MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-03-10 11:00:21 PST
Job id & description: 1770, AMY1A
Query type: protein
Count queries & homologs: 1, 4
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|P04745|AMY1_HUMAN894622CompleteK01200COG0366unknownunknown94.3287.0336.25
sp|P04745|AMY1_HUMAN732428Lack 5'-endK01176COG0366ActinobacteriaBifidobacterium91.3977.936.97
sp|P04745|AMY1_HUMAN877426CompleteK01200COG0366unknownunknown91.089.6730.61
sp|P04745|AMY1_HUMAN1449113CompleteK01176COG0366ActinobacteriaBifidobacterium80.0487.9132.94
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesBifidobacterium_adolescentis0.9520.00.0
genusBifidobacterium0.6133.35e-1937.91e-191
orderBifidobacteriales0.6122.34e-1922.76e-190
familyBifidobacteriaceae0.6122.34e-1922.76e-190
phylumActinobacteria0.5683.02e-1602.38e-158
classActinobacteria0.5683.02e-1602.38e-158
speciesCollinsella_aerofaciens0.4714.11e-1042.77e-102
genusCollinsella0.4581.35e-977.97e-96
speciesBifidobacterium_longum0.4341.2e-866.29e-85
speciesDorea_longicatena0.4292.04e-849.63e-83
orderCoriobacteriales0.4259.62e-833.78e-81
familyCoriobacteriaceae0.4259.62e-833.78e-81
genusCoprococcus0.4014.95e-731.8e-71
genusDorea0.3861.55e-675.23e-66
speciesSubdoligranulum_unclassified0.3742.53e-637.96e-62
speciesCoprococcus_comes0.3743.15e-639.29e-62
speciesEubacterium_hallii0.3722.19e-626.08e-61
genusSubdoligranulum0.3716.15e-621.61e-60
speciesCoprococcus_catus0.3686.83e-611.7e-59
familyBacteroidaceae-0.3625.71e-591.28e-57
genusBacteroides-0.3625.71e-591.28e-57
classBacteroidia-0.3563.98e-577.93e-56
orderBacteroidales-0.3563.98e-577.93e-56
phylumBacteroidetes-0.3564.03e-577.93e-56
speciesBifidobacterium_catenulatum0.3565.15e-579.72e-56
familyRuminococcaceae0.3314.62e-498.39e-48
speciesOlsenella_unclassified0.3152.9e-445.07e-43
speciesBifidobacterium_bifidum0.3137.56e-441.27e-42
speciesMitsuokella_unclassified0.2964.37e-397.11e-38
genusOlsenella0.2924.25e-386.69e-37
genusMitsuokella0.2924.73e-387.2e-37
speciesEubacterium_siraeum0.291.55e-372.29e-36
speciesDorea_formicigenerans0.2891.98e-372.83e-36
phylumFirmicutes0.2893.02e-374.19e-36
speciesRuminococcus_obeum0.2886.06e-378.17e-36
classClostridia0.2861.31e-361.67e-35
orderClostridiales0.2861.31e-361.67e-35
speciesRuminococcus_sp_5_1_39BFAA0.2852.29e-362.84e-35
speciesClostridium_bolteae-0.2844.84e-365.86e-35
genusRuminococcus0.2839.24e-361.09e-34
speciesClostridium_leptum0.2821.85e-352.13e-34
speciesEubacterium_ramulus0.2812.86e-353.21e-34
speciesRuminococcus_gnavus-0.2798.53e-359.36e-34
speciesAnaerostipes_hadrus0.2781.31e-341.41e-33
speciesMethanobrevibacter_smithii0.2716.65e-336.98e-32
familyFusobacteriaceae-0.2684.06e-324.17e-31
speciesBacteroides_thetaiotaomicron-0.2669.04e-329.08e-31
phylumEuryarchaeota0.2661.49e-311.47e-30
genusFusobacterium-0.2652.14e-312.04e-30
genusMethanobrevibacter0.2652.16e-312.04e-30
phylumFusobacteria-0.2643.71e-313.3e-30
classFusobacteriia-0.2643.71e-313.3e-30
