MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-02-27 17:13:04 PST
Job id & description: 1740, GGT
Query type: protein
Count queries & homologs: 1, 59
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|P19440|GGT1_HUMAN643243CompleteK00681COG0405ProteobacteriaEnterobacter91.9290.3633.58
sp|P19440|GGT1_HUMAN642709CompleteK00681COG0405ProteobacteriaEnterobacter91.9290.3633.58
sp|P19440|GGT1_HUMAN616056CompleteK00681COG0405ProteobacteriaEnterobacter91.9288.9834.08
sp|P19440|GGT1_HUMAN642593CompleteK00681COG0405ProteobacteriaEnterobacter91.3990.0233.46
sp|P19440|GGT1_HUMAN643160CompleteK00681COG0405ProteobacteriaEnterobacter91.9290.3633.58
sp|P19440|GGT1_HUMAN642746CompleteK00681COG0405ProteobacteriaEnterobacter91.9290.3633.58
sp|P19440|GGT1_HUMAN640829CompleteK00681COG0405ProteobacteriaKlebsiella89.9888.4733.08
sp|P19440|GGT1_HUMAN672087CompleteK00681COG0405ProteobacteriaKlebsiella89.9890.0233.46
sp|P19440|GGT1_HUMAN644225CompleteK00681COG0405ProteobacteriaKlebsiella89.9888.6233.27
sp|P19440|GGT1_HUMAN642535CompleteK00681COG0405ProteobacteriaKlebsiella89.9888.4733.08
sp|P19440|GGT1_HUMAN580410CompleteK00681COG0405ProteobacteriaCitrobacter91.7486.932.65
sp|P19440|GGT1_HUMAN616077CompleteK00681COG0405ProteobacteriaEscherichia91.7488.8132.46
sp|P19440|GGT1_HUMAN624976CompleteK00681COG0405Proteobacteriaunknown82.2579.936.33
sp|P19440|GGT1_HUMAN643180CompleteK00681COG0405ProteobacteriaCitrobacter89.9888.4732.31
sp|P19440|GGT1_HUMAN643700CompleteK00681COG0405ProteobacteriaEscherichia91.7490.3432.27
sp|P19440|GGT1_HUMAN627843CompleteK00681COG0405ProteobacteriaEscherichia91.7489.4232.27
sp|P19440|GGT1_HUMAN580429CompleteK00681COG0405ProteobacteriaEscherichia91.7486.932.27
sp|P19440|GGT1_HUMAN634091CompleteK00681COG0405FusobacteriaFusobacterium91.5687.8433.09
sp|P19440|GGT1_HUMAN618480CompleteK00681COG0405FusobacteriaFusobacterium92.6288.1233.76
sp|P19440|GGT1_HUMAN633171CompleteK00681COG0405FusobacteriaFusobacterium91.5687.8433.58
sp|P19440|GGT1_HUMAN620846CompleteK00681COG0405FusobacteriaFusobacterium91.5687.2432.34
sp|P19440|GGT1_HUMAN615189CompleteK00681COG0405ProteobacteriaProteus84.0181.1933.26
sp|P19440|GGT1_HUMAN593171CompleteK00681COG0405FirmicutesAcidaminococcus92.9789.833.27
sp|P19440|GGT1_HUMAN500065CompleteK00681COG0405unknownunknown95.9687.632.47
sp|P19440|GGT1_HUMAN621385CompleteK00681COG0405ProteobacteriaProvidencia87.8785.233.72
sp|P19440|GGT1_HUMAN649010CompleteK00681COG0405FusobacteriaFusobacterium97.0195.8530.33
sp|P19440|GGT1_HUMAN685627CompleteK00681COG0405FusobacteriaFusobacterium85.5985.7132.67
sp|P19440|GGT1_HUMAN591307CompleteK00681COG0405FirmicutesAcidaminococcus91.7488.1332.96
sp|P19440|GGT1_HUMAN624056CompleteK00681COG0405unknownunknown82.2579.934.58
sp|P19440|GGT1_HUMAN554100CompleteK00681COG0405FirmicutesClostridium89.181.433.33
sp|P19440|GGT1_HUMAN699995Lack 5'-endK00681COG0405unknownunknown82.2583.6333.54
sp|P19440|GGT1_HUMAN510085CompleteK00681COG0405Firmicutesunknown96.6689.432.36
sp|P19440|GGT1_HUMAN648414CompleteK00681COG0405unknownunknown91.5688.631.84
sp|P19440|GGT1_HUMAN569303CompleteK00681COG0405FirmicutesClostridium91.5685.3430.41
sp|P19440|GGT1_HUMAN535097CompleteK00681COG0405FirmicutesClostridium92.9784.5430.88
sp|P19440|GGT1_HUMAN673100CompleteK00681COG0405unknownunknown89.9889.4931.88
sp|P19440|GGT1_HUMAN640920CompleteK00681COG0405unknownunknown88.2286.9231.08
sp|P19440|GGT1_HUMAN673745CompleteK00681COG0405unknownunknown89.4688.9731.87
sp|P19440|GGT1_HUMAN623105Lack 3'-endK00681COG0405unknownunknown82.4378.0630.82
