MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-03-01 11:03:14 PST
Job id & description: 1753, dec-sulp
Query type: protein
Count queries & homologs: 17, 17
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
MH0260_GL0041318440503CompleteK01592COG0076unknownunknown100.0100.0100.0
MH0095_GL0064853953582CompleteK13745COG0076unknownunknown100.0100.0100.0
MH0293_GL0068848954686CompleteK13745COG0076unknownunknown100.0100.0100.0
MH0075_GL0038504968212CompleteK13745COG0076unknownunknown100.0100.0100.0
MH0126_GL0091370978844CompleteK13745COG0076unknownunknown100.0100.0100.0
MH0141_GL0086842989062CompleteK13745COG0076unknownunknown100.0100.0100.0
MH0333_GL00000111000106CompleteK13745COG0076unknownunknown100.0100.0100.0
V1.CD22-0_GL02440851374892Lack 5'-endK13745COG0076unknownunknown100.0100.0100.0
809635352-stool1_revised1501829CompleteK01592COG0076unknownunknown100.0100.0100.0
MH0409_GL00681631556326Lack 3'-endK13745COG0076unknownunknown100.0100.0100.0
O2.CD1-0_GL00590801619272CompleteK01592COG0076unknownunknown100.0100.0100.0
339860.Msp_03291750555CompleteK01592COG0076EuryarchaeotaMethanosphaera100.0100.0100.0
O2.UC41-2_GL00475141775512Lack 5'-endK01592COG0076EuryarchaeotaMethanobrevibacter100.0100.0100.0
MH0293_GL00161791782496CompleteK01592COG0076EuryarchaeotaMethanobrevibacter100.0100.0100.0
158337416-stool1_revised2573040Lack 3'-endK13745COG0076unknownunknown100.0100.0100.0
MH0437_GL01343982931450Lack both endsK13745COG0076unknownunknown100.0100.0100.0
MH0169_GL00933024434067Lack both endsK00839COG0075unknownunknown100.0100.0100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumEuryarchaeota0.7970.00.0
classMethanobacteria0.8120.00.0
orderMethanobacteriales0.8120.00.0
familyMethanobacteriaceae0.8120.00.0
genusMethanobrevibacter0.8070.00.0
speciesMethanobrevibacter_smithii0.8110.00.0
speciesMethanobrevibacter_unclassified0.5682.22e-1601.5e-158
speciesEubacterium_siraeum0.4479.67e-935.71e-91
speciesSubdoligranulum_unclassified0.4361.37e-877.18e-86
genusSubdoligranulum0.4321.03e-854.86e-84
speciesAnaerotruncus_unclassified0.3391.34e-515.75e-50
speciesCoprococcus_catus0.3352.25e-508.85e-49
genusMethanosphaera0.3345.43e-501.83e-48
speciesMethanosphaera_stadtmanae0.3345.43e-501.83e-48
genusCoprococcus0.3322.5e-497.87e-48
familyRuminococcaceae0.3261.93e-475.69e-46
classClostridia0.321.02e-452.7e-44
orderClostridiales0.321.03e-452.7e-44
classBacteroidia-0.3151.94e-444.29e-43
orderBacteroidales-0.3151.94e-444.29e-43
phylumBacteroidetes-0.3151.95e-444.29e-43
speciesAlistipes_senegalensis0.3152e-444.29e-43
familyBacteroidaceae-0.3143.7e-447.28e-43
genusBacteroides-0.3143.7e-447.28e-43
genusButyrivibrio0.3113.14e-435.93e-42
speciesRuminococcus_gnavus-0.3027.93e-411.44e-39
speciesOlsenella_unclassified0.3011.37e-402.39e-39
phylumVerrucomicrobia0.34.34e-406.21e-39
classVerrucomicrobiae0.34.34e-406.21e-39
orderVerrucomicrobiales0.34.34e-406.21e-39
familyVerrucomicrobiaceae0.34.34e-406.21e-39
genusAkkermansia0.34.34e-406.21e-39
speciesAkkermansia_muciniphila0.34.34e-406.21e-39
