MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-03-19 08:49:57 PST
Job id & description: 1772, dluni_ref.igc.80.1
Query type: protein
Count queries & homologs: 100, 100
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
T2D-83A_GL005525142530CompleteK12063COG3451unknownunknown100.0100.0100.0
O2.UC41-1_GL0026616135688CompleteK00936COG0642unknownunknown100.0100.0100.0
MH0200_GL0062508153836CompleteK01447COG0791;COG0739FirmicutesBlautia100.0100.0100.0
O2.UC26-0_GL0029645158451CompleteK01463COG0791;COG0739FirmicutesEubacterium100.0100.0100.0
T2D-20A_GL0022109158604CompleteK01463COG0791;COG0739FirmicutesCoprococcus100.0100.0100.0
HT14A_GL0071283161020CompleteK01463COG0791;COG0739FirmicutesRuminococcus100.0100.0100.0
MH0154_GL0075933160703CompleteK01463COG0791;COG0739FirmicutesEubacterium100.0100.0100.0
159510762-stool2_revised161033CompleteK01463COG0791;COG0739FirmicutesEubacterium100.0100.0100.0
DLF013_GL0004498160961CompleteK01463COG0791;COG0739FirmicutesEubacterium100.0100.0100.0
DOM003_GL0020540160968CompleteK01463COG0791;COG0739FirmicutesEubacterium100.0100.0100.0
411469.EUBHAL_00425161072CompleteK01463COG0791;COG0739FirmicutesEubacterium100.0100.0100.0
SZEY-104A_GL0017661161022CompleteK01463COG0791;COG0739FirmicutesEubacterium100.0100.0100.0
T2D-108A_GL0015529160997CompleteK01463COG0791;COG0739Firmicutesunknown100.0100.0100.0
V1.CD3-0-PT_GL0087180163182CompleteK01463COG0791;COG0739FirmicutesClostridium100.0100.0100.0
MH0239_GL0063442163019CompleteK01463COG0791;COG0739FirmicutesClostridium100.0100.0100.0
MH0227_GL0046438164006CompleteK01447COG0791;COG0739unknownunknown100.0100.0100.0
V1.CD15-3_GL0067130164198CompleteK01463COG0791;COG0739unknownunknown100.0100.0100.0
O2.UC2-2_GL0122175165693CompleteK01463COG0791;COG0739unknownunknown100.0100.0100.0
T2D-19A_GL0090293165849CompleteK01463COG0791;COG0739unknownunknown100.0100.0100.0
MH0150_GL0032013179212CompleteK01417COG0791;COG0739unknownunknown100.0100.0100.0
765640925-stool1_revised183775CompleteK01463COG0791;COG0739Firmicutesunknown100.0100.0100.0
MH0274_GL0026257171052CompleteK01447COG0791;COG3103FirmicutesCoprococcus100.0100.0100.0
V1.UC25-0_GL0084271177852CompleteK01447COG0791;COG3103FirmicutesCoprococcus100.0100.0100.0
O2.UC48-0_GL0212691184741CompleteK01447COG0791;COG3103FirmicutesCoprococcus100.0100.0100.0
MH0222_GL0038935193650CompleteK06306bactNOG34558unknownunknown100.0100.0100.0
O2.UC53-0_GL0162372202464CompleteK01447COG0791;COG3103FirmicutesCoprococcus100.0100.0100.0
MH0146_GL0004391194403CompleteK06306bactNOG34558unknownunknown100.0100.0100.0
MH0436_GL0076685200930CompleteK06306bactNOG34558unknownunknown100.0100.0100.0
MH0211_GL0165103202223CompleteK06306bactNOG34558unknownunknown100.0100.0100.0
SZEY-75A_GL0060350209164CompleteK06306COG1388unknownunknown100.0100.0100.0
MH0107_GL0040885232247CompleteK01447COG0739unknownunknown100.0100.0100.0
MH0396_GL0112978234226CompleteK01447COG0739FirmicutesBlautia100.0100.0100.0
158802708-stool2_revised236424Lack 5'-endK01447COG0739FirmicutesBlautia100.0100.0100.0
V1.FI22_GL0163478237175CompleteK01447COG0739FirmicutesBlautia100.0100.0100.0
MH0131_GL0024571237565CompleteK01447COG0739Firmicutesunknown100.0100.0100.0
MH0198_GL0135499226319CompleteK01447COG0791unknownunknown100.0100.0100.0
V1.CD46-0_GL0143652242708Lack 5'-endK01447COG0791;COG3103FirmicutesCoprococcus100.0100.0100.0
