MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-03-10 10:59:38 PST
Job id & description: 1769, GLUD2
Query type: protein
Count queries & homologs: 1, 84
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|P49448|DHE4_HUMAN1542902CompleteK00260COG0334Firmicutesunknown78.8591.4836.51
sp|P49448|DHE4_HUMAN1477186CompleteK00260COG0334FirmicutesGemella78.8590.9332.96
sp|P49448|DHE4_HUMAN1248629CompleteK00262COG0334ActinobacteriaBifidobacterium76.1689.7331.19
sp|P49448|DHE4_HUMAN1251103CompleteK00262COG0334ActinobacteriaBifidobacterium76.1689.7331.19
sp|P49448|DHE4_HUMAN1247941CompleteK00262COG0334ActinobacteriaBifidobacterium73.4886.8331.35
sp|P49448|DHE4_HUMAN1251209CompleteK00262COG0334ActinobacteriaBifidobacterium76.1689.7331.42
sp|P49448|DHE4_HUMAN1228722CompleteK00262COG0334Bacteroidetesunknown76.8890.2430.09
sp|P49448|DHE4_HUMAN1245109CompleteK00262COG0334ActinobacteriaBifidobacterium76.1689.7330.96
sp|P49448|DHE4_HUMAN1278070CompleteK00262COG0334FirmicutesClostridium74.7389.1930.52
sp|P49448|DHE4_HUMAN1245607CompleteK00262COG0334ActinobacteriaBifidobacterium73.4886.8331.12
sp|P49448|DHE4_HUMAN1265990CompleteK00262COG0334FirmicutesLactobacillus72.2287.2230.94
sp|P49448|DHE4_HUMAN1144999CompleteK00262COG0334ActinobacteriaBifidobacterium77.690.0630.73
sp|P49448|DHE4_HUMAN1225580CompleteK00262COG0334Bacteroidetesunknown71.3384.9231.14
sp|P49448|DHE4_HUMAN1666902Lack 3'-endK00262COG0334unknownunknown70.9795.7332.02
sp|P49448|DHE4_HUMAN1277515CompleteK00262COG0334unknownunknown71.1586.2630.92
sp|P49448|DHE4_HUMAN1277272CompleteK00262COG0334Firmicutesunknown74.5588.9630.59
sp|P49448|DHE4_HUMAN1074076CompleteK00262COG0334Firmicutesunknown74.7383.5430.28
sp|P49448|DHE4_HUMAN1276601CompleteK00262COG0334Bacteroidetesunknown70.9786.7131.31
sp|P49448|DHE4_HUMAN1278082CompleteK00262COG0334Firmicutesunknown71.5186.0430.98
sp|P49448|DHE4_HUMAN1282774CompleteK00262COG0334unknownunknown73.390.5230.81
sp|P49448|DHE4_HUMAN1108169CompleteK00262COG0334Firmicutesunknown74.7384.6230.99
sp|P49448|DHE4_HUMAN1219885Lack 5'-endK00262COG0334FirmicutesRuminococcus71.8684.9632.2
sp|P49448|DHE4_HUMAN1275721CompleteK00262COG0334FirmicutesRuminococcus71.8686.4932.2
sp|P49448|DHE4_HUMAN1279289CompleteK00262COG0334Firmicutesunknown74.5588.9631.22
sp|P49448|DHE4_HUMAN1239029CompleteK00262COG0334unknownunknown75.2789.3130.0
sp|P49448|DHE4_HUMAN1248850CompleteK00262COG0334ActinobacteriaBifidobacterium73.6687.0530.33
sp|P49448|DHE4_HUMAN1276311CompleteK00262COG0334FirmicutesClostridium81.3698.4230.77
sp|P49448|DHE4_HUMAN1276413CompleteK00262COG0334FirmicutesClostridium75.9991.8930.82
sp|P49448|DHE4_HUMAN1024795Lack 5'-endK00262COG0334Firmicutesunknown74.5581.7830.59
sp|P49448|DHE4_HUMAN1277935CompleteK00262COG0334unknownunknown71.6886.4931.87
sp|P49448|DHE4_HUMAN1275265CompleteK00262COG0334FirmicutesClostridium81.3698.4230.77
sp|P49448|DHE4_HUMAN1222375CompleteK00262COG0334unknownunknown77.2491.3530.27
sp|P49448|DHE4_HUMAN1279135CompleteK00262COG0334unknownunknown73.6690.7730.82
sp|P49448|DHE4_HUMAN1276623CompleteK00262COG0334Firmicutesunknown74.5588.9631.06
sp|P49448|DHE4_HUMAN1241703CompleteK00262COG0334FirmicutesSelenomonas71.1585.0831.37
sp|P49448|DHE4_HUMAN1257500CompleteK00262COG0334unknownunknown71.8685.9131.97
sp|P49448|DHE4_HUMAN1287166CompleteK00262COG0334unknownunknown71.3385.7830.22
sp|P49448|DHE4_HUMAN1226369CompleteK00262COG0334Firmicutesunknown71.5184.731.37
sp|P49448|DHE4_HUMAN1249161CompleteK00262COG0334FirmicutesSubdoligranulum72.0488.6230.22
sp|P49448|DHE4_HUMAN1274174CompleteK00262COG0334Firmicutesunknown71.5186.0431.13
sp|P49448|DHE4_HUMAN1275299CompleteK00262COG0334unknownunknown71.5186.0430.64
sp|P49448|DHE4_HUMAN1225605CompleteK00262COG0334Firmicutesunknown71.5184.731.22
