MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-03-06 00:56:32 PST
Job id & description: 1760, 1
Query type: dna
Count queries & homologs: 1, 1
Min % identity & max e-value: 70%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
12495619Completeunknownunknownunknownunknown100.0100.099.59
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesRuminococcus_gnavus0.6417.63e-2173.6e-214
speciesClostridium_nexile0.4419.47e-902.23e-87
familyFusobacteriaceae0.4221.88e-812.96e-79
genusFusobacterium0.4171.71e-792.02e-77
speciesSubdoligranulum_unclassified-0.4163.35e-792.81e-77
phylumFusobacteria0.4164.76e-792.81e-77
classFusobacteriia0.4164.76e-792.81e-77
orderFusobacteriales0.4164.76e-792.81e-77
genusSubdoligranulum-0.4093.15e-761.65e-74
speciesCoprobacillus_unclassified0.3891.02e-684.81e-67
genusCoprobacillus0.3721.52e-626.52e-61
speciesEubacterium_siraeum-0.3671.36e-605.35e-59
speciesClostridium_bolteae0.3527.99e-562.9e-54
speciesClostridium_ramosum0.3415.21e-521.76e-50
genusCoprococcus-0.3391.33e-514.19e-50
speciesAnaerotruncus_unclassified-0.3353.02e-508.91e-49
speciesKlebsiella_pneumoniae0.3315.12e-491.42e-47
familyBacteroidales_noname-0.3291.5e-483.54e-47
genusBacteroidales_noname-0.3291.5e-483.54e-47
speciesBacteroidales_bacterium_ph8-0.3291.5e-483.54e-47
speciesLachnospiraceae_bacterium_2_1_58FAA0.3253.11e-476.99e-46
speciesCoprococcus_catus-0.3253.73e-478e-46
genusKlebsiella0.3215.65e-461.16e-44
classGammaproteobacteria0.3153.19e-446.27e-43
speciesLachnospiraceae_bacterium_9_1_43BFAA0.3137.55e-441.43e-42
speciesFusobacterium_varium0.3099.2e-431.67e-41
speciesClostridium_symbiosum0.3091.29e-422.26e-41
orderEnterobacteriales0.3073.5e-425.7e-41
familyEnterobacteriaceae0.3073.5e-425.7e-41
speciesEscherichia_coli0.3052.01e-413.16e-40
genusEscherichia0.3036.43e-419.79e-40
speciesFusobacterium_mortiferum0.33.44e-405.07e-39
speciesBifidobacterium_adolescentis-0.2955.82e-398.32e-38
phylumVerrucomicrobia-0.2853.05e-363.69e-35
classVerrucomicrobiae-0.2853.05e-363.69e-35
orderVerrucomicrobiales-0.2853.05e-363.69e-35
familyVerrucomicrobiaceae-0.2853.05e-363.69e-35
genusAkkermansia-0.2853.05e-363.69e-35
speciesAkkermansia_muciniphila-0.2853.05e-363.69e-35
speciesCoprococcus_comes-0.2836.78e-368e-35
speciesAlistipes_senegalensis-0.2781.26e-341.45e-33
speciesFusobacterium_ulcerans0.2741.39e-331.56e-32
genusBarnesiella-0.2717.06e-337.57e-32
speciesBarnesiella_intestinihominis-0.2717.06e-337.57e-32
genusButyrivibrio-0.271.56e-321.64e-31
speciesRoseburia_hominis-0.2683.25e-323.33e-31
familyRuminococcaceae-0.2652.16e-312.17e-30
speciesLachnospiraceae_bacterium_6_1_63FAA0.2652.25e-312.21e-30
speciesEggerthella_unclassified0.2644.34e-314.18e-30
speciesMethanobrevibacter_smithii-0.2636.84e-316.46e-30
phylumProteobacteria0.2627.74e-317.16e-30
speciesClostridium_leptum-0.2628.22e-317.46e-30
genusPseudoflavonifractor-0.2621.19e-301.04e-29
speciesPseudoflavonifractor_capillosus-0.2621.19e-301.04e-29