638754422-stool2_revised261136CompleteK06306bactNOG34558unknownunknown100.0100.0100.0
V1.FI26_GL0259091274369Lack 5'-endK01447COG0791;COG3103unknownunknown100.0100.0100.0
411462.DORLON_01869280073CompleteK01447COG0791;COG3103FirmicutesDorea100.0100.0100.0
MH0388_GL0042047304587CompleteK01447COG0739Firmicutesunknown100.0100.0100.0
MH0360_GL0002764288686CompleteK01447COG0791FirmicutesCoprococcus100.0100.0100.0
BGI-27A_GL0010987282193CompleteK06306bactNOG34558unknownunknown100.0100.0100.0
O2.CD2-0-PT_GL0015683309274CompleteK01447bactNOG11867Firmicutesunknown100.0100.0100.0
MH0014_GL0042651308702Lack 5'-endK01447COG0739Firmicutesunknown100.0100.0100.0
470146.COPCOM_02902297346CompleteK01447COG0791FirmicutesCoprococcus100.0100.0100.0
MH0286_GL0010461290928Lack 3'-endunknownbactNOG34558unknownunknown100.0100.0100.0
MH0243_GL0077674347013CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0003_GL0019877348002CompleteK01447COG0791unknownunknown100.0100.0100.0
V1.CD8-0-PN_GL0047955320337CompleteK01447COG0791unknownunknown100.0100.0100.0
556261.HMPREF0240_00042363317CompleteK01447COG0791;COG3103FirmicutesClostridium100.0100.0100.0
DOF008_GL0041795367467CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
V1.CD54-0_GL0033930378939CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
MH0267_GL0119926404088CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0359_GL0045722419755CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0442_GL0066863421650CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0104_GL0086725419272CompleteK01447COG0791unknownunknown100.0100.0100.0
V1.UC51-4_GL0040424423806CompleteK01447COG0791unknownunknown100.0100.0100.0
SZEY-38A_GL0008441430551CompleteK01447COG0791unknownunknown100.0100.0100.0
T2D-83A_GL0015373429012CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0220_GL0147178433064CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0199_GL0036039434865CompleteK01447COG0791unknownunknown100.0100.0100.0
O2.UC7-0_GL0128032435597CompleteK01447COG0791unknownunknown100.0100.0100.0
T2D-57A_GL0074272436125CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0425_GL0023149435347CompleteK01447COG0791unknownunknown100.0100.0100.0
763961826-stool2_revised436271CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0161_GL0094129434767CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0259_GL0113008436877CompleteK01447COG0791unknownunknown100.0100.0100.0
N052A_GL0033150436007CompleteK01447COG0791unknownunknown100.0100.0100.0
O2.UC6-1_GL0126229435593CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0376_GL0092804435233CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0404_GL0070158435295CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0412_GL0196589438900CompleteK01447COG0791unknownunknown100.0100.0100.0
T2D-53A_GL0073711437911CompleteK01447COG0791unknownunknown100.0100.0100.0
V1.CD18-3_GL0045388437449CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0383_GL0126867435253CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0442_GL0098125397804Lack 5'-endK01447COG0791unknownunknown100.0100.0100.0
DLM021_GL0058892443266CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0192_GL0121066446055CompleteK01447COG0791unknownunknown100.0100.0100.0
O2.UC53-2_GL0104837442965CompleteK01447COG0791unknownunknown100.0100.0100.0
