MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-27 15:49:12 PST
Job id & description: 1728, GANC
Query type: protein
Count queries & homologs: 1, 12
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|Q8TET4|GANC_HUMAN304349CompleteK01187COG1501unknownunknown71.1281.4234.96
sp|Q8TET4|GANC_HUMAN319652CompleteK01187COG1501unknownunknown72.184.0534.13
sp|Q8TET4|GANC_HUMAN299916CompleteK01187COG1501unknownunknown74.0784.431.2
sp|Q8TET4|GANC_HUMAN315074CompleteK01187COG1501unknownunknown70.0280.5333.28
sp|Q8TET4|GANC_HUMAN285503CompleteK01187COG1501FirmicutesEubacterium72.4380.4133.08
sp|Q8TET4|GANC_HUMAN308384CompleteK01187COG1501unknownunknown70.6882.0131.83
sp|Q8TET4|GANC_HUMAN358414CompleteK01187COG1501unknownunknown71.1284.2432.73
sp|Q8TET4|GANC_HUMAN261676CompleteK01187COG1501VerrucomicrobiaAkkermansia71.9979.3232.08
sp|Q8TET4|GANC_HUMAN380633CompleteK01187COG1501Bacteroidetesunknown72.4387.8933.53
sp|Q8TET4|GANC_HUMAN358703CompleteK01187COG1501BacteroidetesBacteroides71.1282.9832.42
sp|Q8TET4|GANC_HUMAN361706CompleteK01187COG1501unknownunknown71.0184.3432.74
sp|Q8TET4|GANC_HUMAN231745CompleteK01187COG1501unknownunknown73.7478.2930.04
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEubacterium_rectale0.6053.25e-1871.53e-184
genusEubacterium0.4671.03e-1012.22e-99
familyEubacteriaceae0.4661.41e-1012.22e-99
genusRoseburia0.2716.55e-337.73e-31
orderClostridiales0.2588.45e-306.66e-28
classClostridia0.2588.46e-306.66e-28
speciesRoseburia_inulinivorans0.2463.93e-272.65e-25
speciesRoseburia_intestinalis0.2399.29e-265.48e-24
speciesRuminococcus_sp_5_1_39BFAA0.2364.31e-252.26e-23
speciesPrevotella_copri-0.2314.48e-242.11e-22
genusPrevotella-0.2291.37e-235.88e-22
genusRuminococcus0.2282.19e-238.61e-22
phylumFirmicutes0.2131.36e-204.94e-19
speciesBacteroides_ovatus0.2088.41e-202.84e-18
familyPrevotellaceae-0.2011.7e-185.35e-17
genusFaecalibacterium0.22.54e-187.05e-17
speciesFaecalibacterium_prausnitzii0.22.54e-187.05e-17
speciesDorea_formicigenerans0.1961.2e-173.15e-16
speciesEubacterium_ramulus0.1841.05e-152.61e-14
speciesEubacterium_ventriosum0.1831.4e-153.3e-14
speciesEubacterium_hallii0.1771.29e-142.9e-13
speciesRuminococcus_bromii0.1771.42e-143.05e-13
genusDorea0.1761.77e-143.63e-13
genusCoprococcus0.1735.28e-141.04e-12
speciesCoprococcus_comes0.171.36e-132.57e-12
genusAdlercreutzia0.1594.18e-127.31e-11
speciesAdlercreutzia_equolifaciens0.1594.18e-127.31e-11
speciesDorea_longicatena0.1578.16e-121.38e-10
speciesLachnospiraceae_bacterium_5_1_63FAA0.1561.12e-111.82e-10
speciesAnaerostipes_hadrus0.1551.56e-112.45e-10
speciesParabacteroides_goldsteinii-0.1542.14e-113.26e-10
speciesCoprococcus_catus0.1532.67e-113.94e-10
familyRuminococcaceae0.1481.35e-101.93e-09
speciesRuminococcus_obeum0.1471.67e-102.32e-09
genusEscherichia-0.1426.12e-108.25e-09
speciesDialister_invisus0.1391.51e-091.98e-08
speciesEscherichia_coli-0.1391.76e-092.25e-08