phylumFirmicutes0.34.49e-406.23e-39
speciesButyrivibrio_crossotus0.2971.82e-392.45e-38
genusOxalobacter0.291.16e-371.48e-36
speciesOxalobacter_formigenes0.291.16e-371.48e-36
speciesCollinsella_aerofaciens0.291.25e-371.55e-36
familyOxalobacteraceae0.2892.9e-373.51e-36
genusPseudoflavonifractor0.2846.57e-367.56e-35
speciesPseudoflavonifractor_capillosus0.2846.57e-367.56e-35
speciesDorea_longicatena0.284.27e-354.8e-34
genusCollinsella0.284.54e-354.98e-34
genusOlsenella0.284.9e-355.26e-34
speciesEubacterium_biforme0.285.26e-355.52e-34
genusDorea0.2724.28e-334.39e-32
speciesBifidobacterium_adolescentis0.2611.97e-301.98e-29
speciesCoprococcus_comes0.2571.18e-291.16e-28
speciesCoprococcus_eutactus0.2547.44e-297.17e-28
genusDesulfovibrio0.2512.72e-282.57e-27
genusMitsuokella0.254.75e-284.4e-27
speciesLachnospiraceae_bacterium_7_1_58FAA0.256.13e-285.56e-27
speciesMitsuokella_unclassified0.2481.42e-271.26e-26
genusAnaerotruncus0.2481.64e-271.43e-26
familyBacteroidales_noname0.2463.69e-273.06e-26
genusBacteroidales_noname0.2463.69e-273.06e-26
speciesBacteroidales_bacterium_ph80.2463.69e-273.06e-26
genusFlavonifractor-0.2448.02e-276.42e-26
speciesFlavonifractor_plautii-0.2448.02e-276.42e-26
speciesRuminococcus_obeum0.2391e-257.87e-25
speciesEubacterium_hallii0.2381.39e-251.08e-24
speciesClostridium_bolteae-0.2363.71e-252.82e-24
speciesRuminococcus_champanellensis0.2331.44e-241.08e-23
genusBarnesiella0.2331.56e-241.13e-23
speciesBarnesiella_intestinihominis0.2331.56e-241.13e-23
genusErysipelotrichaceae_noname0.2331.83e-241.31e-23
speciesLachnospiraceae_bacterium_3_1_46FAA0.2313.67e-242.59e-23
speciesClostridium_citroniae-0.236.03e-244.19e-23
classErysipelotrichia0.238.22e-245.46e-23
orderErysipelotrichales0.238.22e-245.46e-23
familyErysipelotrichaceae0.238.22e-245.46e-23
orderCoriobacteriales0.2255.58e-233.61e-22
familyCoriobacteriaceae0.2255.58e-233.61e-22
speciesRoseburia_hominis0.2222.51e-221.6e-21
speciesErysipelotrichaceae_bacterium_21_30.2199.3e-225.85e-21
speciesClostridium_leptum0.2163.34e-212.07e-20
speciesBacteroides_ovatus-0.2148.17e-215.01e-20
speciesBacteroides_pectinophilus0.2122.16e-201.31e-19
speciesCoprococcus_sp_ART55_10.2081.08e-196.45e-19
speciesEubacterium_ramulus0.2071.6e-199.44e-19
speciesDesulfovibrio_desulfuricans0.2045.8e-193.38e-18
speciesDorea_formicigenerans0.2011.91e-181.1e-17
genusRuminococcaceae_noname0.1984.79e-182.69e-17
speciesRuminococcaceae_bacterium_D160.1984.79e-182.69e-17
speciesCoprobacillus_unclassified-0.1986.38e-183.54e-17
genusRuminococcus0.1961.32e-177.24e-17
familyLachnospiraceae0.1951.61e-178.73e-17
speciesRuminococcus_bromii0.1951.8e-179.65e-17
speciesEggerthella_unclassified-0.1942.21e-171.17e-16
genusCatenibacterium0.1933.9e-172.02e-16
speciesCatenibacterium_mitsuokai0.1933.9e-172.02e-16
familyEubacteriaceae0.1925.36e-172.75e-16
genusEubacterium0.1925.57e-172.83e-16
speciesStreptococcus_thermophilus0.191.2e-166.03e-16
speciesClostridium_symbiosum-0.1873.02e-161.5e-15
genusEggerthella-0.1865.89e-162.9e-15