orderFusobacteriales-0.2643.71e-313.3e-30
classMethanobacteria0.2595.5e-304.64e-29
orderMethanobacteriales0.2595.5e-304.64e-29
familyMethanobacteriaceae0.2595.5e-304.64e-29
speciesStreptococcus_thermophilus0.2538.34e-296.91e-28
genusButyrivibrio0.2464.34e-273.53e-26
familyBacteroidales_noname0.2456.98e-275.4e-26
genusBacteroidales_noname0.2456.98e-275.4e-26
speciesBacteroidales_bacterium_ph80.2456.98e-275.4e-26
speciesKlebsiella_pneumoniae-0.2422.2e-261.67e-25
genusKlebsiella-0.2382e-251.5e-24
genusBarnesiella0.2341.31e-249.51e-24
speciesBarnesiella_intestinihominis0.2341.31e-249.51e-24
speciesClostridium_nexile-0.235.93e-244.24e-23
speciesEubacterium_rectale0.2291.27e-238.95e-23
speciesAnaerotruncus_unclassified0.2263.97e-232.76e-22
genusRuminococcaceae_noname0.2264.27e-232.88e-22
speciesRuminococcaceae_bacterium_D160.2264.27e-232.88e-22
speciesFusobacterium_mortiferum-0.2231.55e-221.03e-21
speciesLactobacillus_ruminis0.2222.71e-221.78e-21
speciesClostridiales_bacterium_1_7_47FAA-0.2213.6e-222.33e-21
speciesEubacterium_biforme0.2214.96e-223.16e-21
speciesRuminococcus_bromii0.2163.32e-212.09e-20
genusPseudoflavonifractor0.2163.41e-212.09e-20
speciesPseudoflavonifractor_capillosus0.2163.41e-212.09e-20
speciesSutterella_wadsworthensis0.2154.42e-212.67e-20
speciesCoprococcus_sp_ART55_10.2148.45e-215.05e-20
phylumVerrucomicrobia0.2112.56e-201.42e-19
classVerrucomicrobiae0.2112.56e-201.42e-19
orderVerrucomicrobiales0.2112.56e-201.42e-19
familyVerrucomicrobiaceae0.2112.56e-201.42e-19
genusAkkermansia0.2112.56e-201.42e-19
speciesAkkermansia_muciniphila0.2112.56e-201.42e-19
classGammaproteobacteria-0.2112.67e-201.47e-19
speciesBacteroides_xylanisolvens-0.2113.12e-201.69e-19
speciesCoprobacillus_unclassified-0.213.71e-201.99e-19
genusAnaerostipes0.214.38e-202.32e-19
genusAdlercreutzia0.2071.61e-198.35e-19
speciesAdlercreutzia_equolifaciens0.2071.61e-198.35e-19
speciesClostridium_symbiosum-0.2062.2e-191.13e-18
speciesLachnospiraceae_bacterium_3_1_46FAA0.2038.94e-194.54e-18
orderEnterobacteriales-0.2011.6e-187.95e-18
familyEnterobacteriaceae-0.2011.6e-187.95e-18
genusSutterella0.22.6e-181.28e-17
speciesBacteroides_fragilis-0.1942.7e-171.31e-16
genusErysipelotrichaceae_noname0.1942.91e-171.4e-16
speciesEscherichia_coli-0.1918.73e-174.16e-16
genusEscherichia-0.191.01e-164.77e-16
genusFlavonifractor-0.1891.5e-166.94e-16
speciesFlavonifractor_plautii-0.1891.5e-166.94e-16
speciesEubacterium_ventriosum0.1882.71e-161.24e-15
genusCoprobacillus-0.1874.26e-161.93e-15
genusEubacterium0.1866e-162.68e-15
familyEubacteriaceae0.1866.01e-162.68e-15
familyAcidaminococcaceae0.1856.55e-162.89e-15
genusCatenibacterium0.1857.16e-163.1e-15
speciesCatenibacterium_mitsuokai0.1857.16e-163.1e-15
speciesFusobacterium_ulcerans-0.1841.11e-154.76e-15
speciesClostridium_hathewayi-0.1831.32e-155.61e-15
speciesClostridium_citroniae-0.1822.09e-158.81e-15
speciesBacteroides_stercoris-0.1812.97e-151.24e-14