speciesBifidobacterium_longum0.1382.04e-092.53e-08
genusDialister0.1382.36e-092.86e-08
orderEnterobacteriales-0.1363.58e-094.12e-08
familyEnterobacteriaceae-0.1363.58e-094.12e-08
genusBifidobacterium0.1363.93e-094.42e-08
speciesDesulfovibrio_piger-0.1354.08e-094.48e-08
familyFusobacteriaceae-0.1346.8e-097.29e-08
familyLachnospiraceae0.1337.51e-097.69e-08
orderBifidobacteriales0.1337.66e-097.69e-08
familyBifidobacteriaceae0.1337.66e-097.69e-08
genusFusobacterium-0.1338.05e-097.92e-08
phylumFusobacteria-0.1321.06e-089.81e-08
classFusobacteriia-0.1321.06e-089.81e-08
orderFusobacteriales-0.1321.06e-089.81e-08
speciesClostridium_ramosum-0.1273.37e-083.06e-07
speciesBifidobacterium_adolescentis0.1273.47e-083.09e-07
speciesDorea_unclassified-0.1264.81e-084.2e-07
speciesPrevotella_stercorea-0.1255.95e-085.11e-07
phylumProteobacteria-0.1247.79e-086.57e-07
classGammaproteobacteria-0.1239.53e-087.89e-07
classErysipelotrichia-0.1221.09e-078.57e-07
orderErysipelotrichales-0.1221.09e-078.57e-07
familyErysipelotrichaceae-0.1221.09e-078.57e-07
speciesPrevotella_buccae-0.1221.28e-079.9e-07
speciesBacteroides_uniformis0.1221.31e-079.97e-07
familyClostridiaceae-0.122.02e-071.51e-06
genusErysipelotrichaceae_noname-0.1192.58e-071.9e-06
genusCoprobacillus-0.1183.34e-072.43e-06
phylumActinobacteria0.1155.88e-074.14e-06
classActinobacteria0.1155.88e-074.14e-06
genusClostridium-0.1156.83e-074.74e-06
genusButyricimonas-0.1148.21e-075.54e-06
speciesButyricimonas_synergistica-0.1148.21e-075.54e-06
genusDesulfovibrio-0.1121.31e-068.71e-06
genusGordonibacter0.112e-061.29e-05
speciesGordonibacter_pamelaeae0.112e-061.29e-05
speciesClostridium_leptum0.1073.29e-062.1e-05
speciesStreptococcus_pasteurianus-0.1064.3e-062.71e-05
speciesClostridium_nexile-0.1054.9e-063.04e-05
genusPantoea-0.1055.54e-063.35e-05
speciesPantoea_unclassified-0.1055.54e-063.35e-05
speciesClostridium_hathewayi-0.1046.86e-064.1e-05
speciesBlautia_hydrogenotrophica0.1038.02e-064.73e-05
speciesBacteroides_plebeius-0.1038.4e-064.89e-05
classMethanobacteria-0.1029.23e-065.19e-05
orderMethanobacteriales-0.1029.23e-065.19e-05
familyMethanobacteriaceae-0.1029.23e-065.19e-05
speciesButyrivibrio_unclassified0.11.38e-057.66e-05
speciesBifidobacterium_bifidum0.0982.01e-050.00011
speciesBacteroides_salyersiae-0.0982.25e-050.000122
phylumBacteroidetes-0.0972.79e-050.000146
classBacteroidia-0.0972.79e-050.000146
orderBacteroidales-0.0972.79e-050.000146
orderCoriobacteriales0.0972.89e-050.000148
familyCoriobacteriaceae0.0972.89e-050.000148
genusMethanobrevibacter-0.0962.95e-050.00015
genusPeptostreptococcaceae_noname0.0963.11e-050.000156
speciesBacteroides_finegoldii-0.0963.14e-050.000156
phylumEuryarchaeota-0.0953.63e-050.000178
speciesRoseburia_hominis0.0944.5e-050.000219
genusAnaerostipes0.0944.82e-050.000232
speciesCoprobacillus_unclassified-0.0935.17e-050.000245
speciesLachnospiraceae_bacterium_3_1_46FAA0.0935.19e-050.000245