sp|P19440|GGT1_HUMAN672596CompleteK00681COG0405unknownunknown89.4688.9731.55
sp|P19440|GGT1_HUMAN601013CompleteK00681COG0405unknownunknown95.0891.4330.7
sp|P19440|GGT1_HUMAN730260CompleteK00681COG0405unknownunknown88.7589.5130.1
sp|P19440|GGT1_HUMAN662710CompleteK00681COG0405unknownunknown92.0992.1630.85
sp|P19440|GGT1_HUMAN1096473Lack 5'-endK00681COG0405unknownunknown72.7688.5134.03
sp|P19440|GGT1_HUMAN1074499Lack 3'-endK00681COG0405unknownunknown78.7394.9532.04
sp|P19440|GGT1_HUMAN664019CompleteK00681COG0405unknownunknown81.981.7130.39
sp|P19440|GGT1_HUMAN657604CompleteK00681COG0405Firmicutesunknown88.2287.6730.38
sp|P19440|GGT1_HUMAN1219352Lack 3'-endK00681COG0405ProteobacteriaEscherichia70.8389.6232.37
sp|P19440|GGT1_HUMAN664699CompleteK00681COG0405unknownunknown86.8286.5930.0
sp|P19440|GGT1_HUMAN673242CompleteK00681COG0405unknownunknown92.0992.6430.51
sp|P19440|GGT1_HUMAN715299CompleteK00681COG0405unknownunknown87.790.6630.04
sp|P19440|GGT1_HUMAN612107CompleteK00681COG0405unknownunknown95.9690.1930.18
sp|P19440|GGT1_HUMAN760412Lack 3'-endK00681COG0405unknownunknown81.5584.430.67
sp|P19440|GGT1_HUMAN749138CompleteK00681COG0405unknownunknown81.7283.5530.53
sp|P19440|GGT1_HUMAN610859CompleteK00681COG0405unknownunknown95.9690.1930.2
sp|P19440|GGT1_HUMAN1232684Lack 3'-endK00681COG0405Firmicutesunknown73.9994.2430.79
sp|P19440|GGT1_HUMAN1027931Lack 3'-endK00681COG0405unknownunknown70.6581.5730.99
sp|P19440|GGT1_HUMAN1165210Lack 3'-endK00681COG0405FirmicutesPhascolarctobacterium74.3488.4831.81
sp|P19440|GGT1_HUMAN731119CompleteK00681COG0405ProteobacteriaDesulfovibrio79.6181.0130.17
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
orderEnterobacteriales0.7245.94e-3041.4e-301
familyEnterobacteriaceae0.7245.94e-3041.4e-301
classGammaproteobacteria0.7175.22e-2958.21e-293
phylumProteobacteria0.6992.18e-2742.57e-272
genusEscherichia0.6664.04e-2403.81e-238
speciesEscherichia_coli0.654.65e-2253.66e-223
genusKlebsiella0.4795.16e-1083.48e-106
speciesKlebsiella_pneumoniae0.4723.24e-1041.91e-102
genusPantoea0.4382.26e-881.07e-86
speciesPantoea_unclassified0.4382.26e-881.07e-86
speciesEscherichia_unclassified0.4058.62e-753.7e-73
familyFusobacteriaceae0.3352.35e-509.24e-49
genusFusobacterium0.3314.9e-491.78e-47
speciesEnterobacter_cloacae0.337.45e-492.51e-47
phylumFusobacteria0.3292.18e-486.05e-47
classFusobacteriia0.3292.18e-486.05e-47
orderFusobacteriales0.3292.18e-486.05e-47
genusEnterobacter0.3283.05e-488e-47
speciesClostridium_bolteae0.329.4e-462.34e-44
speciesRuminococcus_gnavus0.2971.94e-394.58e-38
genusCitrobacter0.2751.07e-332.4e-32
speciesClostridium_symbiosum0.2724.31e-339.25e-32
speciesClostridium_hathewayi0.2692.37e-324.86e-31
speciesClostridium_nexile0.2692.89e-325.68e-31
speciesSubdoligranulum_unclassified-0.2684.32e-328.16e-31
speciesCitrobacter_freundii0.2642.69e-314.88e-30
speciesCitrobacter_unclassified0.2636.9e-311.21e-29
genusSubdoligranulum-0.2629.26e-311.56e-29
speciesEubacterium_siraeum-0.2562.43e-293.96e-28
speciesClostridium_citroniae0.2455.95e-279.36e-26
speciesCoprobacillus_unclassified0.2431.64e-262.5e-25
speciesClostridiales_bacterium_1_7_47FAA0.2422.58e-263.81e-25
genusCoprococcus-0.245.7e-268.15e-25
genusCoprobacillus0.2399.45e-261.31e-24
speciesClostridium_leptum-0.2381.42e-251.91e-24
speciesFusobacterium_ulcerans0.2381.93e-252.53e-24
speciesMegasphaera_micronuciformis0.2341.14e-241.45e-23
familyRuminococcaceae-0.2331.69e-242.1e-23
genusFlavonifractor0.2299.36e-241.1e-22