genusDialister0.184.93e-152.04e-14
speciesBacteroides_nordii-0.1788.55e-153.51e-14
familyLactobacillaceae0.1781.03e-144.19e-14
speciesFusobacterium_varium-0.1761.56e-146.29e-14
speciesButyrivibrio_unclassified0.1761.96e-147.84e-14
genusLactobacillus0.1725.92e-142.35e-13
speciesPrevotella_buccae-0.1726.57e-142.58e-13
speciesBifidobacterium_animalis0.1719.41e-143.67e-13
speciesEubacterium_cylindroides0.1691.63e-136.31e-13
phylumProteobacteria-0.1691.65e-136.33e-13
familyLachnospiraceae0.1691.68e-136.39e-13
speciesClostridium_ramosum-0.1691.8e-136.8e-13
speciesMethanobrevibacter_unclassified0.1691.88e-137.04e-13
classErysipelotrichia0.1682.56e-139.37e-13
orderErysipelotrichales0.1682.56e-139.37e-13
familyErysipelotrichaceae0.1682.56e-139.37e-13
genusCoprobacter0.1673.51e-131.26e-12
speciesCoprobacter_fastidiosus0.1673.51e-131.26e-12
genusAnaerotruncus0.1673.59e-131.28e-12
genusClostridiales_noname-0.1641.06e-123.76e-12
speciesErysipelotrichaceae_bacterium_21_30.1631.49e-125.25e-12
speciesLachnospiraceae_bacterium_7_1_58FAA0.1621.87e-126.54e-12
speciesBacteroides_ovatus-0.1594.08e-121.42e-11
speciesBlautia_hydrogenotrophica0.1595.44e-121.87e-11
speciesBacteroides_intestinalis-0.1586.26e-122.14e-11
speciesButyrivibrio_crossotus0.1586.88e-122.34e-11
speciesClostridium_asparagiforme-0.1578.62e-122.91e-11
speciesAlistipes_senegalensis0.1579.37e-123.14e-11
speciesBacteroides_salyersiae-0.1551.39e-114.62e-11
phylumViruses_noname0.1523.46e-111.13e-10
classViruses_noname0.1523.46e-111.13e-10
speciesMegamonas_unclassified-0.1523.75e-111.22e-10
speciesPrevotella_stercorea-0.1523.87e-111.25e-10
genusC2likevirus0.1524.18e-111.34e-10
genusMegamonas-0.1524.27e-111.36e-10
speciesC2likevirus_unclassified0.156.95e-112.2e-10
familySiphoviridae0.1499.87e-113.11e-10
speciesLactococcus_lactis0.1491.02e-103.19e-10
speciesDialister_invisus0.1481.23e-103.82e-10
speciesBifidobacterium_angulatum0.1481.25e-103.86e-10
speciesMegasphaera_micronuciformis-0.1462.19e-106.71e-10
genusHaemophilus-0.1462.54e-107.73e-10
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.1462.58e-107.81e-10
orderPasteurellales-0.1452.84e-108.48e-10
familyPasteurellaceae-0.1452.84e-108.48e-10
speciesHaemophilus_parainfluenzae-0.1452.99e-108.88e-10
genusTuricibacter0.1444.02e-101.19e-09
speciesAcidaminococcus_unclassified0.1434.92e-101.44e-09
speciesClostridium_sp_L2_500.1435.46e-101.59e-09
genusAcidaminococcaceae_unclassified0.1426.67e-101.93e-09
speciesVeillonella_unclassified-0.1419.49e-102.73e-09
speciesBacteroides_oleiciplenus-0.141.33e-093.8e-09
speciesMegamonas_rupellensis-0.1391.66e-094.72e-09
genusVeillonella-0.1382.05e-095.79e-09
speciesTuricibacter_sanguinis0.1372.88e-098.09e-09
speciesAnaerostipes_unclassified-0.1354.22e-091.18e-08
speciesRoseburia_hominis0.1328.9e-092.47e-08
familyOxalobacteraceae0.1321.04e-082.87e-08
speciesEggerthella_unclassified-0.1311.2e-083.29e-08
speciesLachnospiraceae_bacterium_5_1_63FAA0.131.8e-084.91e-08