O2.UC40-1_GL0142320406156Lack 3'-endunknownCOG0791unknownunknown100.0100.0100.0
MH0396_GL0144937412745Lack 3'-endK13694COG0791unknownunknown100.0100.0100.0
MH0381_GL0053113452309CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0442_GL0228605423430CompleteK01447COG0791unknownunknown100.0100.0100.0
V1.CD32-0_GL0029021456515CompleteK01447NOG244109FirmicutesClostridium100.0100.0100.0
159632143-stool1_revised457079CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0009_GL0002096459185CompleteK01447NOG244109FirmicutesClostridium100.0100.0100.0
MH0192_GL0152365459537CompleteK01447COG0791FirmicutesClostridium100.0100.0100.0
MH0391_GL0177847459925CompleteK01447NOG244109Firmicutesunknown100.0100.0100.0
V1.CD35-1_GL0068955460317CompleteK01447NOG244109Firmicutesunknown100.0100.0100.0
MH0014_GL0050779461092CompleteK01447NOG244109FirmicutesClostridium100.0100.0100.0
MH0373_GL0141692461803CompleteK01447COG0791FirmicutesClostridium100.0100.0100.0
MH0060_GL0067973459282CompleteK01447NOG244109FirmicutesClostridium100.0100.0100.0
O2.UC43-1_GL0007875462141CompleteK01447NOG244109FirmicutesClostridium100.0100.0100.0
MH0062_GL0020368438256CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
MH0191_GL0011643446048CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0117_GL0018107467118CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0396_GL0164503444556CompleteK01447COG0791unknownunknown100.0100.0100.0
V1.FI26_GL0017749462368CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0441_GL0147665465842CompleteK01447COG0791unknownunknown100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classClostridia0.6324.91e-2091.16e-206
orderClostridiales0.6324.92e-2091.16e-206
speciesRuminococcus_obeum0.61.25e-1831.97e-181
classBacteroidia-0.5991.19e-1829.6e-181
orderBacteroidales-0.5991.19e-1829.6e-181
phylumBacteroidetes-0.5991.22e-1829.6e-181
speciesEubacterium_hallii0.5878.64e-1745.83e-172
genusDorea0.5869.72e-1735.73e-171
phylumFirmicutes0.5861.28e-1726.71e-171
orderCoriobacteriales0.5759.89e-1654.24e-163
familyCoriobacteriaceae0.5759.89e-1654.24e-163
speciesRuminococcus_sp_5_1_39BFAA0.5581.67e-1536.57e-152
familyRuminococcaceae0.5425.41e-1431.96e-141
genusRuminococcus0.5276.51e-1342.19e-132
speciesAnaerostipes_hadrus0.5064.21e-1221.32e-120
speciesDorea_longicatena0.5011.34e-1193.95e-118
phylumActinobacteria0.4981.12e-1172.94e-116
classActinobacteria0.4981.12e-1172.94e-116
speciesCoprococcus_comes0.4842.38e-1105.91e-109
speciesDorea_formicigenerans0.482.85e-1086.73e-107
familyLachnospiraceae0.4791.14e-1072.56e-106
speciesRuminococcus_torques0.4761.78e-1063.82e-105
genusAnaerostipes0.4763.74e-1067.68e-105
genusBlautia0.4717.28e-1041.43e-102
genusCoprococcus0.4552.91e-965.49e-95
speciesLachnospiraceae_bacterium_5_1_63FAA0.4485.18e-939.4e-92
familyEubacteriaceae0.4459.39e-921.64e-90
genusEubacterium0.4451.73e-912.92e-90
speciesEubacterium_ramulus0.4348.44e-871.37e-85
speciesCoprococcus_catus0.4191.43e-802.25e-79
speciesStreptococcus_thermophilus0.4186.62e-801.01e-78
genusAdlercreutzia0.4142.33e-783.33e-77
speciesAdlercreutzia_equolifaciens0.4142.33e-783.33e-77
genusSubdoligranulum0.4092.08e-762.89e-75
speciesSubdoligranulum_unclassified0.4071.19e-751.6e-74
genusCollinsella0.4029.64e-741.26e-72
speciesCollinsella_aerofaciens0.3979.71e-721.24e-70
orderBifidobacteriales0.3826.97e-668.44e-65
familyBifidobacteriaceae0.3826.97e-668.44e-65
