MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-27 15:18:44 PST
Job id & description: 1724, ARG1
Query type: protein
Count queries & homologs: 1, 56
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|P05089|ARGI1_HUMAN2845072CompleteK01476COG0010FirmicutesPeptoniphilus93.4898.3339.34
sp|P05089|ARGI1_HUMAN2733943CompleteK01476COG0010unknownunknown93.1795.4236.09
sp|P05089|ARGI1_HUMAN2858158CompleteK01476COG0010unknownunknown87.8994.336.46
sp|P05089|ARGI1_HUMAN2735292CompleteK01476COG0010unknownunknown93.1795.4236.96
sp|P05089|ARGI1_HUMAN2833898CompleteK01476COG0010unknownunknown90.9996.6635.45
sp|P05089|ARGI1_HUMAN2813526CompleteK01476COG0010FirmicutesClostridium94.4199.3434.74
sp|P05089|ARGI1_HUMAN2729498Lack 5'-endK01476COG0010unknownunknown86.3490.8534.97
sp|P05089|ARGI1_HUMAN2857617CompleteK01476COG0010unknownunknown87.2795.336.46
sp|P05089|ARGI1_HUMAN2905858CompleteK01476COG0010unknownunknown86.0291.8635.13
sp|P05089|ARGI1_HUMAN2850518CompleteK01476COG0010unknownunknown86.6593.6236.04
sp|P05089|ARGI1_HUMAN2812252CompleteK01476COG0010FirmicutesClostridium85.491.3634.77
sp|P05089|ARGI1_HUMAN2886781CompleteK01476COG0010unknownunknown86.0291.5536.69
sp|P05089|ARGI1_HUMAN2745808CompleteK01476COG0010unknownunknown90.0696.0734.22
sp|P05089|ARGI1_HUMAN2858736CompleteK01476COG0010BacteroidetesParabacteroides85.492.2835.71
sp|P05089|ARGI1_HUMAN2858597CompleteK01476COG0010BacteroidetesParabacteroides85.492.2835.71
sp|P05089|ARGI1_HUMAN2902809CompleteK01476COG0010unknownunknown86.0291.8636.79
sp|P05089|ARGI1_HUMAN2654317CompleteK01476COG0010unknownunknown94.4194.5334.31
sp|P05089|ARGI1_HUMAN2859003CompleteK01476COG0010BacteroidetesParabacteroides85.492.2835.71
sp|P05089|ARGI1_HUMAN2818534CompleteK01476COG0010BacteroidetesParabacteroides85.491.6735.36
sp|P05089|ARGI1_HUMAN2898493CompleteK01476COG0010unknownunknown86.0291.8636.43
sp|P05089|ARGI1_HUMAN2849956CompleteK01476COG0010Bacteroidetesunknown90.9998.3232.89
sp|P05089|ARGI1_HUMAN2854893CompleteK01476COG0010Bacteroidetesunknown90.9998.3233.22
sp|P05089|ARGI1_HUMAN2846171CompleteK01476COG0010BacteroidetesBacteroides85.492.2833.93
sp|P05089|ARGI1_HUMAN2859871CompleteK01476COG0010Bacteroidetesunknown85.492.2835.0
sp|P05089|ARGI1_HUMAN2860766CompleteK01476COG0010BacteroidetesParabacteroides85.492.2834.29
sp|P05089|ARGI1_HUMAN2881263CompleteK01476COG0010unknownunknown86.3491.8934.88
sp|P05089|ARGI1_HUMAN2848788CompleteK01476COG0010Bacteroidetesunknown85.492.2834.41
sp|P05089|ARGI1_HUMAN2885244CompleteK01476COG0010unknownunknown86.0291.5535.21
sp|P05089|ARGI1_HUMAN3195838Lack 5'-endK01476COG0010unknownunknown84.4796.7533.33
sp|P05089|ARGI1_HUMAN2960971CompleteK01476COG0010unknownunknown86.0292.7831.65
sp|P05089|ARGI1_HUMAN3035182Lack both endsK01476COG1982;COG0010unknownunknown82.6187.534.2
sp|P05089|ARGI1_HUMAN1935180Lack 3'-endK01476COG0010unknownunknown86.0273.3234.77
sp|P05089|ARGI1_HUMAN2814809CompleteK01476COG0010unknownunknown86.9692.034.4
sp|P05089|ARGI1_HUMAN2969849Lack 3'-endK01476COG0010unknownunknown85.0992.4734.78
sp|P05089|ARGI1_HUMAN3123634Lack 5'-endK01476COG0010unknownunknown81.3793.2434.46
sp|P05089|ARGI1_HUMAN2052068Lack 5'-endK01476COG1982;COG0010FusobacteriaFusobacterium84.1671.3132.1
sp|P05089|ARGI1_HUMAN3256446CompleteK01476COG0010unknownunknown72.3683.5236.13
sp|P05089|ARGI1_HUMAN2856315CompleteK01476COG0010unknownunknown86.9694.331.4
sp|P05089|ARGI1_HUMAN2558796Lack 5'-endK01476COG1982;COG0010unknownunknown85.7182.0832.37