genusSiphoviridae_noname0.1292e-085.43e-08
speciesLactobacillus_casei_paracasei0.1292.1e-085.66e-08
orderCaudovirales0.1292.3e-086.17e-08
genusOxalobacter0.1282.54e-086.74e-08
speciesOxalobacter_formigenes0.1282.54e-086.74e-08
genusAcidaminococcus0.1273.58e-089.44e-08
speciesTuricibacter_unclassified0.1273.74e-089.81e-08
speciesParabacteroides_goldsteinii-0.1265.08e-081.32e-07
speciesVeillonella_parvula-0.1247.72e-082e-07
orderLactobacillales0.1221.27e-073.28e-07
genusEnterobacter-0.1221.32e-073.39e-07
speciesCoprococcus_eutactus0.1221.35e-073.44e-07
genusEggerthella-0.1211.49e-073.78e-07
classBacilli0.121.74e-074.39e-07
familyClostridiales_noname-0.121.75e-074.39e-07
genusLactococcus0.121.77e-074.42e-07
speciesBacteroides_vulgatus-0.1192.3e-075.71e-07
speciesLachnospiraceae_bacterium_2_1_58FAA-0.1173.61e-078.92e-07
speciesClostridium_clostridioforme-0.1174.1e-071.01e-06
speciesEnterobacter_cloacae-0.1164.65e-071.14e-06
speciesLactobacillus_rhamnosus0.1165.37e-071.31e-06
speciesStreptococcus_parasanguinis0.1165.49e-071.33e-06
genusParabacteroides-0.1156.37e-071.53e-06
genusActinomyces0.1156.57e-071.57e-06
familyActinomycetaceae0.1156.59e-071.57e-06
genusClostridium-0.1147.33e-071.74e-06
familyClostridiaceae-0.1147.43e-071.75e-06
speciesRuminococcus_champanellensis0.1139.61e-072.26e-06
speciesRuminococcus_torques0.1121.18e-062.76e-06
orderViruses_noname0.1121.2e-062.79e-06
speciesParaprevotella_unclassified0.1111.58e-063.66e-06
genusParaprevotella0.111.78e-064.1e-06
speciesParaprevotella_clara0.111.85e-064.24e-06
speciesPropionibacterium_freudenreichii0.1092.25e-065.13e-06
speciesMitsuokella_multacida0.1073.34e-067.58e-06
speciesRoseburia_unclassified0.1073.68e-068.31e-06
speciesCampylobacter_concisus-0.1073.81e-068.56e-06
genusAggregatibacter-0.1064.69e-061.05e-05
speciesLactobacillus_salivarius-0.1055.58e-061.24e-05
speciesCitrobacter_freundii-0.1055.62e-061.25e-05
genusGordonibacter0.1055.72e-061.26e-05
speciesGordonibacter_pamelaeae0.1055.72e-061.26e-05
speciesAlistipes_sp_AP110.1038.68e-061.9e-05
speciesVeillonella_dispar-0.1029e-061.96e-05
speciesBacteroides_massiliensis-0.1029.81e-062.12e-05
speciesRuminococcus_callidus0.1021.08e-052.33e-05
genusPhascolarctobacterium0.1011.11e-052.37e-05
speciesPhascolarctobacterium_succinatutens0.1011.11e-052.37e-05
speciesLactobacillus_delbrueckii0.1011.18e-052.51e-05
genusCitrobacter-0.1011.22e-052.58e-05
speciesCitrobacter_unclassified-0.1011.27e-052.68e-05
speciesParaprevotella_xylaniphila0.1011.3e-052.73e-05
speciesDesulfovibrio_desulfuricans0.11.46e-053.05e-05
genusPropionibacterium0.11.48e-053.08e-05
speciesLachnospiraceae_bacterium_8_1_57FAA0.11.52e-053.15e-05
speciesLachnospiraceae_bacterium_2_1_46FAA-0.11.57e-053.24e-05
speciesAggregatibacter_segnis-0.0991.76e-053.61e-05
speciesBacteroides_finegoldii-0.0982.05e-054.19e-05
speciesParabacteroides_unclassified-0.0982.22e-054.52e-05
