MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-27 15:23:48 PST
Job id & description: 1725, ACHE
Query type: protein
Count queries & homologs: 1, 82
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|P22303|ACES_HUMAN946001CompleteK03927COG2272unknownunknown79.3290.7633.4
sp|P22303|ACES_HUMAN861795CompleteK03927COG2272unknownunknown80.9486.6333.99
sp|P22303|ACES_HUMAN869805CompleteK03927COG2272unknownunknown81.4388.3333.73
sp|P22303|ACES_HUMAN754465CompleteK03927COG2272unknownunknown82.986.6131.8
sp|P22303|ACES_HUMAN990060Lack 3'-endK03927COG2272unknownunknown82.7496.9430.31
sp|P22303|ACES_HUMAN898303CompleteK03927COG2272unknownunknown80.7892.1332.03
sp|P22303|ACES_HUMAN836735CompleteK03927COG2272unknownunknown85.1895.430.0
sp|P22303|ACES_HUMAN925268CompleteK03927COG2272ProteobacteriaKlebsiella86.8196.0232.97
sp|P22303|ACES_HUMAN830348CompleteK03927COG2272unknownunknown85.3492.9431.73
sp|P22303|ACES_HUMAN929763CompleteK03927COG2272ProteobacteriaKlebsiella82.7491.8233.59
sp|P22303|ACES_HUMAN813265CompleteK03927COG2272unknownunknown85.3491.6830.87
sp|P22303|ACES_HUMAN928484CompleteK03927COG2272ProteobacteriaKlebsiella86.8196.0232.41
sp|P22303|ACES_HUMAN725859Lack 5'-endK03927COG2272unknownunknown84.0490.7930.48
sp|P22303|ACES_HUMAN944348CompleteK03927COG2272unknownunknown82.2594.1832.3
sp|P22303|ACES_HUMAN790549Lack 5'-endK03927COG2272unknownunknown80.1386.3630.44
sp|P22303|ACES_HUMAN877017CompleteK03927COG2272BacteroidetesPrevotella81.7689.4730.49
sp|P22303|ACES_HUMAN875487CompleteK03927COG2272BacteroidetesPrevotella81.7689.4731.26
sp|P22303|ACES_HUMAN928486CompleteK03927COG2272ProteobacteriaEnterobacter86.8196.0232.05
sp|P22303|ACES_HUMAN870437CompleteK03927COG2272BacteroidetesPrevotella81.7689.331.08
sp|P22303|ACES_HUMAN834851CompleteK03927COG2272Firmicutesunknown85.9996.1831.8
sp|P22303|ACES_HUMAN839897Lack 5'-endK03927COG2272unknownunknown83.3991.7630.46
sp|P22303|ACES_HUMAN728315CompleteK03927COG2272unknownunknown81.687.8831.56
sp|P22303|ACES_HUMAN1032313CompleteK03927COG2272unknownunknown79.1593.7632.01
sp|P22303|ACES_HUMAN781683CompleteK03927COG2272unknownunknown80.7889.5732.16
sp|P22303|ACES_HUMAN755089CompleteK03927COG2272unknownunknown85.3493.3930.05
sp|P22303|ACES_HUMAN953626CompleteK03927COG2272unknownunknown81.1193.5530.57
sp|P22303|ACES_HUMAN807853CompleteK03927COG2272Firmicutesunknown84.8593.5831.38
sp|P22303|ACES_HUMAN810492CompleteK03927COG2272unknownunknown83.5586.9631.14
sp|P22303|ACES_HUMAN696887CompleteK03927COG2272unknownunknown85.8388.6330.28
sp|P22303|ACES_HUMAN758440CompleteK03927COG2272unknownunknown77.5285.4830.38
sp|P22303|ACES_HUMAN917378CompleteK03927COG2272unknownunknown78.9990.6730.16
sp|P22303|ACES_HUMAN782258CompleteK03927COG2272unknownunknown80.7889.5731.8
sp|P22303|ACES_HUMAN807817CompleteK03927COG2272unknownunknown82.985.6630.1
sp|P22303|ACES_HUMAN933439CompleteK03927COG2272ProteobacteriaKlebsiella86.4894.6131.63
sp|P22303|ACES_HUMAN866760CompleteK03927COG2272unknownunknown80.7892.6231.29
sp|P22303|ACES_HUMAN815018CompleteK03927COG2272unknownunknown83.7186.9330.19
sp|P22303|ACES_HUMAN645804CompleteK03927COG2272unknownunknown84.287.2431.27
sp|P22303|ACES_HUMAN896112CompleteK03927COG2272ProteobacteriaCitrobacter82.5791.1631.85
sp|P22303|ACES_HUMAN796633CompleteK03927COG2272unknownunknown75.2484.2430.35
sp|P22303|ACES_HUMAN732442CompleteK03927COG2272Bacteroidetesunknown77.6982.9731.19
sp|P22303|ACES_HUMAN921352CompleteK03927COG2272unknownunknown86.3299.430.11
sp|P22303|ACES_HUMAN932720CompleteK03927COG2272Proteobacteriaunknown86.8196.0132.06
sp|P22303|ACES_HUMAN827378CompleteK01044;K03927COG2272unknownunknown85.1892.3830.71