sp|P05089|ARGI1_HUMAN4056145Lack 3'-endK01476COG0010unknownunknown72.0599.1336.71
sp|P05089|ARGI1_HUMAN2804197CompleteK01476COG0010unknownunknown84.7890.0333.81
sp|P05089|ARGI1_HUMAN2839908CompleteK01476COG0010unknownunknown84.7890.6433.94
sp|P05089|ARGI1_HUMAN2864577CompleteK01476COG0010unknownunknown85.0991.5834.75
sp|P05089|ARGI1_HUMAN2970611CompleteK01476COG0010unknownunknown83.8589.6932.47
sp|P05089|ARGI1_HUMAN2844593CompleteK01476COG0010unknownunknown84.1689.6332.97
sp|P05089|ARGI1_HUMAN3129833CompleteK01476COG0010FirmicutesCoprococcus70.8180.0733.48
sp|P05089|ARGI1_HUMAN2568280CompleteK01476COG0010unknownunknown84.7885.4931.93
sp|P05089|ARGI1_HUMAN2933949CompleteK01476COG0010unknownunknown86.0292.1531.01
sp|P05089|ARGI1_HUMAN3387987CompleteK01476COG0010unknownunknown80.7589.8131.15
sp|P05089|ARGI1_HUMAN3065500CompleteK01476COG0010unknownunknown79.1987.3731.82
sp|P05089|ARGI1_HUMAN2941261CompleteK01476COG0010unknownunknown86.6592.8131.38
sp|P05089|ARGI1_HUMAN3102989CompleteK01476COG0010unknownunknown86.6595.0430.66
sp|P05089|ARGI1_HUMAN3104903CompleteK01476COG0010unknownunknown89.4496.8130.38
sp|P05089|ARGI1_HUMAN3104311CompleteK01476COG0010unknownunknown88.296.4530.14
sp|P05089|ARGI1_HUMAN3111820Lack 5'-endK01476COG0010unknownunknown87.2792.9130.42
sp|P05089|ARGI1_HUMAN3042559CompleteK01476COG0010unknownunknown70.1976.2230.84
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusParabacteroides0.750.00.0
familyPorphyromonadaceae0.6395.24e-2151.24e-212
speciesParabacteroides_merdae0.4221.78e-812.8e-79
familyBacteroidaceae0.3671.04e-609.82e-59
genusBacteroides0.3671.04e-609.82e-59
familyClostridiales_noname0.3482.1e-541.65e-52
genusFlavonifractor0.3413.98e-522.35e-50
speciesFlavonifractor_plautii0.3413.98e-522.35e-50
speciesParabacteroides_distasonis0.3291.95e-481.02e-46
familyOscillospiraceae0.3161.35e-445.79e-43
genusOscillibacter0.3161.35e-445.79e-43
phylumBacteroidetes0.3122.12e-437.15e-42
classBacteroidia0.3122.12e-437.15e-42
orderBacteroidales0.3122.12e-437.15e-42
speciesOscillibacter_unclassified0.3042.22e-416.99e-40
phylumFirmicutes-0.2932.16e-386.37e-37
speciesClostridium_bolteae0.2692.57e-327.14e-31
speciesClostridiales_bacterium_1_7_47FAA0.2545.94e-291.56e-27
speciesClostridium_hathewayi0.2521.41e-283.5e-27
speciesBacteroides_uniformis0.2471.8e-274.25e-26
speciesClostridium_asparagiforme0.2472.46e-275.53e-26
speciesLachnospiraceae_bacterium_7_1_58FAA0.2422.17e-264.66e-25
genusBilophila0.2381.52e-253.12e-24
speciesBilophila_unclassified0.2382.11e-254.15e-24
speciesAnaerotruncus_colihominis0.2364.39e-258.29e-24
classDeltaproteobacteria0.2323.21e-245.41e-23
orderDesulfovibrionales0.2323.21e-245.41e-23
familyDesulfovibrionaceae0.2323.21e-245.41e-23
speciesClostridium_symbiosum0.2315.3e-248.63e-23
classClostridia-0.237.07e-241.08e-22
orderClostridiales-0.237.07e-241.08e-22
familyRikenellaceae0.2255.87e-238.4e-22
genusAlistipes0.2255.87e-238.4e-22
speciesBacteroides_thetaiotaomicron0.2256.66e-239.25e-22
speciesBacteroides_ovatus0.2213.72e-225.02e-21
speciesClostridium_citroniae0.2213.89e-225.1e-21
genusClostridiales_noname0.2215.01e-226.39e-21
classBacilli-0.2164.33e-215.38e-20
orderLactobacillales-0.2147.92e-219.59e-20
speciesStreptococcus_salivarius-0.2096.55e-207.73e-19
speciesBilophila_wadsworthia0.2045.31e-196.11e-18
familyRuminococcaceae-0.2011.49e-181.67e-17
genusFaecalibacterium-0.22.4e-182.57e-17