genusOxalobacter-0.0926.36e-050.000294
speciesOxalobacter_formigenes-0.0926.36e-050.000294
speciesParaprevotella_unclassified-0.0926.91e-050.000317
genusTuricibacter0.0927.35e-050.000334
familyOxalobacteraceae-0.099.01e-050.000405
speciesMethanobrevibacter_smithii-0.090.0001030.000459
speciesFusobacterium_mortiferum-0.0890.0001110.00049
genusParaprevotella-0.0890.0001140.000498
genusHoldemania0.0880.0001490.000645
speciesRuminococcus_torques0.0870.000160.000687
speciesAnaerostipes_unclassified-0.0870.0001720.000731
speciesTuricibacter_unclassified0.0870.000180.000759
speciesBacteroides_coprocola-0.0860.0001820.00076
genusClostridiales_noname-0.0860.0001840.000762
genusCatenibacterium-0.0860.0002080.000846
speciesCatenibacterium_mitsuokai-0.0860.0002080.000846
speciesKlebsiella_pneumoniae-0.0850.0002310.000932
speciesClostridium_bartlettii0.0850.0002540.00102
speciesBacteroides_stercoris-0.0820.0003850.00153
speciesAlistipes_indistinctus-0.0820.0004070.0016
familyOscillospiraceae0.0810.0004370.00169
genusOscillibacter0.0810.0004370.00169
speciesRuminococcus_callidus0.0810.0004440.0017
speciesRuminococcus_lactaris0.0810.0004850.00185
familyPeptostreptococcaceae0.080.0004950.00185
speciesLachnospiraceae_bacterium_1_1_57FAA0.080.0004950.00185
genusPhascolarctobacterium-0.080.0005340.00195
genusLachnospiraceae_noname0.080.0005340.00195
speciesPhascolarctobacterium_succinatutens-0.080.0005340.00195
genusParabacteroides-0.080.0005650.00204
speciesMethanobrevibacter_unclassified-0.080.0005650.00204
genusOlsenella-0.0790.0006040.00216
genusBurkholderiales_noname0.0790.0006460.00228
speciesBurkholderiales_bacterium_1_1_470.0790.0006460.00228
familyBurkholderiales_noname0.0790.0006590.00229
familyPorphyromonadaceae-0.0790.000660.00229
speciesParaprevotella_clara-0.0790.0006770.00233
speciesBacteroides_eggerthii-0.0780.0007550.00258
speciesOscillibacter_unclassified0.0780.0007740.00263
speciesClostridiales_bacterium_1_7_47FAA-0.0770.0008890.003
speciesEscherichia_unclassified-0.0760.001080.00362
speciesEubacterium_limosum-0.0740.001330.00439
speciesBifidobacterium_pseudocatenulatum0.0740.001330.00439
speciesCollinsella_aerofaciens0.0740.001380.00452
speciesBifidobacterium_catenulatum0.0740.001390.00452
speciesLactobacillus_sanfranciscensis0.0740.001460.00472
speciesMegamonas_unclassified-0.0730.001520.00485
speciesClostridium_bolteae-0.0730.001520.00485
speciesTuricibacter_sanguinis0.0730.001530.00485
speciesStreptococcus_salivarius0.0730.001540.00485
genusMegamonas-0.0730.001560.00488
speciesFusobacterium_nucleatum-0.0730.001570.00488
speciesOscillibacter_sp_KLE_17280.0720.001840.00568
speciesFusobacterium_varium-0.0720.001880.00576
genusParasutterella0.0720.001920.00581
speciesParasutterella_excrementihominis0.0720.001920.00581
speciesFusobacterium_ulcerans-0.070.002410.00725
familyBacteroidaceae0.070.002580.00766
genusBacteroides0.070.002580.00766
