MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-03-05 02:22:36 PST
Job id & description: 1759, dnab
Query type: dna
Count queries & homologs: 1, 2
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
dnab349590CompleteK01186COG4409FirmicutesBlautia100.0100.099.95
dnab350091CompleteK01186COG4409FirmicutesBlautia100.0100.094.43
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesRuminococcus_gnavus0.6111.4e-1916.61e-189
speciesCoprobacillus_unclassified0.3683.77e-618.9e-59
genusCoprobacillus0.3573.47e-575.46e-55
speciesSubdoligranulum_unclassified-0.3322.13e-492.51e-47
speciesClostridium_nexile0.3323.06e-492.89e-47
genusSubdoligranulum-0.3292.25e-481.77e-46
speciesClostridium_ramosum0.3238.69e-475.86e-45
speciesLachnospiraceae_bacterium_9_1_43BFAA0.327.36e-464.34e-44
speciesClostridium_bolteae0.314.79e-432.51e-41
speciesLachnospiraceae_bacterium_2_1_58FAA0.3081.91e-428.32e-41
speciesAlistipes_senegalensis-0.3081.94e-428.32e-41
familyFusobacteriaceae0.3021.07e-404.21e-39
phylumFusobacteria0.3011.73e-405.44e-39
classFusobacteriia0.3011.73e-405.44e-39
orderFusobacteriales0.3011.73e-405.44e-39
genusCoprococcus-0.2971.66e-394.9e-38
genusFusobacterium0.2971.97e-395.47e-38
familyBacteroidales_noname-0.2941.42e-383.35e-37
genusBacteroidales_noname-0.2941.42e-383.35e-37
speciesBacteroidales_bacterium_ph8-0.2941.42e-383.35e-37
speciesCoprococcus_catus-0.2925.71e-381.28e-36
speciesLachnospiraceae_bacterium_1_4_56FAA0.2886.01e-371.29e-35
genusEggerthella0.2725.49e-331.13e-31
speciesEggerthella_unclassified0.2684.33e-328.52e-31
speciesAnaerotruncus_unclassified-0.2684.93e-329.31e-31
speciesClostridium_symbiosum0.2635.15e-319.35e-30
speciesEubacterium_siraeum-0.2553.59e-296.28e-28
genusBlautia0.2553.84e-296.47e-28
speciesLachnospiraceae_bacterium_6_1_63FAA0.2513.74e-286.09e-27
speciesAlistipes_shahii-0.254.82e-287.58e-27
speciesMethanobrevibacter_smithii-0.248.33e-261.27e-24
speciesRoseburia_hominis-0.2381.47e-252.17e-24
familyRikenellaceae-0.2381.7e-252.36e-24
genusAlistipes-0.2381.7e-252.36e-24
genusBarnesiella-0.2373e-253.93e-24
speciesBarnesiella_intestinihominis-0.2373e-253.93e-24
genusOdoribacter-0.2364.2e-255.36e-24
classMethanobacteria-0.2341.17e-241.38e-23
orderMethanobacteriales-0.2341.17e-241.38e-23
familyMethanobacteriaceae-0.2341.17e-241.38e-23
genusMethanobrevibacter-0.2331.65e-241.9e-23
speciesBlautia_producta0.2332.23e-242.51e-23
speciesCoprococcus_sp_ART55_1-0.2291.08e-231.19e-22
genusFlavonifractor0.2291.41e-231.48e-22
speciesFlavonifractor_plautii0.2291.41e-231.48e-22
speciesClostridium_clostridioforme0.2281.48e-231.52e-22
phylumEuryarchaeota-0.2282.21e-232.22e-22
familyRuminococcaceae-0.2264.08e-234.01e-22
speciesOdoribacter_splanchnicus-0.2241.06e-221.02e-21
speciesCoprococcus_comes-0.2232.01e-221.9e-21
genusClostridium0.2213.58e-223.31e-21
familyClostridiaceae0.2213.99e-223.62e-21
speciesAnaerostipes_unclassified0.2214.76e-224.24e-21