familyFusobacteriaceae-0.1858.73e-164.25e-15
genusFusobacterium-0.1812.61e-151.26e-14
phylumFusobacteria-0.183.98e-151.86e-14
classFusobacteriia-0.183.98e-151.86e-14
orderFusobacteriales-0.183.98e-151.86e-14
speciesAlistipes_indistinctus0.185.17e-152.39e-14
genusCoprobacter0.1752.86e-141.3e-13
speciesCoprobacter_fastidiosus0.1752.86e-141.3e-13
speciesBacteroides_stercoris-0.1734.66e-142.09e-13
speciesEubacterium_cylindroides0.1719.37e-144.17e-13
speciesBacteroides_thetaiotaomicron-0.171.22e-135.38e-13
genusCoprobacillus-0.1692.03e-138.87e-13
speciesClostridiales_bacterium_1_7_47FAA-0.1682.29e-139.92e-13
phylumActinobacteria0.1682.48e-131.05e-12
classActinobacteria0.1682.48e-131.05e-12
speciesDesulfovibrio_piger0.1648.32e-133.51e-12
speciesKlebsiella_pneumoniae-0.1649.3e-133.88e-12
speciesLachnospiraceae_bacterium_1_4_56FAA-0.1649.62e-133.98e-12
genusKlebsiella-0.1621.8e-127.39e-12
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.163.51e-121.43e-11
speciesPeptostreptococcaceae_noname_unclassified0.1578.85e-123.57e-11
familySiphoviridae0.1523.76e-111.5e-10
speciesAlistipes_shahii0.1523.83e-111.52e-10
genusAdlercreutzia0.1523.96e-111.54e-10
speciesAdlercreutzia_equolifaciens0.1523.96e-111.54e-10
speciesEubacterium_rectale0.1524.34e-111.68e-10
speciesParaprevotella_unclassified0.1515.7e-112.19e-10
genusMegamonas-0.1515.99e-112.28e-10
speciesMegamonas_unclassified-0.156.3e-112.38e-10
genusParaprevotella0.157.45e-112.79e-10
speciesVeillonella_parvula-0.1498.3e-113.08e-10
speciesParaprevotella_xylaniphila0.1471.5e-105.53e-10
genusOdoribacter0.1471.81e-106.62e-10
genusVeillonella-0.1452.63e-109.55e-10
speciesAnaerostipes_hadrus0.1452.78e-101e-09
speciesClostridium_ramosum-0.1452.89e-101.03e-09
genusTuricibacter0.1444.2e-101.49e-09
genusC2likevirus0.1444.49e-101.58e-09
speciesClostridium_clostridioforme-0.1434.9e-101.71e-09
familyAcidaminococcaceae0.1435.87e-102.04e-09
speciesRuminococcus_lactaris0.1426.1e-102.1e-09
speciesC2likevirus_unclassified0.1419.29e-103.18e-09
genusBifidobacterium0.141.11e-093.77e-09
orderBifidobacteriales0.141.25e-094.18e-09
familyBifidobacteriaceae0.141.25e-094.18e-09
speciesBacteroides_fragilis-0.1382.17e-097.21e-09
speciesEubacterium_eligens0.1372.98e-099.84e-09
speciesParaprevotella_clara0.1363.14e-091.03e-08
speciesTuricibacter_unclassified0.1363.28e-091.07e-08
speciesClostridium_nexile-0.1345.34e-091.73e-08
phylumViruses_noname0.1345.46e-091.74e-08
classViruses_noname0.1345.46e-091.74e-08
speciesVeillonella_unclassified-0.1338.37e-092.65e-08
genusPhascolarctobacterium0.1311.25e-083.91e-08
speciesPhascolarctobacterium_succinatutens0.1311.25e-083.91e-08
speciesBacteroides_vulgatus-0.1273.77e-081.17e-07
speciesTuricibacter_sanguinis0.1273.96e-081.22e-07
speciesFusobacterium_mortiferum-0.1264.3e-081.32e-07
orderCaudovirales0.1264.44e-081.35e-07
speciesClostridium_sp_L2_500.1256.56e-081.98e-07
speciesSutterella_wadsworthensis0.1238.48e-082.55e-07
speciesMegasphaera_micronuciformis-0.1238.52e-082.55e-07
speciesDialister_succinatiphilus0.1221.08e-073.21e-07