speciesCoprococcus_sp_ART55_10.070.002620.00773
speciesPeptostreptococcus_stomatis-0.0690.002720.00797
speciesMegasphaera_micronuciformis-0.0690.003010.00877
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0680.003280.0095
speciesStreptococcus_parasanguinis0.0670.003550.0102
genusKlebsiella-0.0670.003630.0104
speciesAlistipes_senegalensis-0.0670.00370.0105
speciesLactobacillus_salivarius-0.0660.004310.0122
speciesHoldemania_unclassified0.0660.004450.0125
speciesClostridium_symbiosum-0.0650.004780.0134
genusMethanosphaera-0.0650.005010.0138
speciesMethanosphaera_stadtmanae-0.0650.005010.0138
speciesStreptococcus_australis0.0630.006220.0171
speciesMegamonas_hypermegale-0.0630.006260.0171
speciesRuminococcus_champanellensis-0.0630.006580.0178
speciesParabacteroides_merdae-0.0620.006910.0186
speciesBacteroides_coprophilus-0.0620.006970.0187
speciesPeptostreptococcaceae_noname_unclassified0.0620.007140.019
speciesBacteroides_faecis-0.0620.007570.0201
speciesOlsenella_unclassified-0.0620.007790.0205
speciesOdoribacter_unclassified0.0610.008160.0214
genusCollinsella0.0610.008670.0226
speciesParaprevotella_xylaniphila-0.060.009780.0254
speciesLachnospiraceae_bacterium_1_4_56FAA0.0580.01170.0302
genusMegasphaera-0.0580.01210.031
speciesCoprobacillus_sp_29_1-0.0580.01230.0314
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0580.01280.0325
speciesHoldemania_filiformis0.0570.01290.0326
speciesLactobacillus_crispatus-0.0570.01320.0331
speciesEubacterium_biforme-0.0570.01370.0342
speciesLactobacillus_acidophilus0.0560.0150.0373
speciesCollinsella_tanakaei-0.0560.0160.0395
speciesBacteroides_intestinalis-0.0550.01680.0413
speciesLactobacillus_fermentum-0.0550.01710.0418
classDeltaproteobacteria-0.0550.01750.0421
orderDesulfovibrionales-0.0550.01750.0421
familyDesulfovibrionaceae-0.0550.01750.0421
classEpsilonproteobacteria-0.0550.01780.0424
orderCampylobacterales-0.0550.01780.0424
genusPeptostreptococcus-0.0540.01860.0441
genusSutterellaceae_unclassified-0.0540.01880.0444
speciesStreptococcus_infantarius-0.0530.02270.0533
speciesParabacteroides_distasonis-0.0520.02320.0542
speciesEnterococcus_faecalis-0.0520.02360.0549
familyVeillonellaceae0.0520.02420.056
speciesAlistipes_sp_AP110.0520.0250.0573
speciesAlistipes_onderdonkii0.0520.0250.0573
phylumVerrucomicrobia-0.0510.0260.0579
classVerrucomicrobiae-0.0510.0260.0579
orderVerrucomicrobiales-0.0510.0260.0579
familyVerrucomicrobiaceae-0.0510.0260.0579
genusAkkermansia-0.0510.0260.0579
speciesAkkermansia_muciniphila-0.0510.0260.0579
speciesBacteroides_sp_2_1_220.0510.02810.0622
speciesParabacteroides_johnsonii-0.0510.02820.0622
speciesMegamonas_rupellensis-0.050.02980.0654
speciesBacteroides_clarus-0.050.03060.0668
speciesLachnospiraceae_bacterium_2_1_46FAA-0.050.03070.0668
familyCampylobacteraceae-0.050.03110.0673
speciesLactobacillus_mucosae-0.050.03150.0679
speciesEggerthella_unclassified0.0490.03410.0732
