MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-03-10 10:56:35 PST
Job id & description: 1765, CA
Query type: protein
Count queries & homologs: 1, 28
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|P43166|CAH7_HUMAN3680490Lack 5'-endK01674COG3338ProteobacteriaKlebsiella95.4588.3536.72
sp|P43166|CAH7_HUMAN3743670CompleteK01674COG3338ProteobacteriaEnterobacter95.4589.4337.45
sp|P43166|CAH7_HUMAN3722090CompleteK01674COG3338Proteobacteriaunknown95.4589.0737.45
sp|P43166|CAH7_HUMAN3517803CompleteK01674COG3338ProteobacteriaCitrobacter95.8385.6635.52
sp|P43166|CAH7_HUMAN3737346CompleteK01674COG3338ProteobacteriaKlebsiella95.4589.4337.11
sp|P43166|CAH7_HUMAN3741171CompleteK01674COG3338Proteobacteriaunknown95.4589.4336.68
sp|P43166|CAH7_HUMAN3730205CompleteK01674COG3338ProteobacteriaKlebsiella95.4589.4337.5
sp|P43166|CAH7_HUMAN3801246CompleteK01674COG3338ProteobacteriaEnterobacter95.4589.7132.43
sp|P43166|CAH7_HUMAN3458707CompleteK01674COG3338ProteobacteriaEnterobacter95.4584.2934.62
sp|P43166|CAH7_HUMAN3798349CompleteK01674COG3338ProteobacteriaEnterobacter95.4589.7132.03
sp|P43166|CAH7_HUMAN4498160Lack 5'-endK01674COG3338Proteobacteriaunknown87.8893.3337.02
sp|P43166|CAH7_HUMAN3473466CompleteK01674COG3338FirmicutesStreptococcus96.2185.031.27
sp|P43166|CAH7_HUMAN3448209Lack 5'-endK01674COG3338FirmicutesStreptococcus95.8384.2931.01
sp|P43166|CAH7_HUMAN3687548CompleteK01674COG3338ProteobacteriaCitrobacter96.9790.7631.14
sp|P43166|CAH7_HUMAN3472683CompleteK01674COG3338FirmicutesStreptococcus95.8384.6230.23
sp|P43166|CAH7_HUMAN3476199CompleteK01674COG3338FirmicutesStreptococcus95.8384.6230.23
sp|P43166|CAH7_HUMAN3481403CompleteK01674COG3338FirmicutesStreptococcus95.8384.6230.38
sp|P43166|CAH7_HUMAN3101703CompleteK01674COG3338ProteobacteriaHaemophilus96.5978.830.5
sp|P43166|CAH7_HUMAN3665942CompleteK01674COG3338ProteobacteriaHaemophilus95.8388.430.35
sp|P43166|CAH7_HUMAN3555340CompleteK01674COG3338FirmicutesStreptococcus95.8385.9431.4
sp|P43166|CAH7_HUMAN4476622CompleteK01674COG3338unknownunknown89.0290.9533.47
sp|P43166|CAH7_HUMAN3665655CompleteK01674COG3338ProteobacteriaHaemophilus95.8388.430.35
sp|P43166|CAH7_HUMAN4515526CompleteK01674COG3338FirmicutesWeissella89.0291.3932.63
sp|P43166|CAH7_HUMAN4447701Lack 5'-endK01674COG3338unknownunknown86.7495.7532.34
sp|P43166|CAH7_HUMAN3868556CompleteK01674COG3338FirmicutesEnterococcus96.5992.0530.0
sp|P43166|CAH7_HUMAN5514461Lack 5'-endK01674COG3338ProteobacteriaHaemophilus76.1496.5130.58
sp|P43166|CAH7_HUMAN4925252Lack 3'-endK01674COG3338unknownunknown71.9787.0532.99
sp|P43166|CAH7_HUMAN5547076Lack 3'-endK01674COG3338unknownunknown72.3591.2830.26
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyStreptococcaceae0.7570.00.0
genusStreptococcus0.7570.00.0
orderLactobacillales0.721.51e-2982.38e-296
speciesStreptococcus_salivarius0.7192.76e-2973.26e-295
classBacilli0.7186.53e-2966.16e-294
speciesStreptococcus_parasanguinis0.5752.59e-1652.04e-163
genusVeillonella0.5473.2e-1462.16e-144
speciesHaemophilus_parainfluenzae0.5311.24e-1367.32e-135
orderPasteurellales0.536.08e-1362.87e-134
familyPasteurellaceae0.536.08e-1362.87e-134
genusHaemophilus0.539.23e-1363.96e-134