speciesClostridium_hathewayi0.226.46e-225.65e-21
genusButyrivibrio-0.227.06e-226.06e-21
speciesAlistipes_putredinis-0.2164.07e-213.43e-20
speciesFusobacterium_ulcerans0.2149.05e-217.49e-20
genusOxalobacter-0.2122.19e-201.75e-19
speciesOxalobacter_formigenes-0.2122.19e-201.75e-19
familyOxalobacteraceae-0.215.24e-204.12e-19
genusMitsuokella-0.2097.35e-205.69e-19
speciesMitsuokella_unclassified-0.2081.04e-197.92e-19
phylumVerrucomicrobia-0.2071.69e-191.17e-18
classVerrucomicrobiae-0.2071.69e-191.17e-18
orderVerrucomicrobiales-0.2071.69e-191.17e-18
familyVerrucomicrobiaceae-0.2071.69e-191.17e-18
genusAkkermansia-0.2071.69e-191.17e-18
speciesAkkermansia_muciniphila-0.2071.69e-191.17e-18
speciesEubacterium_eligens-0.2036.35e-194.34e-18
speciesEscherichia_coli0.2021.26e-188.5e-18
speciesFusobacterium_mortiferum0.2011.58e-181.05e-17
familyEubacteriaceae-0.1985.34e-183.5e-17
genusEubacterium-0.1985.63e-183.64e-17
speciesStreptococcus_mitis_oralis_pneumoniae0.1979.87e-186.3e-17
speciesBacteroides_fragilis0.1961.11e-176.99e-17
genusAnaerotruncus-0.1961.31e-178.14e-17
speciesAlistipes_finegoldii-0.1951.64e-171.01e-16
speciesFusobacterium_varium0.1942.64e-171.6e-16
genusCoprobacter-0.1942.81e-171.66e-16
speciesCoprobacter_fastidiosus-0.1942.81e-171.66e-16
speciesEubacterium_rectale-0.1943.02e-171.76e-16
speciesPrevotella_buccae0.1933.55e-172.04e-16
speciesClostridiales_bacterium_1_7_47FAA0.1916.72e-173.82e-16
speciesRuminococcus_lactaris-0.1891.65e-169.27e-16
genusEscherichia0.1882.11e-161.17e-15
speciesParaprevotella_xylaniphila-0.1857.28e-164e-15
orderEnterobacteriales0.1857.51e-164.03e-15
familyEnterobacteriaceae0.1857.51e-164.03e-15
speciesFusobacterium_nucleatum0.1831.71e-159.07e-15
speciesBifidobacterium_adolescentis-0.1831.73e-159.07e-15
speciesEubacterium_biforme-0.1821.96e-151.02e-14
speciesParaprevotella_unclassified-0.1796.78e-153.48e-14
speciesLachnospiraceae_bacterium_5_1_57FAA0.1787.86e-153.99e-14
speciesEubacterium_ventriosum-0.1788.39e-154.21e-14
genusParaprevotella-0.1771.11e-145.51e-14
speciesEggerthella_lenta0.1761.82e-148.95e-14
speciesParaprevotella_clara-0.1752.66e-141.29e-13
speciesAlistipes_indistinctus-0.1743.41e-141.64e-13
speciesKlebsiella_pneumoniae0.1727.14e-143.4e-13
speciesRuminococcus_callidus-0.171.18e-135.57e-13
classGammaproteobacteria0.171.42e-136.64e-13
classClostridia-0.1682.56e-131.17e-12
orderClostridiales-0.1682.56e-131.17e-12
genusDesulfovibrio-0.1682.88e-131.3e-12
genusKlebsiella0.1682.9e-131.3e-12
familyBacillales_noname0.1664.84e-132.14e-12
genusGemella0.1664.84e-132.14e-12
speciesMegasphaera_micronuciformis0.1665.63e-132.46e-12
familyBacteroidaceae0.1657.59e-133.26e-12
genusBacteroides0.1657.59e-133.26e-12
genusFaecalibacterium-0.1641.01e-124.26e-12
speciesFaecalibacterium_prausnitzii-0.1641.01e-124.26e-12
speciesEubacterium_ramulus-0.1631.48e-126.18e-12