sp|P49448|DHE4_HUMAN1279728CompleteK00262COG0334Firmicutesunknown71.5186.0431.37
sp|P49448|DHE4_HUMAN1238881CompleteK00262COG0334unknownunknown71.1584.8630.64
sp|P49448|DHE4_HUMAN782455CompleteK00262COG0334FirmicutesEubacterium76.5276.9130.18
sp|P49448|DHE4_HUMAN1262611CompleteK00262COG0334Firmicutesunknown74.1991.4830.21
sp|P49448|DHE4_HUMAN1278645CompleteK00262COG0334unknownunknown71.5186.0430.15
sp|P49448|DHE4_HUMAN1273746CompleteK00262COG0334BacteroidetesBacteroides71.1586.2630.27
sp|P49448|DHE4_HUMAN1246514CompleteK00262COG0334FirmicutesSubdoligranulum72.0488.6230.7
sp|P49448|DHE4_HUMAN1277806CompleteK00262COG0334BacteroidetesBacteroides70.6186.9431.23
sp|P49448|DHE4_HUMAN1258127Lack 5'-endK00262COG0334Firmicutesunknown70.6184.3430.45
sp|P49448|DHE4_HUMAN1072805CompleteK00262COG0334unknownunknown71.5180.5930.15
sp|P49448|DHE4_HUMAN1227130CompleteK00262COG0334FirmicutesRuminococcus71.8685.1430.58
sp|P49448|DHE4_HUMAN1276401CompleteK00262COG0334Firmicutesunknown71.5186.0430.39
sp|P49448|DHE4_HUMAN1272849CompleteK00262COG0334unknownunknown71.3386.9730.19
sp|P49448|DHE4_HUMAN1269776CompleteK00262COG0334Bacteroidetesunknown70.6186.9732.28
sp|P49448|DHE4_HUMAN1088311CompleteK00262COG0334unknownunknown72.9483.0131.67
sp|P49448|DHE4_HUMAN940251CompleteK00262COG0334FirmicutesRuminococcus71.5176.5530.39
sp|P49448|DHE4_HUMAN1506171Lack 3'-endK00262COG0334Firmicutesunknown71.5191.8330.66
sp|P49448|DHE4_HUMAN1271047Lack 5'-endK00262COG0334Firmicutesunknown71.1585.6230.47
sp|P49448|DHE4_HUMAN1225248CompleteK00262COG0334unknownunknown70.2583.5930.62
sp|P49448|DHE4_HUMAN1258193Lack 5'-endK00262COG0334unknownunknown71.5185.6831.31
sp|P49448|DHE4_HUMAN1668344Lack 3'-endK00262COG0334unknownunknown72.2297.4930.68
sp|P49448|DHE4_HUMAN1285927CompleteK00262COG0334unknownunknown71.6889.1630.02
sp|P49448|DHE4_HUMAN1271273CompleteK00262COG0334Bacteroidetesunknown70.6186.9731.18
sp|P49448|DHE4_HUMAN1232574CompleteK00262COG0334Firmicutesunknown74.1991.5630.16
sp|P49448|DHE4_HUMAN1267360CompleteK00262COG0334unknownunknown70.0786.9730.15
sp|P49448|DHE4_HUMAN1279387CompleteK00262COG0334unknownunknown70.9786.7130.39
sp|P49448|DHE4_HUMAN1241986CompleteK00262COG0334ProteobacteriaHaemophilus70.4385.9730.51
sp|P49448|DHE4_HUMAN1251580CompleteK00262COG0334unknownunknown70.4384.3430.52
sp|P49448|DHE4_HUMAN1275984CompleteK00262COG0334unknownunknown70.9786.7130.49
sp|P49448|DHE4_HUMAN1275570CompleteK00262COG0334unknownunknown72.7689.1930.42
sp|P49448|DHE4_HUMAN1227039CompleteK00262COG0334FirmicutesSubdoligranulum74.7387.830.23
sp|P49448|DHE4_HUMAN1257776CompleteK00262COG0334unknownunknown71.8686.5830.53
sp|P49448|DHE4_HUMAN1270760CompleteK00262COG0334unknownunknown71.1585.6230.39
sp|P49448|DHE4_HUMAN1285667CompleteK00262COG0334unknownunknown71.5186.030.64
sp|P49448|DHE4_HUMAN1103780Lack 5'-endK00262COG0334unknownunknown72.2282.7331.16
sp|P49448|DHE4_HUMAN1276397CompleteK00262COG0334Firmicutesunknown71.5186.0430.0
sp|P49448|DHE4_HUMAN1242796CompleteK00262COG0334ProteobacteriaHaemophilus70.4385.9730.02
sp|P49448|DHE4_HUMAN1240857CompleteK00262COG0334unknownunknown72.0486.1930.43
sp|P49448|DHE4_HUMAN1244079CompleteK00262COG0334FirmicutesButyrivibrio71.8689.0630.38
sp|P49448|DHE4_HUMAN1252520CompleteK00262COG0334unknownunknown70.4384.3430.52
sp|P49448|DHE4_HUMAN1013508CompleteK00262COG0334Firmicutesunknown70.4377.5331.19
sp|P49448|DHE4_HUMAN1239772CompleteK00262COG0334unknownunknown75.0988.8630.07
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumActinobacteria0.5361.17e-1392.76e-137
classActinobacteria0.5361.17e-1392.76e-137
orderBifidobacteriales0.4842.2e-1102.6e-108
familyBifidobacteriaceae0.4842.2e-1102.6e-108
genusBifidobacterium0.4811.07e-1081.01e-106
orderCoriobacteriales0.4377.54e-885.08e-86