speciesLachnospiraceae_bacterium_8_1_57FAA0.0480.0360.0769
genusEggerthella0.0480.03620.077
speciesSubdoligranulum_unclassified0.0480.03760.0796
speciesLactobacillus_oris-0.0480.03790.0799
genusCampylobacter-0.0480.03910.082
genusMorganella-0.0470.0410.0853
speciesMorganella_morganii-0.0470.0410.0853
speciesAcidaminococcus_fermentans-0.0470.04140.0857
familyAcidaminococcaceae-0.0470.04410.0909
speciesClostridium_clostridioforme-0.0460.04470.0917
speciesRoseburia_unclassified-0.0460.04530.0926
speciesBacteroides_oleiciplenus-0.0460.04630.0938
speciesButyrivibrio_crossotus-0.0460.04630.0938
orderViruses_noname0.0460.04680.0944
speciesLactobacillus_plantarum0.0450.05090.102
speciesClostridium_sp_KLE_1755-0.0450.05120.102
speciesStreptococcus_thermophilus0.0450.05210.104
genusSubdoligranulum0.0450.0540.107
genusAnaerotruncus-0.0440.05620.111
speciesAlistipes_putredinis0.0440.05680.112
familyBacteroidales_noname0.0440.0590.115
genusBacteroidales_noname0.0440.0590.115
speciesBacteroidales_bacterium_ph80.0440.0590.115
genusStreptococcus0.0430.06010.116
genusEnterococcus-0.0430.06170.119
speciesCitrobacter_freundii-0.0430.06250.12
speciesCampylobacter_concisus-0.0430.06430.123
genusProteus-0.0420.07020.134
familyStreptococcaceae0.0420.07060.134
speciesMegamonas_funiformis-0.0420.07090.134
speciesBacteroides_vulgatus0.0410.07540.142
familyMicrococcaceae-0.0410.07840.147
speciesLactobacillus_amylovorus-0.0410.07870.147
genusRothia-0.040.08190.152
genusMitsuokella0.040.08290.153
speciesHaemophilus_paraphrohaemolyticus-0.040.08310.153
speciesBifidobacterium_dentium-0.040.08360.154
familyEnterococcaceae-0.040.08420.154
speciesLeuconostoc_lactis0.040.08660.158
familyActinomycetaceae-0.0380.09780.178
genusPseudoflavonifractor0.0380.10.18
speciesPseudoflavonifractor_capillosus0.0380.10.18
genusActinomyces-0.0370.1060.19
familyClostridiales_Family_XI_Incertae_Sedis-0.0370.1070.191
speciesParabacteroides_unclassified-0.0370.110.196
speciesPorphyromonas_asaccharolytica0.0370.1110.197
speciesMitsuokella_unclassified0.0370.1120.198
speciesEubacterium_dolichum0.0360.1170.206
speciesKlebsiella_oxytoca0.0340.1380.242
speciesAlistipes_sp_HGB5-0.0340.1390.243
speciesCitrobacter_unclassified-0.0340.140.244
speciesClostridium_sp_ATCC_BAA_442-0.0340.1410.245
speciesRuminococcus_gnavus-0.0330.1520.263
genusSlackia-0.0330.1580.272
genusPeptoniphilus-0.0330.1590.272
speciesBifidobacterium_breve-0.0330.1590.272
speciesStreptococcus_anginosus-0.0320.1660.283
speciesAlistipes_shahii-0.0310.1750.297
genusMyoviridae_noname0.0310.1790.303
orderAeromonadales-0.0310.1820.304
genusCitrobacter-0.0310.1830.304
speciesBacteroides_nordii-0.0310.1830.304
speciesAggregatibacter_segnis-0.0310.1840.304
speciesBacteroides_thetaiotaomicron-0.0310.1840.304
phylumViruses_noname0.0310.1850.304
classViruses_noname0.0310.1850.304
speciesPeptostreptococcus_anaerobius-0.0310.1850.304
speciesEggerthella_lenta0.0310.1870.306