speciesVeillonella_unclassified0.5147.69e-1273.02e-125
speciesVeillonella_parvula0.5095.13e-1241.86e-122
speciesStreptococcus_vestibularis0.4568.51e-972.87e-95
speciesVeillonella_dispar0.4552.13e-966.7e-95
speciesVeillonella_atypica0.451.14e-933.36e-92
speciesStreptococcus_anginosus0.4465.83e-921.62e-90
speciesStreptococcus_gordonii0.441.9e-894.98e-88
speciesStreptococcus_sanguinis0.4354.97e-871.23e-85
speciesRothia_mucilaginosa0.4221.73e-814.08e-80
genusRothia0.4213.89e-818.74e-80
familyMicrococcaceae0.4214.41e-819.46e-80
speciesStreptococcus_mitis_oralis_pneumoniae0.425.83e-811.2e-79
orderActinomycetales0.4051.22e-742.4e-73
speciesStreptococcus_australis0.3862.26e-674.27e-66
familyBacillales_noname0.3795.3e-659.27e-64
genusGemella0.3795.3e-659.27e-64
classGammaproteobacteria0.3752.46e-634.15e-62
familyLactobacillaceae0.3745.32e-638.66e-62
genusLactobacillus0.3715e-627.87e-61
orderBacillales0.377.07e-621.08e-60
speciesBifidobacterium_dentium0.3683.24e-614.78e-60
genusActinobacillus0.3684.11e-615.71e-60
speciesActinobacillus_unclassified0.3684.11e-615.71e-60
genusEnterobacter0.3632.83e-593.82e-58
familyOscillospiraceae-0.3624.06e-595.18e-58
genusOscillibacter-0.3624.06e-595.18e-58
speciesOscillibacter_unclassified-0.3534.58e-565.69e-55
speciesEnterobacter_cloacae0.3535.19e-566.28e-55
speciesMegasphaera_micronuciformis0.3521.22e-551.44e-54
speciesStreptococcus_mutans0.3353.97e-504.57e-49
genusActinomyces0.3275.92e-486.65e-47
familyActinomycetaceae0.3252.12e-472.33e-46
speciesLachnospiraceae_bacterium_7_1_58FAA-0.3222.69e-462.89e-45
genusKlebsiella0.3214.47e-464.69e-45
familyPeptostreptococcaceae0.3184.07e-454.18e-44
familyPorphyromonadaceae-0.3143.77e-443.79e-43
speciesLactobacillus_salivarius0.315.25e-435.16e-42
genusPeptostreptococcaceae_noname0.3069.53e-429.18e-41
genusAggregatibacter0.3051.4e-411.32e-40
familyRikenellaceae-0.3021.27e-401.15e-39
genusAlistipes-0.3021.27e-401.15e-39
speciesCampylobacter_concisus0.2852.92e-362.6e-35
speciesFusobacterium_nucleatum0.284.68e-354.09e-34
speciesLactobacillus_fermentum0.2798.32e-357.14e-34
speciesClostridium_perfringens0.2773.39e-342.86e-33
speciesKlebsiella_pneumoniae0.2732.32e-331.92e-32
genusParabacteroides-0.2723.53e-332.87e-32
genusCitrobacter0.2724.52e-333.62e-32
speciesCitrobacter_unclassified0.2716.51e-335.12e-32
phylumBacteroidetes-0.2683.28e-322.48e-31
classBacteroidia-0.2683.31e-322.48e-31
orderBacteroidales-0.2683.31e-322.48e-31
speciesClostridium_bartlettii0.2683.7e-322.73e-31
speciesKlebsiella_oxytoca0.2675.85e-324.25e-31
speciesAggregatibacter_segnis0.2661.49e-311.07e-30
speciesBacteroides_uniformis-0.2651.92e-311.35e-30
genusOdoribacter-0.2644.43e-313.07e-30
speciesCitrobacter_freundii0.2627.84e-315.36e-30
speciesHaemophilus_sputorum0.2629.12e-316.15e-30
genusAnaerotruncus-0.2621.15e-307.65e-30
speciesStreptococcus_thermophilus0.2571.16e-297.6e-29
speciesOdoribacter_splanchnicus-0.2553.03e-291.96e-28
familyEnterococcaceae0.2554.94e-293.15e-28
genusEnterococcus0.2512.47e-281.55e-27
familyVeillonellaceae0.2513.4e-282.11e-27
speciesAnaerotruncus_unclassified-0.2513.71e-282.27e-27
orderEnterobacteriales0.2497.55e-284.51e-27
familyEnterobacteriaceae0.2497.55e-284.51e-27