speciesClostridiales_bacterium_1_7_47FAA0.2611.85e-301.59e-29
classMethanobacteria-0.2612.04e-301.66e-29
orderMethanobacteriales-0.2612.04e-301.66e-29
familyMethanobacteriaceae-0.2612.04e-301.66e-29
genusEggerthella0.2596.09e-304.87e-29
genusMethanobrevibacter-0.2571.12e-298.81e-29
speciesCollinsella_aerofaciens-0.2562.64e-292.04e-28
familyClostridiaceae0.2553.88e-292.95e-28
phylumEuryarchaeota-0.2554.51e-293.38e-28
genusClostridium0.2531.24e-289.15e-28
familyRikenellaceae-0.2521.45e-281.04e-27
genusAlistipes-0.2521.45e-281.04e-27
genusAnaerotruncus-0.2521.58e-281.11e-27
speciesDorea_longicatena-0.2481.26e-278.75e-27
speciesClostridium_hathewayi0.2481.36e-279.3e-27
genusCollinsella-0.2431.8e-261.21e-25
speciesMegasphaera_micronuciformis0.2391.25e-258.31e-25
speciesBacteroides_fragilis0.2381.72e-251.13e-24
speciesEubacterium_rectale-0.2372.94e-251.9e-24
speciesEubacterium_ramulus-0.2356.28e-254.01e-24
familyEubacteriaceae-0.237.14e-244.49e-23
genusEubacterium-0.237.62e-244.73e-23
speciesAnaerostipes_unclassified0.2291.12e-236.87e-23
speciesPrevotella_buccae0.2272.82e-231.71e-22
speciesVeillonella_parvula0.2231.9e-221.14e-21
genusFlavonifractor0.2214.92e-222.87e-21
speciesFlavonifractor_plautii0.2214.92e-222.87e-21
speciesLachnospiraceae_bacterium_7_1_58FAA-0.225.56e-223.2e-21
genusBlautia0.2191.17e-216.65e-21
genusVeillonella0.2172.73e-211.53e-20
speciesLachnospiraceae_bacterium_1_4_56FAA0.2148.79e-214.88e-20
familyBacteroidaceae0.2149.28e-215.03e-20
genusBacteroides0.2149.28e-215.03e-20
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2131.4e-207.51e-20
genusOxalobacter-0.2095.49e-202.88e-19
speciesOxalobacter_formigenes-0.2095.49e-202.88e-19
speciesFusobacterium_nucleatum0.2095.76e-202.99e-19
familyOxalobacteraceae-0.2081.09e-195.53e-19
genusOdoribacter-0.2081.09e-195.53e-19
speciesBlautia_producta0.2071.41e-197.08e-19
speciesEubacterium_hallii-0.2071.48e-197.35e-19
speciesAlistipes_putredinis-0.2052.81e-191.38e-18
speciesClostridium_clostridioforme0.2054.15e-192.02e-18
speciesMitsuokella_unclassified-0.2039.04e-194.35e-18
classClostridia-0.2011.45e-186.84e-18
orderClostridiales-0.2011.45e-186.84e-18
genusCoprobacter-0.2011.62e-187.5e-18
speciesCoprobacter_fastidiosus-0.2011.62e-187.5e-18
genusDorea-0.2011.65e-187.56e-18
speciesClostridium_citroniae0.2011.75e-187.94e-18
genusMitsuokella-0.2011.83e-188.23e-18
genusAdlercreutzia-0.2011.93e-188.51e-18
speciesAdlercreutzia_equolifaciens-0.2011.93e-188.51e-18
speciesOdoribacter_splanchnicus-0.22.59e-181.13e-17
speciesCoprococcus_sp_ART55_1-0.1984.62e-182e-17
speciesRuminococcus_lactaris-0.1978.22e-183.53e-17
speciesStreptococcus_mitis_oralis_pneumoniae0.1961.05e-174.46e-17
speciesAlistipes_shahii-0.1961.09e-174.59e-17
speciesEubacterium_biforme-0.1942.25e-179.4e-17
speciesLactobacillus_salivarius0.1942.82e-171.17e-16
speciesVeillonella_dispar0.1918.99e-173.69e-16