sp|P22303|ACES_HUMAN735284CompleteK03927COG2272unknownunknown81.2786.3930.74
sp|P22303|ACES_HUMAN763795CompleteK03927COG2272unknownunknown85.1889.3230.33
sp|P22303|ACES_HUMAN1157266Lack 5'-endK03927COG2272ProteobacteriaKlebsiella80.7897.1831.88
sp|P22303|ACES_HUMAN956555CompleteK03927COG2272unknownunknown84.6996.9830.56
sp|P22303|ACES_HUMAN835256CompleteK03927COG2272unknownunknown78.1886.0431.35
sp|P22303|ACES_HUMAN601618CompleteK03927COG2272BacteroidetesBacteroides78.6679.3330.65
sp|P22303|ACES_HUMAN933407CompleteK03927COG2272ProteobacteriaEnterobacter86.8196.0131.5
sp|P22303|ACES_HUMAN681180CompleteK03927COG2272unknownunknown78.6683.130.53
sp|P22303|ACES_HUMAN783044CompleteK03927COG2272unknownunknown80.6288.2730.0
sp|P22303|ACES_HUMAN933450CompleteK03927COG2272ProteobacteriaEnterobacter86.8196.0131.99
sp|P22303|ACES_HUMAN748263CompleteK03927COG2272unknownunknown75.2483.1830.39
sp|P22303|ACES_HUMAN788617CompleteK03927COG2272unknownunknown75.2484.1130.15
sp|P22303|ACES_HUMAN877562CompleteK03927COG2272unknownunknown77.0484.2131.22
sp|P22303|ACES_HUMAN822193CompleteK03927COG2272unknownunknown80.6283.8430.24
sp|P22303|ACES_HUMAN822825CompleteK03927COG2272unknownunknown81.684.9830.62
sp|P22303|ACES_HUMAN731520CompleteK03927COG2272Bacteroidetesunknown78.585.3331.76
sp|P22303|ACES_HUMAN598744CompleteK03927COG2272FirmicutesAcidaminococcus77.5278.6931.23
sp|P22303|ACES_HUMAN842763CompleteK03927COG2272unknownunknown80.4688.6831.52
sp|P22303|ACES_HUMAN805868CompleteK03927COG2272unknownunknown78.9987.3830.35
sp|P22303|ACES_HUMAN734614CompleteK03927COG2272BacteroidetesBacteroides77.282.430.04
sp|P22303|ACES_HUMAN753395CompleteK03927COG2272Firmicutesunknown78.0182.7830.38
sp|P22303|ACES_HUMAN586178CompleteK03927COG2272FirmicutesAcidaminococcus79.4880.1731.47
sp|P22303|ACES_HUMAN1038753Lack 5'-endK03927COG2272Bacteroidetesunknown75.0892.7130.19
sp|P22303|ACES_HUMAN932758CompleteK03927COG2272ProteobacteriaEnterobacter86.8196.0132.0
sp|P22303|ACES_HUMAN932732CompleteK03927COG2272ProteobacteriaEnterobacter77.6986.6332.99
sp|P22303|ACES_HUMAN761116CompleteK03927COG2272unknownunknown79.1586.1930.0
sp|P22303|ACES_HUMAN933556CompleteK03927COG2272ProteobacteriaEnterobacter73.9482.8333.33
sp|P22303|ACES_HUMAN863327CompleteK03927COG2272unknownunknown78.3486.6331.05
sp|P22303|ACES_HUMAN737962CompleteK03927COG2272unknownunknown78.585.0930.06
sp|P22303|ACES_HUMAN804762CompleteK03927COG2272unknownunknown78.3486.2530.06
sp|P22303|ACES_HUMAN615829CompleteK03927COG2272unknownunknown82.5778.1430.3
sp|P22303|ACES_HUMAN1015935CompleteK03927COG2272unknownunknown79.4891.7430.65
sp|P22303|ACES_HUMAN615887CompleteK03927COG2272unknownunknown79.1575.7630.75
sp|P22303|ACES_HUMAN839089CompleteK03927COG2272unknownunknown77.3684.6730.2
sp|P22303|ACES_HUMAN846924CompleteK03927COG2272unknownunknown82.4190.7730.06
sp|P22303|ACES_HUMAN660255CompleteK03927COG2272unknownunknown82.2583.8330.75
sp|P22303|ACES_HUMAN812870CompleteK03927COG2272Firmicutesunknown83.8890.1730.25
sp|P22303|ACES_HUMAN750195CompleteK03927COG2272unknownunknown77.5283.3630.13
sp|P22303|ACES_HUMAN829925Lack 5'-endK03927COG2272unknownunknown82.4188.9330.25
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesPrevotella_copri0.4271.2e-835.66e-81
familyPrevotellaceae0.426.94e-811.64e-78
genusPrevotella0.4115.63e-778.86e-75
genusBlautia-0.2595.48e-306.47e-28
phylumBacteroidetes0.2562.36e-291.59e-27
classBacteroidia0.2562.36e-291.59e-27
orderBacteroidales0.2562.36e-291.59e-27
genusCoprobacillus-0.2081.16e-196.84e-18
classClostridia-0.2011.55e-187.36e-17
orderClostridiales-0.2011.56e-187.36e-17
familyLachnospiraceae-0.22.73e-181.17e-16