familyRikenellaceae0.030.1890.308
genusAlistipes0.030.1890.308
speciesBacteroides_sp_3_1_19-0.030.190.308
genusButyrivibrio0.030.1920.309
speciesBacteroides_fragilis0.030.1920.309
speciesRothia_mucilaginosa-0.030.1950.313
orderActinomycetales-0.030.1990.318
speciesClostridium_spiroforme-0.0290.2050.327
genusCoriobacteriaceae_noname0.0290.2080.331
orderPseudomonadales-0.0290.210.332
speciesBacteroides_massiliensis-0.0290.210.332
genusLeuconostoc0.0290.2120.334
familyMyoviridae0.0290.2130.334
genusFlavonifractor0.0290.2160.336
speciesFlavonifractor_plautii0.0290.2160.336
genusAggregatibacter-0.0290.2170.337
genusRuminococcaceae_noname0.0280.2190.338
speciesRuminococcaceae_bacterium_D160.0280.2190.338
speciesEubacterium_eligens0.0280.2210.34
speciesProteus_mirabilis-0.0280.2240.343
speciesBacteroides_dorei0.0280.2250.343
genusParvimonas-0.0280.2260.343
speciesAcidaminococcus_unclassified0.0280.2260.343
speciesParvimonas_unclassified-0.0280.2270.343
speciesBifidobacterium_angulatum0.0280.2290.345
speciesLactobacillus_rhamnosus-0.0280.2320.349
speciesVeillonella_parvula0.0270.2350.352
speciesWeissella_cibaria0.0270.2410.36
genusCoprobacter0.0270.2510.373
speciesCoprobacter_fastidiosus0.0270.2510.373
speciesLachnospiraceae_bacterium_6_1_63FAA0.0260.2530.374
speciesParabacteroides_sp_D13-0.0260.2590.382
speciesVeillonella_atypica0.0260.2610.383
familyLeuconostocaceae0.0260.2620.383
speciesCoriobacteriaceae_bacterium_phI0.0260.2620.383
genusC2likevirus0.0260.2690.392
speciesEnterobacter_aerogenes0.0250.2720.395
speciesLachnospiraceae_bacterium_7_1_58FAA0.0250.2730.395
familySuccinivibrionaceae-0.0250.2760.398
speciesClostridium_asparagiforme-0.0250.280.403
familySutterellaceae0.0250.2810.403
speciesBacteroides_sp_4_3_47FAA0.0240.290.415
speciesEnterococcus_faecium-0.0240.2950.419
speciesC2likevirus_unclassified0.0240.2950.419
familyStaphylococcaceae0.0240.3010.427
genusSuccinatimonas-0.0240.3030.427
speciesSuccinatimonas_hippei-0.0240.3030.427
speciesKlebsiella_sp_MS_92_30.0240.3050.427
speciesCollinsella_intestinalis-0.0240.3050.427
speciesPrevotella_bivia0.0230.3180.444
genusVeillonella0.0230.3190.444
speciesLactococcus_lactis0.0230.3220.447
speciesClostridium_perfringens-0.0230.3230.447
speciesBacteroides_sp_1_1_60.0220.3310.457
speciesStreptococcus_lutetiensis-0.0220.3360.462
speciesOscillibacter_sp_KLE_17450.0220.3370.462
speciesDesulfovibrio_desulfuricans-0.0220.3410.467
familyClostridiales_noname-0.0220.3510.479
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0210.3560.484
speciesHaemophilus_parainfluenzae0.0210.3590.487
speciesOdoribacter_splanchnicus-0.0210.3630.491
speciesErysipelotrichaceae_bacterium_21_3-0.0210.3670.495
genusWeissella0.0210.370.498
speciesHoldemania_sp_AP20.0210.3730.5
genusAcidaminococcaceae_unclassified0.0210.3750.501
speciesSutterella_wadsworthensis0.020.3760.501
speciesOdoribacter_laneus-0.020.3780.503
genusHaemophilus0.020.380.504