speciesButyrivibrio_crossotus-0.1891.58e-166.43e-16
speciesClostridium_perfringens0.1874.02e-161.62e-15
speciesVeillonella_unclassified0.1864.81e-161.92e-15
speciesLachnospiraceae_bacterium_2_1_46FAA0.1865.59e-162.22e-15
genusMegasphaera0.1858.8e-163.46e-15
speciesAlistipes_onderdonkii-0.1841.12e-154.37e-15
genusDesulfovibrio-0.1831.34e-155.18e-15
genusMegamonas0.1822.4e-159.21e-15
speciesMegamonas_unclassified0.1822.44e-159.29e-15
speciesBifidobacterium_pseudocatenulatum0.1813.48e-151.31e-14
speciesMethanobrevibacter_unclassified-0.1813.67e-151.37e-14
genusRuminococcaceae_noname-0.185.05e-151.86e-14
speciesRuminococcaceae_bacterium_D16-0.185.05e-151.86e-14
speciesAlistipes_indistinctus-0.1787.51e-152.75e-14
speciesBacteroides_stercoris0.1789e-153.27e-14
speciesCoprococcus_eutactus-0.1761.71e-146.16e-14
orderCoriobacteriales-0.1761.84e-146.53e-14
familyCoriobacteriaceae-0.1761.84e-146.53e-14
speciesVeillonella_atypica0.1762.01e-147.08e-14
genusClostridiales_noname0.1735.4e-141.89e-13
speciesOlsenella_unclassified-0.1726.2e-142.15e-13
speciesLactobacillus_mucosae0.1711.03e-133.55e-13
genusEnterobacter0.1691.75e-135.99e-13
familyBacillales_noname0.1691.85e-136.24e-13
genusGemella0.1691.85e-136.24e-13
speciesStreptococcus_anginosus0.1673.38e-131.13e-12
speciesAlistipes_finegoldii-0.1673.92e-131.3e-12
speciesEnterobacter_cloacae0.1656.8e-132.24e-12
speciesRuminococcus_obeum-0.1631.31e-124.29e-12
speciesC2likevirus_unclassified-0.1621.62e-125.27e-12
speciesParaprevotella_xylaniphila-0.1621.83e-125.92e-12
familySiphoviridae-0.1622.06e-126.61e-12
speciesEubacterium_eligens-0.163.09e-129.85e-12
genusC2likevirus-0.1594.22e-121.34e-11
speciesBacteroides_thetaiotaomicron0.1586.29e-121.98e-11
speciesHaemophilus_parainfluenzae0.1578.27e-122.59e-11
genusPantoea0.1579.77e-123.01e-11
speciesPantoea_unclassified0.1579.77e-123.01e-11
speciesParaprevotella_unclassified-0.1561.08e-113.31e-11
speciesButyrivibrio_unclassified-0.1561.1e-113.35e-11
genusCatenibacterium-0.1561.25e-113.76e-11
speciesCatenibacterium_mitsuokai-0.1561.25e-113.76e-11
genusHaemophilus0.1561.3e-113.88e-11
orderBacillales0.1561.35e-114.01e-11
speciesStreptococcus_australis0.1551.37e-114.04e-11
speciesCampylobacter_concisus0.1551.51e-114.43e-11
genusParaprevotella-0.1551.73e-115.04e-11
orderPasteurellales0.1533.1e-118.92e-11
familyPasteurellaceae0.1533.1e-118.92e-11
speciesClostridium_sp_L2_50-0.1533.35e-119.58e-11
speciesOscillibacter_unclassified-0.1524.3e-111.22e-10
familyOscillospiraceae-0.1514.64e-111.3e-10
genusOscillibacter-0.1514.64e-111.3e-10
genusRuminococcus-0.156.16e-111.72e-10
speciesStreptococcus_infantarius0.157.07e-111.96e-10
speciesAggregatibacter_segnis0.1471.48e-104.09e-10
speciesEubacterium_ventriosum-0.1471.64e-104.5e-10
genusPeptostreptococcus0.1471.77e-104.83e-10
speciesDorea_formicigenerans-0.1452.97e-108.06e-10
phylumFirmicutes-0.1453.26e-108.79e-10
speciesLachnospiraceae_bacterium_5_1_57FAA0.1453.28e-108.8e-10