speciesFaecalibacterium_prausnitzii-0.22.4e-182.57e-17
familyStreptococcaceae-0.1933.14e-173.29e-16
genusStreptococcus-0.1925.75e-175.9e-16
speciesBacteroides_fragilis0.1926.23e-176.26e-16
orderBurkholderiales0.1841e-159.83e-15
classBetaproteobacteria0.1812.68e-152.56e-14
familyLachnospiraceae-0.1812.71e-152.56e-14
genusCoprococcus-0.1771.29e-141.19e-13
genusHaemophilus-0.1743.59e-143.12e-13
orderPasteurellales-0.1743.62e-143.12e-13
familyPasteurellaceae-0.1743.62e-143.12e-13
speciesHaemophilus_parainfluenzae-0.1743.64e-143.12e-13
speciesClostridium_clostridioforme0.1743.94e-143.32e-13
familyEubacteriaceae-0.1734.67e-143.87e-13
genusEubacterium-0.1734.85e-143.91e-13
familyClostridiaceae0.1734.89e-143.91e-13
genusVeillonella-0.1691.8e-131.42e-12
familySutterellaceae0.1682.36e-131.83e-12
genusClostridium0.1673.11e-132.37e-12
speciesSubdoligranulum_sp_4_3_54A2FAA0.1665.38e-134.03e-12
genusClostridiaceae_noname0.1657.64e-135.55e-12
speciesClostridiaceae_bacterium_JC1180.1657.64e-135.55e-12
speciesCoprococcus_catus-0.1648.81e-136.3e-12
genusDorea-0.1631.36e-129.58e-12
speciesVeillonella_unclassified-0.1631.45e-121.01e-11
speciesDorea_longicatena-0.1612.23e-121.53e-11
speciesBacteroides_vulgatus0.1586.11e-124.12e-11
speciesBacteroides_cellulosilyticus0.1578.63e-125.74e-11
speciesAlistipes_onderdonkii0.1579.55e-126.26e-11
speciesRuminococcus_obeum-0.1561.17e-117.56e-11
speciesErysipelotrichaceae_bacterium_2_2_44A0.1561.19e-117.59e-11
genusOdoribacter0.1551.57e-119.88e-11
speciesOdoribacter_splanchnicus0.1551.65e-111.02e-10
familyMicrococcaceae-0.1541.87e-111.15e-10
genusRothia-0.1541.96e-111.19e-10
speciesRothia_mucilaginosa-0.1532.68e-111.6e-10
speciesParabacteroides_unclassified0.1533.07e-111.81e-10
familyLactobacillaceae-0.1524.04e-112.35e-10
genusLactobacillus-0.1515.38e-113.1e-10
speciesEubacterium_biforme-0.1515.66e-113.22e-10
speciesStreptococcus_parasanguinis-0.1516.08e-113.42e-10
speciesPrevotella_copri-0.156.55e-113.64e-10
genusRuminococcaceae_noname0.1499.92e-115.33e-10
speciesRuminococcaceae_bacterium_D160.1499.92e-115.33e-10
speciesBacteroides_xylanisolvens0.1499.93e-115.33e-10
speciesErysipelotrichaceae_bacterium_6_1_450.1481.1e-105.83e-10
speciesVeillonella_parvula-0.1481.16e-106.08e-10
genusPrevotella-0.1471.5e-107.78e-10
speciesStreptococcus_vestibularis-0.1453.06e-101.57e-09
speciesDorea_formicigenerans-0.1443.7e-101.88e-09
speciesBacteroides_caccae0.1443.94e-101.98e-09
speciesOscillibacter_sp_KLE_17450.1444.12e-102.05e-09
speciesLachnospiraceae_bacterium_1_4_56FAA0.1434.74e-102.33e-09
speciesRuminococcus_gnavus0.1435.32e-102.59e-09
genusAnaerotruncus0.1435.95e-102.87e-09
speciesAnaerostipes_unclassified0.1426.81e-103.25e-09
familyPrevotellaceae-0.1372.62e-091.24e-08
speciesClostridium_sp_ATCC_BAA_4420.1372.84e-091.33e-08
speciesEubacterium_rectale-0.1372.94e-091.36e-08
speciesPrevotella_stercorea-0.1372.96e-091.36e-08
genusHoldemania0.1363.15e-091.43e-08
speciesVeillonella_atypica-0.1354.71e-092.12e-08
speciesDesulfovibrio_desulfuricans0.131.75e-087.79e-08
speciesEubacterium_sp_3_1_310.131.82e-088.03e-08
speciesAnaerostipes_hadrus-0.1292.22e-089.7e-08
speciesStreptococcus_sanguinis-0.1292.31e-081e-07
genusRoseburia-0.1282.62e-081.12e-07
speciesStreptococcus_australis-0.1273.57e-081.52e-07
speciesEubacterium_dolichum0.1273.89e-081.64e-07
orderActinomycetales-0.1264.33e-081.81e-07
speciesCoprococcus_sp_ART55_1-0.1264.37e-081.81e-07
speciesBacteroides_plebeius-0.1264.69e-081.92e-07