speciesVeillonella_atypica-0.1221.18e-073.48e-07
speciesAnaerotruncus_colihominis-0.1211.43e-074.19e-07
speciesVeillonella_dispar-0.1211.44e-074.2e-07
speciesRuminococcus_sp_5_1_39BFAA0.1211.58e-074.58e-07
speciesWeissella_confusa-0.121.76e-075.07e-07
phylumProteobacteria-0.122.03e-075.81e-07
speciesClostridium_hathewayi-0.122.14e-076.08e-07
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.1192.59e-077.32e-07
speciesOdoribacter_laneus0.1182.95e-078.29e-07
speciesOdoribacter_splanchnicus0.1183.07e-078.57e-07
speciesRuminococcus_torques0.1174.06e-071.13e-06
speciesBifidobacterium_animalis0.1174.13e-071.14e-06
speciesClostridium_asparagiforme-0.1164.55e-071.25e-06
speciesLactococcus_lactis0.1164.86e-071.33e-06
speciesBifidobacterium_pseudocatenulatum-0.1165.47e-071.48e-06
speciesHaemophilus_parainfluenzae-0.1155.62e-071.52e-06
genusHaemophilus-0.1155.77e-071.55e-06
speciesAnaerostipes_unclassified-0.1155.95e-071.59e-06
speciesLachnospiraceae_bacterium_6_1_63FAA-0.1139.94e-072.64e-06
orderPasteurellales-0.1111.41e-063.7e-06
familyPasteurellaceae-0.1111.41e-063.7e-06
speciesBifidobacterium_longum0.1111.51e-063.94e-06
genusWeissella-0.111.9e-064.93e-06
genusSutterella0.111.97e-065.08e-06
speciesEubacterium_ventriosum0.112.02e-065.18e-06
speciesAlistipes_finegoldii0.1092.1e-065.36e-06
speciesLachnospiraceae_bacterium_2_1_58FAA-0.1092.15e-065.46e-06
speciesRuminococcus_callidus0.1092.31e-065.83e-06
speciesMegamonas_rupellensis-0.1082.71e-066.8e-06
speciesOdoribacter_unclassified0.1082.79e-066.97e-06
speciesAlistipes_onderdonkii0.1082.87e-067.13e-06
speciesFusobacterium_varium-0.1073.3e-068.15e-06
speciesBacteroides_eggerthii0.1073.44e-068.46e-06
speciesButyrivibrio_unclassified0.1064.03e-069.86e-06
speciesLactococcus_phage_P6800.1064.12e-061e-05
speciesBacteroides_xylanisolvens-0.1055.25e-061.27e-05
speciesBacteroides_cellulosilyticus0.1055.54e-061.33e-05
speciesBlautia_producta-0.1046.67e-061.6e-05
speciesLactobacillus_salivarius-0.1046.77e-061.61e-05
speciesMitsuokella_multacida0.1046.99e-061.66e-05
speciesPrevotella_buccae-0.1047.26e-061.71e-05
speciesFusobacterium_ulcerans-0.1037.76e-061.82e-05
speciesStreptococcus_mitis_oralis_pneumoniae-0.1038.29e-061.94e-05
classGammaproteobacteria-0.1011.18e-052.74e-05
genusLactococcus0.11.43e-053.31e-05
speciesMegamonas_hypermegale-0.11.46e-053.36e-05
speciesParabacteroides_sp_D130.11.56e-053.57e-05
speciesParabacteroides_goldsteinii0.0991.97e-054.49e-05
genusAnaerostipes0.0982.28e-055.17e-05
speciesPropionibacterium_freudenreichii0.0963.05e-056.89e-05
speciesMegamonas_funiformis-0.0963.16e-057.1e-05
familyPeptostreptococcaceae0.0954.04e-059.04e-05
speciesCampylobacter_concisus-0.0935.49e-050.000122
genusSiphoviridae_noname0.0917.53e-050.000167
speciesLachnospiraceae_bacterium_5_1_57FAA-0.090.0001050.000232
genusActinobacillus-0.0890.0001260.000275
speciesActinobacillus_unclassified-0.0890.0001260.000275
genusPorphyromonas0.0870.0001590.000346
speciesPorphyromonas_asaccharolytica0.0850.000250.000541