familyCoriobacteriaceae0.4377.54e-885.08e-86
phylumBacteroidetes-0.4171.68e-797.98e-78
classBacteroidia-0.4171.69e-797.98e-78
orderBacteroidales-0.4171.69e-797.98e-78
speciesBifidobacterium_longum0.3877.96e-683.42e-66
genusAnaerostipes0.376.86e-622.7e-60
speciesRuminococcus_sp_5_1_39BFAA0.3649.32e-603.38e-58
speciesEubacterium_hallii0.3534.28e-561.44e-54
genusBlautia0.3391.25e-513.93e-50
orderClostridiales0.3239.71e-472.7e-45
classClostridia0.3239.72e-472.7e-45
genusDorea0.3161.71e-444.48e-43
speciesAnaerostipes_hadrus0.3145.08e-441.26e-42
speciesBifidobacterium_adolescentis0.3114.06e-439.58e-42
phylumFirmicutes0.3091.55e-423.48e-41
genusRuminococcus0.3069.59e-422.06e-40
speciesRuminococcus_torques0.3021.16e-402.38e-39
speciesErysipelotrichaceae_bacterium_21_30.3012.15e-404.23e-39
speciesRuminococcus_obeum0.2972.41e-394.55e-38
genusPrevotella-0.2956.88e-391.25e-37
familyLachnospiraceae0.2892.05e-373.58e-36
genusHaemophilus-0.2852.52e-364.25e-35
familyActinomycetaceae0.2853.24e-365.27e-35
speciesHaemophilus_parainfluenzae-0.2853.54e-365.57e-35
speciesStreptococcus_thermophilus0.2853.73e-365.68e-35
genusActinomyces0.2844.22e-366.22e-35
orderPasteurellales-0.2846.63e-369.2e-35
familyPasteurellaceae-0.2846.63e-369.2e-35
genusCollinsella0.2821.42e-351.91e-34
genusGordonibacter0.285.47e-356.98e-34
speciesGordonibacter_pamelaeae0.285.47e-356.98e-34
speciesPrevotella_copri-0.2732.97e-333.69e-32
speciesLachnospiraceae_bacterium_5_1_63FAA0.2692.31e-322.8e-31
speciesCollinsella_aerofaciens0.2643.27e-313.86e-30
familyPrevotellaceae-0.2644.37e-315.03e-30
speciesDorea_longicatena0.2635.29e-315.94e-30
familyBacteroidaceae-0.2594.25e-304.56e-29
genusBacteroides-0.2594.25e-304.56e-29
genusLachnospiraceae_noname0.2571.7e-291.78e-28
speciesEggerthella_lenta0.2531.05e-281.08e-27
speciesPrevotella_stercorea-0.2512.51e-282.52e-27
speciesClostridium_leptum0.2512.58e-282.54e-27
speciesErysipelotrichaceae_bacterium_2_2_44A0.2472.08e-272e-26
genusEggerthella0.2455.15e-274.86e-26
speciesBacteroides_plebeius-0.2422.09e-261.93e-25
orderActinomycetales0.2391.26e-251.14e-24
genusSubdoligranulum0.2372.61e-252.32e-24
speciesBacteroides_xylanisolvens-0.2356.55e-255.73e-24
familyRuminococcaceae0.2341.33e-241.14e-23
speciesSubdoligranulum_unclassified0.2315.3e-244.47e-23
speciesCoprococcus_comes0.236.8e-245.63e-23
speciesEggerthella_unclassified0.2291.08e-238.79e-23
speciesBifidobacterium_catenulatum0.2291.11e-238.88e-23
speciesRoseburia_inulinivorans-0.2291.38e-231.09e-22
speciesBlautia_producta0.2241.07e-228.28e-22
speciesBlautia_hydrogenotrophica0.226.25e-224.76e-21
speciesFusobacterium_mortiferum-0.227.44e-225.57e-21
speciesDorea_formicigenerans0.2171.91e-211.41e-20
speciesEubacterium_eligens-0.2154.71e-213.42e-20
classErysipelotrichia0.2131.23e-208.54e-20
orderErysipelotrichales0.2131.23e-208.54e-20
familyErysipelotrichaceae0.2131.23e-208.54e-20
genusAdlercreutzia0.2121.76e-201.19e-19
speciesAdlercreutzia_equolifaciens0.2121.76e-201.19e-19
speciesStreptococcus_sanguinis0.2112.56e-201.7e-19
speciesMegamonas_unclassified-0.2045.85e-193.84e-18
speciesClostridium_clostridioforme0.2037.17e-194.64e-18
speciesKlebsiella_pneumoniae-0.2037.41e-194.73e-18
genusMegamonas-0.2038.31e-195.23e-18
speciesEubacterium_ramulus0.2021.03e-186.4e-18
orderLactobacillales0.2021.12e-186.87e-18
familyBacillales_noname0.2011.96e-181.17e-17
genusGemella0.2011.96e-181.17e-17
classBacilli0.1994.53e-182.67e-17
speciesBacteroides_stercoris-0.1985.38e-183.14e-17
genusSolobacterium0.1976.98e-183.97e-17
speciesSolobacterium_moorei0.1976.98e-183.97e-17
genusCoprococcus0.1951.96e-171.1e-16
genusCoprobacillus0.1942.16e-171.2e-16
familyStreptococcaceae0.1942.27e-171.25e-16
genusStreptococcus0.1933.16e-171.71e-16
speciesClostridium_ramosum0.1933.57e-171.91e-16