speciesCoprobacillus_unclassified-0.1993.2e-181.26e-16
speciesRuminococcus_gnavus-0.1951.57e-175.7e-16
phylumFirmicutes-0.1942.42e-178.16e-16
genusLachnospiraceae_noname-0.1882.64e-168.31e-15
familySutterellaceae0.1813.59e-151.06e-13
genusEggerthella-0.1795.45e-151.51e-13
genusAnaerostipes-0.1761.61e-144.22e-13
speciesClostridium_ramosum-0.1752.96e-147.35e-13
orderBurkholderiales0.1719.22e-142.18e-12
speciesLachnospiraceae_bacterium_5_1_63FAA-0.1691.72e-133.87e-12
speciesEggerthella_unclassified-0.1691.97e-134.23e-12
classBetaproteobacteria0.1682.41e-134.95e-12
genusOdoribacter0.1682.81e-135.53e-12
speciesOdoribacter_splanchnicus0.1664.32e-138.16e-12
genusActinomyces-0.1612.38e-124.23e-11
speciesRuminococcus_torques-0.1612.42e-124.23e-11
familyActinomycetaceae-0.163.04e-125.12e-11
orderActinomycetales-0.1542.41e-113.92e-10
speciesParaprevotella_xylaniphila0.1524.24e-116.67e-10
speciesEubacterium_biforme0.1515.19e-117.9e-10
genusSolobacterium-0.156.82e-119.75e-10
speciesSolobacterium_moorei-0.156.82e-119.75e-10
classNegativicutes0.1434.61e-106.22e-09
orderSelenomonadales0.1434.61e-106.22e-09
genusSutterella0.1419.07e-101.19e-08
speciesSutterella_wadsworthensis0.1411e-091.28e-08
speciesParabacteroides_merdae0.141.3e-091.61e-08
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.1391.51e-091.83e-08
speciesParaprevotella_unclassified0.1355.07e-095.98e-08
genusParaprevotella0.1345.38e-096.19e-08
speciesBacteroides_coprocola0.1292.13e-082.36e-07
phylumActinobacteria-0.1292.2e-082.36e-07
classActinobacteria-0.1292.2e-082.36e-07
speciesRuminococcus_callidus0.1282.53e-082.65e-07
speciesErysipelotrichaceae_bacterium_2_2_44A-0.1273.78e-083.88e-07
familyBacillales_noname-0.1256.19e-086.09e-07
genusGemella-0.1256.19e-086.09e-07
speciesStreptococcus_sanguinis-0.1231.07e-071.03e-06
speciesAnaerostipes_hadrus-0.1221.12e-071.06e-06
genusCatenibacterium0.1221.18e-071.07e-06
speciesCatenibacterium_mitsuokai0.1221.18e-071.07e-06
speciesParaprevotella_clara0.1221.29e-071.15e-06
speciesErysipelotrichaceae_bacterium_6_1_45-0.1211.42e-071.24e-06
speciesBacteroides_uniformis0.1211.56e-071.34e-06
speciesStreptococcus_mitis_oralis_pneumoniae-0.1192.34e-071.97e-06
familyAcidaminococcaceae0.1182.92e-072.42e-06
familyClostridiaceae-0.1173.71e-073.02e-06
genusStreptococcus-0.1173.81e-073.02e-06
speciesClostridium_nexile-0.1173.84e-073.02e-06
speciesLachnospiraceae_bacterium_2_1_58FAA-0.1174.34e-073.36e-06
speciesAlistipes_putredinis0.1164.54e-073.46e-06
speciesErysipelotrichaceae_bacterium_21_3-0.1164.63e-073.47e-06
speciesLachnospiraceae_bacterium_1_4_56FAA-0.1165.46e-074.03e-06
familyPeptostreptococcaceae-0.1155.69e-074.13e-06
genusClostridium-0.1156.03e-074.29e-06
familyRuminococcaceae-0.1156.09e-074.29e-06
orderBifidobacteriales-0.1156.45e-074.36e-06
familyBifidobacteriaceae-0.1156.45e-074.36e-06
speciesBacteroides_finegoldii0.1156.47e-074.36e-06
familyStreptococcaceae-0.1147e-074.65e-06
speciesEggerthella_lenta-0.1131.02e-066.69e-06
speciesBacteroides_fragilis-0.1111.41e-069.12e-06
genusBifidobacterium-0.1111.54e-069.75e-06
speciesRuminococcus_sp_5_1_39BFAA-0.1111.55e-069.75e-06
speciesBifidobacterium_longum-0.111.92e-061.19e-05
genusRuminococcus-0.1092.07e-061.27e-05
speciesBacteroides_faecis0.1092.21e-061.34e-05
speciesBacteroides_plebeius0.1092.3e-061.37e-05
familyOscillospiraceae0.1082.6e-061.52e-05
genusOscillibacter0.1082.6e-061.52e-05
speciesAlistipes_indistinctus0.1082.88e-061.66e-05
genusPeptostreptococcus-0.1073.37e-061.92e-05
speciesClostridium_bolteae-0.1073.9e-062.19e-05
speciesFusobacterium_ulcerans-0.1054.97e-062.76e-05