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1264.82e-081.96e-07
speciesRoseburia_inulinivorans-0.1264.92e-081.98e-07
speciesRuminococcus_callidus-0.1247.47e-082.99e-07
genusPseudoflavonifractor0.1231.03e-074.05e-07
speciesPseudoflavonifractor_capillosus0.1231.03e-074.05e-07
genusRuminococcus-0.1221.19e-074.64e-07
speciesBacteroides_stercoris0.1221.35e-075.22e-07
speciesFusobacterium_varium0.1211.61e-076.18e-07
speciesBacteroides_nordii0.121.74e-076.62e-07
speciesEubacterium_eligens-0.121.8e-076.8e-07
speciesAlistipes_shahii0.121.92e-077.19e-07
genusActinobacillus-0.1192.32e-078.56e-07
speciesActinobacillus_unclassified-0.1192.32e-078.56e-07
speciesStreptococcus_gordonii-0.1192.39e-078.74e-07
speciesCoprococcus_comes-0.1183.05e-071.11e-06
genusPeptostreptococcaceae_noname-0.1183.14e-071.13e-06
speciesMitsuokella_multacida-0.1183.46e-071.23e-06
speciesCoprococcus_eutactus-0.1183.47e-071.23e-06
speciesLachnospiraceae_bacterium_5_1_63FAA-0.1173.63e-071.28e-06
orderBacillales-0.1155.5e-071.92e-06
speciesBacteroides_dorei0.1155.56e-071.93e-06
speciesStreptococcus_mitis_oralis_pneumoniae-0.1156.55e-072.26e-06
familyBacillales_noname-0.1138.8e-072.99e-06
genusGemella-0.1138.8e-072.99e-06
speciesStreptococcus_anginosus-0.1139.03e-073.04e-06
speciesAlistipes_sp_AP110.1139.35e-073.13e-06
speciesRuminococcus_sp_5_1_39BFAA-0.1131.05e-063.49e-06
speciesStreptococcus_mutans-0.1121.12e-063.7e-06
speciesLactobacillus_fermentum-0.1111.54e-065.05e-06
speciesBlautia_producta0.111.77e-065.76e-06
speciesAlistipes_putredinis0.1082.86e-069.22e-06
speciesOscillibacter_sp_KLE_17280.1082.87e-069.22e-06
speciesErysipelotrichaceae_bacterium_21_30.1083.11e-069.92e-06
speciesRoseburia_hominis-0.1073.28e-061.04e-05
speciesBifidobacterium_dentium-0.1073.29e-061.04e-05
familyPeptostreptococcaceae-0.1073.6e-061.13e-05
speciesDorea_unclassified0.1064.33e-061.34e-05
speciesEubacterium_limosum0.1064.43e-061.37e-05
genusCoprobacillus0.1055.33e-061.63e-05
speciesCampylobacter_concisus-0.1037.67e-062.34e-05
speciesEubacterium_hallii-0.1038.31e-062.51e-05
genusCatenibacterium-0.1038.93e-062.67e-05
speciesCatenibacterium_mitsuokai-0.1038.93e-062.67e-05
speciesHoldemania_filiformis0.1011.1e-053.27e-05
speciesEnterobacter_cloacae-0.1011.2e-053.54e-05
genusEnterobacter-0.1011.25e-053.66e-05
familyVeillonellaceae-0.11.43e-054.17e-05
genusBifidobacterium-0.11.45e-054.2e-05
phylumActinobacteria-0.11.57e-054.49e-05
classActinobacteria-0.11.57e-054.49e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.0991.66e-054.72e-05
orderBifidobacteriales-0.0991.69e-054.75e-05
familyBifidobacteriaceae-0.0991.69e-054.75e-05
genusParasutterella0.0982.13e-055.91e-05
speciesParasutterella_excrementihominis0.0982.13e-055.91e-05
speciesVeillonella_dispar-0.0972.52e-056.96e-05
genusActinomyces-0.0972.77e-057.6e-05
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0962.96e-058.08e-05
speciesAcidaminococcus_unclassified0.0963.25e-058.82e-05
genusAcidaminococcaceae_unclassified0.0963.32e-058.95e-05
familyActinomycetaceae-0.0953.67e-059.84e-05
speciesEubacterium_ramulus-0.0953.75e-050.0001
speciesCoprobacillus_sp_29_10.0954.2e-050.000111
speciesLactobacillus_sanfranciscensis-0.0944.61e-050.000122
genusButyricimonas0.0944.76e-050.000124
speciesButyricimonas_synergistica0.0944.76e-050.000124
speciesClostridium_sp_L2_50-0.0944.87e-050.000126
speciesFusobacterium_ulcerans0.0944.92e-050.000127