speciesBacteroides_coprocola-0.1933.99e-172.12e-16
speciesLachnospiraceae_bacterium_1_4_56FAA0.1926.65e-173.49e-16
genusPseudoflavonifractor0.1919.43e-174.84e-16
speciesPseudoflavonifractor_capillosus0.1919.43e-174.84e-16
orderBacillales0.191.15e-165.84e-16
genusOlsenella0.1891.81e-169.09e-16
speciesErysipelotrichaceae_bacterium_6_1_450.1891.96e-169.74e-16
speciesBacteroides_vulgatus-0.1872.97e-161.46e-15
speciesEubacterium_siraeum0.1873.11e-161.51e-15
speciesBacteroides_massiliensis-0.1821.97e-159.49e-15
speciesCoprobacillus_unclassified0.1822.03e-159.68e-15
speciesCoprococcus_catus0.1813.02e-151.43e-14
genusKlebsiella-0.1813.53e-151.65e-14
speciesMegamonas_rupellensis-0.184.67e-152.16e-14
genusRoseburia-0.185.11e-152.34e-14
speciesBacteroides_thetaiotaomicron-0.1795.69e-152.58e-14
genusErysipelotrichaceae_noname0.1789.16e-154.12e-14
speciesMegamonas_hypermegale-0.1789.66e-154.3e-14
speciesStreptococcus_parasanguinis0.1771.47e-146.48e-14
speciesBacteroides_finegoldii-0.1725.89e-142.57e-13
speciesMegamonas_funiformis-0.1726.52e-142.82e-13
phylumVerrucomicrobia0.1727.32e-143e-13
classVerrucomicrobiae0.1727.32e-143e-13
orderVerrucomicrobiales0.1727.32e-143e-13
familyVerrucomicrobiaceae0.1727.32e-143e-13
genusAkkermansia0.1727.32e-143e-13
speciesAkkermansia_muciniphila0.1727.32e-143e-13
genusEnterococcus0.171.47e-135.98e-13
speciesLachnospiraceae_bacterium_7_1_58FAA0.1691.87e-137.54e-13
classBetaproteobacteria-0.1692.19e-138.76e-13
speciesLactobacillus_rhamnosus0.1673.14e-131.25e-12
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1673.95e-131.55e-12
familyEnterococcaceae0.1664.59e-131.79e-12
speciesBifidobacterium_bifidum0.1665.55e-132.15e-12
speciesLactobacillus_casei_paracasei0.1658.19e-133.14e-12
orderBurkholderiales-0.1648.9e-133.39e-12
speciesOlsenella_unclassified0.1621.89e-127.14e-12
speciesBacteroides_ovatus-0.1612.2e-128.24e-12
familySutterellaceae-0.1612.69e-121e-11
speciesStreptococcus_mutans0.162.98e-121.1e-11
genusFusobacterium-0.1594.16e-121.52e-11
speciesLactococcus_lactis0.1594.62e-121.68e-11
phylumFusobacteria-0.1586.1e-122.16e-11
classFusobacteriia-0.1586.1e-122.16e-11
orderFusobacteriales-0.1586.1e-122.16e-11
familyFusobacteriaceae-0.1586.66e-122.35e-11
speciesLactobacillus_delbrueckii0.1579.32e-123.26e-11
speciesDialister_invisus0.1561.35e-114.69e-11
speciesLachnospiraceae_bacterium_5_1_57FAA0.1551.85e-116.37e-11
speciesLachnospiraceae_bacterium_3_1_46FAA0.1532.95e-111.01e-10
genusSiphoviridae_noname0.1533.22e-111.09e-10
speciesBacteroides_nordii-0.1523.64e-111.23e-10
speciesVeillonella_unclassified-0.157.58e-112.54e-10
phylumProteobacteria-0.1491.05e-103.44e-10
genusBarnesiella0.1491.05e-103.44e-10
speciesBarnesiella_intestinihominis0.1491.05e-103.44e-10
speciesButyrivibrio_crossotus0.1491.09e-103.55e-10
speciesRoseburia_unclassified0.1452.6e-108.41e-10
genusButyrivibrio0.1434.7e-101.51e-09
familyLactobacillaceae0.1427.49e-102.39e-09
speciesBacteroides_intestinalis-0.1427.62e-102.41e-09
genusPropionibacterium0.1427.72e-102.43e-09
speciesSubdoligranulum_sp_4_3_54A2FAA0.1419.41e-102.94e-09
genusDialister0.1411.01e-093.14e-09
genusEnterobacter-0.1411.02e-093.15e-09
speciesPropionibacterium_freudenreichii0.141.07e-093.28e-09
genusLactococcus0.141.09e-093.32e-09
speciesEnterococcus_faecium0.141.19e-093.6e-09
familySiphoviridae0.1391.67e-095.02e-09
familyClostridiales_Family_XI_Incertae_Sedis0.1391.68e-095.02e-09
speciesRuminococcus_bromii0.1372.64e-097.84e-09
genusPeptostreptococcus0.1372.88e-098.5e-09
genusLactobacillus0.1363.16e-099.26e-09
speciesBacteroides_caccae-0.1363.2e-099.32e-09
classGammaproteobacteria-0.1363.36e-099.67e-09
genusRothia0.1363.36e-099.67e-09
familyMicrococcaceae0.1363.51e-091e-08
genusVeillonella-0.1354.67e-091.33e-08