genusBifidobacterium0.3794.79e-655.65e-64
speciesClostridium_leptum0.3781.7e-641.96e-63
genusLachnospiraceae_noname0.3773.43e-643.85e-63
familyBacteroidaceae-0.3731.08e-621.16e-61
genusBacteroides-0.3731.08e-621.16e-61
genusGordonibacter0.3572.06e-572.11e-56
speciesGordonibacter_pamelaeae0.3572.06e-572.11e-56
speciesBifidobacterium_longum0.3491.55e-541.56e-53
speciesEubacterium_rectale0.3344.67e-504.59e-49
genusPrevotella-0.329.13e-468.79e-45
familyActinomycetaceae0.3177.35e-456.94e-44
genusActinomyces0.3121.35e-431.25e-42
speciesBifidobacterium_adolescentis0.314.8e-434.36e-42
speciesPrevotella_copri-0.3082.06e-421.83e-41
speciesErysipelotrichaceae_bacterium_21_30.3051.62e-411.42e-40
speciesEubacterium_siraeum0.3029.54e-418.19e-40
orderActinomycetales0.3011.79e-401.51e-39
speciesEggerthella_lenta0.2963.61e-392.99e-38
speciesRuminococcus_bromii0.291.66e-371.35e-36
familyStreptococcaceae0.2892.39e-371.91e-36
speciesKlebsiella_pneumoniae-0.2845.11e-364.02e-35
speciesBacteroides_stercoris-0.2839.44e-367.3e-35
genusStreptococcus0.2821.3e-359.9e-35
speciesBlautia_hydrogenotrophica0.2772.2e-341.65e-33
genusPseudoflavonifractor0.271.39e-321.01e-31
speciesPseudoflavonifractor_capillosus0.271.39e-321.01e-31
classBacilli0.271.59e-321.14e-31
orderLactobacillales0.2691.94e-321.37e-31
phylumVerrucomicrobia0.2678.01e-325.18e-31
classVerrucomicrobiae0.2678.01e-325.18e-31
orderVerrucomicrobiales0.2678.01e-325.18e-31
familyVerrucomicrobiaceae0.2678.01e-325.18e-31
genusAkkermansia0.2678.01e-325.18e-31
speciesAkkermansia_muciniphila0.2678.01e-325.18e-31
speciesBacteroides_thetaiotaomicron-0.2635.49e-313.5e-30
genusParabacteroides-0.2628.79e-315.53e-30
speciesLachnospiraceae_bacterium_3_1_46FAA0.2621.1e-306.83e-30
familyPrevotellaceae-0.2611.51e-309.26e-30
genusKlebsiella-0.2589.78e-305.92e-29
genusEggerthella0.2571.38e-298.25e-29
classErysipelotrichia0.2546.09e-293.51e-28
orderErysipelotrichales0.2546.09e-293.51e-28
familyErysipelotrichaceae0.2546.09e-293.51e-28
speciesStreptococcus_parasanguinis0.2538.79e-295e-28
speciesBacteroides_xylanisolvens-0.2531.11e-286.24e-28
genusHoldemania0.2496.99e-283.88e-27
phylumFusobacteria-0.2471.83e-279.82e-27
classFusobacteriia-0.2471.83e-279.82e-27
orderFusobacteriales-0.2471.83e-279.82e-27
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.2472.31e-271.23e-26
speciesLactococcus_lactis0.2472.7e-271.42e-26
phylumProteobacteria-0.2463.66e-271.9e-26
familyFusobacteriaceae-0.2456.76e-273.47e-26
classBetaproteobacteria-0.2422.4e-261.22e-25
genusFusobacterium-0.2414.57e-262.29e-25
speciesErysipelotrichaceae_bacterium_2_2_44A0.2372.9e-251.44e-24
speciesLachnospiraceae_bacterium_7_1_58FAA0.2373.32e-251.63e-24
speciesEggerthella_unclassified0.2365.1e-252.48e-24
orderBurkholderiales-0.2341.09e-245.25e-24
speciesBifidobacterium_animalis0.2322.52e-241.2e-23
speciesAnaerotruncus_unclassified0.2313.62e-241.71e-23
speciesErysipelotrichaceae_bacterium_6_1_450.2313.65e-241.71e-23
speciesPropionibacterium_freudenreichii0.2315.44e-242.52e-23
familySutterellaceae-0.2299.17e-244.2e-23
genusMegasphaera-0.2281.47e-236.67e-23
speciesHaemophilus_parainfluenzae-0.2264.38e-231.97e-22
phylumEuryarchaeota0.2264.62e-232.06e-22
genusHaemophilus-0.2257.66e-233.38e-22
genusMethanobrevibacter0.2258.52e-233.72e-22
speciesMethanobrevibacter_smithii0.2249.29e-234.02e-22
classMethanobacteria0.2222.89e-221.22e-21