speciesBacteroides_clarus0.0935.98e-050.000153
speciesEggerthella_unclassified0.090.0001010.000258
genusEggerthella0.0890.0001070.000272
speciesLactobacillus_rhamnosus-0.0890.0001080.000273
speciesKlebsiella_oxytoca-0.0860.00020.000502
speciesRuminococcus_bromii-0.0860.0002060.000514
speciesHoldemania_sp_AP20.0850.0002140.000532
speciesBifidobacterium_adolescentis-0.0850.0002190.000541
speciesOlsenella_unclassified-0.0850.0002320.00057
speciesWeissella_confusa-0.0850.0002360.000577
genusOlsenella-0.0850.0002390.000581
genusDesulfovibrio0.0850.0002420.000586
speciesLachnospiraceae_bacterium_6_1_63FAA0.0840.0002540.000612
speciesBlautia_hydrogenotrophica0.0840.0002660.000637
genusBurkholderiales_noname0.0840.0002820.000669
speciesBurkholderiales_bacterium_1_1_470.0840.0002820.000669
familyBurkholderiales_noname0.0840.0002940.000694
speciesLactobacillus_gasseri-0.0840.0002970.000697
speciesBacteroides_coprocola-0.0830.0003160.000738
speciesClostridium_sp_KLE_17550.0830.0003260.000758
speciesDialister_succinatiphilus-0.0830.0003310.000766
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0830.0003460.000797
speciesParabacteroides_goldsteinii0.0820.0003620.000825
speciesAlistipes_finegoldii0.0820.0003620.000825
speciesPeptostreptococcaceae_noname_unclassified-0.0820.0004080.000926
speciesHaemophilus_paraphrohaemolyticus-0.0810.0004220.000953
speciesClostridium_leptum0.0810.0004740.00107
speciesBacteroides_sp_2_1_220.0810.0004780.00107
speciesWeissella_cibaria-0.080.0005060.00112
speciesMethanobrevibacter_smithii-0.080.0005060.00112
genusAggregatibacter-0.0780.0006980.00153
speciesCoriobacteriaceae_bacterium_phI0.0780.0006980.00153
speciesLactobacillus_mucosae-0.0780.000730.0016
speciesRoseburia_intestinalis-0.0770.0008050.00175
speciesCollinsella_intestinalis0.0770.0008230.00178
speciesLachnospiraceae_bacterium_2_1_58FAA0.0770.0009210.00198
classNegativicutes-0.0760.0009490.00203
orderSelenomonadales-0.0760.0009490.00203
familyLeuconostocaceae-0.0760.0009850.00209
speciesMegasphaera_elsdenii-0.0760.001020.00216
speciesCollinsella_aerofaciens-0.0750.001180.00249
genusWeissella-0.0750.001190.00249
speciesFusobacterium_nucleatum-0.0750.001190.00249
genusCoriobacteriaceae_noname0.0750.001230.00256
genusPhascolarctobacterium-0.0740.001280.00264
speciesPhascolarctobacterium_succinatutens-0.0740.001280.00264
classGammaproteobacteria-0.0740.001460.003
classMethanobacteria-0.0730.001570.00318
orderMethanobacteriales-0.0730.001570.00318
familyMethanobacteriaceae-0.0730.001570.00318
phylumEuryarchaeota-0.0720.001810.00365
speciesClostridium_ramosum0.0710.0020.00402
speciesCollinsella_unclassified0.070.00240.0048
genusMethanobrevibacter-0.0690.00280.00558
speciesLactobacillus_ruminis-0.0690.002910.00577
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0690.002990.0059
speciesAlistipes_indistinctus0.0690.0030.0059
genusAnaerostipes-0.0680.003410.00668
speciesClostridium_bartlettii-0.0680.003450.00673
speciesCoprobacillus_sp_D60.0670.003550.0069
genusAdlercreutzia-0.0660.004050.00778
speciesAdlercreutzia_equolifaciens-0.0660.004050.00778
genusAcidaminococcus0.0660.004070.00778
speciesLactobacillus_salivarius-0.0660.004070.00778
genusC2likevirus0.0660.004230.00805
speciesCoprobacillus_unclassified0.0660.004360.00826
genusPeptoniphilus0.0660.00440.00831
speciesRuminococcus_lactaris-0.0660.004540.00854
speciesLactobacillus_plantarum-0.0650.004780.00895
orderAeromonadales-0.0650.004980.00929