genusAnaerotruncus0.1355.1e-091.44e-08
genusClostridium0.1345.53e-091.55e-08
speciesRothia_mucilaginosa0.1346.42e-091.79e-08
familyClostridiaceae0.1337.15e-091.99e-08
speciesEnterobacter_cloacae-0.1329.86e-092.72e-08
familyPropionibacteriaceae0.1321.13e-083.1e-08
speciesClostridium_nexile-0.1282.93e-087.99e-08
speciesClostridium_bolteae0.1264.1e-081.11e-07
phylumViruses_noname0.1255.72e-081.53e-07
classViruses_noname0.1255.72e-081.53e-07
familyEubacteriaceae0.1255.91e-081.58e-07
speciesPrevotella_buccae-0.1256e-081.59e-07
genusEubacterium0.1246.65e-081.75e-07
speciesBifidobacterium_breve0.1247.96e-082.09e-07
speciesStreptococcus_gordonii0.1238.65e-082.26e-07
speciesEubacterium_limosum0.1238.7e-082.26e-07
genusOdoribacter-0.1221.12e-072.89e-07
speciesEggerthella_sp_1_3_56FAA0.1211.49e-073.82e-07
speciesStreptococcus_vestibularis0.121.95e-074.98e-07
speciesRuminococcus_callidus-0.1192.25e-075.71e-07
speciesParabacteroides_merdae-0.1192.42e-076.11e-07
speciesBifidobacterium_animalis0.1192.45e-076.15e-07
speciesVeillonella_parvula-0.1192.7e-076.74e-07
genusParvimonas0.1182.99e-077.43e-07
speciesStreptococcus_mitis_oralis_pneumoniae0.1183.02e-077.46e-07
speciesParvimonas_unclassified0.1183.09e-077.6e-07
genusLeuconostoc0.1173.71e-079.07e-07
genusActinobacillus-0.1174.16e-071.01e-06
speciesActinobacillus_unclassified-0.1174.16e-071.01e-06
speciesStreptococcus_salivarius0.1164.53e-071.09e-06
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speciesOdoribacter_splanchnicus-0.1165.09e-071.21e-06
speciesVeillonella_atypica-0.1155.53e-071.31e-06
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speciesVeillonella_dispar-0.1156.8e-071.59e-06
speciesParabacteroides_goldsteinii-0.1156.82e-071.59e-06
speciesAnaerotruncus_colihominis0.1147.67e-071.78e-06
genusRuminococcaceae_noname0.1148.06e-071.86e-06
speciesRuminococcaceae_bacterium_D160.1148.06e-071.86e-06
speciesLactococcus_phage_P6800.1148.19e-071.88e-06
speciesLachnospiraceae_bacterium_2_1_58FAA0.1148.47e-071.93e-06
speciesRuminococcus_sp_JC3040.1138.7e-071.97e-06
speciesAlistipes_shahii-0.1139.21e-072.08e-06
speciesBacteroides_faecis-0.1121.31e-062.94e-06
speciesBacteroides_salyersiae-0.1121.34e-063e-06
genusAggregatibacter-0.111.77e-063.94e-06
speciesLachnospiraceae_bacterium_6_1_63FAA0.111.92e-064.25e-06
speciesBifidobacterium_dentium0.112.04e-064.5e-06
genusFaecalibacterium-0.1092.21e-064.83e-06
speciesFaecalibacterium_prausnitzii-0.1092.21e-064.83e-06
speciesRoseburia_intestinalis-0.1064.46e-069.7e-06
speciesAnaerotruncus_unclassified0.1055.73e-061.24e-05
speciesLactobacillus_acidophilus0.1047.16e-061.54e-05
orderPseudomonadales0.1037.32e-061.57e-05
speciesMitsuokella_unclassified0.1037.97e-061.7e-05
speciesCampylobacter_concisus-0.1029.24e-061.96e-05
speciesAnaerostipes_unclassified0.1011.15e-052.43e-05
speciesCitrobacter_freundii-0.1011.31e-052.76e-05
speciesClostridium_asparagiforme0.11.58e-053.31e-05
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0991.87e-053.91e-05
speciesClostridium_hathewayi0.0982e-054.16e-05
speciesAlistipes_unclassified0.0982.01e-054.16e-05
speciesPeptostreptococcus_anaerobius0.0982.25e-054.64e-05
speciesMethanobrevibacter_smithii0.0972.52e-055.17e-05
speciesC2likevirus_unclassified0.0972.53e-055.17e-05
genusMethanobrevibacter0.0972.84e-055.78e-05
genusC2likevirus0.0972.86e-055.79e-05
speciesEubacterium_cylindroides0.0972.88e-055.81e-05
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0963.11e-056.25e-05
genusSutterellaceae_unclassified-0.0963.16e-056.29e-05
genusMitsuokella0.0963.17e-056.29e-05
genusHoldemania0.0963.17e-056.29e-05
speciesLactobacillus_plantarum0.0963.3e-056.52e-05
speciesHoldemania_filiformis0.0953.55e-056.98e-05
genusParasutterella-0.0944.56e-058.89e-05