genusPeptostreptococcaceae_noname0.0840.0002980.000642
speciesLactobacillus_ruminis0.0830.0003120.000669
genusButyricimonas0.0830.0003170.000674
speciesButyricimonas_synergistica0.0830.0003170.000674
speciesAlistipes_unclassified0.0830.0003540.000749
speciesHoldemania_filiformis0.0820.0003820.000803
speciesFusobacterium_nucleatum-0.0820.0003830.000803
speciesBacteroides_nordii-0.0810.0004330.000904
speciesEnterobacter_cloacae-0.0810.0004660.000969
genusEnterobacter-0.0810.000470.000973
speciesBacteroides_salanitronis0.080.0005040.00104
speciesHaemophilus_sputorum-0.080.0005380.0011
speciesStreptococcus_pasteurianus-0.0790.0005990.00122
speciesBifidobacterium_breve-0.0790.0006060.00123
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0790.0006690.00136
speciesRoseburia_unclassified0.0770.0008290.00167
genusDialister0.0760.001040.00209
speciesBifidobacterium_catenulatum0.0750.001240.00248
orderEnterobacteriales-0.0740.001360.0027
familyEnterobacteriaceae-0.0740.001360.0027
speciesLactobacillus_delbrueckii0.0740.001430.00282
genusAggregatibacter-0.0730.00150.00295
familyBacillales_noname-0.0730.001620.00316
genusGemella-0.0730.001620.00316
speciesEggerthella_lenta-0.0720.001840.00357
speciesEubacterium_dolichum-0.0720.001850.00358
genusParabacteroides-0.0720.001860.00358
speciesLactobacillus_mucosae-0.0720.001910.00366
speciesHaemophilus_paraphrohaemolyticus-0.0710.00210.00401
speciesClostridium_sp_ATCC_BAA_442-0.0710.002120.00403
genusLachnospiraceae_noname0.070.00230.00436
speciesAlistipes_sp_HGB50.0690.002750.00519
orderViruses_noname0.0690.00290.00545
speciesAggregatibacter_segnis-0.0680.003140.00588
speciesBacteroides_oleiciplenus-0.0680.003210.00599
genusAcidaminococcaceae_unclassified0.0680.003350.00622
speciesWeissella_cibaria-0.0680.003360.00622
familyMyoviridae-0.0670.003560.00656
speciesParabacteroides_johnsonii0.0670.003790.00696
classDeltaproteobacteria0.0670.003940.00715
orderDesulfovibrionales0.0670.003940.00715
familyDesulfovibrionaceae0.0670.003940.00715
genusMegasphaera-0.0650.004970.00899
orderBacillales-0.0640.005430.00978
speciesClostridium_perfringens-0.0640.005530.00992
speciesSutterella_parvirubra-0.0640.005760.0103
speciesLactobacillus_rhamnosus0.0630.006630.0118
speciesParabacteroides_sp_20_30.0630.006680.0119
genusClostridiaceae_noname-0.0620.006940.0122
speciesClostridiaceae_bacterium_JC118-0.0620.006940.0122
genusCampylobacter-0.0620.007030.0123
speciesErysipelotrichaceae_bacterium_3_1_53-0.0620.007570.0132
speciesStreptococcus_sanguinis-0.0620.007770.0135
speciesLactobacillus_sanfranciscensis-0.0610.008020.0139
classBetaproteobacteria-0.0610.008120.014
familyPropionibacteriaceae0.0610.008350.0144
orderActinomycetales0.060.009350.016
genusPropionibacterium0.060.009530.0163
genusBurkholderiales_noname-0.060.010.017
speciesBurkholderiales_bacterium_1_1_47-0.060.010.017
speciesKlebsiella_sp_MS_92_3-0.0590.01050.0177
speciesErysipelotrichaceae_bacterium_2_2_44A0.0590.01050.0177
speciesEnterobacter_aerogenes-0.0590.01060.0178