orderMethanobacteriales0.2222.89e-221.22e-21
familyMethanobacteriaceae0.2222.89e-221.22e-21
orderPasteurellales-0.2223.08e-221.28e-21
familyPasteurellaceae-0.2223.08e-221.28e-21
genusLactococcus0.2214.29e-221.76e-21
speciesMegamonas_unclassified-0.225.85e-222.38e-21
genusMegamonas-0.226.27e-222.53e-21
speciesBacteroides_plebeius-0.2181.29e-215.16e-21
speciesLactobacillus_delbrueckii0.2171.86e-217.38e-21
speciesPrevotella_stercorea-0.2147.36e-212.89e-20
genusPropionibacterium0.2148.17e-213.19e-20
speciesFusobacterium_mortiferum-0.2149.22e-213.57e-20
genusErysipelotrichaceae_noname0.2089.68e-203.71e-19
familySiphoviridae0.2081.1e-194.19e-19
speciesHoldemania_filiformis0.2081.17e-194.42e-19
phylumViruses_noname0.2071.28e-194.76e-19
classViruses_noname0.2071.28e-194.76e-19
speciesStreptococcus_salivarius0.2071.75e-196.45e-19
speciesBacteroides_ovatus-0.2053.08e-191.13e-18
genusRuminococcaceae_noname0.2044.27e-191.54e-18
speciesRuminococcaceae_bacterium_D160.2044.27e-191.54e-18
speciesLactobacillus_casei_paracasei0.2044.53e-191.62e-18
genusAnaerotruncus0.22.94e-181.04e-17
genusSiphoviridae_noname0.1951.64e-175.78e-17
speciesStreptococcus_sanguinis0.1926.37e-172.23e-16
classGammaproteobacteria-0.191.21e-164.2e-16
speciesEubacterium_ventriosum0.1891.6e-165.51e-16
speciesBacteroides_vulgatus-0.1882.44e-168.35e-16
speciesFusobacterium_ulcerans-0.1882.87e-169.75e-16
orderBacillales0.1873.65e-161.23e-15
familyPropionibacteriaceae0.1864.35e-161.46e-15
familyBacillales_noname0.1864.54e-161.5e-15
genusGemella0.1864.54e-161.5e-15
orderCaudovirales0.1841.06e-153.47e-15
speciesButyrivibrio_unclassified0.1831.43e-154.65e-15
genusSolobacterium0.1796.17e-151.98e-14
speciesSolobacterium_moorei0.1796.17e-151.98e-14
familyPorphyromonadaceae-0.1787.66e-152.44e-14
genusButyrivibrio0.1752.35e-147.44e-14
speciesMegamonas_hypermegale-0.1735.14e-141.62e-13
speciesRuminococcus_lactaris0.1735.48e-141.71e-13
genusLeuconostoc0.1735.72e-141.78e-13
speciesClostridium_nexile-0.1711.01e-133.12e-13
genusEnterobacter-0.171.33e-134.08e-13
speciesPrevotella_buccae-0.171.45e-134.42e-13
speciesFusobacterium_varium-0.1691.72e-135.2e-13
speciesMegasphaera_unclassified-0.1682.45e-137.37e-13
speciesLachnospiraceae_bacterium_1_4_56FAA0.1673.22e-139.62e-13
speciesBacteroides_fragilis-0.1673.37e-131e-12
speciesEnterobacter_cloacae-0.1673.39e-131e-12
speciesMegamonas_rupellensis-0.1673.63e-131.06e-12
genusRothia0.1673.89e-131.13e-12
familyMicrococcaceae0.1664.84e-131.4e-12
speciesMegamonas_funiformis-0.1665.59e-131.61e-12
speciesLactobacillus_rhamnosus0.1641.11e-123.18e-12
speciesLactococcus_phage_P6800.1631.14e-123.24e-12
speciesParabacteroides_merdae-0.1631.43e-124.04e-12
familyPeptostreptococcaceae0.1622.08e-125.84e-12
speciesStreptococcus_vestibularis0.163.67e-121.02e-11
speciesEubacterium_cylindroides0.1594.17e-121.16e-11
genusOlsenella0.1578.81e-122.43e-11
speciesDialister_invisus0.1579.32e-122.56e-11
speciesBifidobacterium_catenulatum0.1561.2e-113.27e-11
genusFaecalibacterium0.1551.61e-114.34e-11
speciesFaecalibacterium_prausnitzii0.1551.61e-114.34e-11
speciesOlsenella_unclassified0.1551.69e-114.53e-11
speciesBacteroides_finegoldii-0.1542.01e-115.36e-11
genusPeptostreptococcaceae_noname0.1542.06e-115.46e-11
speciesSubdoligranulum_sp_4_3_54A2FAA0.1532.51e-116.62e-11
speciesRoseburia_hominis0.1533.22e-118.44e-11