speciesParasutterella_excrementihominis-0.0944.56e-058.89e-05
speciesBacteroides_oleiciplenus-0.0926.28e-050.000122
speciesAggregatibacter_segnis-0.0927.38e-050.000143
speciesBacteroides_coprophilus-0.0917.84e-050.000151
speciesStreptococcus_australis0.0918.08e-050.000155
speciesLactobacillus_amylovorus0.0918.33e-050.000159
phylumEuryarchaeota0.098.97e-050.00017
classMethanobacteria0.099.04e-050.00017
orderMethanobacteriales0.099.04e-050.00017
familyMethanobacteriaceae0.099.04e-050.00017
speciesLactobacillus_gasseri0.099.16e-050.000172
speciesGemella_morbillorum0.090.00010.000187
speciesAcidaminococcus_unclassified0.0890.0001160.000216
genusMegasphaera-0.0890.0001250.000231
speciesErysipelotrichaceae_bacterium_3_1_530.0870.0001530.000282
classEpsilonproteobacteria-0.0870.000180.000329
orderCampylobacterales-0.0870.000180.000329
speciesClostridium_perfringens-0.0860.0001970.000359
speciesAlistipes_sp_AP110.0860.0001990.000361
speciesAlistipes_putredinis-0.0860.0002120.000383
speciesEubacterium_sp_3_1_310.0850.0002320.000418
familyLeuconostocaceae0.0850.0002370.000425
genusClostridiales_noname0.0850.0002380.000426
speciesClostridium_spiroforme0.0850.0002440.000435
genusCitrobacter-0.0840.0002740.000486
genusCampylobacter-0.0830.0003350.000592
speciesEnterococcus_faecalis0.0830.0003410.000601
orderEnterobacteriales-0.0820.0003810.000666
familyEnterobacteriaceae-0.0820.0003810.000666
classNegativicutes-0.0820.0004150.000719
orderSelenomonadales-0.0820.0004150.000719
familyCampylobacteraceae-0.0820.0004160.000719
speciesClostridiales_bacterium_1_7_47FAA0.0810.0004220.000727
speciesEnterobacter_aerogenes-0.0810.0004550.000781
speciesCoriobacteriaceae_bacterium_phI0.080.0004990.000853
genusCoriobacteriaceae_noname0.080.0005410.000922
speciesPeptostreptococcus_stomatis0.080.0005670.000963
genusBurkholderiales_noname-0.0790.0006340.00107
speciesBurkholderiales_bacterium_1_1_47-0.0790.0006340.00107
speciesCitrobacter_unclassified-0.0790.0006580.00111
familyBurkholderiales_noname-0.0790.0006660.00111
speciesClostridium_sp_KLE_17550.0780.0006910.00115
genusCoprobacter0.0780.0007730.00128
speciesCoprobacter_fastidiosus0.0780.0007730.00128
speciesCoprobacillus_sp_D60.0780.0007870.0013
speciesEubacterium_dolichum0.0770.0008090.00133
speciesStreptococcus_anginosus0.0770.0009270.00152
speciesBacteroides_eggerthii-0.0760.0009880.00161
genusAcidaminococcaceae_unclassified0.0760.001060.00173
speciesMegasphaera_micronuciformis-0.0760.001080.00175
familyVeillonellaceae-0.0750.001190.00192
speciesOdoribacter_laneus0.070.00260.00419
speciesParabacteroides_unclassified0.0690.002650.00425
speciesFusobacterium_varium-0.0680.003050.00488
speciesClostridium_bartlettii0.0680.003260.0052
genusPeptoniphilus0.0670.00350.00556
speciesStreptococcus_infantarius-0.0660.004030.00638
genusButyricimonas-0.0660.004350.00684
speciesButyricimonas_synergistica-0.0660.004350.00684
genusButyricicoccus0.0650.00470.00735
speciesButyricicoccus_pullicaecorum0.0650.00470.00735
orderViruses_noname0.0650.004880.0076
speciesMitsuokella_multacida-0.0650.004920.00764
speciesHaemophilus_paraphrohaemolyticus-0.0630.006180.00956
genusAcidaminococcus0.0610.007880.0122
familyStaphylococcaceae0.0610.008720.0134
speciesMethanobrevibacter_unclassified0.0590.01030.0158
speciesBacteroides_dorei-0.0580.01140.0174
familyRikenellaceae-0.0580.01160.0176
genusAlistipes-0.0580.01160.0176
speciesBilophila_unclassified-0.0580.01240.0188
genusEscherichia-0.0580.01260.019
speciesAlistipes_finegoldii-0.0570.01320.0198
speciesAlistipes_sp_HGB50.0570.01360.0204
genusMorganella0.0570.01390.0207
speciesMorganella_morganii0.0570.01390.0207
speciesParaprevotella_xylaniphila-0.0570.0140.0208
genusStaphylococcus0.0570.01420.021
speciesLactobacillus_salivarius-0.0570.01450.0214