familyBurkholderiales_noname-0.0590.01080.0181
speciesKlebsiella_unclassified-0.0590.01110.0185
speciesBifidobacterium_angulatum0.0580.01150.0191
familyVeillonellaceae-0.0580.01170.0194
genusPyramidobacter-0.0580.01240.0203
speciesPyramidobacter_piscolens-0.0580.01240.0203
classEpsilonproteobacteria-0.0580.01250.0203
orderCampylobacterales-0.0580.01250.0203
speciesOscillibacter_sp_KLE_1745-0.0580.01250.0203
speciesBacteroides_clarus0.0570.01310.0212
familyCampylobacteraceae-0.0570.01420.023
orderBurkholderiales-0.0570.01430.023
speciesAlistipes_putredinis0.0560.0150.0241
speciesOscillibacter_unclassified0.0550.01680.0269
speciesLactococcus_phage_phi70.0550.01760.0281
speciesLactobacillus_casei_paracasei0.0550.01770.0281
speciesStreptococcus_anginosus-0.0540.01890.0299
genusPeptoniphilus0.0540.01950.0307
speciesParabacteroides_merdae0.0540.01950.0307
speciesBacteroides_barnesiae0.0540.01960.0307
speciesBifidobacterium_bifidum0.0530.02070.0324
speciesStreptococcus_infantarius-0.0530.02110.0329
genusMyoviridae_noname-0.0530.02280.0354
speciesEubacterium_sp_3_1_31-0.0520.02410.0373
speciesLeuconostoc_lactis-0.0520.02490.0384
speciesBacteroides_plebeius-0.0510.02670.0411
speciesEscherichia_coli-0.0510.02840.0435
speciesPorphyromonas_uenonis0.0510.02890.0441
speciesAlistipes_sp_AP110.050.02920.0445
familyActinomycetaceae0.050.02970.0451
speciesHoldemania_sp_AP2-0.050.03030.0458
speciesCitrobacter_freundii-0.0490.03250.049
familyClostridiaceae-0.0490.03260.049
speciesPrevotella_bivia-0.0490.0330.0494
genusClostridium-0.0490.03490.0521
genusEscherichia-0.0480.03710.0552
speciesBacteroides_dorei0.0480.03730.0554
genusFaecalibacterium0.0470.04090.0603
speciesFaecalibacterium_prausnitzii0.0470.04090.0603
familyClostridiales_noname-0.0470.0410.0603
speciesStreptococcus_australis-0.0470.04320.0633
genusClostridiales_noname-0.0470.04360.0637
genusBlautia0.0470.04430.0645
genusCitrobacter-0.0460.04530.0658
genusActinomyces0.0450.05150.0746
speciesLactobacillus_oris-0.0450.05310.0766
genusAcidaminococcus0.0440.05450.0784
genusHoldemania0.0440.05590.0802
genusLeuconostoc0.0440.05780.0827
familyRikenellaceae0.0430.06270.089
genusAlistipes0.0430.06270.089
genusCoriobacteriaceae_noname0.0430.06280.089
speciesLactobacillus_crispatus-0.0430.06320.0893
speciesStreptococcus_lutetiensis-0.0420.06780.0955
speciesCoriobacteriaceae_bacterium_phI0.0420.06850.0962
orderPseudomonadales0.0420.07130.0999
speciesCitrobacter_unclassified-0.0410.0760.106
speciesLachnospiraceae_bacterium_8_1_57FAA0.0410.07910.11
speciesHoldemania_unclassified0.0410.07970.111
speciesLachnospiraceae_bacterium_5_1_63FAA0.0390.08850.122
speciesRoseburia_inulinivorans-0.0390.08920.123
genusButyricicoccus0.0390.09340.128
speciesButyricicoccus_pullicaecorum0.0390.09340.128
genusLambdalikevirus0.0390.09570.131
familyPrevotellaceae0.0380.1010.138
speciesEubacterium_limosum0.0380.1040.141
speciesPeptostreptococcus_anaerobius0.0380.1050.142
speciesBacteroides_sp_3_1_19-0.0370.1120.151
familySutterellaceae-0.0360.1240.167