phylumFusobacteria0.2481.36e-277.83e-27
classFusobacteriia0.2481.36e-277.83e-27
orderFusobacteriales0.2481.36e-277.83e-27
genusFusobacterium0.2462.99e-271.7e-26
familyFusobacteriaceae0.2463.28e-271.84e-26
genusSubdoligranulum-0.2431.45e-268.05e-26
speciesAlistipes_shahii-0.2414.53e-262.49e-25
genusSolobacterium0.2399.84e-265.28e-25
speciesSolobacterium_moorei0.2399.84e-265.28e-25
speciesSubdoligranulum_unclassified-0.2381.92e-251.02e-24
speciesLactobacillus_gasseri0.2372.92e-251.53e-24
speciesPrevotella_buccae0.2364.7e-252.44e-24
speciesAlistipes_indistinctus-0.2364.9e-252.51e-24
familyLeuconostocaceae0.2331.55e-247.87e-24
genusPseudoflavonifractor-0.2299.62e-244.78e-23
speciesPseudoflavonifractor_capillosus-0.2299.62e-244.78e-23
speciesLactobacillus_mucosae0.2291.12e-235.51e-23
classDeltaproteobacteria-0.2291.16e-235.53e-23
orderDesulfovibrionales-0.2291.16e-235.53e-23
familyDesulfovibrionaceae-0.2291.16e-235.53e-23
familyBacteroidales_noname-0.225.69e-222.63e-21
genusBacteroidales_noname-0.225.69e-222.63e-21
speciesBacteroidales_bacterium_ph8-0.225.69e-222.63e-21
genusWeissella0.2121.56e-207.15e-20
speciesRuminococcus_gnavus0.214.83e-202.19e-19
speciesLactobacillus_vaginalis0.2096.88e-203.09e-19
speciesAlistipes_senegalensis-0.2097.91e-203.52e-19
speciesWeissella_confusa0.2081.14e-195.03e-19
speciesEnterococcus_faecalis0.2061.92e-198.39e-19
speciesAlistipes_putredinis-0.2062.41e-191.04e-18
genusDesulfovibrio-0.2036.57e-192.82e-18
speciesEubacterium_siraeum-0.2011.63e-186.93e-18
speciesHaemophilus_paraphrohaemolyticus0.1993.99e-181.68e-17
phylumFirmicutes0.1986.09e-182.54e-17
phylumProteobacteria0.1961.09e-174.51e-17
speciesLachnospiraceae_bacterium_5_1_63FAA0.1961.1e-174.51e-17
speciesLactobacillus_delbrueckii0.1961.17e-174.72e-17
speciesCoprobacillus_unclassified0.1961.17e-174.72e-17
speciesLactobacillus_rhamnosus0.1961.19e-174.76e-17
genusPeptostreptococcus0.1925.59e-172.22e-16
speciesWeissella_cibaria0.1926.39e-172.51e-16
speciesAlistipes_onderdonkii-0.1865.48e-162.14e-15
genusRuminococcaceae_noname-0.1865.8e-162.23e-15
speciesRuminococcaceae_bacterium_D16-0.1865.8e-162.23e-15
familyCampylobacteraceae0.1831.53e-155.82e-15
genusCampylobacter0.1822.04e-157.7e-15
classEpsilonproteobacteria0.1822.25e-158.36e-15
orderCampylobacterales0.1822.25e-158.36e-15
genusBlautia0.1813.4e-151.25e-14
speciesEnterococcus_faecium0.1813.69e-151.35e-14
speciesLactobacillus_oris0.1795.42e-151.97e-14
genusBilophila-0.1796.09e-152.19e-14
speciesFusobacterium_mortiferum0.1789.37e-153.35e-14
speciesBilophila_unclassified-0.1781.01e-143.58e-14
speciesDesulfovibrio_desulfuricans-0.1761.63e-145.74e-14
genusMegasphaera0.1761.73e-146.05e-14
genusEscherichia0.1752.24e-147.77e-14
speciesKlebsiella_unclassified0.1752.36e-148.13e-14
familyLachnospiraceae0.1752.62e-148.96e-14
speciesEscherichia_unclassified0.1743.98e-141.35e-13
speciesClostridium_nexile0.1734.31e-141.45e-13
speciesClostridium_ramosum0.1734.43e-141.48e-13
speciesParabacteroides_merdae-0.1735.01e-141.67e-13
speciesAlistipes_finegoldii-0.1735.39e-141.78e-13
speciesLactobacillus_casei_paracasei0.1727.77e-142.55e-13
genusCoprobacillus0.1718.4e-142.73e-13
genusOxalobacter-0.1719.16e-142.84e-13