speciesStreptococcus_thermophilus-0.1055.39e-062.96e-05
speciesOscillibacter_unclassified0.1047.14e-063.86e-05
orderBacillales-0.1047.19e-063.86e-05
speciesEubacterium_eligens0.1028.95e-064.75e-05
classBacilli-0.1011.1e-055.77e-05
speciesClostridium_clostridioforme-0.1011.15e-055.96e-05
orderLactobacillales-0.1011.21e-056.21e-05
familyPropionibacteriaceae-0.11.45e-057.36e-05
familyBacteroidaceae-0.0991.63e-058.1e-05
genusBacteroides-0.0991.63e-058.1e-05
speciesEubacterium_hallii-0.0991.65e-058.11e-05
genusPhascolarctobacterium0.0982.02e-059.68e-05
speciesPhascolarctobacterium_succinatutens0.0982.02e-059.68e-05
speciesBacteroides_coprophilus0.0982.03e-059.68e-05
speciesAnaerostipes_unclassified-0.0982.27e-050.000107
speciesRoseburia_inulinivorans0.0972.56e-050.00012
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0962.97e-050.000137
speciesMegamonas_hypermegale0.0963.21e-050.000147
genusPeptostreptococcaceae_noname-0.0954.01e-050.000179
familyBacteroidales_noname0.0954.06e-050.000179
genusBacteroidales_noname0.0954.06e-050.000179
speciesBacteroidales_bacterium_ph80.0954.06e-050.000179
speciesAlistipes_shahii0.0944.74e-050.000207
speciesGemella_morbillorum-0.0944.77e-050.000207
speciesMegamonas_funiformis0.0945.06e-050.000217
speciesAlistipes_senegalensis0.0935.75e-050.000244
genusPropionibacterium-0.0935.79e-050.000244
familyRikenellaceae0.0926.19e-050.000254
genusAlistipes0.0926.19e-050.000254
speciesClostridium_hathewayi-0.0926.19e-050.000254
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0927.06e-050.000287
speciesPrevotella_stercorea0.0918.21e-050.000331
genusSutterellaceae_unclassified0.099.13e-050.000365
speciesMegamonas_rupellensis0.0870.0001660.000658
genusGordonibacter-0.0850.0002310.000901
speciesGordonibacter_pamelaeae-0.0850.0002310.000901
speciesClostridium_symbiosum-0.0840.0002690.00104
speciesLactobacillus_casei_paracasei-0.0840.0002740.00105
speciesRuminococcus_obeum-0.0840.0002830.00108
speciesPropionibacterium_freudenreichii-0.0830.0003260.00123
speciesStreptococcus_parasanguinis-0.0830.0003540.00133
familyVeillonellaceae0.0820.0003650.00136
orderCoriobacteriales-0.0820.0003820.0014
familyCoriobacteriaceae-0.0820.0003820.0014
speciesDesulfovibrio_piger0.0810.0004750.00172
genusEnterococcus-0.0810.000490.00177
genusEscherichia-0.080.000570.00204
speciesMitsuokella_multacida0.0790.000580.00206
speciesClostridium_bartlettii-0.0790.0006050.00213
speciesStreptococcus_salivarius-0.0790.0006730.00235
familyEnterococcaceae-0.0780.0007180.00249
speciesEscherichia_coli-0.0770.0008150.00281
speciesStreptococcus_mutans-0.0770.0008420.00288
speciesRuminococcus_sp_JC304-0.0770.0008560.00291
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0760.0009390.00316
speciesRothia_mucilaginosa-0.0760.0009430.00316
speciesKlebsiella_pneumoniae0.0760.0009930.0033
speciesMegasphaera_unclassified0.0760.0009990.0033
speciesRoseburia_hominis0.0750.001140.00374
genusDesulfovibrio0.0750.001180.00384
speciesMegamonas_unclassified0.0750.001220.00394
genusBarnesiella0.0740.001370.00437
speciesBarnesiella_intestinihominis0.0740.001370.00437
genusMegamonas0.0740.001460.00462
speciesStreptococcus_vestibularis-0.0730.001470.00463
genusDorea-0.0730.001640.00513
speciesBlautia_producta-0.0720.001810.00562
speciesLactobacillus_rhamnosus-0.0720.001910.00589
speciesEnterococcus_faecium-0.0710.002230.00683
familyMicrococcaceae-0.070.00230.007
genusRothia-0.070.002350.00711
phylumFusobacteria-0.070.002530.00751
classFusobacteriia-0.070.002530.00751
orderFusobacteriales-0.070.002530.00751
speciesBifidobacterium_animalis-0.070.002590.00764
speciesEnterococcus_faecalis-0.0690.002840.00833
