familyEubacteriaceae-0.0030.8840.895
speciesRoseburia_intestinalis-0.0030.8980.908
speciesLactococcus_phage_jm20.0020.9260.934
familyRuminococcaceae0.0020.9320.938
speciesDorea_unclassified-0.0010.970.974
speciesBacteroides_salanitronis0.00.9860.988
speciesLactococcus_phage_phi70.00.9950.995
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.02078509548610.002833604251755.54411356449e-0725108.43159
Crohns diseaseSpain17660.02138474615480.00587508169670.0016749322872486716.1829
Type II diabetesDenmark752770.004125247354480.002935364127550.0765637871934866028.3869
Ulcerative colitisSpain78660.006523241066620.00587508169670.114957084554765425.2491
ObesityDenmark1691230.003362121951120.003270793185420.151904906947936730.8014
Colorectal cancerAustria64350.01058210901850.02046025194810.191387261244847028.6575
Type II diabetesSweden53920.006943186407280.00501802343850.222164805628780626.4341
Type II diabetesChina1831850.009418829725670.007068660025810.8496514987282744790.7069
Rheumatoid arthritisChina127980.01130830863590.009733025393690.9300476033462832694.4609
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382