speciesOxalobacter_formigenes-0.1719.16e-142.84e-13
phylumVerrucomicrobia-0.1719.21e-142.84e-13
classVerrucomicrobiae-0.1719.21e-142.84e-13
orderVerrucomicrobiales-0.1719.21e-142.84e-13
familyVerrucomicrobiaceae-0.1719.21e-142.84e-13
genusAkkermansia-0.1719.21e-142.84e-13
speciesAkkermansia_muciniphila-0.1719.21e-142.84e-13
familyOxalobacteraceae-0.171.55e-134.75e-13
familyBacteroidaceae-0.1682.74e-138.29e-13
genusBacteroides-0.1682.74e-138.29e-13
genusLeuconostoc0.1682.83e-138.51e-13
speciesLactococcus_garvieae0.1656.29e-131.88e-12
speciesEnterobacter_aerogenes0.1656.71e-131.99e-12
orderBifidobacteriales0.1657.22e-132.12e-12
familyBifidobacteriaceae0.1657.22e-132.12e-12
genusBarnesiella-0.1621.62e-124.69e-12
speciesBarnesiella_intestinihominis-0.1621.62e-124.69e-12
genusBifidobacterium0.1622.12e-126.1e-12
classNegativicutes0.163.73e-121.06e-11
orderSelenomonadales0.163.73e-121.06e-11
speciesBilophila_wadsworthia-0.1578.34e-122.36e-11
genusLactococcus0.1551.43e-114.02e-11
phylumActinobacteria0.1551.48e-114.11e-11
classActinobacteria0.1551.48e-114.11e-11
speciesLactobacillus_crispatus0.1532.55e-117.04e-11
speciesTuricibacter_sanguinis0.1514.88e-111.34e-10
speciesClostridium_leptum-0.1515.13e-111.4e-10
speciesStreptococcus_infantarius0.157.13e-111.93e-10
speciesEggerthella_unclassified0.1498.81e-112.38e-10
speciesOscillibacter_sp_KLE_1745-0.1491.04e-102.79e-10
genusEggerthella0.1481.16e-103.09e-10
speciesEscherichia_coli0.1481.35e-103.58e-10
speciesBifidobacterium_longum0.1471.59e-104.19e-10
speciesAlistipes_sp_AP11-0.1462.17e-105.69e-10
speciesPeptostreptococcus_stomatis0.1453.25e-108.48e-10
genusCoprobacter-0.1426.37e-101.64e-09
speciesCoprobacter_fastidiosus-0.1426.37e-101.64e-09
speciesBifidobacterium_pseudocatenulatum0.1419e-102.31e-09
genusAnaerostipes0.1419.13e-102.33e-09
speciesLachnospiraceae_bacterium_3_1_46FAA-0.141.28e-093.25e-09
orderBurkholderiales-0.1373.02e-097.62e-09
speciesMegamonas_unclassified0.1337.45e-091.87e-08
genusMegamonas0.1337.74e-091.93e-08
speciesLactobacillus_plantarum0.1338.64e-092.15e-08
speciesGemella_morbillorum0.1329.5e-092.35e-08
speciesRuminococcus_sp_5_1_39BFAA0.1329.6e-092.36e-08
speciesDesulfovibrio_piger-0.1311.45e-083.55e-08
genusButyrivibrio-0.1273.7e-088.98e-08
speciesLactococcus_lactis0.1273.71e-088.98e-08
speciesRuminococcus_obeum0.1273.91e-089.42e-08
classBetaproteobacteria-0.1264.57e-081.09e-07
speciesAnaerostipes_hadrus0.1247.65e-081.82e-07
speciesBacteroides_cellulosilyticus-0.1239.6e-082.28e-07
speciesStreptococcus_lutetiensis0.1221.27e-073e-07
speciesDorea_formicigenerans0.1221.31e-073.08e-07
familySutterellaceae-0.1211.57e-073.67e-07
classMethanobacteria-0.121.76e-074.05e-07
orderMethanobacteriales-0.121.76e-074.05e-07
familyMethanobacteriaceae-0.121.76e-074.05e-07
familyMyoviridae0.121.79e-074.1e-07
speciesLeuconostoc_lactis0.121.91e-074.36e-07
speciesHoldemania_filiformis-0.122.07e-074.7e-07
genusTuricibacter0.1192.36e-075.33e-07
speciesMethanobrevibacter_smithii-0.1192.51e-075.64e-07
speciesPeptostreptococcaceae_noname_unclassified0.1183.3e-077.38e-07
phylumEuryarchaeota-0.1173.55e-077.9e-07
genusMethanobrevibacter-0.1156.04e-071.34e-06
familyAcidaminococcaceae-0.1121.09e-062.4e-06