speciesC2likevirus_unclassified0.0640.005450.0101
genusSolobacterium-0.0640.005650.0104
speciesSolobacterium_moorei-0.0640.005650.0104
genusMethanosphaera-0.0640.005770.0106
speciesMethanosphaera_stadtmanae-0.0640.005770.0106
speciesAggregatibacter_segnis-0.0630.006340.0116
speciesLactococcus_garvieae-0.0630.006560.0119
genusKlebsiella-0.0630.006570.0119
familyMyoviridae-0.0630.006710.0121
speciesClostridium_nexile0.0630.006720.0121
speciesParaprevotella_unclassified-0.0610.007850.014
genusParaprevotella-0.0610.008840.0157
speciesPorphyromonas_asaccharolytica0.060.009750.0173
speciesPropionibacterium_freudenreichii-0.060.009770.0173
speciesBacteroides_coprophilus-0.060.009950.0175
speciesEggerthella_lenta0.0590.01080.019
phylumProteobacteria0.0590.01090.0191
speciesBifidobacterium_pseudocatenulatum-0.0590.01110.0193
speciesKlebsiella_pneumoniae-0.0570.01290.0223
speciesParaprevotella_clara-0.0570.01290.0223
speciesPrevotella_buccae-0.0570.01320.0227
speciesRoseburia_unclassified0.0570.01330.0228
speciesEnterobacter_aerogenes-0.0570.01380.0236
speciesMegamonas_unclassified-0.0550.01680.0286
speciesLachnospiraceae_bacterium_2_1_46FAA0.0550.0170.0289
genusTunalikevirus-0.0550.01780.03
genusMegamonas-0.0550.01780.03
genusButyrivibrio-0.0550.01820.0306
speciesBifidobacterium_longum-0.0550.01840.0308
speciesLactococcus_phage_bIL670.0540.01990.0332
speciesButyrivibrio_crossotus-0.0540.020.0332
orderCoriobacteriales-0.0530.02070.0342
familyCoriobacteriaceae-0.0530.02070.0342
speciesMegamonas_funiformis-0.0530.0230.0378
speciesAlistipes_sp_HGB50.0520.02380.039
speciesBacteroides_oleiciplenus0.0520.02430.0397
speciesLeuconostoc_lactis-0.0520.02520.041
speciesBacteroides_salyersiae0.0520.02530.041
genusBarnesiella0.050.03090.0498
speciesBarnesiella_intestinihominis0.050.03090.0498
familyBacteroidales_noname0.050.03140.0501
genusBacteroidales_noname0.050.03140.0501
speciesBacteroidales_bacterium_ph80.050.03140.0501
speciesMegasphaera_micronuciformis-0.0490.03240.0515
speciesStreptococcus_thermophilus-0.0490.03290.0521
speciesCollinsella_tanakaei0.0490.03490.0551
speciesCitrobacter_unclassified-0.0490.03570.0562
genusPorphyromonas0.0480.03730.0585
genusEnterococcus-0.0480.03940.0616
genusPropionibacterium-0.0470.040.0621
speciesMegamonas_hypermegale-0.0480.040.0621
genusSutterellaceae_unclassified0.0470.04230.0655
speciesEubacterium_siraeum-0.0470.0430.0662
familyEnterococcaceae-0.0470.04320.0662
speciesKlebsiella_phage_KP36-0.0470.04320.0662
genusCollinsella-0.0470.04390.0671
speciesLactobacillus_oris-0.0460.04440.0676
genusCitrobacter-0.0460.04670.0709
speciesBifidobacterium_animalis-0.0450.04940.0747
speciesLachnospiraceae_bacterium_3_1_46FAA0.0450.05010.0756
speciesEggerthella_sp_1_3_56FAA-0.0450.05370.0807
phylumFusobacteria0.0440.05440.081
classFusobacteriia0.0440.05440.081
orderFusobacteriales0.0440.05440.081
genusButyricicoccus0.0440.0550.0813
speciesButyricicoccus_pullicaecorum0.0440.0550.0813
speciesHaemophilus_sputorum-0.0440.05510.0813
speciesLactococcus_phage_jm2-0.0440.05530.0813
familyFusobacteriaceae0.0440.05630.0825
speciesPrevotella_bivia0.0440.05680.083
familySiphoviridae0.0440.05820.0848
speciesErysipelotrichaceae_bacterium_3_1_530.0440.05870.0853
speciesAlistipes_unclassified0.0430.06090.0882
genusMorganella0.0420.0670.0964
speciesMorganella_morganii0.0420.0670.0964
speciesLactobacillus_reuteri-0.0420.06760.0967