speciesSutterella_wadsworthensis-0.1453.32e-108.85e-10
genusOlsenella-0.1443.93e-101.04e-09
speciesCitrobacter_unclassified0.1434.81e-101.27e-09
speciesKlebsiella_unclassified0.1426.41e-101.68e-09
speciesStreptococcus_pasteurianus0.1426.89e-101.8e-09
speciesRuminococcus_callidus-0.1427.65e-101.98e-09
speciesDesulfovibrio_desulfuricans-0.1391.66e-094.28e-09
genusCitrobacter0.1382.16e-095.54e-09
speciesBacteroides_ovatus0.1382.31e-095.89e-09
speciesEnterobacter_aerogenes0.1372.44e-096.19e-09
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1372.9e-097.32e-09
classBacilli0.1372.92e-097.33e-09
genusSolobacterium0.1363.53e-098.77e-09
speciesSolobacterium_moorei0.1363.53e-098.77e-09
speciesBacteroides_pectinophilus-0.1363.96e-099.79e-09
genusAggregatibacter0.1345.44e-091.34e-08
speciesParaprevotella_clara-0.1345.83e-091.43e-08
speciesDesulfovibrio_piger-0.1346.11e-091.49e-08
speciesEggerthella_lenta0.1329.71e-092.35e-08
orderLactobacillales0.1311.34e-083.23e-08
genusSutterella-0.1311.4e-083.35e-08
speciesStreptococcus_sanguinis0.1311.43e-083.41e-08
genusWeissella0.131.48e-083.51e-08
speciesStreptococcus_thermophilus-0.131.49e-083.52e-08
speciesBacteroides_xylanisolvens0.131.52e-083.57e-08
speciesHaemophilus_paraphrohaemolyticus0.131.72e-084.02e-08
speciesMegamonas_rupellensis0.1292.02e-084.7e-08
speciesCitrobacter_freundii0.1292.1e-084.86e-08
familyEnterococcaceae0.1292.32e-085.34e-08
genusEnterococcus0.1292.37e-085.43e-08
familyStreptococcaceae0.1282.55e-085.81e-08
speciesPeptostreptococcus_stomatis0.1282.61e-085.92e-08
genusStreptococcus0.1282.74e-086.19e-08
speciesAnaerostipes_hadrus-0.1282.91e-086.54e-08
speciesRuminococcus_champanellensis-0.1283.1e-086.93e-08
genusCampylobacter0.1264.63e-081.03e-07
genusDialister-0.1256.18e-081.37e-07
speciesWeissella_cibaria0.1247.31e-081.61e-07
familyCampylobacteraceae0.1239.61e-082.11e-07
speciesClostridium_bartlettii0.1221.13e-072.47e-07
speciesEscherichia_unclassified0.1221.25e-072.72e-07
speciesClostridium_asparagiforme0.1211.42e-073.07e-07
speciesRuminococcus_sp_5_1_39BFAA-0.1211.48e-073.19e-07
familyClostridiales_noname0.122.12e-074.55e-07
speciesClostridium_sp_ATCC_BAA_4420.1192.44e-075.21e-07
speciesWeissella_confusa0.1192.48e-075.27e-07
speciesAlistipes_sp_AP11-0.1192.51e-075.31e-07
speciesStreptococcus_salivarius0.1192.61e-075.5e-07
familyPeptostreptococcaceae0.1174.23e-078.87e-07
speciesPrevotella_stercorea0.1164.8e-071e-06
speciesEubacterium_dolichum0.1165.09e-071.06e-06
phylumActinobacteria-0.1147.83e-071.61e-06
classActinobacteria-0.1147.83e-071.61e-06
phylumViruses_noname-0.1148.57e-071.75e-06
classViruses_noname-0.1148.57e-071.75e-06
speciesBacteroides_plebeius0.1131.03e-062.1e-06
orderCaudovirales-0.1131.04e-062.11e-06
classEpsilonproteobacteria0.1121.2e-062.41e-06
orderCampylobacterales0.1121.2e-062.41e-06
familyAcidaminococcaceae-0.1111.47e-062.94e-06
familyMyoviridae0.111.72e-063.43e-06