genusBilophila-0.0560.01550.0227
speciesFusobacterium_ulcerans-0.0560.01550.0227
speciesOscillibacter_sp_KLE_17450.0550.01650.0241
classDeltaproteobacteria-0.0550.0170.0246
orderDesulfovibrionales-0.0550.0170.0246
familyDesulfovibrionaceae-0.0550.0170.0246
familyPeptostreptococcaceae0.0540.01870.027
speciesEscherichia_coli-0.0540.01920.0276
speciesClostridium_symbiosum0.0530.02190.0314
speciesStreptococcus_phage_Sfi210.0530.02230.0319
speciesBifidobacterium_pseudocatenulatum0.0520.02320.0331
genusPyramidobacter-0.0520.02460.0349
speciesPyramidobacter_piscolens-0.0520.02460.0349
speciesLactobacillus_crispatus0.0510.02650.0374
familyPorphyromonadaceae0.0510.02710.0382
speciesMegasphaera_unclassified-0.0510.02810.0395
speciesKlebsiella_phage_KP36-0.050.02930.041
speciesAlistipes_onderdonkii0.050.03120.0436
speciesTuricibacter_sanguinis0.050.03190.0444
speciesCollinsella_tanakaei-0.0490.03330.0462
speciesRuminococcus_gnavus0.0490.03480.0482
speciesRoseburia_hominis-0.0470.04390.0606
speciesEubacterium_rectale0.0460.0450.0619
speciesLactococcus_phage_jm20.0460.04510.0619
genusPhascolarctobacterium-0.0460.04680.0638
speciesPhascolarctobacterium_succinatutens-0.0460.04680.0638
genusParaprevotella-0.0440.0590.0803
genusTuricibacter0.0430.06120.083
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0430.06340.0857
genusPeptostreptococcaceae_noname0.0430.06370.0859
speciesBacteroides_clarus-0.0420.06820.0917
genusClostridiaceae_noname0.0420.07090.0945
speciesClostridiaceae_bacterium_JC1180.0420.07090.0945
speciesParaprevotella_unclassified-0.0420.0710.0945
speciesLactococcus_phage_phi70.0420.07120.0945
speciesBacteroides_fragilis-0.0420.07130.0945
speciesEscherichia_unclassified-0.0410.07560.1
speciesLactobacillus_vaginalis0.0410.07640.101
genusMyoviridae_noname-0.0410.0790.104
speciesClostridium_citroniae0.040.0820.108
familyOscillospiraceae0.040.08290.108
genusOscillibacter0.040.08290.108
speciesOscillibacter_unclassified0.040.08340.108
speciesBacteroides_fluxus-0.0390.09010.117
genusTunalikevirus-0.0390.0920.119
speciesParaprevotella_clara-0.0390.09490.122
genusPorphyromonas0.0380.1010.129
speciesPrevotella_bivia0.0380.1010.129
phylumSynergistetes-0.0380.1020.129
classSynergistia-0.0380.1020.129
orderSynergistales-0.0380.1020.129
familySynergistaceae-0.0380.1020.129
speciesHaemophilus_sputorum-0.0370.1140.144
speciesTuricibacter_unclassified0.0350.130.164
genusFlavonifractor0.0350.1350.169
speciesFlavonifractor_plautii0.0350.1350.169
speciesCoprobacillus_sp_29_10.0340.1420.178
speciesBacteroides_uniformis-0.0340.1460.182
speciesEubacterium_biforme-0.0340.1470.183
speciesEubacterium_ventriosum0.0340.1470.183
orderAeromonadales-0.0330.1550.192
speciesLactobacillus_ruminis-0.0320.1620.2
speciesDesulfovibrio_desulfuricans0.0310.1790.221
speciesLactobacillus_sanfranciscensis0.0290.2070.254
speciesHoldemania_unclassified0.0290.2110.259
speciesSutterella_parvirubra-0.0290.2130.26
speciesBacteroides_barnesiae0.0280.220.268
speciesLactobacillus_mucosae-0.0280.2210.269
speciesKlebsiella_sp_MS_92_3-0.0280.2220.269
speciesKlebsiella_unclassified-0.0280.2220.269
speciesBacteroides_sp_2_1_22-0.0280.2250.272
speciesBacteroides_sp_3_1_19-0.0280.2330.281
speciesDesulfovibrio_piger-0.0270.2360.283
speciesLactobacillus_oris0.0270.2370.284
speciesParabacteroides_sp_20_30.0270.2380.284
speciesCollinsella_unclassified0.0270.2410.287
speciesLactobacillus_fermentum0.0270.2490.296
speciesHoldemania_sp_AP20.0260.2670.316
speciesParabacteroides_johnsonii-0.0260.2670.316
speciesLactococcus_phage_936_sensu_lato0.0250.280.33
speciesButyrivibrio_unclassified0.0250.2810.331
speciesStreptococcus_pasteurianus-0.0250.2870.337
speciesLactococcus_garvieae-0.0240.2950.346
familyBacteroidales_noname0.0240.3080.358