speciesLactobacillus_casei_paracasei-0.0420.06760.0967
genusMitsuokella-0.0420.06960.0992
speciesGemella_morbillorum-0.0420.07060.1
genusFusobacterium0.0410.07280.103
genusErysipelotrichaceae_noname-0.0410.07290.103
speciesEnterococcus_faecium-0.0410.0760.107
genusLeuconostoc-0.0410.07850.11
speciesClostridium_perfringens-0.0410.07930.111
speciesTuricibacter_sanguinis-0.040.0830.116
speciesEubacterium_cylindroides0.040.0830.116
genusSutterella0.040.08450.117
speciesPeptostreptococcus_anaerobius0.040.08540.118
speciesOdoribacter_laneus0.040.08540.118
familyOxalobacteraceae0.0390.09040.124
speciesClostridium_spiroforme0.0390.09120.125
genusLactococcus-0.0390.09430.129
speciesEubacterium_ventriosum-0.0390.09590.131
familyPodoviridae0.0380.1040.141
speciesStreptococcus_pasteurianus0.0370.1050.142
speciesMethanobrevibacter_unclassified-0.0370.1080.146
orderCaudovirales0.0370.1120.151
speciesLactobacillus_vaginalis-0.0360.1180.159
genusTuricibacter-0.0360.1210.161
genusOxalobacter0.0360.1210.161
speciesOxalobacter_formigenes0.0360.1210.161
speciesDialister_invisus0.0360.1230.164
speciesMitsuokella_unclassified-0.0360.1240.164
speciesAnaerotruncus_unclassified0.0350.1330.176
speciesCitrobacter_freundii-0.0340.1380.182
classErysipelotrichia-0.0340.1390.182
orderErysipelotrichales-0.0340.1390.182
familyErysipelotrichaceae-0.0340.1390.182
speciesBacteroides_pectinophilus-0.0340.1420.185
speciesEnterococcus_faecalis-0.0340.1450.189
genusMyoviridae_noname-0.0340.1470.191
speciesParabacteroides_johnsonii0.0330.1490.193
speciesPorphyromonas_uenonis0.0330.1510.195
orderEnterobacteriales-0.0320.1610.206
familyEnterobacteriaceae-0.0320.1610.206
speciesStreptococcus_lutetiensis-0.0320.1640.209
speciesSutterella_wadsworthensis0.0320.1640.209
familySuccinivibrionaceae-0.0320.1680.214
speciesParaprevotella_xylaniphila-0.0320.170.216
speciesTuricibacter_unclassified-0.0310.1750.221
speciesRuminococcus_sp_JC304-0.0310.1760.222
genusSuccinatimonas-0.0310.1780.223
speciesSuccinatimonas_hippei-0.0310.1780.223
speciesSubdoligranulum_unclassified-0.0310.1790.224
speciesRuminococcus_champanellensis-0.0310.1820.227
classEpsilonproteobacteria-0.0310.1860.231
orderCampylobacterales-0.0310.1860.231
speciesMegamonas_rupellensis-0.030.1970.244
orderPseudomonadales-0.0280.2240.277
orderViruses_noname-0.0270.2380.293
speciesParvimonas_unclassified-0.0270.250.307
genusParvimonas-0.0270.2510.308
genusMegasphaera-0.0260.2520.308
speciesBifidobacterium_angulatum-0.0260.2630.321
speciesProteus_mirabilis0.0260.2640.321
speciesBacteroides_barnesiae-0.0250.2730.331
speciesBacteroides_sp_4_3_47FAA0.0250.280.338
speciesEscherichia_unclassified-0.0250.280.338
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0250.2870.346
genusCoprobacter0.0240.2920.35
speciesCoprobacter_fastidiosus0.0240.2920.35
phylumSynergistetes0.0240.2970.352
classSynergistia0.0240.2970.352
orderSynergistales0.0240.2970.352
familySynergistaceae0.0240.2970.352
familyCampylobacteraceae-0.0240.30.355
speciesKlebsiella_sp_MS_92_3-0.0240.3030.358
speciesBacteroides_salanitronis-0.0240.3070.361
speciesBacteroides_sp_1_1_60.0240.3080.362
genusCampylobacter-0.0230.3120.365
genusSiphoviridae_noname0.0230.3130.366
speciesStreptococcus_phage_Sfi210.0230.320.373
speciesRuminococcus_torques0.0230.3220.374
speciesPeptostreptococcus_stomatis-0.0220.3320.385
familyAcidaminococcaceae0.0220.3380.391
speciesBifidobacterium_catenulatum-0.0220.3410.394
genusProteus0.0220.3470.399