speciesButyrivibrio_crossotus-0.1621.7e-127.04e-12
speciesAlistipes_onderdonkii-0.1612.44e-121e-11
genusPseudoflavonifractor-0.1594.41e-121.78e-11
speciesPseudoflavonifractor_capillosus-0.1594.41e-121.78e-11
speciesCoprococcus_eutactus-0.1586.25e-122.5e-11
speciesClostridium_sp_L2_50-0.1577.61e-123.02e-11
speciesMethanobrevibacter_unclassified-0.1561.03e-114.05e-11
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1532.66e-111.04e-10
speciesClostridium_citroniae0.1481.17e-104.49e-10
genusAdlercreutzia-0.1481.18e-104.49e-10
speciesAdlercreutzia_equolifaciens-0.1481.18e-104.49e-10
speciesOlsenella_unclassified-0.1471.88e-107.1e-10
genusActinomyces0.1443.52e-101.32e-09
speciesDesulfovibrio_desulfuricans-0.1444.31e-101.6e-09
genusSolobacterium0.1435.51e-102.02e-09
speciesSolobacterium_moorei0.1435.51e-102.02e-09
speciesDorea_longicatena-0.1426.47e-102.35e-09
phylumProteobacteria0.1426.59e-102.37e-09
speciesCollinsella_aerofaciens-0.1427.73e-102.76e-09
orderBacillales0.141.15e-094.08e-09
speciesErysipelotrichaceae_bacterium_2_2_44A0.141.21e-094.26e-09
familyActinomycetaceae0.141.26e-094.41e-09
speciesStreptococcus_sanguinis0.1391.61e-095.59e-09
familyPrevotellaceae-0.1382.11e-097.27e-09
speciesLachnospiraceae_bacterium_2_1_46FAA0.1363.56e-091.22e-08
speciesStreptococcus_anginosus0.1354.98e-091.69e-08
speciesEubacterium_sp_3_1_310.1345.47e-091.84e-08
speciesParabacteroides_merdae-0.1346.6e-092.21e-08
speciesEubacterium_dolichum0.1292.07e-086.88e-08
speciesClostridium_leptum-0.1292.28e-087.53e-08
speciesCampylobacter_concisus0.1255.18e-081.7e-07
speciesRuminococcus_champanellensis-0.1247.78e-082.53e-07
speciesLactobacillus_ruminis-0.1238.94e-082.89e-07
speciesBacteroides_pectinophilus-0.1221.14e-073.66e-07
genusPeptostreptococcus0.1211.53e-074.88e-07
genusCatenibacterium-0.1211.58e-074.97e-07
speciesCatenibacterium_mitsuokai-0.1211.58e-074.97e-07
phylumFirmicutes-0.121.81e-075.66e-07
familyClostridiales_noname0.1183.32e-071.03e-06
speciesDesulfovibrio_piger-0.1173.6e-071.11e-06
speciesButyrivibrio_unclassified-0.1173.7e-071.13e-06
speciesRuminococcus_obeum-0.1155.93e-071.81e-06
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1147.09e-072.15e-06
genusAggregatibacter0.1147.28e-072.19e-06
speciesStreptococcus_vestibularis0.1139.67e-072.89e-06
genusRuminococcaceae_noname-0.1111.39e-064.1e-06
speciesRuminococcaceae_bacterium_D16-0.1111.39e-064.1e-06
genusCampylobacter0.1111.41e-064.13e-06
speciesRoseburia_inulinivorans-0.1111.49e-064.34e-06
genusClostridiales_noname0.1111.51e-064.37e-06
speciesRuminococcus_bromii-0.1111.58e-064.55e-06
speciesMitsuokella_multacida-0.1111.62e-064.63e-06
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1092.38e-066.77e-06
genusOlsenella-0.1082.78e-067.86e-06
familyCampylobacteraceae0.1082.95e-068.29e-06
genusMegasphaera0.1073.21e-068.91e-06
speciesEubacterium_hallii-0.1073.21e-068.91e-06