genusMethanosphaera-0.1092.32e-064.58e-06
speciesMethanosphaera_stadtmanae-0.1092.32e-064.58e-06
genusActinobacillus0.1073.58e-067.01e-06
speciesActinobacillus_unclassified0.1073.58e-067.01e-06
genusMyoviridae_noname0.1064.22e-068.23e-06
speciesLactobacillus_ruminis-0.1064.72e-069.17e-06
genusPeptostreptococcaceae_noname0.1054.97e-069.61e-06
speciesStreptococcus_gordonii0.1054.99e-069.61e-06
speciesRuminococcus_bromii-0.1055.2e-069.98e-06
speciesAlistipes_sp_HGB5-0.1011.1e-052.1e-05
genusPhascolarctobacterium-0.1011.19e-052.26e-05
speciesPhascolarctobacterium_succinatutens-0.1011.19e-052.26e-05
speciesErysipelotrichaceae_bacterium_21_3-0.11.52e-052.87e-05
speciesRothia_mucilaginosa0.0972.52e-054.74e-05
speciesLactobacillus_fermentum0.0972.61e-054.89e-05
speciesTuricibacter_unclassified-0.0963.24e-056.04e-05
speciesLactococcus_phage_P680-0.0953.7e-056.88e-05
classBacteroidia0.0953.95e-057.27e-05
orderBacteroidales0.0953.95e-057.27e-05
phylumBacteroidetes0.0953.96e-057.27e-05
genusTuricibacter-0.0954.15e-057.59e-05
speciesKlebsiella_oxytoca0.0944.73e-058.62e-05
speciesMegamonas_hypermegale0.0944.93e-058.95e-05
familyLeuconostocaceae0.0926.34e-050.000115
speciesParabacteroides_unclassified0.0926.65e-050.00012
speciesParabacteroides_merdae-0.0926.77e-050.000121
speciesBacteroides_vulgatus0.0926.87e-050.000123
speciesBacteroides_uniformis-0.0926.89e-050.000123
speciesEubacterium_cylindroides-0.0926.93e-050.000123
speciesEnterococcus_faecalis0.0927.06e-050.000125
speciesStreptococcus_lutetiensis0.0918.6e-050.000151
speciesBifidobacterium_catenulatum-0.099.95e-050.000175
speciesStreptococcus_vestibularis0.090.0001020.000178
speciesDialister_invisus-0.090.0001060.000185
speciesGemella_morbillorum0.0890.0001220.000212
genusBifidobacterium-0.0890.0001230.000213
speciesPropionibacterium_freudenreichii-0.0880.000130.000224
orderBifidobacteriales-0.0860.0002070.000354
familyBifidobacteriaceae-0.0860.0002070.000354
speciesBifidobacterium_animalis-0.0840.000270.00046
genusSiphoviridae_noname-0.0840.0002880.000489
speciesMitsuokella_multacida-0.0840.0002990.000506
genusFaecalibacterium-0.0830.0003340.000561
speciesFaecalibacterium_prausnitzii-0.0830.0003340.000561
speciesMegasphaera_unclassified0.0820.0003690.000618
genusMorganella0.0820.0004110.000683
speciesMorganella_morganii0.0820.0004110.000683
familyMicrococcaceae0.0810.0004220.000699
genusLachnospiraceae_noname0.0810.0004280.000706
genusRothia0.0810.0004450.000732
genusActinomyces0.0810.0004510.000739
speciesBacteroides_nordii0.0810.0004670.000763
familyPorphyromonadaceae-0.080.0004970.000809
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.080.0005360.000869
speciesLactococcus_garvieae0.080.0005780.000934
genusButyricicoccus0.0790.0006490.00104
speciesButyricicoccus_pullicaecorum0.0790.0006490.00104
speciesHaemophilus_sputorum0.0780.0006820.00109
speciesBacteroides_massiliensis0.0780.0007760.00124