speciesFlavonifractor_plautii0.2299.36e-241.1e-22
speciesVeillonella_parvula0.2291.2e-231.38e-22
genusVeillonella0.2222.21e-222.48e-21
speciesCoprococcus_catus-0.2222.66e-222.92e-21
familyClostridiaceae0.2213.27e-223.51e-21
speciesEubacterium_ramulus-0.2213.8e-223.99e-21
genusClostridium0.2191e-211.03e-20
speciesKlebsiella_oxytoca0.2181.57e-211.58e-20
speciesClostridium_ramosum0.2171.87e-211.84e-20
genusMegasphaera0.2155.88e-215.66e-20
speciesBacteroides_fragilis0.2122.15e-202.03e-19
speciesCoprococcus_comes-0.2112.64e-202.44e-19
speciesFusobacterium_nucleatum0.213.91e-203.55e-19
speciesDorea_longicatena-0.2095.46e-204.86e-19
classClostridia-0.2096.64e-205.7e-19
orderClostridiales-0.2096.64e-205.7e-19
speciesAnaerotruncus_unclassified-0.2089.62e-208.11e-19
speciesClostridium_perfringens0.2081.21e-191e-18
speciesFusobacterium_varium0.2071.39e-191.13e-18
speciesBifidobacterium_adolescentis-0.2062.08e-191.66e-18
phylumVerrucomicrobia-0.2038.72e-196.33e-18
classVerrucomicrobiae-0.2038.72e-196.33e-18
orderVerrucomicrobiales-0.2038.72e-196.33e-18
familyVerrucomicrobiaceae-0.2038.72e-196.33e-18
genusAkkermansia-0.2038.72e-196.33e-18
speciesAkkermansia_muciniphila-0.2038.72e-196.33e-18
genusDorea-0.1993.12e-182.23e-17
speciesWeissella_confusa0.1994.17e-182.94e-17
speciesVeillonella_dispar0.1994.41e-183.06e-17
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1985.85e-184e-17
speciesCollinsella_aerofaciens-0.1951.55e-171.05e-16
genusCollinsella-0.1951.59e-171.06e-16
genusWeissella0.1933.14e-172.06e-16
speciesVeillonella_atypica0.1933.44e-172.22e-16
speciesEubacterium_rectale-0.1933.67e-172.34e-16
speciesClostridium_clostridioforme0.1934.09e-172.57e-16
speciesVeillonella_unclassified0.1917.79e-174.84e-16
speciesKlebsiella_unclassified0.191.03e-166.31e-16
genusClostridiales_noname0.191.33e-168.05e-16
familyClostridiales_noname0.1891.6e-169.56e-16
speciesLactobacillus_salivarius0.1882.12e-161.25e-15
genusButyrivibrio-0.1882.79e-161.63e-15
speciesEubacterium_hallii-0.1857.89e-164.54e-15
speciesStreptococcus_thermophilus-0.1822.05e-151.17e-14
speciesFusobacterium_mortiferum0.1787.92e-154.45e-14
genusEubacterium-0.1788.92e-154.93e-14
familyEubacteriaceae-0.1788.98e-154.93e-14
speciesAnaerostipes_hadrus-0.1743.06e-141.66e-13
genusAdlercreutzia-0.1734.54e-142.41e-13
speciesAdlercreutzia_equolifaciens-0.1734.54e-142.41e-13
familyBacteroidales_noname-0.1719.39e-144.82e-13
genusBacteroidales_noname-0.1719.39e-144.82e-13
speciesBacteroidales_bacterium_ph8-0.1719.39e-144.82e-13
speciesMethanobrevibacter_smithii-0.1682.69e-131.37e-12
genusBarnesiella-0.1673.52e-131.75e-12
speciesBarnesiella_intestinihominis-0.1673.52e-131.75e-12
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1673.56e-131.75e-12
genusRuminococcus-0.1674.15e-132.02e-12
speciesDorea_formicigenerans-0.1665.04e-132.43e-12
speciesAnaerostipes_unclassified0.1656.71e-133.2e-12
speciesLactobacillus_mucosae0.1641.01e-124.77e-12
genusMethanobrevibacter-0.1631.39e-126.5e-12
classMethanobacteria-0.1612.58e-121.17e-11
orderMethanobacteriales-0.1612.58e-121.17e-11
familyMethanobacteriaceae-0.1612.58e-121.17e-11
speciesRuminococcus_sp_5_1_39BFAA-0.163.2e-121.44e-11
genusAcidaminococcus0.163.27e-121.46e-11
phylumFirmicutes-0.1594.89e-122.16e-11
genusEnterococcus0.1586.36e-122.78e-11
speciesEggerthella_unclassified0.1579.03e-123.91e-11
orderCoriobacteriales-0.1561.02e-114.34e-11
familyCoriobacteriaceae-0.1561.02e-114.34e-11
speciesAlistipes_shahii-0.1561.21e-115.1e-11
speciesLactococcus_garvieae0.1561.29e-115.39e-11