genusBacteroidales_noname0.0240.3080.358
speciesBacteroidales_bacterium_ph80.0240.3080.358
speciesBilophila_wadsworthia-0.0230.3290.382
speciesRuminococcus_champanellensis0.0220.3320.384
speciesLactobacillus_reuteri0.0210.3670.424
speciesParabacteroides_sp_D130.0210.3690.425
speciesLeuconostoc_lactis-0.0210.3710.426
speciesBacteroides_sp_4_3_47FAA-0.020.3850.441
speciesPorphyromonas_asaccharolytica0.020.3890.445
speciesLactococcus_phage_bIL670.0190.4010.457
familyViruses_noname0.0190.4070.462
genusViruses_noname0.0190.4070.462
speciesPeptostreptococcaceae_noname_unclassified-0.0190.4150.47
familyMyoviridae-0.0190.4230.478
genusLambdalikevirus0.0180.4410.497
genusParabacteroides-0.0170.4650.523
speciesBacteroides_pectinophilus0.0170.4670.524
speciesCoprococcus_sp_ART55_10.0170.4710.527
familyAcidaminococcaceae0.0160.4980.554
genusSlackia0.0160.4980.554
genusOxalobacter-0.0150.5080.563
speciesOxalobacter_formigenes-0.0150.5080.563
speciesAlistipes_senegalensis-0.0150.5140.568
speciesWeissella_confusa-0.0150.520.573
speciesCoprococcus_eutactus-0.0150.5280.581
speciesBacteroides_cellulosilyticus-0.0140.5390.591
genusProteus-0.0140.540.591
genusSutterella-0.0140.5410.591
speciesParabacteroides_distasonis-0.0130.5690.62
speciesMegasphaera_elsdenii-0.0130.5850.636
speciesEnterobacteria_phage_HK544-0.0130.5880.638
speciesFusobacterium_nucleatum-0.0120.5970.646
speciesBifidobacterium_angulatum0.0110.6230.673
familyOxalobacteraceae-0.0110.6270.676
speciesLachnospiraceae_bacterium_1_1_57FAA0.0110.6310.678
speciesLachnospiraceae_bacterium_8_1_57FAA0.010.6590.707
genusCatenibacterium-0.010.670.715
speciesCatenibacterium_mitsuokai-0.010.670.715
speciesBacteroides_salanitronis0.0090.6980.744
speciesClostridium_sp_ATCC_BAA_442-0.0080.7210.766
speciesSutterella_wadsworthensis-0.0080.7310.775
speciesAcidaminococcus_fermentans-0.0080.7360.779
genusMethanosphaera0.0080.7410.78
speciesMethanosphaera_stadtmanae0.0080.7410.78
speciesWeissella_cibaria0.0080.7420.78
speciesStreptococcus_lutetiensis0.0070.760.795
genusSuccinatimonas-0.0070.7610.795
speciesSuccinatimonas_hippei-0.0070.7610.795
genusDesulfovibrio0.0070.7760.809
speciesProteus_mirabilis-0.0060.8050.837
genusPantoea0.0050.8240.853
speciesPantoea_unclassified0.0050.8240.853
speciesBacteroides_sp_1_1_6-0.0050.840.868
genusWeissella0.0040.8640.89
speciesCollinsella_intestinalis0.0040.870.895
speciesDorea_unclassified0.0040.8780.901
speciesClostridium_sp_L2_500.0030.880.901
familyPodoviridae-0.0030.8930.912
familySuccinivibrionaceae-0.0030.9130.928
speciesOscillibacter_sp_KLE_1728-0.0030.9140.928
speciesDialister_succinatiphilus-0.0020.9150.928
speciesAlistipes_indistinctus-0.0020.9160.928
speciesOdoribacter_unclassified0.0020.9210.931
speciesPorphyromonas_uenonis0.0020.9230.931
speciesSlackia_piriformis0.0020.9270.933
speciesKlebsiella_oxytoca-0.0020.9360.94
speciesAcidaminococcus_intestini-0.0010.9680.97
speciesRuminococcus_lactaris0.00.9950.995
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.08725623500460.0445598470391.17016494886e-1000.0
Crohns diseaseSpain17660.102712212560.07372545509060.00960799302076801926.6633
ObesityDenmark1691230.05997630110170.0705183799660.0235166897174345111.3479
Rheumatoid arthritisChina127980.06889635840140.0615885721650.180419225298816327.2218
Type II diabetesDenmark752770.06956378621050.0645467286050.2408841703691416646.4352
Liver cirrhosisChina1201140.03970836219190.03785638890930.2575853437882032268.2656
Colorectal cancerAustria64350.1540782247640.1778080541770.3583226520941403147.4726
Ulcerative colitisSpain78660.06870224123020.07372545509060.4888847254081886062.2155
Type II diabetesSweden53920.10130794460.09730476382290.5119545383971643255.6451
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382