genusPantoea0.1121.19e-062.6e-06
speciesPantoea_unclassified0.1121.19e-062.6e-06
familyClostridiales_noname-0.1092.45e-065.33e-06
speciesBifidobacterium_breve0.1082.97e-066.43e-06
speciesBacteroides_vulgatus-0.1073.39e-067.31e-06
speciesBifidobacterium_animalis0.1073.66e-067.85e-06
genusFaecalibacterium0.1064.05e-068.61e-06
speciesFaecalibacterium_prausnitzii0.1064.05e-068.61e-06
speciesTuricibacter_unclassified0.1046.31e-061.34e-05
speciesOscillibacter_sp_KLE_1728-0.1038.04e-061.69e-05
speciesBacteroides_plebeius0.1011.27e-052.66e-05
genusProteus0.11.59e-053.32e-05
familyClostridiales_Family_XI_Incertae_Sedis0.0991.73e-053.6e-05
speciesParaprevotella_xylaniphila-0.0982.1e-054.35e-05
genusLachnospiraceae_noname0.0972.5e-055.15e-05
speciesMethanobrevibacter_unclassified-0.0972.69e-055.52e-05
speciesKlebsiella_sp_MS_92_30.0972.87e-055.86e-05
speciesEggerthella_lenta0.0963.36e-056.84e-05
speciesMitsuokella_unclassified-0.0953.62e-057.33e-05
speciesLachnospiraceae_bacterium_2_1_58FAA0.0953.7e-057.46e-05
speciesProteus_mirabilis0.0953.75e-057.53e-05
speciesAnaerotruncus_colihominis-0.0944.4e-058.8e-05
genusHoldemania-0.0944.83e-059.62e-05
speciesFusobacterium_varium0.0935.14e-050.000102
genusMitsuokella-0.0935.66e-050.000112
speciesSutterella_wadsworthensis-0.0926.38e-050.000125
speciesParvimonas_unclassified0.0926.53e-050.000128
speciesBlautia_producta0.0926.6e-050.000129
genusParvimonas0.0926.64e-050.000129
genusRuminococcus0.0890.000110.000213
speciesButyrivibrio_unclassified-0.0890.0001160.000223
genusDorea0.0890.0001270.000244
speciesMegamonas_rupellensis0.0880.000130.000248
genusRoseburia0.0880.0001320.000251
genusMorganella0.0880.0001410.000266
speciesMorganella_morganii0.0880.0001410.000266
speciesBacteroides_coprocola0.0870.0001730.000324
speciesRoseburia_inulinivorans0.0870.0001730.000324
speciesAlistipes_sp_HGB5-0.0850.0002170.000405
speciesRuminococcus_champanellensis-0.0850.000230.000427
classClostridia0.0850.0002340.000431
orderClostridiales0.0850.0002340.000431
genusSutterella-0.0840.0002590.000476
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0830.0003350.000613
speciesBacteroides_dorei-0.0820.0003580.000652
familyStaphylococcaceae0.0820.0003690.00067
genusPhascolarctobacterium-0.0820.0003850.000694
speciesPhascolarctobacterium_succinatutens-0.0820.0003850.000694
genusAcidaminococcaceae_unclassified-0.0810.0004280.000768
speciesDialister_invisus0.0810.0004590.000821
speciesRoseburia_unclassified-0.0790.0005950.00106
speciesRoseburia_hominis-0.0790.0006710.00119
speciesFusobacterium_ulcerans0.0780.000680.0012
speciesParaprevotella_unclassified-0.0780.0007670.00135
speciesEubacterium_hallii0.0770.0008360.00146
speciesLactobacillus_reuteri0.0770.0008370.00146
speciesRuminococcus_sp_JC3040.0770.0008460.00147
genusParasutterella-0.0770.0009170.00159
speciesParasutterella_excrementihominis-0.0770.0009170.00159
speciesMegamonas_hypermegale0.0760.0009580.00165
speciesParabacteroides_distasonis-0.0760.0009880.0017
genusParaprevotella-0.0760.001040.00178
genusButyricimonas-0.0760.001080.00183
speciesButyricimonas_synergistica-0.0760.001080.00183
genusStaphylococcus0.0750.001180.002
speciesBacteroides_caccae-0.0750.001210.00204