familyEnterococcaceae0.1551.64e-116.79e-11
speciesEnterobacter_aerogenes0.1542.04e-118.37e-11
speciesMegamonas_unclassified0.1542.21e-118.99e-11
phylumEuryarchaeota-0.1532.55e-111.03e-10
genusMegamonas0.1532.59e-111.04e-10
speciesRuminococcus_obeum-0.1523.83e-111.52e-10
speciesLachnospiraceae_bacterium_6_1_63FAA0.1515.6e-112.2e-10
speciesBacteroides_thetaiotaomicron0.1515.64e-112.2e-10
familyRikenellaceae-0.157.05e-112.69e-10
genusAlistipes-0.157.05e-112.69e-10
speciesStreptococcus_infantarius0.157.08e-112.69e-10
speciesEnterococcus_faecalis0.158.14e-113.07e-10
genusPseudoflavonifractor-0.1481.35e-105.01e-10
speciesPseudoflavonifractor_capillosus-0.1481.35e-105.01e-10
genusEggerthella0.1481.36e-105.01e-10
speciesCoprococcus_sp_ART55_1-0.1462.35e-108.6e-10
familyPropionibacteriaceae-0.1453.04e-101.1e-09
speciesClostridium_asparagiforme0.1453.12e-101.12e-09
speciesC2likevirus_unclassified-0.1444.51e-101.61e-09
speciesKlebsiella_sp_MS_92_30.1434.98e-101.77e-09
genusMorganella0.1418.91e-103.1e-09
speciesMorganella_morganii0.1418.91e-103.1e-09
speciesAlistipes_putredinis-0.1418.92e-103.1e-09
genusC2likevirus-0.1419.78e-103.37e-09
speciesWeissella_cibaria0.1419.98e-103.41e-09
speciesAlistipes_senegalensis-0.1391.65e-095.6e-09
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1381.95e-096.57e-09
phylumSynergistetes0.1382.23e-097.31e-09
classSynergistia0.1382.23e-097.31e-09
orderSynergistales0.1382.23e-097.31e-09
familySynergistaceae0.1382.23e-097.31e-09
genusProteus0.1373.09e-091.01e-08
genusBilophila0.1363.53e-091.14e-08
genusCoprobacter-0.1363.95e-091.26e-08
speciesCoprobacter_fastidiosus-0.1363.95e-091.26e-08
speciesBilophila_unclassified0.1354.53e-091.44e-08
speciesStreptococcus_anginosus0.1346.19e-091.95e-08
speciesBacteroides_plebeius0.1346.7e-092.09e-08
classDeltaproteobacteria0.1337.11e-092.18e-08
orderDesulfovibrionales0.1337.11e-092.18e-08
familyDesulfovibrionaceae0.1337.11e-092.18e-08
speciesAcidaminococcus_intestini0.1337.31e-092.23e-08
genusPyramidobacter0.1321.03e-083.1e-08
speciesPyramidobacter_piscolens0.1321.03e-083.1e-08
orderPasteurellales0.1311.4e-084.16e-08
familyPasteurellaceae0.1311.4e-084.16e-08
orderLactobacillales0.131.75e-085.13e-08
speciesPrevotella_buccae0.131.75e-085.13e-08
classBacilli0.131.77e-085.16e-08
speciesButyrivibrio_crossotus-0.1291.94e-085.62e-08
speciesBacteroides_stercoris0.1292.04e-085.87e-08
classNegativicutes0.1292.11e-086e-08
orderSelenomonadales0.1292.11e-086e-08
genusHaemophilus0.1292.2e-086.22e-08
speciesHaemophilus_parainfluenzae0.1292.37e-086.66e-08
speciesBifidobacterium_pseudocatenulatum0.1282.9e-088.1e-08
speciesBilophila_wadsworthia0.1283.03e-088.41e-08
genusAggregatibacter0.1283.1e-088.56e-08
genusCampylobacter0.1273.68e-081.01e-07
classEpsilonproteobacteria0.1273.89e-081.06e-07
orderCampylobacterales0.1273.89e-081.06e-07
speciesSutterella_wadsworthensis-0.1264.38e-081.18e-07
speciesLachnospiraceae_bacterium_2_1_46FAA0.1255.65e-081.52e-07
familyCampylobacteraceae0.1247.58e-082.02e-07
speciesRuminococcus_champanellensis-0.1247.67e-082.03e-07
speciesBifidobacterium_dentium0.1238.53e-082.25e-07
genusPrevotella0.1238.83e-082.32e-07
familyBacteroidaceae0.1231.05e-072.72e-07
genusBacteroides0.1231.05e-072.72e-07
speciesMitsuokella_unclassified-0.1221.09e-072.81e-07
speciesAggregatibacter_segnis0.1221.2e-073.08e-07
speciesEubacterium_ventriosum-0.1221.25e-073.19e-07
genusPropionibacterium-0.1211.41e-073.56e-07
speciesCampylobacter_concisus0.1211.41e-073.56e-07
speciesStreptococcus_lutetiensis0.1211.55e-073.89e-07