genusPrevotella-0.0972.68e-055.43e-05
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0972.77e-055.59e-05
genusDesulfovibrio0.0972.79e-055.6e-05
speciesStreptococcus_mutans0.0963.07e-056.14e-05
speciesRuminococcus_lactaris0.0963.21e-056.39e-05
familyPropionibacteriaceae0.0963.24e-056.43e-05
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0944.82e-059.52e-05
speciesDialister_succinatiphilus0.0935.2e-050.000102
genusFaecalibacterium0.0936.04e-050.000118
speciesFaecalibacterium_prausnitzii0.0936.04e-050.000118
speciesMegamonas_hypermegale-0.0927.31e-050.000142
speciesKlebsiella_unclassified-0.0927.38e-050.000143
speciesClostridium_bartlettii0.0917.79e-050.00015
speciesBacteroides_pectinophilus0.0918.78e-050.000168
genusPantoea-0.099.81e-050.000187
speciesPantoea_unclassified-0.099.81e-050.000187
genusMethanosphaera0.0890.0001090.000206
speciesMethanosphaera_stadtmanae0.0890.0001090.000206
speciesFusobacterium_nucleatum-0.0890.0001130.000212
speciesLactococcus_phage_P6800.0890.0001240.000232
classNegativicutes0.0880.000150.000279
orderSelenomonadales0.0880.000150.000279
genusMegasphaera-0.0850.0002160.0004
genusPeptostreptococcaceae_noname0.0850.0002210.000407
speciesPorphyromonas_asaccharolytica0.0840.0002640.000485
speciesMegamonas_funiformis-0.0840.0002730.000499
speciesPeptostreptococcaceae_noname_unclassified0.0830.0003250.000592
speciesErysipelotrichaceae_bacterium_6_1_450.0830.0003450.000626
speciesBacteroides_plebeius-0.0820.0003790.000685
speciesEnterobacter_aerogenes-0.0820.0003840.000692
speciesCoriobacteriaceae_bacterium_phI0.0820.0003990.000716
speciesBifidobacterium_pseudocatenulatum-0.0810.000480.000858
familyPeptostreptococcaceae0.0810.0004870.000867
orderActinomycetales0.080.0005480.000972
speciesVeillonella_atypica-0.080.000550.000972
genusCoriobacteriaceae_noname0.0780.0007610.00134
speciesBacteroides_cellulosilyticus-0.0770.0008040.00141
genusButyricimonas-0.0770.000810.00141
speciesButyricimonas_synergistica-0.0770.000810.00141
speciesPrevotella_copri-0.0770.0008490.00147
speciesOdoribacter_unclassified0.0760.0009930.00172
genusBurkholderiales_noname-0.0760.001010.00173
speciesBurkholderiales_bacterium_1_1_47-0.0760.001010.00173
familyBurkholderiales_noname-0.0760.001030.00176
speciesDesulfovibrio_piger0.0760.001080.00184
orderPseudomonadales0.0750.001130.00192
speciesBacteroides_sp_3_1_19-0.0740.001290.00218
genusPorphyromonas0.0740.001450.00244
speciesAlistipes_onderdonkii0.0740.001450.00244
speciesBlautia_producta-0.0730.001540.00258
speciesDorea_unclassified-0.0730.001680.0028
speciesAlistipes_sp_HGB50.0730.001690.00281
speciesStreptococcus_infantarius-0.0720.001940.00321
speciesParabacteroides_johnsonii-0.070.002360.00389
speciesBacteroides_salanitronis0.070.002380.00391
speciesHaemophilus_sputorum-0.070.002550.00418
speciesLachnospiraceae_bacterium_5_1_57FAA-0.070.002560.00418
orderBacillales0.070.002580.0042
genusParvimonas0.070.00260.00422