speciesVeillonella_dispar0.1055.39e-061.49e-05
speciesErysipelotrichaceae_bacterium_3_1_530.1046.09e-061.67e-05
speciesAggregatibacter_segnis0.1046.18e-061.69e-05
speciesVeillonella_parvula0.1046.24e-061.69e-05
speciesVeillonella_atypica0.1046.55e-061.77e-05
familyStreptococcaceae0.1038.32e-062.23e-05
genusStreptococcus0.1038.36e-062.23e-05
genusVeillonella0.1021.08e-052.86e-05
speciesGemella_morbillorum0.1011.12e-052.95e-05
genusCollinsella-0.1011.15e-053.02e-05
genusEnterococcus0.1011.28e-053.34e-05
familyEnterococcaceae0.1011.31e-053.36e-05
genusClostridiaceae_noname0.1011.31e-053.36e-05
speciesClostridiaceae_bacterium_JC1180.1011.31e-053.36e-05
speciesStreptococcus_gordonii0.11.36e-053.47e-05
speciesLactobacillus_salivarius0.0991.78e-054.52e-05
speciesSutterella_wadsworthensis-0.0982.03e-055.09e-05
genusButyricimonas-0.0982.04e-055.09e-05
speciesButyricimonas_synergistica-0.0982.04e-055.09e-05
speciesPeptostreptococcus_stomatis0.0982.06e-055.12e-05
speciesClostridium_asparagiforme0.0982.18e-055.39e-05
speciesHaemophilus_paraphrohaemolyticus0.0982.26e-055.56e-05
speciesClostridium_perfringens0.0982.31e-055.65e-05
speciesCollinsella_intestinalis0.0972.52e-056.13e-05
speciesClostridium_sp_ATCC_BAA_4420.0972.57e-056.22e-05
classEpsilonproteobacteria0.0962.99e-057.16e-05
orderCampylobacterales0.0962.99e-057.16e-05
familyAcidaminococcaceae-0.0953.59e-058.56e-05
genusMegamonas0.0953.73e-058.85e-05
speciesMegamonas_unclassified0.0954.17e-059.84e-05
genusPhascolarctobacterium-0.0944.93e-050.000115
speciesPhascolarctobacterium_succinatutens-0.0944.93e-050.000115
genusLachnospiraceae_noname0.0944.94e-050.000115
genusDorea-0.0945.02e-050.000116
speciesMegamonas_rupellensis0.0935.19e-050.000119
genusPantoea0.0926.24e-050.000142
speciesPantoea_unclassified0.0926.24e-050.000142
speciesBifidobacterium_pseudocatenulatum0.0926.44e-050.000146
speciesEubacterium_cylindroides-0.0917.57e-050.000171
speciesStreptococcus_infantarius0.0917.63e-050.000171
classBacilli0.0917.94e-050.000178
speciesLactobacillus_fermentum0.099.08e-050.000202
speciesBacteroides_uniformis-0.099.29e-050.000206
speciesErysipelotrichaceae_bacterium_6_1_450.090.0001030.000227
familyPorphyromonadaceae-0.0890.0001090.000239
speciesRuminococcus_torques0.0890.0001150.000251
orderLactobacillales0.0890.0001190.000258
speciesDorea_formicigenerans-0.0890.0001190.000258
speciesOscillibacter_unclassified-0.0880.0001280.000276
speciesBacteroides_thetaiotaomicron0.0880.0001320.000283
speciesAlistipes_sp_HGB5-0.0880.0001340.000286
speciesParabacteroides_unclassified0.0880.0001450.000308
genusMethanosphaera-0.0870.0001580.000333
speciesMethanosphaera_stadtmanae-0.0870.0001580.000333
genusRoseburia-0.0870.0001650.000346
speciesEggerthella_sp_1_3_56FAA0.0860.0001910.000399
speciesStreptococcus_salivarius0.0850.0002160.000449
speciesKlebsiella_unclassified0.0850.0002390.000495
genusSutterella-0.0840.0002710.000559