speciesPrevotella_stercorea0.122.17e-075.42e-07
speciesLachnospiraceae_bacterium_2_1_58FAA0.1192.41e-075.99e-07
speciesAlistipes_finegoldii-0.1183.05e-077.54e-07
genusMitsuokella-0.1183.19e-077.84e-07
speciesButyrivibrio_unclassified-0.1173.49e-078.54e-07
speciesMegasphaera_unclassified0.1173.8e-079.25e-07
speciesProteus_mirabilis0.1174.08e-079.88e-07
speciesRuminococcus_lactaris-0.1155.5e-071.32e-06
speciesStreptococcus_salivarius0.1156.04e-071.45e-06
speciesAcidaminococcus_unclassified0.1156.11e-071.45e-06
familyVeillonellaceae0.1156.13e-071.45e-06
genusSutterella-0.1156.32e-071.49e-06
familyLeuconostocaceae0.1146.98e-071.64e-06
speciesRoseburia_hominis-0.1139.22e-072.15e-06
speciesPropionibacterium_freudenreichii-0.1092.15e-065e-06
speciesClostridium_sp_L2_50-0.1082.6e-066.02e-06
speciesRoseburia_unclassified-0.1073.22e-067.41e-06
speciesEubacterium_biforme-0.1073.56e-068.16e-06
speciesBacteroides_uniformis-0.1054.92e-061.12e-05
speciesAlistipes_sp_HGB5-0.1055.05e-061.15e-05
speciesParabacteroides_unclassified0.1055.2e-061.17e-05
speciesPrevotella_copri0.1055.29e-061.19e-05
speciesLactococcus_lactis-0.1046.38e-061.43e-05
speciesBifidobacterium_animalis-0.1046.47e-061.44e-05
speciesLachnospiraceae_bacterium_1_4_56FAA0.1046.95e-061.54e-05
speciesBacteroides_coprocola0.1047.27e-061.6e-05
genusAnaerotruncus-0.1037.6e-061.67e-05
phylumActinobacteria-0.1037.67e-061.67e-05
classActinobacteria-0.1037.67e-061.67e-05
familyMyoviridae0.1038.55e-061.85e-05
speciesCoprococcus_eutactus-0.1038.76e-061.89e-05
speciesOdoribacter_unclassified-0.1038.92e-061.91e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.1029.17e-061.95e-05
familySiphoviridae-0.1029.18e-061.95e-05
speciesEnterobacteria_phage_HK5440.1029.32e-061.97e-05
speciesAlistipes_onderdonkii-0.1029.33e-061.97e-05
speciesRuminococcus_bromii-0.1029.54e-062e-05
genusOdoribacter-0.1021.08e-052.26e-05
speciesAlistipes_indistinctus-0.1011.11e-052.31e-05
speciesMethanobrevibacter_unclassified-0.11.49e-053.08e-05
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0991.84e-053.79e-05
genusLactobacillus0.0963.14e-056.44e-05
genusAnaerostipes-0.0954.08e-058.34e-05
familyLactobacillaceae0.0944.68e-059.52e-05
genusPeptostreptococcus0.0944.7e-059.52e-05
familyBacillales_noname0.0944.74e-059.52e-05
genusGemella0.0944.74e-059.52e-05
speciesEnterococcus_faecium0.0945.04e-050.000101
speciesStreptococcus_pasteurianus0.0935.53e-050.00011
speciesLactobacillus_acidophilus-0.0935.58e-050.000111
genusBifidobacterium-0.0927.02e-050.000139
speciesLeuconostoc_lactis0.0917.61e-050.00015
speciesLactobacillus_crispatus0.0917.83e-050.000153
speciesPeptostreptococcus_stomatis0.0918.56e-050.000167
speciesBacteroides_oleiciplenus0.099.95e-050.000193
orderBifidobacteriales-0.0890.0001090.00021
familyBifidobacteriaceae-0.0890.0001090.00021
familyStreptococcaceae0.0890.0001160.000223
speciesBacteroides_intestinalis0.0880.000130.000248
speciesLactobacillus_fermentum0.0880.0001410.000268
speciesOdoribacter_splanchnicus-0.0880.0001450.000275
speciesAlistipes_sp_AP11-0.0870.0001570.000296
genusActinobacillus0.0870.0001580.000296
speciesActinobacillus_unclassified0.0870.0001580.000296
genusStreptococcus0.0870.000180.000336
speciesAnaerotruncus_colihominis0.0860.0001810.000336
speciesMegamonas_rupellensis0.0850.0002270.00042
speciesHaemophilus_paraphrohaemolyticus0.0840.000290.000535
speciesOlsenella_unclassified-0.0830.0003070.000564
speciesBacteroides_xylanisolvens0.0830.0003280.0006