familyStreptococcaceae0.070.002630.00425
speciesParvimonas_unclassified0.0690.002650.00427
speciesLactobacillus_acidophilus0.0690.002690.00432
speciesGemella_morbillorum0.0690.002750.0044
genusStreptococcus0.0690.002820.0045
speciesStreptococcus_pasteurianus-0.0680.003380.00537
speciesHaemophilus_paraphrohaemolyticus-0.0670.003530.00559
speciesBifidobacterium_dentium0.0650.004840.00764
genusParasutterella-0.0650.005110.00801
speciesParasutterella_excrementihominis-0.0650.005110.00801
genusBilophila-0.0640.005320.00831
familyBacillales_noname0.0640.005750.00893
genusGemella0.0640.005750.00893
speciesBilophila_unclassified-0.0640.005840.00904
speciesLactococcus_phage_phi70.0630.006020.00929
speciesClostridium_perfringens-0.0630.006110.00939
speciesEscherichia_unclassified-0.0620.007670.0118
genusCampylobacter-0.0610.008750.0134
speciesStreptococcus_vestibularis0.060.009380.0143
speciesBacteroides_sp_4_3_47FAA0.0590.01050.0159
speciesErysipelotrichaceae_bacterium_2_2_44A0.0590.01090.0165
speciesOdoribacter_laneus0.0590.01120.0169
speciesCoprobacillus_sp_D60.0580.01160.0174
speciesParabacteroides_distasonis-0.0580.01240.0186
speciesAlistipes_putredinis0.0570.01410.0211
familyCampylobacteraceae-0.0570.01440.0214
speciesAnaerotruncus_colihominis-0.0560.01580.0235
speciesStreptococcus_sanguinis0.0550.01690.025
speciesLactobacillus_amylovorus0.0550.01750.0258
genusActinobacillus-0.0550.01810.0265
speciesActinobacillus_unclassified-0.0550.01810.0265
speciesAlistipes_unclassified0.0550.01820.0266
speciesParabacteroides_merdae0.0540.01850.027
speciesOscillibacter_unclassified0.0540.01990.0289
speciesSubdoligranulum_sp_4_3_54A2FAA0.0540.020.029
speciesEnterococcus_faecium0.0520.02450.0354
speciesRoseburia_intestinalis0.0520.02470.0355
familyClostridiales_Family_XI_Incertae_Sedis0.0520.02540.0364
speciesSutterella_parvirubra-0.0510.02680.0383
genusSolobacterium0.0510.02880.0409
speciesSolobacterium_moorei0.0510.02880.0409
speciesBilophila_wadsworthia-0.050.03010.0427
speciesHoldemania_filiformis0.050.0310.0438
speciesAcidaminococcus_fermentans0.0490.0330.0465
speciesStreptococcus_phage_Sfi210.0490.03320.0466
speciesAlistipes_indistinctus0.0490.03380.0473
genusProteus-0.0480.03650.051
genusLeuconostoc0.0480.03690.0514
speciesEubacterium_sp_3_1_31-0.0470.04010.0557
classDeltaproteobacteria-0.0470.04260.0586
orderDesulfovibrionales-0.0470.04260.0586
familyDesulfovibrionaceae-0.0470.04260.0586
classEpsilonproteobacteria-0.0470.04360.0596
orderCampylobacterales-0.0470.04360.0596
speciesBacteroides_clarus-0.0460.04770.0651
speciesAcidaminococcus_intestini0.0450.0530.0719
familyOscillospiraceae0.0450.05320.0719
genusOscillibacter0.0450.05320.0719
speciesBacteroides_uniformis-0.0450.05370.0724
familyPorphyromonadaceae-0.0450.05420.0729
genusBlautia0.0440.05570.0747
familyStaphylococcaceae0.0440.060.0802
speciesLactococcus_phage_bIL670.0430.06470.0863
speciesHoldemania_sp_AP2-0.0430.06530.0868