speciesLactobacillus_rhamnosus0.0830.0003070.00063
familyOscillospiraceae-0.0830.0003180.000647
genusOscillibacter-0.0830.0003180.000647
orderActinomycetales0.0830.0003340.000677
speciesStreptococcus_pasteurianus0.0830.0003390.000684
speciesDialister_succinatiphilus-0.0820.0003660.000735
familyClostridiales_Family_XI_Incertae_Sedis0.0820.0003940.000788
genusButyricicoccus0.0810.0004590.00091
speciesButyricicoccus_pullicaecorum0.0810.0004590.00091
speciesWeissella_cibaria0.080.0005240.00103
genusRuminococcus-0.080.0005650.00111
speciesStreptococcus_australis0.0780.0007130.0014
speciesAnaerotruncus_colihominis0.0780.000720.0014
speciesEnterococcus_faecium0.0750.001120.00218
genusParvimonas0.0750.001130.00219
speciesParvimonas_unclassified0.0750.001140.0022
speciesStreptococcus_mutans0.0750.001170.00224
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0750.001240.00237
speciesBlautia_hydrogenotrophica0.0740.001380.00262
speciesMegamonas_hypermegale0.0740.001380.00262
speciesLactobacillus_gasseri0.0730.001530.00288
speciesClostridium_bartlettii0.0730.001530.00288
speciesBacteroides_stercoris0.0730.001640.00307
speciesLactobacillus_mucosae0.0730.001650.00308
familySutterellaceae-0.0720.001970.00366
speciesRothia_mucilaginosa0.0710.001990.00368
speciesBifidobacterium_dentium0.070.002390.00441
speciesVeillonella_unclassified0.070.00260.00478
familyPeptostreptococcaceae0.0690.00280.00512
genusParasutterella-0.0690.002890.00525
speciesParasutterella_excrementihominis-0.0690.002890.00525
speciesProteus_mirabilis0.0690.002920.00528
speciesStreptococcus_lutetiensis0.0690.003020.00544
speciesBacteroides_caccae-0.0670.003550.00637
genusProteus0.0670.003880.00694
speciesRoseburia_intestinalis-0.0670.003970.00707
speciesHaemophilus_sputorum0.0660.00410.00728
familyLeuconostocaceae0.0660.004280.00757
speciesPrevotella_copri-0.0660.004490.00791
orderBurkholderiales-0.0650.004810.00844
genusActinobacillus0.0650.004870.00848
speciesActinobacillus_unclassified0.0650.004870.00848
familyMicrococcaceae0.0640.00530.0092
genusRothia0.0640.005620.00972
speciesLactococcus_phage_936_sensu_lato-0.0640.005660.00975
genusAnaerostipes0.0630.006320.0108
speciesEnterobacteria_phage_HK5440.0630.00640.0109
classBetaproteobacteria-0.0620.007080.0121
speciesPrevotella_bivia0.0620.00760.0129
speciesBacteroides_cellulosilyticus-0.0610.007970.0135
speciesCitrobacter_unclassified0.060.008960.0151
genusSlackia0.060.009050.0152
speciesBifidobacterium_breve0.060.00940.0157
genusMorganella0.060.009920.0165
speciesMorganella_morganii0.060.009920.0165
speciesStreptococcus_parasanguinis0.0590.01030.0171
speciesOscillibacter_sp_KLE_17280.0590.01110.0183
classDeltaproteobacteria-0.0590.01120.0183
orderDesulfovibrionales-0.0590.01120.0183
familyDesulfovibrionaceae-0.0590.01120.0183
genusPeptostreptococcaceae_noname0.0590.01130.0184
speciesEubacterium_limosum0.0570.01310.0212