speciesBacteroides_thetaiotaomicron0.0680.003040.00886
speciesLactobacillus_ruminis0.0680.00310.00898
genusEnterobacter0.0680.003390.00976
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0680.003460.00989
familyFusobacteriaceae-0.0680.003480.00989
familyClostridiales_Family_XI_Incertae_Sedis-0.0670.003620.0102
speciesClostridium_sp_L2_500.0670.003820.0107
speciesStreptococcus_gordonii-0.0670.003840.0107
genusButyricimonas0.0670.003910.0108
speciesButyricimonas_synergistica0.0670.003910.0108
genusLeuconostoc-0.0670.004010.011
speciesPeptostreptococcus_stomatis-0.0660.004120.0112
genusRuminococcaceae_noname0.0660.004220.0114
speciesRuminococcaceae_bacterium_D160.0660.004220.0114
speciesFusobacterium_varium-0.0650.004710.0126
genusFusobacterium-0.0650.004830.0128
speciesBacteroides_eggerthii0.0650.004840.0128
speciesAcidaminococcus_unclassified0.0650.005020.0132
genusKlebsiella0.0640.005430.0142
familyPorphyromonadaceae0.0640.005670.0148
genusSiphoviridae_noname-0.0620.007230.0188
speciesBacteroides_caccae0.0620.00730.0188
speciesClostridium_spiroforme-0.0610.007830.0198
classDeltaproteobacteria0.0610.007850.0198
orderDesulfovibrionales0.0610.007850.0198
familyDesulfovibrionaceae0.0610.007850.0198
speciesDesulfovibrio_desulfuricans0.0610.008530.0214
speciesAlistipes_finegoldii0.0610.008770.0218
genusFaecalibacterium0.0610.008840.0218
speciesFaecalibacterium_prausnitzii0.0610.008840.0218
speciesEnterobacter_cloacae0.0610.008870.0218
genusAcidaminococcus0.0590.01090.0267
speciesErysipelotrichaceae_bacterium_3_1_53-0.0580.01140.0277
speciesLactococcus_lactis-0.0580.0120.029
speciesClostridiales_bacterium_1_7_47FAA-0.0580.01250.0301
speciesEubacterium_sp_3_1_31-0.0580.01280.0307
genusHaemophilus0.0570.01320.0315
familyLeuconostocaceae-0.0570.01330.0315
genusClostridiales_noname-0.0570.01350.0319
speciesLactobacillus_delbrueckii-0.0570.01440.0338
speciesEnterobacter_aerogenes0.0570.01450.0339
speciesHaemophilus_parainfluenzae0.0560.01480.0343
genusCoprobacter0.0560.01490.0343
speciesCoprobacter_fastidiosus0.0560.01490.0343
speciesCollinsella_tanakaei0.0560.01550.0355
speciesLactobacillus_fermentum-0.0560.01570.0358
speciesBacteroides_oleiciplenus0.0560.01610.0365
orderPasteurellales0.0550.01720.0387
familyPasteurellaceae0.0550.01720.0387
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0550.01750.039
speciesStreptococcus_australis-0.0550.01750.039
speciesFusobacterium_nucleatum-0.0530.0210.0465
genusLactococcus-0.0530.02130.047
speciesDialister_succinatiphilus0.0530.02190.0481
speciesMegasphaera_elsdenii0.0530.02240.0487
speciesBifidobacterium_pseudocatenulatum-0.0530.02240.0487
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speciesRuminococcus_bromii-0.0520.02380.0513
speciesCoprococcus_sp_ART55_10.0510.02650.0569
genusButyricicoccus-0.0510.02720.0578
speciesButyricicoccus_pullicaecorum-0.0510.02720.0578
speciesEscherichia_unclassified-0.0510.02750.0582
speciesStreptococcus_pasteurianus-0.050.02950.0622
orderCaudovirales-0.050.03080.0646
speciesEggerthella_sp_1_3_56FAA-0.0490.03480.0727
speciesAcidaminococcus_fermentans0.0480.03710.0771
genusMegasphaera0.0480.03740.0774
familyLactobacillaceae-0.0480.03780.0776
speciesBacteroides_xylanisolvens0.0480.03780.0776
genusLactobacillus-0.0480.03990.0815
speciesEubacterium_dolichum-0.0470.04040.0822
speciesBacteroides_salanitronis0.0470.04220.0855
speciesEnterobacteria_phage_HK544-0.0460.04450.0898
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0460.0450.0904
speciesParabacteroides_johnsonii0.0460.04540.0908
speciesBilophila_unclassified0.0460.04610.0918
phylumProteobacteria0.0460.04690.0928