genusLambdalikevirus0.0830.0003310.000603
speciesBlautia_hydrogenotrophica-0.0830.0003480.000632
speciesMegamonas_hypermegale0.0810.0004860.000879
speciesBacteroides_nordii0.0810.0004930.000888
speciesLactobacillus_vaginalis0.080.0004970.000892
speciesBifidobacterium_catenulatum-0.080.0005090.00091
orderBacillales0.080.0005110.00091
speciesErysipelotrichaceae_bacterium_21_3-0.080.0005140.000912
speciesRuminococcus_callidus-0.080.0005260.00093
speciesTuricibacter_unclassified-0.080.0005640.000993
genusRuminococcaceae_noname-0.0790.0006080.00106
speciesRuminococcaceae_bacterium_D16-0.0790.0006080.00106
speciesMegamonas_funiformis0.0790.000630.0011
genusTuricibacter-0.0790.0006530.00113
speciesLactobacillus_amylovorus0.0780.000710.00123
genusGordonibacter-0.0780.0007730.00133
speciesGordonibacter_pamelaeae-0.0780.0007730.00133
familyLachnospiraceae-0.0780.0007830.00134
familyOxalobacteraceae-0.0770.0008730.00149
speciesStreptococcus_mitis_oralis_pneumoniae0.0770.0009060.00154
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0760.0009550.00162
genusOxalobacter-0.0760.0009680.00162
speciesOxalobacter_formigenes-0.0760.0009680.00162
speciesBacteroides_salyersiae0.0760.0009690.00162
speciesHoldemania_sp_AP20.0760.001010.00168
speciesPeptostreptococcaceae_noname_unclassified-0.0750.001130.00188
speciesStreptococcus_vestibularis0.0750.001160.00192
speciesLactococcus_phage_936_sensu_lato-0.0740.001350.00223
speciesBlautia_producta0.0740.001450.00238
speciesBifidobacterium_longum-0.0730.001570.00257
speciesBifidobacterium_breve0.0730.001620.00265
familyOscillospiraceae-0.0720.001710.00277
genusOscillibacter-0.0720.001710.00277
speciesBacteroides_sp_3_1_190.0720.001880.00304
genusParasutterella0.0710.00210.00337
speciesParasutterella_excrementihominis0.0710.00210.00337
speciesHaemophilus_sputorum0.0710.002160.00346
genusMethanosphaera-0.070.002390.0038
speciesMethanosphaera_stadtmanae-0.070.002390.0038
speciesEubacterium_limosum0.070.00240.0038
speciesLactobacillus_casei_paracasei-0.070.002420.00382
speciesOscillibacter_unclassified-0.070.002450.00385
speciesGemella_morbillorum0.070.002570.00402
speciesOscillibacter_sp_KLE_1728-0.070.002570.00402
genusOlsenella-0.0690.002780.00433
speciesParabacteroides_distasonis0.0670.003940.00612
familyAcidaminococcaceae0.0670.003990.00615
speciesLactococcus_phage_P680-0.0670.003990.00615
genusBlautia0.0650.004780.00735
genusSolobacterium0.0640.005350.00817
speciesSolobacterium_moorei0.0640.005350.00817
speciesBacteroides_pectinophilus-0.0640.005620.00856
speciesLactobacillus_gasseri0.0640.005870.00891
speciesLactobacillus_oris0.0630.006060.00917
speciesStreptococcus_australis0.0630.006150.00927
speciesPorphyromonas_uenonis0.0630.006260.00941
speciesClostridium_sp_ATCC_BAA_4420.0630.00680.0102
genusFaecalibacterium-0.0620.007120.0106
speciesFaecalibacterium_prausnitzii-0.0620.007120.0106
genusMyoviridae_noname0.0620.007170.0106
speciesStreptococcus_gordonii0.0610.008040.0119
genusCatenibacterium-0.0610.008150.012
speciesCatenibacterium_mitsuokai-0.0610.008150.012
speciesParaprevotella_xylaniphila-0.060.008970.0131
speciesPrevotella_bivia0.060.009040.0132
speciesAcidaminococcus_fermentans0.060.009570.0139
genusBurkholderiales_noname0.060.009880.0143
speciesBurkholderiales_bacterium_1_1_470.060.009880.0143
speciesTuricibacter_sanguinis-0.0590.01060.0153
familyBurkholderiales_noname0.0590.0110.0158
genusSiphoviridae_noname-0.0590.01110.0159
orderCaudovirales-0.0590.01120.016
orderAeromonadales0.0590.01130.0161