speciesAcidaminococcus_intestini0.020.3850.507
orderLactobacillales0.020.3860.507
speciesCoprococcus_eutactus0.020.3860.507
speciesMegasphaera_unclassified-0.020.3910.513
speciesSutterella_parvirubra-0.020.3930.514
familyViruses_noname-0.0190.40.52
genusViruses_noname-0.0190.40.52
genusPorphyromonas0.0190.4070.526
genusOdoribacter-0.0190.4070.526
orderCaudovirales0.0190.4080.526
orderBurkholderiales0.0190.4110.528
speciesBacteroides_caccae-0.0190.4120.528
classBacilli0.0190.4220.54
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.0180.4270.545
speciesBacteroides_pectinophilus-0.0180.4290.546
orderPasteurellales0.0180.4370.553
familyPasteurellaceae0.0180.4370.553
speciesLactobacillus_casei_paracasei-0.0180.4430.559
genusEnterobacter-0.0180.4450.559
genusLactococcus0.0180.4470.559
genusActinobacillus0.0180.4480.559
speciesActinobacillus_unclassified0.0180.4480.559
speciesBlautia_producta-0.0180.4490.559
speciesBacteroides_barnesiae-0.0170.4590.57
speciesStreptococcus_sanguinis0.0170.4610.571
speciesEubacterium_cylindroides0.0170.4710.582
speciesEnterobacter_cloacae-0.0160.4760.587
speciesDialister_succinatiphilus0.0160.4870.599
genusSutterella0.0160.4940.605
genusStaphylococcus0.0160.4950.605
classBetaproteobacteria0.0160.5020.612
speciesLactococcus_phage_phi70.0150.5040.613
genusSiphoviridae_noname0.0150.5160.626
speciesSlackia_piriformis-0.0150.5230.633
speciesLactobacillus_gasseri-0.0140.5310.636
phylumSynergistetes-0.0140.5320.636
classSynergistia-0.0140.5320.636
orderSynergistales-0.0140.5320.636
familySynergistaceae-0.0140.5320.636
speciesWeissella_confusa0.0140.5380.641
speciesLactobacillus_ruminis-0.0140.5460.646
genusClostridiaceae_noname-0.0140.5480.646
speciesClostridiaceae_bacterium_JC118-0.0140.5480.646
speciesPorphyromonas_uenonis-0.0140.5490.646
speciesLactococcus_phage_P6800.0140.5490.646
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0130.5630.661
familySiphoviridae0.0130.5680.665
speciesMitsuokella_multacida-0.0130.5710.667
speciesCollinsella_unclassified-0.0130.5790.673
speciesEnterobacteria_phage_HK544-0.0130.580.673
speciesEubacterium_sp_3_1_310.0130.580.673
speciesClostridium_citroniae0.0130.5820.673
speciesBilophila_unclassified-0.0130.5870.677
genusBilophila-0.0120.5980.688
speciesStreptococcus_gordonii-0.0120.6130.703
speciesVeillonella_dispar-0.0120.6140.703
speciesAlistipes_finegoldii-0.0120.6180.706
genusPropionibacterium-0.0110.620.707
familyPodoviridae0.0110.6260.712
genusBlautia0.0110.6310.716
speciesLachnospiraceae_bacterium_2_1_58FAA0.010.6690.757
speciesLachnospiraceae_bacterium_5_1_57FAA-0.010.6730.76
speciesBacteroides_fluxus-0.0090.6960.784
speciesLactococcus_phage_936_sensu_lato0.0090.7030.79
genusAcidaminococcus0.0090.7120.798
speciesKlebsiella_phage_KP36-0.0080.7290.813
speciesLactobacillus_reuteri-0.0080.7320.813
speciesStreptococcus_mitis_oralis_pneumoniae0.0080.7320.813