speciesEubacterium_eligens0.0750.001240.00208
speciesLachnospiraceae_bacterium_6_1_63FAA0.0750.001260.00211
genusDialister0.0740.001390.00232
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0740.001440.00239
speciesButyrivibrio_crossotus-0.0730.001690.0028
genusPropionibacterium0.0720.001830.00302
speciesEggerthella_sp_1_3_56FAA0.0710.002010.00331
genusFlavonifractor-0.070.002370.00387
speciesFlavonifractor_plautii-0.070.002370.00387
speciesClostridium_symbiosum0.070.002470.00402
speciesParaprevotella_clara-0.070.002490.00404
genusMyoviridae_noname0.0690.002750.00445
speciesC2likevirus_unclassified-0.0690.002780.00448
speciesParabacteroides_unclassified-0.0690.002820.00453
speciesStreptococcus_phage_Sfi210.0680.003240.00518
familyBurkholderiales_noname-0.0670.003560.00568
genusC2likevirus-0.0670.003750.00596
speciesRoseburia_intestinalis0.0660.004090.00648
speciesPrevotella_stercorea0.0660.004340.00685
speciesClostridium_asparagiforme-0.0660.004570.00719
speciesPropionibacterium_freudenreichii0.0650.005040.0079
genusBurkholderiales_noname-0.0640.005410.00843
speciesBurkholderiales_bacterium_1_1_47-0.0640.005410.00843
speciesLactobacillus_sanfranciscensis0.0630.006020.00935
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0630.006440.00997
speciesLachnospiraceae_bacterium_5_1_57FAA0.0620.006940.0107
speciesBacteroides_ovatus-0.0610.008210.0126
orderPseudomonadales0.0590.0110.0169
genusTunalikevirus0.0580.01180.018
speciesErysipelotrichaceae_bacterium_2_2_44A0.0580.01190.0181
genusClostridium0.0580.01270.0193
speciesEnterobacteria_phage_HK5440.0570.01330.0201
classErysipelotrichia0.0570.01350.0202
orderErysipelotrichales0.0570.01350.0202
familyErysipelotrichaceae0.0570.01350.0202
speciesMegamonas_funiformis0.0560.01540.023
familyEubacteriaceae0.0560.01550.0231
genusPyramidobacter0.0560.01560.0231
speciesPyramidobacter_piscolens0.0560.01560.0231
genusEubacterium0.0560.01580.0233
speciesBifidobacterium_bifidum0.0560.0160.0235
orderCoriobacteriales0.0560.01610.0235
familyCoriobacteriaceae0.0560.01610.0235
familyPropionibacteriaceae0.0560.01640.0239
speciesBacteroides_xylanisolvens-0.0550.01720.025
genusClostridiaceae_noname-0.0550.01780.0257
speciesClostridiaceae_bacterium_JC118-0.0550.01780.0257
speciesBacteroides_fragilis0.0540.01860.0268
familyClostridiaceae0.0540.01880.027
speciesLachnospiraceae_bacterium_1_1_57FAA0.0540.01970.0282
speciesEubacterium_ventriosum-0.0540.020.0285
speciesKlebsiella_phage_KP360.0530.02150.0306
speciesBifidobacterium_catenulatum0.0530.02160.0306
speciesCoprococcus_sp_ART55_1-0.0520.02320.0328
speciesBacteroides_clarus-0.0520.0250.0352
speciesAcidaminococcus_unclassified-0.0510.02730.0384
genusLambdalikevirus0.0510.02840.0398
genusAcidaminococcus-0.050.03110.0434
speciesBacteroides_thetaiotaomicron-0.0490.03470.0483
speciesParabacteroides_johnsonii-0.0490.0350.0486
speciesClostridium_sp_L2_50-0.0480.03730.0516
speciesLactobacillus_acidophilus0.0480.03760.0519
speciesPorphyromonas_asaccharolytica-0.0480.03820.0526
phylumSynergistetes0.0480.03930.0535
classSynergistia0.0480.03930.0535
orderSynergistales0.0480.03930.0535
familySynergistaceae0.0480.03930.0535