genusAcidaminococcaceae_unclassified-0.0760.0009550.00152
speciesEnterococcus_faecium0.0760.001020.00162
familyActinomycetaceae0.0760.001070.00169
speciesTuricibacter_sanguinis-0.0740.001320.00208
speciesBifidobacterium_longum-0.0740.001350.00212
familyLactobacillaceae0.0740.00140.00219
speciesBacteroides_oleiciplenus0.0740.001410.0022
speciesEnterobacteria_phage_HK5440.0730.001520.00236
speciesEubacterium_sp_3_1_310.0730.001530.00237
speciesHoldemania_filiformis-0.0720.001940.00299
speciesProteus_mirabilis0.070.002330.00358
speciesOdoribacter_laneus-0.070.002390.00366
speciesLactococcus_phage_936_sensu_lato-0.070.002570.00393
speciesBacteroides_salyersiae0.0690.002750.00419
speciesErysipelotrichaceae_bacterium_2_2_44A0.0690.002940.00446
genusButyricimonas-0.0690.002980.00449
speciesButyricimonas_synergistica-0.0690.002980.00449
speciesBifidobacterium_angulatum-0.0680.003060.0046
genusGordonibacter-0.0680.003160.00472
speciesGordonibacter_pamelaeae-0.0680.003160.00472
genusLactobacillus0.0680.003260.00485
speciesLactococcus_phage_phi7-0.0680.003450.00512
speciesBacteroides_cellulosilyticus-0.0670.003520.00521
speciesBifidobacterium_bifidum-0.0660.004340.0064
speciesRoseburia_unclassified-0.0660.004590.00675
speciesBacteroides_salanitronis-0.0650.004720.00692
speciesLeuconostoc_lactis0.0650.005030.00735
speciesHoldemania_unclassified-0.0650.00520.00758
familyVeillonellaceae0.0630.006420.00932
speciesBifidobacterium_dentium0.0630.006590.00954
familyClostridiales_Family_XI_Incertae_Sedis0.0620.007070.0102
speciesDialister_succinatiphilus-0.0620.007110.0102
genusErysipelotrichaceae_noname-0.0620.00740.0106
speciesParabacteroides_sp_D13-0.0610.007830.0112
speciesAcidaminococcus_unclassified-0.0610.008510.0121
speciesBacteroides_sp_3_1_190.0610.008730.0124
speciesLactobacillus_crispatus0.060.009480.0134
genusPrevotella0.060.00960.0136
speciesRoseburia_intestinalis-0.060.009710.0137
speciesLactobacillus_sanfranciscensis0.060.009820.0138
speciesKlebsiella_sp_MS_92_30.0590.01130.0158
genusPyramidobacter0.0580.01170.0162
speciesPyramidobacter_piscolens0.0580.01170.0162
speciesCollinsella_intestinalis0.0580.01170.0162
orderActinomycetales0.0580.01240.0172
speciesLactobacillus_oris0.0570.0130.0179
speciesBacteroides_coprocola0.0570.01320.0182
speciesPrevotella_bivia0.0570.01370.0188
speciesParabacteroides_distasonis0.0550.01750.0239
speciesAcidaminococcus_intestini0.0550.01780.0243
speciesSutterella_parvirubra0.0540.01890.0257
speciesPrevotella_copri0.0540.01920.026
speciesErysipelotrichaceae_bacterium_3_1_530.0530.0210.0284
speciesOscillibacter_sp_KLE_1728-0.0530.02260.0305
orderViruses_noname-0.0520.02460.0331
speciesLactobacillus_gasseri0.0510.02610.035
speciesBifidobacterium_breve0.0510.02670.0357
speciesBacteroides_intestinalis0.0510.02890.0385
speciesLactobacillus_acidophilus-0.050.02970.0395
phylumSynergistetes0.0490.03540.0465
classSynergistia0.0490.03540.0465