genusC2likevirus0.1524.24e-111.11e-10
speciesC2likevirus_unclassified0.1515.06e-111.31e-10
familyClostridiales_Family_XI_Incertae_Sedis0.1515.56e-111.43e-10
orderEnterobacteriales-0.1515.8e-111.48e-10
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genusTuricibacter0.158.13e-112.04e-10
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speciesBacteroides_intestinalis-0.1247.61e-081.66e-07
speciesVeillonella_dispar-0.1221.18e-072.55e-07
phylumSynergistetes-0.1211.65e-073.51e-07
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familySynergistaceae-0.1211.65e-073.51e-07
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speciesVeillonella_atypica-0.1139.59e-071.89e-06
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genusBacteroidales_noname0.1121.09e-062.13e-06
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genusMitsuokella0.1111.58e-063.06e-06
speciesStreptococcus_australis0.111.68e-063.24e-06
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speciesLactobacillus_mucosae-0.1092.52e-064.8e-06
speciesBacteroides_coprocola-0.1073.6e-066.82e-06
speciesLachnospiraceae_bacterium_2_1_46FAA-0.1055.67e-061.07e-05
genusPeptostreptococcus0.1038.32e-061.56e-05
speciesCampylobacter_concisus-0.1021.03e-051.93e-05
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genusCoriobacteriaceae_noname0.1011.18e-052.19e-05
speciesBacteroides_caccae-0.1011.33e-052.46e-05
speciesBifidobacterium_dentium0.11.39e-052.56e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.11.41e-052.59e-05
speciesBacteroides_massiliensis-0.0991.66e-053.04e-05
speciesCoriobacteriaceae_bacterium_phI0.0991.78e-053.24e-05
speciesLactobacillus_salivarius-0.0991.89e-053.43e-05
genusParasutterella-0.0972.54e-054.58e-05
speciesParasutterella_excrementihominis-0.0972.54e-054.58e-05
speciesAlistipes_onderdonkii0.0972.62e-054.7e-05
speciesBacteroides_coprophilus-0.0963.06e-055.47e-05
speciesAnaerotruncus_colihominis0.0963.17e-055.65e-05
speciesLactococcus_phage_jm20.0944.53e-058.04e-05
speciesGemella_morbillorum0.0944.68e-058.26e-05
genusPeptoniphilus0.0944.69e-058.26e-05
speciesBacteroides_sp_3_1_19-0.0944.71e-058.26e-05
speciesAggregatibacter_segnis-0.0935.28e-059.23e-05
genusAggregatibacter-0.0926.4e-050.000111
speciesStreptococcus_mitis_oralis_pneumoniae0.0927.37e-050.000128
speciesBacteroides_oleiciplenus-0.0917.47e-050.000129
speciesCoprococcus_sp_ART55_10.099.8e-050.000169
speciesRoseburia_intestinalis0.099.82e-050.000169
speciesLactococcus_phage_phi70.090.0001010.000173
speciesFusobacterium_nucleatum-0.0890.0001210.000206
genusButyricimonas-0.0880.0001390.000235
speciesButyricimonas_synergistica-0.0880.0001390.000235
speciesCoprobacillus_sp_D60.0880.0001460.000246
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speciesPeptostreptococcus_anaerobius0.0860.0002050.000341
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speciesWeissella_confusa-0.0850.0002230.000368
genusCampylobacter-0.0850.0002420.000398
genusClostridiaceae_noname0.0840.0002580.000421
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speciesErysipelotrichaceae_bacterium_3_1_530.0840.0002790.000454
speciesLachnospiraceae_bacterium_8_1_57FAA0.0840.0002810.000456
speciesAlistipes_unclassified0.0830.0003050.000493
speciesBacteroides_salyersiae-0.0830.0003390.000546
familyCampylobacteraceae-0.0830.0003440.000552
speciesCollinsella_tanakaei-0.0820.0003640.000582