speciesMegasphaera_elsdenii0.0590.01140.0162
genusPeptoniphilus0.0580.01150.0163
speciesRoseburia_intestinalis-0.0580.01150.0163
speciesRuminococcus_sp_JC304-0.0580.01170.0165
genusLactococcus-0.0580.0120.0169
speciesLactobacillus_sanfranciscensis0.0570.01380.0193
speciesBacteroides_finegoldii0.0560.01640.0229
speciesLactobacillus_plantarum0.0530.02150.0299
speciesRothia_mucilaginosa0.0530.0220.0305
speciesParaprevotella_clara-0.0530.02210.0306
speciesParabacteroides_goldsteinii0.0530.02220.0306
speciesEubacterium_cylindroides-0.0530.02290.0315
speciesParabacteroides_merdae-0.0530.0230.0316
genusTunalikevirus0.0520.02430.0332
speciesCollinsella_tanakaei0.0520.02460.0336
speciesSutterella_parvirubra0.0510.02660.0362
genusDialister-0.0510.0270.0366
speciesBacteroides_clarus0.0510.02770.0375
genusClostridiaceae_noname0.0510.0280.0377
speciesClostridiaceae_bacterium_JC1180.0510.0280.0377
speciesBacteroides_massiliensis0.050.02910.039
genusAcidaminococcaceae_unclassified0.050.02970.0397
genusParaprevotella-0.050.03020.0402
speciesParaprevotella_unclassified-0.050.03020.0402
speciesClostridium_spiroforme-0.0490.03420.0453
speciesBifidobacterium_angulatum-0.0480.03790.0501
speciesDialister_invisus-0.0480.03870.051
speciesEggerthella_lenta0.0470.04090.0538
speciesEubacterium_dolichum0.0470.04430.0581
genusParabacteroides0.0460.04490.0587
familyPrevotellaceae0.0460.04910.064
speciesStreptococcus_mutans0.0450.05380.07
speciesKlebsiella_phage_KP360.0450.05410.0701
speciesRoseburia_inulinivorans0.0450.05420.0701
speciesHoldemania_unclassified-0.0440.05910.0762
speciesLactobacillus_rhamnosus-0.0430.06080.0782
speciesOscillibacter_sp_KLE_1745-0.0430.06130.0786
speciesLactococcus_phage_jm2-0.0430.06530.0835
speciesCoprobacillus_sp_D60.0420.06860.0875
familyViruses_noname0.0410.07960.101
genusViruses_noname0.0410.07960.101
familyClostridiales_Family_XI_Incertae_Sedis0.0410.07980.101
speciesBacteroides_ovatus0.040.08430.106
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0380.09760.123
speciesBacteroides_eggerthii0.0380.09790.123
speciesErysipelotrichaceae_bacterium_6_1_45-0.0380.09970.125
familyMicrococcaceae0.0370.1110.139
genusRothia0.0360.1150.143
speciesBacteroides_sp_2_1_22-0.0360.1190.148
speciesClostridium_sp_KLE_17550.0360.1210.15
speciesLactococcus_phage_bIL67-0.0350.1250.154
genusRoseburia0.0350.1340.165
genusPhascolarctobacterium-0.0330.1580.194
speciesPhascolarctobacterium_succinatutens-0.0330.1580.194
speciesErysipelotrichaceae_bacterium_3_1_530.0320.1640.201
phylumViruses_noname-0.030.1880.229
classViruses_noname-0.030.1880.229
speciesBacteroides_cellulosilyticus-0.030.1890.229
speciesCollinsella_intestinalis0.030.190.23
orderViruses_noname0.030.1970.237
speciesRuminococcus_torques-0.030.1970.237
classErysipelotrichia0.030.20.238
orderErysipelotrichales0.030.20.238
familyErysipelotrichaceae0.030.20.238
speciesErysipelotrichaceae_bacterium_2_2_44A0.030.20.238
familyPorphyromonadaceae-0.0290.2090.248
speciesLactococcus_phage_phi7-0.0280.2210.261
speciesHoldemania_filiformis-0.0280.2210.261
speciesParabacteroides_sp_D13-0.0280.2230.263
speciesBacteroides_fluxus-0.0280.230.271
speciesBacteroides_coprophilus0.0270.2350.276
speciesDesulfovibrio_piger-0.0270.2360.276
speciesMitsuokella_multacida-0.0270.2390.279
speciesBacteroides_barnesiae-0.0270.2450.286
familyPeptostreptococcaceae0.0270.250.291
speciesBacteroides_vulgatus0.0260.2520.292
speciesBacteroides_sp_1_1_6-0.0250.2830.327
speciesStreptococcus_parasanguinis0.0240.2980.344
speciesCoprobacillus_sp_29_10.0240.3070.353