speciesSubdoligranulum_sp_4_3_54A2FAA0.0570.01330.0215
speciesBacteroides_sp_4_3_47FAA-0.0570.01340.0216
speciesSutterella_parvirubra0.0550.01710.0275
genusWeissella0.0550.01840.0294
genusCitrobacter0.0540.01870.0298
speciesOdoribacter_unclassified-0.0530.0210.0334
speciesParabacteroides_sp_D13-0.0530.02140.0339
speciesBacteroides_salanitronis-0.0530.02150.0339
speciesAlistipes_sp_AP11-0.0530.02170.0341
speciesBifidobacterium_angulatum-0.0520.02420.0378
speciesEscherichia_unclassified0.0520.02420.0378
speciesLactococcus_phage_P680-0.0510.02780.0433
speciesHoldemania_unclassified-0.050.03030.047
speciesParabacteroides_goldsteinii-0.050.03040.047
speciesEnterococcus_faecalis0.050.0310.0478
speciesOdoribacter_laneus-0.050.03230.0497
familyLactobacillaceae0.0490.03240.0497
speciesBacteroides_ovatus0.0490.03360.0513
speciesClostridium_sp_KLE_17550.0490.0340.0518
speciesKlebsiella_oxytoca0.0490.03520.0534
speciesC2likevirus_unclassified-0.0480.03730.0564
speciesLactobacillus_amylovorus0.0480.03810.0575
phylumBacteroidetes0.0480.03960.0591
classBacteroidia0.0480.03960.0591
orderBacteroidales0.0480.03960.0591
speciesBacteroides_dorei-0.0470.04030.06
speciesLachnospiraceae_bacterium_5_1_63FAA0.0470.04110.061
speciesClostridium_spiroforme0.0470.04130.0611
genusDialister-0.0460.04460.0658
genusLeuconostoc0.0460.04480.0659
speciesBacteroides_intestinalis-0.0460.04570.0669
speciesBacteroides_coprophilus-0.0460.04580.0669
familyPropionibacteriaceae0.0460.04730.0689
genusC2likevirus-0.0450.0510.0741
speciesCitrobacter_freundii0.0450.05220.0756
genusLactobacillus0.0440.05560.0803
speciesLactobacillus_oris0.0440.0570.082
orderPseudomonadales0.0430.06070.0871
speciesCollinsella_unclassified0.0430.06530.0931
speciesBacteroides_clarus-0.0430.06530.0931
genusBurkholderiales_noname-0.0420.07110.101
speciesBurkholderiales_bacterium_1_1_47-0.0420.07110.101
genusAcidaminococcaceae_unclassified-0.0420.07210.102
speciesBacteroides_finegoldii-0.0420.07250.102
familyBurkholderiales_noname-0.0410.07340.103
familyMyoviridae0.0410.0770.108
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0410.07830.109
speciesBacteroides_eggerthii-0.040.08440.118
speciesBacteroides_faecis-0.0390.08780.122
genusSutterellaceae_unclassified-0.0390.09190.127
familyVeillonellaceae0.0390.09250.128
familySuccinivibrionaceae-0.0380.1010.139
genusPeptoniphilus0.0380.1020.14
speciesPeptostreptococcus_anaerobius0.0380.1030.141
speciesDorea_unclassified0.0380.1030.141
genusPropionibacterium0.0370.1080.147
speciesLactobacillus_delbrueckii0.0370.1110.15
speciesBacteroides_vulgatus0.0370.1110.15
speciesBacteroides_xylanisolvens0.0360.1150.155
speciesBacteroides_nordii-0.0360.1160.156
genusPrevotella-0.0360.1180.158
orderCoriobacteriales-0.0360.1220.162
familyCoriobacteriaceae-0.0360.1220.162
speciesSlackia_piriformis0.0360.1220.162
genusSuccinatimonas-0.0360.1250.165