speciesCoprobacillus_sp_29_10.0350.1260.169
genusParasutterella-0.0350.130.174
speciesParasutterella_excrementihominis-0.0350.130.174
speciesMegasphaera_elsdenii0.0350.1310.175
familyOscillospiraceae0.0340.1440.19
genusOscillibacter0.0340.1440.19
speciesStreptococcus_gordonii-0.0340.1440.19
speciesBlautia_hydrogenotrophica0.0340.1440.19
familyClostridiales_Family_XI_Incertae_Sedis0.0340.1450.19
speciesOscillibacter_sp_KLE_1728-0.0340.1450.19
familyLeuconostocaceae-0.0330.150.196
genusRoseburia-0.0330.1520.198
genusPantoea-0.0330.1530.198
speciesPantoea_unclassified-0.0330.1530.198
phylumSynergistetes-0.0330.1580.203
classSynergistia-0.0330.1580.203
orderSynergistales-0.0330.1580.203
familySynergistaceae-0.0330.1580.203
speciesStreptococcus_parasanguinis0.0320.1640.21
speciesAcidaminococcus_fermentans0.0320.1670.213
speciesParabacteroides_distasonis-0.0320.1710.218
speciesClostridium_bartlettii0.0310.1790.227
speciesEnterococcus_faecalis0.0310.180.228
speciesBacteroides_massiliensis-0.0310.1830.231
speciesBacteroides_sp_4_3_47FAA-0.0310.1840.232
speciesParabacteroides_unclassified-0.0310.1850.232
genusSlackia0.0310.1860.233
familyPodoviridae0.0310.1870.234
speciesAcidaminococcus_unclassified0.030.1990.248
speciesEscherichia_unclassified0.0290.2030.252
speciesBacteroides_sp_2_1_22-0.0290.210.26
speciesBacteroides_faecis0.0290.2150.266
speciesLactobacillus_fermentum-0.0290.2170.267
familyEnterococcaceae0.0290.2180.267
genusPrevotella-0.0290.2180.267
genusParvimonas0.0280.2230.273
speciesParvimonas_unclassified0.0280.2250.274
genusEnterococcus0.0280.2260.275
speciesSubdoligranulum_sp_4_3_54A2FAA0.0280.2320.282
orderLactobacillales0.0270.2420.293
familySuccinivibrionaceae0.0270.2430.293
classBacilli0.0260.2610.314
speciesPrevotella_stercorea-0.0250.2740.329
speciesDorea_unclassified0.0250.2860.343
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0240.2950.353
genusMorganella-0.0240.30.356
speciesMorganella_morganii-0.0240.30.356
genusSuccinatimonas0.0240.3010.356
speciesSuccinatimonas_hippei0.0240.3010.356
speciesLactococcus_phage_jm20.0240.3090.365
speciesEggerthella_sp_1_3_56FAA-0.0230.3130.367
speciesErysipelotrichaceae_bacterium_6_1_450.0230.3130.367
speciesEnterococcus_faecium0.0230.3130.367
genusSolobacterium-0.0230.3180.37
speciesSolobacterium_moorei-0.0230.3180.37
speciesKlebsiella_oxytoca-0.0230.3180.37
speciesAcidaminococcus_intestini0.0230.3250.377
genusGordonibacter0.0220.3390.391
speciesGordonibacter_pamelaeae0.0220.3390.391
speciesLactococcus_garvieae-0.0220.3410.393
speciesBilophila_wadsworthia0.0210.3530.405
speciesCollinsella_unclassified0.0210.3650.418
speciesStreptococcus_salivarius-0.0210.3720.425
speciesLactobacillus_vaginalis-0.020.3760.429
speciesSlackia_piriformis0.020.3940.448
speciesLactococcus_phage_bIL670.020.3960.449
genusSutterellaceae_unclassified0.020.3980.45
speciesStreptococcus_phage_Sfi21-0.0190.4030.455
familyStreptococcaceae0.0190.4210.474
speciesBacteroides_uniformis-0.0180.4330.487
speciesCoprobacillus_sp_D60.0170.4580.513