orderSynergistales0.0490.03540.0465
familySynergistaceae0.0490.03540.0465
speciesStreptococcus_mutans0.0480.03620.0475
familyPrevotellaceae-0.0470.04230.055
classErysipelotrichia-0.0470.04240.055
orderErysipelotrichales-0.0470.04240.055
familyErysipelotrichaceae-0.0470.04240.055
speciesEubacterium_limosum0.0470.04330.056
speciesStreptococcus_parasanguinis0.0450.04950.0638
speciesLachnospiraceae_bacterium_1_1_57FAA0.0440.05440.07
speciesPeptostreptococcaceae_noname_unclassified-0.0440.05660.0726
speciesBacteroides_barnesiae-0.0430.060.0767
familyPropionibacteriaceae-0.0430.06020.0768
familyLachnospiraceae-0.0430.06130.078
speciesCollinsella_tanakaei0.0430.06160.0782
speciesMegamonas_funiformis0.0430.06540.0828
speciesLactococcus_lactis-0.0420.06680.0843
genusProteus0.0420.06920.0871
genusHoldemania-0.0420.06980.0876
orderAeromonadales0.040.08760.11
genusPropionibacterium-0.0390.09450.118
speciesLactobacillus_vaginalis0.0380.09680.121
speciesParvimonas_unclassified0.0380.09830.122
genusParvimonas0.0380.09860.122
genusPorphyromonas-0.0370.1050.13
classDeltaproteobacteria-0.0370.1090.134
orderDesulfovibrionales-0.0370.1090.134
familyDesulfovibrionaceae-0.0370.1090.134
speciesLactobacillus_plantarum0.0370.110.134
speciesLactococcus_phage_jm2-0.0370.110.134
speciesBacteroides_finegoldii0.0370.110.134
speciesOdoribacter_unclassified-0.0370.1120.136
speciesBlautia_hydrogenotrophica-0.0370.1120.136
speciesAnaerotruncus_colihominis0.0340.1460.176
speciesOscillibacter_sp_KLE_1745-0.0330.1510.182
genusParabacteroides0.0320.1620.195
genusClostridiaceae_noname0.0320.1720.206
speciesClostridiaceae_bacterium_JC1180.0320.1720.206
genusPeptoniphilus0.0310.1760.21
speciesBacteroides_sp_1_1_6-0.0310.1810.215
speciesPorphyromonas_asaccharolytica-0.030.1970.234
genusAnaerostipes-0.0280.2280.27
familyViruses_noname0.0280.2290.27
genusViruses_noname0.0280.2290.27
speciesLactobacillus_casei_paracasei-0.0260.2680.315
speciesRuminococcus_sp_JC3040.0260.2690.315
genusLeuconostoc0.0250.2780.325
genusRoseburia-0.0240.30.35
speciesLachnospiraceae_bacterium_5_1_63FAA0.0240.3060.356
speciesBacteroides_coprophilus-0.0230.3140.364
speciesCollinsella_unclassified-0.0230.3270.378
speciesBilophila_wadsworthia0.0220.3360.388
speciesMegasphaera_elsdenii0.0220.3480.401
speciesCoriobacteriaceae_bacterium_phI0.0220.3490.401
genusAcidaminococcus-0.0210.3620.414
speciesRoseburia_inulinivorans-0.0210.3620.414
genusLactococcus-0.0210.3640.415
speciesParabacteroides_goldsteinii0.020.3890.442
speciesLactobacillus_delbrueckii-0.0190.4060.461
speciesBacteroides_fluxus0.0190.4080.462
genusCoriobacteriaceae_noname0.0190.410.463
speciesLactococcus_phage_bIL67-0.0180.4250.479
speciesLactobacillus_amylovorus0.0180.4280.481
speciesParabacteroides_sp_20_3-0.0180.4420.496
genusSutterellaceae_unclassified-0.0180.4460.499
speciesAlistipes_unclassified-0.0180.4490.501
speciesCoprobacillus_sp_29_10.0170.4520.503
familySuccinivibrionaceae-0.0170.4720.524