genusErysipelotrichaceae_noname-0.0360.1250.165
speciesSuccinatimonas_hippei-0.0360.1250.165
speciesHoldemania_filiformis-0.0350.1320.174
speciesAnaerostipes_hadrus-0.0340.1460.191
speciesHoldemania_sp_AP20.0330.1490.195
genusTunalikevirus-0.0330.1530.199
speciesPeptostreptococcaceae_noname_unclassified-0.0330.1550.202
speciesLactobacillus_crispatus0.0320.1620.21
speciesBacteroides_oleiciplenus0.0320.1630.211
familySiphoviridae-0.0320.1680.217
genusPorphyromonas-0.0310.1750.225
genusLambdalikevirus0.0310.1810.232
speciesPropionibacterium_freudenreichii-0.0310.1850.237
genusSiphoviridae_noname-0.0310.1870.239
speciesWeissella_confusa0.030.1880.239
speciesEnterobacter_aerogenes0.030.1890.24
speciesCollinsella_tanakaei0.030.1970.249
speciesMegamonas_funiformis0.030.1980.25
speciesKlebsiella_phage_KP36-0.030.2010.253
genusGordonibacter-0.0290.2110.264
speciesGordonibacter_pamelaeae-0.0290.2110.264
genusHaemophilus0.0280.220.274
speciesLactococcus_lactis0.0280.220.274
speciesMegasphaera_unclassified0.0280.2270.282
genusMyoviridae_noname0.0280.230.285
speciesHaemophilus_parainfluenzae0.0280.2320.286
familyViruses_noname0.0280.2330.286
genusViruses_noname0.0280.2330.286
orderPasteurellales0.0260.2540.311
familyPasteurellaceae0.0260.2540.311
genusTuricibacter-0.0260.2590.316
speciesEnterobacter_cloacae0.0260.260.316
speciesCoriobacteriaceae_bacterium_phI0.0260.2610.317
speciesParabacteroides_johnsonii-0.0250.2730.33
genusEnterobacter0.0250.2880.347
speciesLactococcus_garvieae0.0250.2880.347
speciesRuminococcus_sp_JC3040.0240.2970.356
speciesTuricibacter_unclassified-0.0240.2970.356
speciesAlistipes_unclassified0.0240.2980.356
speciesAcidaminococcus_fermentans-0.0240.3070.366
speciesPrevotella_stercorea0.0230.3180.378
genusCoriobacteriaceae_noname0.0230.3220.382
speciesAcidaminococcus_intestini0.0230.3260.386
speciesStreptococcus_phage_Sfi210.0220.3440.406
speciesBilophila_wadsworthia-0.0210.3550.418
speciesBacteroides_sp_2_1_220.020.3930.461
familyPodoviridae0.0190.4080.478
genusLactococcus0.0190.4090.478
speciesPorphyromonas_uenonis-0.0190.4240.494
speciesPorphyromonas_asaccharolytica-0.0180.4380.509
speciesMegasphaera_elsdenii0.0180.4410.511
speciesStreptococcus_thermophilus-0.0180.4490.519
speciesLactobacillus_casei_paracasei-0.0170.4730.546
speciesLactobacillus_acidophilus0.0160.50.576
speciesLachnospiraceae_bacterium_1_1_57FAA0.0150.5130.589
speciesErysipelotrichaceae_bacterium_21_30.0150.520.596
speciesBifidobacterium_animalis-0.0140.5470.625
genusBilophila-0.0140.5570.635
speciesRoseburia_unclassified-0.0130.560.637
phylumViruses_noname-0.0130.5650.639
classViruses_noname-0.0130.5650.639
familyLachnospiraceae-0.0130.5660.639
speciesBilophila_unclassified-0.0130.5680.64
speciesLeuconostoc_lactis0.0130.570.641
speciesBacteroides_fluxus0.0130.5720.641
speciesCoprobacillus_sp_29_10.0130.5780.646
speciesBacteroides_plebeius0.0130.5860.654