speciesStreptococcus_infantarius-0.0210.360.413
genusSubdoligranulum-0.020.3870.443
speciesSutterella_parvirubra0.020.3880.443
speciesLactobacillus_delbrueckii-0.0190.4110.469
familyViruses_noname-0.0190.4180.474
genusViruses_noname-0.0190.4180.474
phylumVerrucomicrobia0.0180.4290.48
classVerrucomicrobiae0.0180.4290.48
orderVerrucomicrobiales0.0180.4290.48
familyVerrucomicrobiaceae0.0180.4290.48
genusAkkermansia0.0180.4290.48
speciesAkkermansia_muciniphila0.0180.4290.48
speciesLactobacillus_crispatus-0.0180.430.48
speciesBacteroides_fluxus-0.0180.4440.494
speciesLactococcus_lactis-0.0180.4470.496
phylumViruses_noname0.0170.4640.513
classViruses_noname0.0170.4640.513
speciesLactococcus_phage_phi7-0.0170.4710.519
speciesParabacteroides_sp_D130.0150.510.561
speciesHoldemania_unclassified0.0150.5110.561
speciesDesulfovibrio_piger-0.0150.5130.562
speciesBacteroides_intestinalis0.0150.520.568
speciesBacteroides_massiliensis-0.0140.5310.579
speciesAcidaminococcus_fermentans-0.0130.5680.618
speciesLactococcus_phage_936_sensu_lato-0.0130.5840.634
speciesEscherichia_coli0.0120.5990.648
speciesEnterobacteria_phage_HK5440.0120.6120.661
genusBlautia0.0120.6140.662
speciesFusobacterium_mortiferum0.0110.6260.673
familyClostridiales_Family_XI_Incertae_Sedis-0.010.6630.711
speciesBifidobacterium_breve-0.010.6670.714
speciesButyrivibrio_unclassified-0.010.680.726
genusPyramidobacter0.0080.730.774
speciesPyramidobacter_piscolens0.0080.730.774
speciesOdoribacter_unclassified0.0080.730.774
speciesSlackia_piriformis0.0070.7550.799
genusSlackia0.0070.7570.799
speciesBacteroides_eggerthii-0.0070.760.801
speciesParabacteroides_sp_20_30.0070.7620.801
speciesBacteroides_sp_3_1_190.0070.7680.804
speciesBifidobacterium_bifidum0.0070.7680.804
speciesAlistipes_senegalensis0.0060.7990.834
genusLachnospiraceae_noname-0.0050.830.865
familyStaphylococcaceae-0.0040.8790.914
genusLambdalikevirus0.0030.8810.914
genusDialister-0.0030.8890.92
speciesLactobacillus_acidophilus0.0030.8990.929
speciesLactobacillus_amylovorus0.0030.9070.935
speciesKlebsiella_unclassified-0.0030.9090.935
familyPropionibacteriaceae0.0020.9270.95
genusStaphylococcus-0.0020.9290.95
speciesMegasphaera_unclassified0.0020.930.95
genusGordonibacter0.0020.9390.955
speciesGordonibacter_pamelaeae0.0020.9390.955
genusPeptostreptococcus-0.0020.9410.955
speciesBacteroides_finegoldii-0.0020.9480.96
speciesBacteroides_faecis0.0010.9580.967
speciesAcidaminococcus_intestini0.0010.9590.967
speciesLactococcus_phage_P6800.00.9950.998
genusPantoea0.00.9960.998
speciesPantoea_unclassified0.00.9960.998
genusEscherichia0.00.9990.999
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.02917238367790.01800787958041.11754584345e-053291.08728
Rheumatoid arthritisChina127980.0155807657930.01094020709560.003599311472824961.65405
Type II diabetesDenmark752770.02014688729820.0176295268030.0842442648676895729.3605
ObesityDenmark1691230.01884631273230.01592124248330.169097508059997332.7941
Type II diabetesSweden53920.01167181731530.01384344529010.3533010114021182740.0508
Liver cirrhosisChina1201140.0192712501950.01580319987320.5277842468482454582.4515
Colorectal cancerAustria64350.01346110089870.01276809514540.7837219987182477183.8104
Crohns diseaseSpain17660.01937629813390.01854224141660.8346434821682813293.5395
Ulcerative colitisSpain78660.01855126942580.01854224141660.9621018200522956497.5259
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382