speciesBacteroides_clarus0.0460.0470.0928
genusBilophila0.0450.05120.101
orderPseudomonadales-0.0450.05340.105
familySiphoviridae-0.0450.05390.105
speciesClostridium_sp_ATCC_BAA_442-0.0440.05670.11
genusAcidaminococcaceae_unclassified0.0440.05680.11
speciesParvimonas_unclassified-0.0440.05710.11
genusMorganella-0.0440.05770.11
genusParvimonas-0.0440.05770.11
speciesMorganella_morganii-0.0440.05770.11
genusSuccinatimonas0.0440.05870.111
speciesSuccinatimonas_hippei0.0440.05870.111
speciesPrevotella_buccae-0.0440.0590.111
speciesCoprobacillus_sp_D6-0.0440.05980.112
speciesLactococcus_phage_jm2-0.0430.06090.113
speciesOscillibacter_sp_KLE_17450.0430.06090.113
phylumViruses_noname-0.0420.06760.125
classViruses_noname-0.0420.06760.125
speciesStreptococcus_anginosus-0.0420.06970.128
familySuccinivibrionaceae0.0420.07010.128
phylumVerrucomicrobia-0.0410.07360.132
classVerrucomicrobiae-0.0410.07360.132
orderVerrucomicrobiales-0.0410.07360.132
familyVerrucomicrobiaceae-0.0410.07360.132
genusAkkermansia-0.0410.07360.132
speciesAkkermansia_muciniphila-0.0410.07360.132
speciesEubacterium_rectale0.0410.07390.132
speciesParabacteroides_goldsteinii0.0410.0750.133
speciesBacteroides_nordii0.0410.07660.135
speciesCollinsella_unclassified-0.0410.07670.135
speciesCoprobacillus_sp_29_1-0.0410.07670.135
speciesBifidobacterium_bifidum0.0410.07720.135
speciesBacteroides_intestinalis0.0410.07760.135
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0410.07840.136
speciesBacteroides_ovatus-0.0410.07880.136
speciesLactococcus_phage_P680-0.0410.07980.137
speciesStreptococcus_lutetiensis-0.040.08080.139
genusClostridiaceae_noname-0.040.0840.143
speciesClostridiaceae_bacterium_JC118-0.040.0840.143
speciesPeptostreptococcus_anaerobius-0.0390.09080.154
genusOxalobacter0.0390.0930.157
speciesOxalobacter_formigenes0.0390.0930.157
speciesMegasphaera_micronuciformis-0.0390.0940.158
speciesClostridium_leptum-0.0380.10.167
genusOlsenella-0.0380.1010.168
speciesEubacterium_ventriosum0.0380.1020.17
orderEnterobacteriales-0.0360.1150.19
familyEnterobacteriaceae-0.0360.1150.19
speciesDorea_formicigenerans-0.0360.1170.192
familyOxalobacteraceae0.0360.1190.195
speciesBlautia_hydrogenotrophica-0.0360.1240.203
genusPeptoniphilus-0.0340.1370.223
speciesBifidobacterium_catenulatum-0.0340.1390.225
speciesClostridium_citroniae0.0340.1430.231
speciesEubacterium_limosum-0.0340.1460.235
speciesBifidobacterium_dentium-0.0330.1480.237
speciesPeptostreptococcaceae_noname_unclassified-0.0330.1480.237
speciesLactobacillus_plantarum-0.0320.1630.26
speciesLachnospiraceae_bacterium_7_1_58FAA0.0320.170.27
speciesEubacterium_siraeum0.0320.1710.271
classErysipelotrichia-0.0310.1810.283
orderErysipelotrichales-0.0310.1810.283
familyErysipelotrichaceae-0.0310.1810.283
genusTuricibacter-0.0310.1810.283
speciesBifidobacterium_angulatum0.030.1960.305
speciesKlebsiella_oxytoca0.030.1980.307
familyViruses_noname-0.0290.2090.322
genusViruses_noname-0.0290.2090.322
genusCoriobacteriaceae_noname-0.0290.2130.327
genusStaphylococcus0.0290.2170.333
genusAdlercreutzia-0.0280.2220.336
speciesCoriobacteriaceae_bacterium_phI-0.0280.2220.336
speciesAdlercreutzia_equolifaciens-0.0280.2220.336
speciesAlistipes_sp_AP110.0280.2220.336
speciesTuricibacter_unclassified-0.0280.2270.342
familyStaphylococcaceae0.0270.2350.353
genusRoseburia0.0270.2390.358
speciesLactobacillus_acidophilus-0.0270.2410.36
speciesSlackia_piriformis0.0270.2430.362
speciesLeuconostoc_lactis-0.0270.250.37
speciesDialister_invisus-0.0270.250.37
familyMyoviridae-0.0260.2530.373
speciesClostridium_perfringens0.0260.2540.373
familyPodoviridae-0.0260.2550.373