orderPseudomonadales-0.0230.3120.358
speciesParabacteroides_johnsonii0.0230.3190.365
speciesLactobacillus_ruminis-0.0230.3250.371
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0220.3470.396
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0220.3480.396
speciesParabacteroides_sp_20_3-0.0210.3550.403
speciesEggerthella_sp_1_3_56FAA-0.0210.3660.414
speciesStreptococcus_phage_Sfi210.0210.3680.416
genusLachnospiraceae_noname0.0210.3690.416
speciesCollinsella_unclassified0.020.3940.443
speciesDorea_unclassified-0.020.3980.446
genusHoldemania0.0190.4040.452
genusCoriobacteriaceae_noname0.0180.4350.485
speciesLachnospiraceae_bacterium_1_1_57FAA0.0180.4370.486
genusPorphyromonas0.0180.440.489
speciesAlistipes_unclassified-0.0180.4420.49
genusButyricicoccus0.0180.4460.492
speciesButyricicoccus_pullicaecorum0.0180.4460.492
speciesPorphyromonas_asaccharolytica0.0180.4480.493
speciesBacteroides_dorei-0.0170.4540.498
speciesCoriobacteriaceae_bacterium_phI0.0170.4660.51
speciesPeptostreptococcus_anaerobius0.0170.470.514
speciesBifidobacterium_bifidum-0.0160.4970.541
speciesEubacterium_eligens-0.0160.4970.541
classBacteroidia0.0150.5140.556
orderBacteroidales0.0150.5140.556
phylumBacteroidetes0.0150.5150.556
genusErysipelotrichaceae_noname-0.0140.5420.584
genusPeptostreptococcaceae_noname0.0130.5810.625
speciesBacteroides_caccae0.0120.6170.662
familyActinomycetaceae0.010.6560.702
familyPodoviridae0.010.6590.704
speciesSlackia_piriformis-0.0090.6840.729
genusSlackia0.0090.6940.738
genusActinomyces0.0090.7020.745
genusParvimonas0.0080.7290.771
speciesParvimonas_unclassified0.0080.7340.775
genusStaphylococcus-0.0080.740.78
genusSuccinatimonas0.0080.7450.781
speciesSuccinatimonas_hippei0.0080.7450.781
classBetaproteobacteria0.0070.7570.791
familySuccinivibrionaceae0.0070.7580.791
speciesLactobacillus_reuteri0.0070.7590.791
speciesOdoribacter_laneus-0.0070.7650.795
genusDesulfovibrio-0.0070.7670.796
speciesClostridium_bartlettii0.0050.840.869
familyStaphylococcaceae0.0040.8490.875
genusButyricimonas-0.0040.8510.875
speciesButyricimonas_synergistica-0.0040.8510.875
orderActinomycetales-0.0040.8730.896
speciesBacteroides_faecis0.0030.8840.905
speciesEubacterium_sp_3_1_310.0030.9020.922
speciesStreptococcus_sanguinis0.0030.9120.93
speciesBacteroides_sp_4_3_47FAA-0.0020.9230.939
genusLeuconostoc0.0020.9310.945
speciesBacteroides_salanitronis-0.0020.9340.946
orderBurkholderiales0.0010.9590.969
familySutterellaceae0.0010.9760.984
genusSutterellaceae_unclassified0.0010.9810.987
speciesDialister_succinatiphilus0.00.9860.989
speciesLactobacillus_delbrueckii0.00.9870.989
speciesDesulfovibrio_desulfuricans0.00.9960.996
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.05375597237810.01649386313239.55835367636e-0726768.98922
Type II diabetesDenmark752770.01747181380790.01016131874748.48642645492e-0613314.36293
Crohns diseaseSpain17660.0488448144240.009979734043289.23613884625e-0518696.21446
Ulcerative colitisSpain78660.01038992316530.009979734043280.0001207097216212010.66306
Type II diabetesChina1831850.04835037909790.03513396073660.0483414299444689122.7734
Colorectal cancerAustria64350.0676471132020.02136928785830.0524274217719298010.0826
ObesityDenmark1691230.01099160416770.01800537732910.0910578158413696922.916
Type II diabetesSweden53920.01160059144240.01223087621370.3967209852361288543.6336
Rheumatoid arthritisChina127980.02898861559150.02443125384520.9563493585922894096.5085
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382