genusTunalikevirus0.0160.4770.529
speciesBacteroides_faecis0.0160.4810.529
genusBurkholderiales_noname0.0160.4820.529
speciesBurkholderiales_bacterium_1_1_470.0160.4820.529
familySutterellaceae-0.0160.4830.529
speciesBacteroides_sp_4_3_47FAA-0.0160.4830.529
familyBurkholderiales_noname0.0160.4870.532
speciesErysipelotrichaceae_bacterium_6_1_45-0.0160.5010.546
classNegativicutes0.0150.5190.563
orderSelenomonadales0.0150.5190.563
speciesDorea_unclassified-0.0140.5330.575
genusSuccinatimonas-0.0140.5340.575
speciesSuccinatimonas_hippei-0.0140.5340.575
genusLambdalikevirus-0.0140.5450.586
speciesBacteroides_eggerthii-0.0140.5510.591
speciesBacteroides_clarus-0.0140.5520.591
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0130.5650.603
familyPodoviridae0.0130.5680.605
genusBilophila0.0130.5690.605
speciesLactobacillus_rhamnosus0.0120.5930.629
speciesBilophila_unclassified0.0120.6050.64
speciesClostridium_sp_KLE_17550.0110.6190.653
speciesAcidaminococcus_fermentans-0.0110.620.653
genusStaphylococcus-0.0110.6250.657
speciesSlackia_piriformis-0.0110.630.661
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0110.6430.673
speciesParabacteroides_johnsonii0.010.6540.683
genusParasutterella0.010.660.686
speciesParasutterella_excrementihominis0.010.660.686
speciesEggerthella_sp_1_3_56FAA-0.010.6680.693
speciesRuminococcus_torques0.0090.6860.71
speciesBacteroides_dorei-0.0090.6930.716
speciesBacteroides_caccae-0.0090.7060.728
speciesLactobacillus_reuteri-0.0090.7080.728
genusSlackia0.0070.7530.773
orderBurkholderiales-0.0070.7570.775
speciesBacteroides_sp_2_1_22-0.0070.7670.784
speciesPorphyromonas_uenonis0.0060.790.805
speciesCoprobacillus_sp_D60.0060.8050.819
speciesPeptostreptococcus_anaerobius0.0050.8420.854
speciesStreptococcus_phage_Sfi21-0.0050.8430.854
speciesKlebsiella_phage_KP360.0040.8470.856
familyStaphylococcaceae-0.0040.8770.884
speciesHoldemania_sp_AP2-0.0030.8930.899
speciesClostridium_spiroforme-0.0030.9060.91
classBetaproteobacteria0.0010.9540.956
orderPseudomonadales0.0010.9560.956
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.003838716439280.0007793989653791.7228088882e-05389013.0673
Crohns diseaseSpain17660.003265065554260.0001202737784180.00019286287070124828.2527
ObesityDenmark1691230.0003000694756671.44532552199e-050.126240063973842127.6906
Type II diabetesDenmark752772.1168385763e-050.0001834798484430.4203284469851866361.1761
Type II diabetesSweden53920.0001424417254543.14391629501e-050.7410967395372259076.4985
Type II diabetesChina1831850.002973487231940.001977571824730.7666773345432603886.0504
Colorectal cancerAustria64350.0007290613679440.0003862401396690.7704210635812452682.9815
Ulcerative colitisSpain78660.0002484320549460.0001202737784180.7865605800192544183.9249
Rheumatoid arthritisChina127980.002062314992410.002755776991280.8901780547782744791.5297
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382