speciesClostridium_sp_KLE_17550.0260.2550.373
speciesAlistipes_unclassified-0.0260.2590.377
speciesAcidaminococcus_intestini0.0260.260.378
speciesCollinsella_intestinalis-0.0260.2640.382
classGammaproteobacteria-0.0260.2650.383
speciesTuricibacter_sanguinis-0.0260.2690.387
familyClostridiales_noname-0.0250.2750.395
speciesParabacteroides_sp_D130.0250.2850.408
familyEubacteriaceae-0.0240.2920.416
speciesLactobacillus_crispatus-0.0240.2950.418
speciesHoldemania_filiformis0.0240.2950.418
genusEubacterium-0.0240.2960.418
genusC2likevirus-0.0240.2990.421
speciesHoldemania_sp_AP20.0240.3070.431
speciesAnaerotruncus_colihominis0.0240.3080.431
speciesCollinsella_aerofaciens0.0230.310.433
speciesC2likevirus_unclassified-0.0230.3140.437
genusAnaerotruncus0.0230.3150.437
orderAeromonadales0.0230.3190.442
speciesBacteroides_sp_2_1_220.0230.3250.449
speciesLactococcus_phage_bIL67-0.0230.3260.449
speciesBacteroides_vulgatus-0.0230.3270.449
speciesDorea_longicatena-0.0230.3310.453
speciesCitrobacter_freundii0.0220.3350.457
speciesLactococcus_phage_936_sensu_lato0.0220.3470.472
speciesParabacteroides_unclassified-0.0210.3660.496
speciesAggregatibacter_segnis0.0210.3730.504
speciesKlebsiella_sp_MS_92_30.020.3880.523
genusCitrobacter0.020.3930.527
speciesBilophila_wadsworthia0.020.3930.527
speciesBacteroides_sp_1_1_6-0.020.3980.532
genusPseudoflavonifractor0.0190.40.532
speciesPseudoflavonifractor_capillosus0.0190.40.532
speciesBacteroides_salyersiae0.0190.4170.553
speciesLachnospiraceae_bacterium_8_1_57FAA0.0180.4320.571
speciesRuminococcus_champanellensis-0.0170.4520.596
speciesCoprococcus_catus-0.0170.4530.596
speciesParabacteroides_distasonis0.0170.4550.597
speciesAnaerotruncus_unclassified0.0170.4610.603
speciesLactobacillus_sanfranciscensis-0.0170.470.613
speciesLactobacillus_salivarius-0.0160.4840.629
speciesBacteroides_barnesiae0.0150.5030.652
speciesLactobacillus_gasseri-0.0150.5040.652
genusHoldemania0.0150.5110.659
speciesLactococcus_phage_phi7-0.0150.5280.678
speciesMethanobrevibacter_smithii-0.0150.5290.678
speciesKlebsiella_unclassified-0.0150.5310.679
speciesVeillonella_dispar0.0140.5380.684
speciesDorea_unclassified-0.0140.5380.684
speciesCitrobacter_unclassified0.0140.5480.695
genusMyoviridae_noname-0.0140.5530.7
genusPyramidobacter0.0130.560.705
speciesPyramidobacter_piscolens0.0130.560.705
phylumEuryarchaeota-0.0130.5720.718
classEpsilonproteobacteria0.0130.5780.722
orderCampylobacterales0.0130.5780.722
speciesWeissella_confusa0.0130.5880.732
speciesBacteroides_cellulosilyticus-0.0120.590.732
speciesPrevotella_bivia-0.0120.5940.732
genusMethanobrevibacter-0.0120.5970.732
speciesBacteroides_sp_4_3_47FAA0.0120.5980.732
genusCoprococcus0.0120.5990.732
speciesAlistipes_sp_HGB50.0120.5990.732
genusBurkholderiales_noname-0.0120.60.732
speciesBurkholderiales_bacterium_1_1_47-0.0120.60.732
speciesBacteroides_sp_3_1_19-0.0120.6040.734
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0120.6050.734
speciesHoldemania_unclassified0.0120.6070.735
speciesBifidobacterium_adolescentis-0.0120.6120.739
familyBurkholderiales_noname-0.0110.6280.756
speciesBifidobacterium_breve0.0110.6330.758
speciesPorphyromonas_uenonis-0.0110.6350.758
genusParasutterella0.0110.6360.758
speciesParasutterella_excrementihominis0.0110.6360.758
speciesPorphyromonas_asaccharolytica-0.0110.6390.76
speciesCoprococcus_eutactus0.0110.6450.765
speciesBacteroides_stercoris0.0110.6470.765
speciesHaemophilus_paraphrohaemolyticus-0.010.6640.784
speciesOlsenella_unclassified-0.010.6680.786
genusFlavonifractor-0.010.6740.789
speciesFlavonifractor_plautii-0.010.6740.789
speciesRoseburia_intestinalis-0.0090.6850.8