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0430.06590.0874
familyVeillonellaceae0.0420.06730.089
speciesRuminococcus_sp_JC3040.0420.06910.0911
familySuccinivibrionaceae0.0420.06960.0915
speciesCollinsella_tanakaei-0.0420.0720.0944
speciesLactococcus_garvieae-0.0420.07240.0947
speciesPorphyromonas_uenonis0.0410.0770.1
speciesStreptococcus_salivarius0.040.08150.106
genusStaphylococcus0.040.08260.107
speciesClostridium_sp_ATCC_BAA_442-0.040.08510.11
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0390.08980.116
genusSuccinatimonas0.0380.09660.124
speciesSuccinatimonas_hippei0.0380.09660.124
speciesWeissella_confusa-0.0380.09670.124
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0380.1010.129
genusPyramidobacter-0.0370.110.14
speciesPyramidobacter_piscolens-0.0370.110.14
speciesLactobacillus_gasseri0.0370.1140.144
phylumSynergistetes-0.0360.1210.151
classSynergistia-0.0360.1210.151
orderSynergistales-0.0360.1210.151
familySynergistaceae-0.0360.1210.151
speciesLactobacillus_oris-0.0360.1240.155
genusWeissella-0.0350.1270.158
speciesBacteroides_caccae-0.0330.150.186
genusRoseburia-0.0330.1510.187
genusClostridiaceae_noname-0.0330.1590.196
speciesClostridiaceae_bacterium_JC118-0.0330.1590.196
speciesProteus_mirabilis-0.0320.160.197
speciesBacteroides_barnesiae0.0320.1630.2
speciesEnterobacteria_phage_HK544-0.0310.1740.212
speciesMegasphaera_elsdenii0.0310.1740.212
speciesEggerthella_sp_1_3_56FAA0.0310.1760.214
speciesCollinsella_intestinalis-0.0310.1780.216
speciesBifidobacterium_breve0.0310.1810.219
speciesLactococcus_phage_jm20.0310.1850.223
speciesErysipelotrichaceae_bacterium_3_1_53-0.030.1880.226
speciesLactobacillus_plantarum0.030.1930.232
speciesBacteroides_coprophilus0.030.2010.241
genusMorganella-0.030.2020.241
speciesMorganella_morganii-0.030.2020.241
familySutterellaceae0.0290.2040.243
speciesLactobacillus_reuteri0.0270.240.285
speciesHoldemania_unclassified0.0270.2460.291
genusOdoribacter0.0260.2550.301
speciesPeptostreptococcus_anaerobius0.0260.2560.301
familyViruses_noname0.0260.2580.302
genusViruses_noname0.0260.2580.302
speciesBacteroides_sp_1_1_60.0250.2790.326
genusEnterococcus0.0250.280.326
speciesStreptococcus_anginosus-0.0250.290.337
speciesLactobacillus_sanfranciscensis0.0240.2970.344
familyEnterococcaceae0.0240.3020.349
familyRikenellaceae0.0230.3120.359
genusAlistipes0.0230.3120.359
speciesKlebsiella_oxytoca-0.0230.3260.373
speciesOscillibacter_sp_KLE_17450.0230.3260.373
speciesStreptococcus_mitis_oralis_pneumoniae-0.0230.330.377
speciesOdoribacter_splanchnicus0.0220.3310.377
speciesWeissella_cibaria-0.0210.3540.403
speciesCollinsella_unclassified-0.0210.3630.411
speciesCoprobacillus_sp_29_10.0210.3630.411
speciesAlistipes_shahii0.0210.3760.425
genusRothia0.020.3830.431
familyMicrococcaceae0.020.3890.437
speciesBacteroides_coprocola-0.020.3950.443
speciesStreptococcus_gordonii0.0190.40.446
speciesPeptostreptococcus_stomatis-0.0190.40.446