speciesAcidaminococcus_intestini-0.0820.0003840.000612
genusPantoea-0.0820.0004090.000648
speciesPantoea_unclassified-0.0820.0004090.000648
speciesAcidaminococcus_fermentans-0.0820.0004150.000655
speciesEubacterium_sp_3_1_310.0810.0004290.000675
speciesMegasphaera_elsdenii-0.080.0004990.000782
genusPorphyromonas0.080.0005340.000835
speciesLactobacillus_plantarum0.080.0005490.000855
genusCoprobacter0.0790.0006550.00101
speciesCoprobacter_fastidiosus0.0790.0006550.00101
familyLeuconostocaceae0.0780.000720.00111
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speciesCitrobacter_freundii-0.0770.0008310.00127
familyStaphylococcaceae0.0760.0009550.00146
speciesRuminococcus_gnavus-0.0750.00110.00167
speciesStreptococcus_infantarius-0.0750.001180.00179
speciesMitsuokella_multacida-0.0740.001380.00209
genusStaphylococcus0.0740.001430.00216
speciesEubacterium_biforme0.0740.001440.00216
genusBurkholderiales_noname-0.0710.002030.00303
speciesBurkholderiales_bacterium_1_1_47-0.0710.002030.00303
familyBurkholderiales_noname-0.0710.002150.0032
genusCitrobacter-0.0710.002260.00335
speciesOscillibacter_unclassified0.070.00230.0034
familyOscillospiraceae0.0690.002730.00401
genusOscillibacter0.0690.002730.00401
speciesLactobacillus_gasseri0.0690.002980.00437
speciesKlebsiella_unclassified-0.0680.003120.00456
genusActinobacillus-0.0680.003210.00466
speciesActinobacillus_unclassified-0.0680.003210.00466
genusMethanosphaera0.0680.003470.00501
speciesMethanosphaera_stadtmanae0.0680.003470.00501
speciesCitrobacter_unclassified-0.0670.003530.00508
genusRoseburia0.0670.003560.00511
genusFlavonifractor-0.0670.003820.00545
speciesFlavonifractor_plautii-0.0670.003820.00545
orderAeromonadales-0.0660.004070.00579
speciesClostridium_sp_KLE_17550.0660.004380.00621
genusWeissella-0.0660.004480.00633
speciesRoseburia_unclassified0.0650.004610.0065
speciesEubacterium_limosum0.0650.004670.00656
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speciesDesulfovibrio_piger-0.0650.005120.00715
speciesAnaerostipes_unclassified-0.0650.005150.00717
speciesEnterococcus_faecalis0.0630.006550.00909
speciesPorphyromonas_asaccharolytica0.0610.008080.0112
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genusOdoribacter-0.0590.0110.0151
speciesButyrivibrio_crossotus0.0590.01120.0154
speciesCoprococcus_eutactus0.0580.01240.017
speciesLactococcus_phage_936_sensu_lato0.0570.01310.0179
speciesBifidobacterium_pseudocatenulatum-0.0570.01360.0185
speciesBacteroides_pectinophilus0.0560.01460.0198
genusCoprobacillus0.0550.01750.0237
speciesAlistipes_senegalensis0.0550.01770.0239
genusClostridium0.0540.01970.0265
familyClostridiaceae0.0530.02120.0284
speciesStreptococcus_anginosus0.0530.02170.029
speciesLactobacillus_reuteri0.0530.02250.0299
speciesParabacteroides_unclassified-0.0530.02250.0299
speciesAcidaminococcus_unclassified0.0520.02450.0325
speciesPeptostreptococcus_stomatis0.0510.02640.0349
classDeltaproteobacteria-0.050.02910.0382
orderDesulfovibrionales-0.050.02910.0382
familyDesulfovibrionaceae-0.050.02910.0382
speciesStreptococcus_phage_Sfi210.0490.03370.0441
speciesPorphyromonas_uenonis0.0480.0360.0469
speciesClostridium_sp_L2_500.0480.03950.0514
speciesAlistipes_shahii-0.0470.04150.0538
speciesLactobacillus_ruminis-0.0470.04280.0553
speciesLactococcus_phage_bIL670.0460.04510.0582
genusSuccinatimonas-0.0450.04990.064