genusWeissella-0.0090.7010.817
speciesMethanobrevibacter_unclassified0.0090.7090.82
phylumSynergistetes0.0090.7120.82
classSynergistia0.0090.7120.82
orderSynergistales0.0090.7120.82
familySynergistaceae0.0090.7120.82
genusErysipelotrichaceae_noname-0.0080.7140.82
speciesLactobacillus_mucosae-0.0080.7230.826
speciesEubacterium_cylindroides-0.0080.7230.826
speciesFusobacterium_mortiferum-0.0080.7250.827
classMethanobacteria-0.0080.7430.841
orderMethanobacteriales-0.0080.7430.841
familyMethanobacteriaceae-0.0080.7430.841
genusProteus0.0080.7450.841
speciesOdoribacter_unclassified-0.0070.7470.841
genusButyrivibrio0.0070.7480.841
speciesVeillonella_atypica0.0070.7530.844
genusCollinsella0.0070.7730.865
speciesRoseburia_unclassified-0.0070.7780.866
genusPantoea0.0060.7860.866
speciesLactobacillus_oris-0.0060.7860.866
speciesPantoea_unclassified0.0060.7860.866
speciesOscillibacter_sp_KLE_1728-0.0060.7860.866
speciesLactococcus_garvieae-0.0060.7870.866
speciesEubacterium_ramulus0.0060.7870.866
genusPorphyromonas-0.0060.7930.868
speciesMitsuokella_unclassified-0.0060.7930.868
genusAggregatibacter0.0060.8070.882
genusActinobacillus0.0060.8110.882
speciesActinobacillus_unclassified0.0060.8110.882
speciesButyrivibrio_crossotus0.0050.8160.885
genusVeillonella-0.0050.8290.897
speciesLactobacillus_vaginalis-0.0050.8320.899
speciesButyrivibrio_unclassified0.0050.8420.907
speciesCoprococcus_comes-0.0050.8460.91
speciesBacteroides_fluxus0.0040.8480.91
speciesSubdoligranulum_unclassified0.0040.8530.913
speciesKlebsiella_phage_KP360.0040.8560.914
speciesAlistipes_onderdonkii-0.0040.8630.919
speciesProteus_mirabilis-0.0040.8690.924
speciesLactobacillus_reuteri-0.0040.8780.931
speciesLactobacillus_amylovorus-0.0030.8820.933
genusDialister0.0030.8920.94
speciesOdoribacter_laneus-0.0030.8940.94
familyCampylobacteraceae-0.0030.8950.94
speciesStreptococcus_infantarius-0.0030.8980.94
speciesBacteroides_pectinophilus0.0030.8990.94
genusTunalikevirus-0.0030.90.94
genusSlackia-0.0030.9050.943
genusMitsuokella-0.0030.9070.943
genusMethanosphaera-0.0020.9170.949
speciesMethanosphaera_stadtmanae-0.0020.9170.949
genusSubdoligranulum-0.0020.920.95
genusCampylobacter-0.0020.9280.953
genusLambdalikevirus0.0020.9280.953
speciesCampylobacter_concisus-0.0020.9290.953
speciesSutterella_parvirubra-0.0020.9350.955
speciesBacteroides_massiliensis0.0020.9350.955
speciesVeillonella_unclassified0.0010.9510.969
speciesStreptococcus_phage_Sfi21-0.0010.9680.985
speciesHaemophilus_sputorum0.0010.9740.989
speciesClostridium_asparagiforme0.00.9840.997
speciesParabacteroides_sp_20_30.00.9860.997
speciesRuminococcus_lactaris0.00.9920.998
speciesBacteroides_dorei0.00.9930.998
speciesVeillonella_parvula0.00.9970.998
orderViruses_noname0.00.9980.998
speciesWeissella_cibaria0.00.9980.998
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesSweden53920.0633859113220.03445661505130.00143169443424610.20657
Type II diabetesDenmark752770.1043079959840.1003103946180.3997228612721819759.6486
Type II diabetesChina1831850.09601573178030.1398092338720.4530321052511998966.0597
Crohns diseaseSpain17660.08647967768220.09832106801010.5535838575342419780.4555
Rheumatoid arthritisChina127980.0871300551210.08762105518280.6833230260312191173.0683
Colorectal cancerAustria64350.06319647770010.0412790623870.7171256897382351179.5473
Liver cirrhosisChina1201140.1332700197530.1053554293580.8100296423582783593.5033
Ulcerative colitisSpain78660.100293347580.09832106801010.9062597763862829693.343
ObesityDenmark1691230.1104223214910.08557082874210.9914541346243025499.4837
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382