speciesBacteroides_eggerthii0.0190.4070.453
speciesLactococcus_phage_936_sensu_lato0.0190.4220.469
familyMyoviridae-0.0180.4260.472
genusTunalikevirus-0.0180.4280.473
speciesMegasphaera_unclassified-0.0180.4370.482
speciesBacteroides_faecis-0.0180.4450.49
genusPeptostreptococcus0.0180.4460.49
familyPrevotellaceae-0.0160.4890.536
speciesRothia_mucilaginosa0.0160.4950.539
genusPeptoniphilus0.0160.4960.539
genusSlackia0.0160.4960.539
speciesPrevotella_bivia-0.0160.5030.546
speciesLeuconostoc_lactis-0.0150.5160.559
speciesSlackia_piriformis0.0150.5230.565
speciesKlebsiella_phage_KP36-0.0130.5610.604
speciesOscillibacter_sp_KLE_1728-0.0130.5620.604
speciesEubacterium_eligens-0.0130.5640.605
speciesParabacteroides_sp_20_30.0130.5670.607
speciesBacteroides_sp_2_1_22-0.0130.5850.625
speciesRoseburia_inulinivorans0.0120.6160.656
familyLeuconostocaceae0.0110.6340.674
familyPodoviridae-0.0110.6450.684
orderAeromonadales0.010.6550.693
speciesLactobacillus_crispatus0.0090.6850.723
speciesLactobacillus_vaginalis0.0090.6920.728
speciesClostridium_spiroforme0.0090.6940.728
speciesParabacteroides_sp_D130.0090.6960.728
speciesLactobacillus_mucosae-0.0090.6960.728
genusSutterellaceae_unclassified-0.0080.7240.756
genusButyricicoccus0.0080.7350.763
speciesButyricicoccus_pullicaecorum0.0080.7350.763
speciesBacteroides_dorei-0.0080.7360.763
orderBurkholderiales0.0070.7770.804
speciesLactobacillus_fermentum0.0050.8140.841
speciesEnterococcus_faecalis0.0050.8220.847
speciesEggerthella_lenta-0.0040.8470.871
genusLachnospiraceae_noname0.0040.8530.875
speciesClostridium_sp_KLE_17550.0040.8660.887
speciesEubacterium_dolichum-0.0030.8910.909
speciesStreptococcus_australis-0.0030.8920.909
speciesKlebsiella_sp_MS_92_30.0020.9160.932
genusLambdalikevirus0.0020.9250.939
genusHoldemania0.0020.930.942
classBetaproteobacteria0.0020.9350.945
speciesStreptococcus_lutetiensis-0.0010.9610.969
speciesEubacterium_limosum-0.0010.9720.977
genusMyoviridae_noname-0.0010.9730.977
speciesAlistipes_finegoldii0.0010.9770.979
speciesBacteroides_fluxus0.0010.9810.981
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Ulcerative colitisSpain78660.005230681381740.003045927780630.001205914158046502.14422
Liver cirrhosisChina1201145.42563526194e-050.0007759572828610.00266277446909869629.2116
Rheumatoid arthritisChina127980.002314856317920.003579007075250.038717027402426298.76713
ObesityDenmark1691230.00224303288890.002555632369580.3187149318641456547.8939
Type II diabetesSweden53920.008041213920320.01199237652360.3197822725271103637.3722
Type II diabetesChina1831850.005532641914470.0005456324804390.4101198981781909763.1118
Type II diabetesDenmark752770.002744483258070.002380451884330.694876904432471681.0175
Colorectal cancerAustria64350.02363335927530.01705634186480.7379093753152390480.877
Crohns diseaseSpain17660.004313145673210.003045927780630.8714347605852865095.2618
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382