genusPeptostreptococcus-0.0170.4730.529
speciesBacteroides_finegoldii-0.0160.490.547
speciesBacteroides_intestinalis0.0160.4920.548
familyPorphyromonadaceae0.0160.4970.552
genusLactobacillus0.0160.5020.556
speciesBacteroides_sp_1_1_6-0.0150.5040.557
speciesEnterobacteria_phage_HK544-0.0150.5050.557
familyLactobacillaceae0.0150.5170.569
orderAeromonadales0.0150.5220.573
genusProteus-0.0140.5420.594
speciesBacteroides_caccae0.0130.5740.627
speciesBacteroides_fluxus-0.0130.5770.629
speciesLactobacillus_acidophilus-0.0130.5810.632
speciesBilophila_unclassified0.0130.5870.637
genusBilophila0.0120.5940.643
speciesCollinsella_tanakaei-0.0120.6030.651
speciesDialister_invisus0.0120.6090.656
speciesLactobacillus_gasseri-0.0120.6170.663
genusStreptococcus0.0120.6180.663
speciesClostridium_spiroforme-0.0110.630.674
speciesPrevotella_copri-0.010.6510.695
speciesProteus_mirabilis-0.010.6660.71
speciesCollinsella_intestinalis-0.0090.6820.725
familyViruses_noname-0.0070.7610.805
genusViruses_noname-0.0070.7610.805
genusTunalikevirus-0.0060.7830.827
speciesStreptococcus_vestibularis-0.0050.8150.859
speciesClostridium_sp_KLE_17550.0050.8170.859
speciesLactobacillus_reuteri-0.0050.820.86
speciesLachnospiraceae_bacterium_1_1_57FAA0.0050.8250.863
speciesBacteroides_coprocola-0.0050.8410.877
speciesRuminococcus_sp_JC304-0.0050.8420.877
speciesStreptococcus_mutans-0.0040.8480.882
genusStaphylococcus0.0040.8570.889
speciesBifidobacterium_dentium-0.0040.8590.889
classNegativicutes0.0040.8630.889
orderSelenomonadales0.0040.8630.889
speciesBacteroides_coprophilus-0.0040.8680.893
speciesRothia_mucilaginosa-0.0040.870.893
speciesLactobacillus_plantarum0.0030.8820.903
speciesMegasphaera_unclassified0.0030.8980.917
speciesLactococcus_phage_936_sensu_lato0.0030.9050.923
familyStaphylococcaceae0.0030.9090.925
familyMicrococcaceae-0.0020.9140.928
genusRothia-0.0020.9230.935
speciesKlebsiella_phage_KP36-0.0020.9280.938
speciesLactobacillus_amylovorus-0.0010.9570.965
speciesGemella_morbillorum-0.0010.9610.965
speciesPeptostreptococcus_stomatis-0.0010.9610.965
speciesBacteroides_salyersiae0.0010.9770.979
speciesRoseburia_intestinalis0.00.9850.985
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
ObesityDenmark1691230.001906569094960.002210235613640.010892811938424668.10891
Crohns diseaseSpain17660.0003713855848210.006846163732610.03794086956691074935.7407
Colorectal cancerAustria64350.01182568264520.005111641293710.043987718329725698.69197
Ulcerative colitisSpain78660.002728350858850.006846163732610.0605690266956527917.4144
Type II diabetesDenmark752770.002164616165770.002039021587750.2099434317941330843.6228
Liver cirrhosisChina1201140.0001379710607650.0004626232433210.2336696606271991266.8884
Rheumatoid arthritisChina127980.0007737665444270.0009557301827580.3212300971031267342.2616
Type II diabetesSweden53920.006558236516870.008427802250050.4065178759951315144.5344
Type II diabetesChina1831850.001024414829090.0005327649682620.9168384721712880595.1948
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382