speciesErysipelotrichaceae_bacterium_3_1_530.0470.04360.0591
speciesParabacteroides_goldsteinii-0.0460.04710.0637
speciesPrevotella_copri0.0460.04860.0655
speciesBacteroides_sp_2_1_22-0.0450.04990.0671
speciesBacteroides_nordii-0.0440.05830.0782
speciesSutterella_parvirubra0.0430.06080.0813
speciesStreptococcus_pasteurianus0.0430.0630.084
speciesLachnospiraceae_bacterium_1_4_56FAA0.0430.06550.0871
speciesCollinsella_unclassified-0.0420.06720.0891
familySuccinivibrionaceae-0.0420.06910.0914
speciesParabacteroides_sp_D13-0.0420.07070.0932
genusErysipelotrichaceae_noname0.0420.07210.0948
speciesLactobacillus_amylovorus0.0410.07840.103
genusMethanosphaera-0.040.08010.104
speciesMethanosphaera_stadtmanae-0.040.08010.104
genusSuccinatimonas-0.040.08020.104
speciesSuccinatimonas_hippei-0.040.08020.104
speciesDorea_unclassified-0.040.08240.107
speciesOdoribacter_laneus-0.040.0830.107
speciesCoprobacillus_sp_29_1-0.040.08760.112
genusPorphyromonas-0.0390.08770.112
speciesBacteroides_coprophilus0.0390.0880.113
speciesMitsuokella_multacida-0.0380.10.128
speciesRuminococcus_torques0.0380.1010.128
speciesBacteroides_salanitronis-0.0380.1030.131
speciesErysipelotrichaceae_bacterium_21_3-0.0380.1040.132
speciesEubacterium_sp_3_1_31-0.0380.1050.133
speciesBacteroides_stercoris0.0370.1120.141
genusPrevotella0.0360.1180.148
genusPeptoniphilus0.0360.1220.153
speciesClostridium_sp_KLE_1755-0.0360.1240.155
speciesOdoribacter_unclassified-0.0350.1250.156
speciesAnaerostipes_unclassified0.0350.1270.158
speciesSlackia_piriformis-0.0350.130.161
speciesCollinsella_intestinalis0.0340.1430.177
speciesPeptostreptococcus_anaerobius0.0340.1440.177
speciesEubacterium_cylindroides-0.0340.1460.179
speciesMegasphaera_elsdenii0.0330.1530.188
phylumViruses_noname0.0310.1780.217
classViruses_noname0.0310.1780.217
speciesDorea_longicatena0.0310.1860.226
speciesLactococcus_phage_P680-0.0290.2060.25
genusCatenibacterium-0.0290.210.253
speciesClostridium_hathewayi0.0290.210.253
speciesCatenibacterium_mitsuokai-0.0290.210.253
orderViruses_noname0.0280.2270.273
speciesClostridium_clostridioforme-0.0280.2290.274
speciesBacteroides_oleiciplenus0.0280.2330.278
speciesCoprobacillus_sp_D6-0.0270.240.286
familySiphoviridae-0.0270.2430.289
speciesBifidobacterium_adolescentis-0.0260.2530.3
speciesBacteroides_sp_1_1_6-0.0260.260.308
speciesBifidobacterium_angulatum-0.0240.2940.347
genusGordonibacter0.0230.3150.37
speciesGordonibacter_pamelaeae0.0230.3150.37
speciesOlsenella_unclassified-0.0230.3210.376
speciesEubacterium_biforme-0.0220.3490.408
speciesClostridium_bolteae0.0210.3620.422
speciesPrevotella_bivia-0.020.380.442
familyPrevotellaceae-0.020.3840.445
speciesCoriobacteriaceae_bacterium_phI-0.020.3940.456
genusSiphoviridae_noname0.0190.4030.465
genusCoriobacteriaceae_noname-0.0190.4060.466
speciesAlistipes_unclassified-0.0190.4060.466
speciesCoprococcus_catus0.0190.4140.474
speciesAcidaminococcus_fermentans-0.0180.4270.488
speciesErysipelotrichaceae_bacterium_6_1_450.0180.4410.503
speciesBacteroides_pectinophilus-0.0180.4470.508
speciesClostridium_spiroforme0.0170.4540.515
orderAeromonadales0.0170.4560.516
speciesPorphyromonas_uenonis0.0170.4690.53
genusSutterellaceae_unclassified-0.0170.4740.534