genusHoldemania-0.0120.590.655
speciesBifidobacterium_catenulatum-0.0120.590.655
speciesBacteroides_barnesiae-0.0120.5910.655
speciesCoprobacillus_sp_D60.0120.6030.667
genusBifidobacterium-0.0120.6140.677
speciesBacteroides_sp_3_1_19-0.0120.6150.677
speciesTuricibacter_sanguinis-0.0110.6220.683
orderAeromonadales0.0110.6310.691
speciesLactococcus_phage_phi7-0.0110.6330.692
classErysipelotrichia-0.0110.6390.692
orderErysipelotrichales-0.0110.6390.692
familyErysipelotrichaceae-0.0110.6390.692
speciesLactobacillus_vaginalis0.0110.6390.692
speciesLactobacillus_plantarum-0.010.670.724
orderBifidobacteriales-0.0090.6920.744
familyBifidobacteriaceae-0.0090.6920.744
speciesBacteroides_massiliensis0.0090.70.751
speciesBacteroides_salyersiae0.0090.7030.752
familyStaphylococcaceae0.0080.7320.782
speciesLactococcus_phage_jm2-0.0080.7430.792
speciesBacteroides_sp_1_1_6-0.0070.7570.805
orderCaudovirales-0.0060.7850.833
genusStaphylococcus0.0060.7920.838
speciesRuminococcus_sp_5_1_39BFAA0.0060.7970.842
genusPyramidobacter0.0060.8010.842
speciesPyramidobacter_piscolens0.0060.8010.842
speciesParabacteroides_distasonis-0.0060.810.85
genusParabacteroides0.0050.820.858
speciesKlebsiella_sp_MS_92_30.0050.8350.872
phylumSynergistetes-0.0040.8540.884
classSynergistia-0.0040.8540.884
orderSynergistales-0.0040.8540.884
familySynergistaceae-0.0040.8540.884
speciesLactobacillus_sanfranciscensis0.0040.8670.895
speciesDialister_invisus-0.0040.8710.897
speciesLactococcus_phage_bIL67-0.0040.8720.897
speciesOscillibacter_sp_KLE_1745-0.0040.8780.901
speciesParabacteroides_sp_20_3-0.0030.8820.903
classNegativicutes0.0030.9110.929
orderSelenomonadales0.0030.9110.929
speciesLactobacillus_reuteri0.0030.9140.93
speciesBacteroides_coprocola-0.0020.9180.932
speciesBifidobacterium_longum0.0020.9290.941
orderViruses_noname0.0020.9360.946
genusAcidaminococcus-0.0010.9710.979
speciesAcidaminococcus_unclassified0.0010.980.986
phylumActinobacteria0.00.9960.998
classActinobacteria0.00.9960.998
speciesBifidobacterium_bifidum0.00.9990.999
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.001193560408160.0002346237444189.82918307784e-0519146.36409
Liver cirrhosisChina1201140.004183054756880.0006979282873110.008180265631461043435.0499
ObesityDenmark1691230.0001582629562018.20409436679e-050.1967397899361087935.7732
Type II diabetesSweden53920.0002275791525990.0002148391752620.6427355737071998767.6837
Colorectal cancerAustria64350.002180591452140.009296587001410.7082231714222328278.7725
Rheumatoid arthritisChina127980.001555738644640.001024714472610.8008733757182496183.2394
Type II diabetesChina1831850.002582907970250.001958699592490.8528937159792751090.9151
Ulcerative colitisSpain78660.0002925361177670.0002346237444180.858245433912703189.17
Type II diabetesDenmark752770.000425879970090.0001274472523940.8967417721922853693.5392
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382