speciesMegasphaera_elsdenii-0.0080.7320.813
speciesLactobacillus_vaginalis-0.0080.7340.813
speciesCoprobacillus_sp_D6-0.0080.7420.819
speciesClostridium_sp_L2_50-0.0080.7430.819
speciesErysipelotrichaceae_bacterium_6_1_450.0080.7450.82
speciesEubacterium_siraeum0.0070.7490.822
speciesAlistipes_unclassified-0.0070.7540.826
speciesErysipelotrichaceae_bacterium_3_1_53-0.0070.7680.839
genusLactobacillus-0.0070.7730.843
speciesVeillonella_unclassified0.0060.7820.85
speciesBacteroides_salanitronis0.0060.7870.853
speciesKlebsiella_unclassified0.0060.7880.853
familyPropionibacteriaceae0.0060.7970.861
speciesEggerthella_sp_1_3_56FAA-0.0060.8050.867
genusTunalikevirus-0.0050.8160.877
speciesParabacteroides_sp_20_3-0.0050.8350.896
speciesAnaerotruncus_unclassified-0.0050.8440.903
speciesLactococcus_phage_jm20.0040.860.918
speciesGemella_morbillorum-0.0040.8650.922
classNegativicutes0.0040.870.923
orderSelenomonadales0.0040.870.923
speciesBacteroides_xylanisolvens0.0040.8750.926
genusSolobacterium0.0030.8970.945
speciesSolobacterium_moorei0.0030.8970.945
genusPyramidobacter-0.0030.9060.95
speciesPyramidobacter_piscolens-0.0030.9060.95
speciesLactobacillus_delbrueckii-0.0030.9090.951
orderBacillales0.0020.9140.954
genusBarnesiella0.0020.9260.962
speciesBarnesiella_intestinihominis0.0020.9260.962
familyBacillales_noname0.0020.9290.962
genusGemella0.0020.9290.962
speciesStreptococcus_vestibularis0.0020.9460.975
genusButyricicoccus0.0010.9490.975
speciesButyricicoccus_pullicaecorum0.0010.9490.975
speciesAnaerotruncus_colihominis0.0010.950.975
speciesBifidobacterium_animalis0.0010.9530.975
speciesPropionibacterium_freudenreichii-0.0010.9540.975
speciesLactococcus_phage_bIL670.0010.960.979
familyLactobacillaceae-0.0010.9670.984
speciesHaemophilus_sputorum0.0010.9690.984
speciesStreptococcus_mutans-0.0010.9730.986
speciesLactococcus_garvieae-0.0010.9780.988
speciesStreptococcus_phage_Sfi210.0010.980.988
speciesBilophila_wadsworthia0.00.9840.988
speciesBacteroides_cellulosilyticus0.00.9840.988
speciesRuminococcus_sp_JC3040.00.9910.993
genusLambdalikevirus0.00.9940.994
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.02447115922630.03297974867280.000161044182594554718.6335
Type II diabetesChina1831850.02426497003350.03315460481850.0016426316551419296.37496
ObesityDenmark1691230.04051603919480.03024765158250.0588609241761543017.8554
Colorectal cancerAustria64350.03255769410220.03590631739070.3358078184091343345.4493
Crohns diseaseSpain17660.04677820327980.03619281367150.6155773853492512883.5511
Ulcerative colitisSpain78660.03666597622120.03619281367150.6302608350862222673.3193
Type II diabetesSweden53920.05385370201650.0542903093090.6353630609481980767.0742
Type II diabetesDenmark752770.03760749173850.03643733870780.8312884518662726889.3828
Rheumatoid arthritisChina127980.05612732654260.05109206407820.8907505293132745991.5697
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382