speciesEubacterium_ramulus-0.0160.4980.56
speciesDialister_succinatiphilus0.0160.5030.564
speciesCoprococcus_comes0.0150.5130.574
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0150.5290.59
genusAdlercreutzia0.0140.5340.593
speciesAdlercreutzia_equolifaciens0.0140.5340.593
speciesBacteroides_faecis-0.0140.5380.596
speciesRuminococcus_lactaris0.0140.5440.601
speciesLachnospiraceae_bacterium_2_1_46FAA0.0140.5530.61
speciesBacteroides_barnesiae-0.0130.5630.619
orderCaudovirales0.0130.5680.623
speciesMegasphaera_unclassified0.0130.5720.626
speciesBacteroides_finegoldii0.0130.5770.629
speciesRuminococcus_bromii0.0130.5770.629
speciesRuminococcus_callidus0.0130.580.631
speciesLactococcus_phage_bIL670.0130.5830.633
speciesCoprococcus_eutactus0.0130.5860.634
speciesLactobacillus_ruminis-0.0120.5970.645
familyViruses_noname0.0120.6070.653
genusViruses_noname0.0120.6070.653
speciesClostridium_sp_ATCC_BAA_442-0.0110.620.665
speciesClostridiales_bacterium_1_7_47FAA0.010.6580.704
speciesHoldemania_sp_AP20.010.6610.706
speciesBacteroides_fluxus0.010.6760.72
speciesLactococcus_phage_jm20.0080.7230.767
genusSlackia0.0080.7240.767
speciesBacteroides_salyersiae0.0080.7250.767
speciesAcidaminococcus_intestini0.0080.730.771
speciesBacteroides_sp_3_1_19-0.0070.7470.787
genusButyricicoccus0.0060.7810.818
speciesButyricicoccus_pullicaecorum0.0060.7810.818
speciesHoldemania_unclassified-0.0060.7820.818
speciesLachnospiraceae_bacterium_8_1_57FAA0.0060.7990.834
speciesEubacterium_rectale-0.0060.8120.846
speciesEubacterium_dolichum0.0050.8370.87
speciesLactococcus_phage_936_sensu_lato-0.0050.8420.873
speciesBacteroides_intestinalis-0.0040.8470.877
speciesEubacterium_limosum-0.0040.8540.88
speciesClostridium_citroniae-0.0040.8540.88
genusClostridiales_noname-0.0040.8680.893
speciesBacteroides_eggerthii0.0040.870.893
speciesParabacteroides_sp_20_30.0030.8810.902
genusOlsenella-0.0030.8960.915
speciesLactococcus_phage_phi7-0.0030.9020.92
familyRuminococcaceae0.0020.9180.934
genusCollinsella-0.0020.9220.936
genusCoprococcus0.0020.9310.943
speciesBlautia_hydrogenotrophica-0.0010.9520.962
speciesBacteroides_sp_4_3_47FAA-0.0010.9660.973
speciesCollinsella_aerofaciens0.0010.9670.973
familyPodoviridae0.0010.970.974
speciesBacteroides_massiliensis0.0010.9810.983
speciesCollinsella_tanakaei0.00.9860.986
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.02937812040780.002678571926432.41650509317e-201110.372871
ObesityDenmark1691230.001316030106530.001612491274140.0075331869466621347.0172
Type II diabetesChina1831850.004707444408530.006002584809830.051278564386705623.3187
Colorectal cancerAustria64350.01097295557380.008664285721650.2643367423551099337.1938
Type II diabetesDenmark752770.001729341596890.001346079392260.4603972566231964864.4049
Type II diabetesSweden53920.01001796345850.005864173093850.4613392155051523851.6018
Ulcerative colitisSpain78660.005326673995490.002887450768510.5338860940661992265.7188
Rheumatoid arthritisChina127980.005663848786220.006038216397560.5976510946851979566.0119
Crohns diseaseSpain17660.004401869104760.002887450768510.7476115020962711590.1579
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382