speciesSuccinatimonas_hippei-0.0450.04990.064
speciesClostridiales_bacterium_1_7_47FAA-0.0440.05580.0714
genusProteus-0.0440.05710.0728
speciesBacteroides_eggerthii-0.0430.06130.078
genusButyricicoccus0.0430.0620.0785
speciesButyricicoccus_pullicaecorum0.0430.0620.0785
speciesClostridium_clostridioforme0.0410.07680.0969
speciesClostridium_sp_ATCC_BAA_442-0.040.08380.105
familySuccinivibrionaceae-0.040.08530.107
speciesEscherichia_unclassified-0.040.08690.109
speciesBilophila_unclassified-0.0390.09450.118
speciesCoprobacillus_unclassified0.0370.1060.132
speciesEubacterium_eligens0.0370.1080.134
speciesClostridium_ramosum0.0370.1110.138
speciesBacteroides_dorei-0.0370.1140.141
speciesLachnospiraceae_bacterium_2_1_58FAA0.0360.1170.144
genusBilophila-0.0360.1180.145
genusAcidaminococcus-0.0340.1450.178
speciesLactobacillus_fermentum0.0340.1480.181
genusSutterella-0.0330.1510.184
speciesAlistipes_putredinis-0.0320.1620.197
speciesProteus_mirabilis-0.030.1890.229
genusPhascolarctobacterium0.030.1940.234
speciesPhascolarctobacterium_succinatutens0.030.1940.234
genusAcidaminococcaceae_unclassified0.0290.2040.246
genusDesulfovibrio-0.0290.2050.246
speciesKlebsiella_sp_MS_92_3-0.0290.210.252
familyMyoviridae-0.0290.2110.252
speciesLactobacillus_amylovorus0.0290.2130.254
speciesOscillibacter_sp_KLE_1728-0.0280.2240.266
speciesParabacteroides_sp_20_30.0270.2380.282
speciesParaprevotella_xylaniphila-0.0270.2430.287
speciesBacteroides_clarus-0.0270.2450.289
familyRikenellaceae-0.0260.2540.298
genusAlistipes-0.0260.2540.298
speciesLactococcus_garvieae-0.0260.2590.303
speciesSutterella_wadsworthensis-0.0260.260.304
speciesHaemophilus_sputorum-0.0260.2630.307
speciesEubacterium_dolichum0.0250.280.326
speciesBacteroides_salanitronis0.0240.2920.339
speciesRuminococcus_champanellensis0.0240.2930.339
speciesAlistipes_indistinctus0.0240.2970.343
speciesBacteroides_sp_4_3_47FAA-0.0230.3150.363
speciesWeissella_cibaria-0.0230.3170.364
speciesClostridium_citroniae-0.0230.3220.369
speciesAlistipes_sp_HGB50.0220.3350.383
genusMorganella-0.0210.3680.419
speciesMorganella_morganii-0.0210.3680.419
genusLambdalikevirus0.020.3780.429
speciesSutterella_parvirubra-0.020.3850.436
genusOxalobacter-0.020.3870.436
speciesOxalobacter_formigenes-0.020.3870.436
speciesKlebsiella_phage_KP36-0.020.3890.436
speciesLachnospiraceae_bacterium_6_1_63FAA0.020.3890.436
speciesCoprobacillus_sp_29_10.0190.4160.465
speciesBacteroides_sp_2_1_22-0.0190.4210.47
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.0180.4310.48
genusCatenibacterium0.0180.4360.482
speciesLactobacillus_crispatus-0.0180.4360.482
speciesCatenibacterium_mitsuokai0.0180.4360.482
speciesLactobacillus_vaginalis0.0170.4550.502
speciesLeuconostoc_lactis-0.0170.4570.503
speciesClostridium_hathewayi0.0170.4670.513
speciesStreptococcus_lutetiensis-0.0170.4710.515
speciesDorea_unclassified-0.0170.4710.515
speciesParabacteroides_johnsonii-0.0170.4720.515
speciesClostridium_symbiosum-0.0160.4760.518
speciesEnterobacteria_phage_HK544-0.0160.4830.524
speciesClostridium_bolteae-0.0160.4910.532
genusClostridiales_noname-0.0150.5130.554
familyOxalobacteraceae-0.0150.5190.559
genusTunalikevirus-0.0140.5350.575
speciesRoseburia_inulinivorans0.0140.550.59
speciesRuminococcus_callidus0.0140.5580.597
speciesBacteroides_cellulosilyticus0.0130.5760.615
speciesBacteroides_sp_1_1_6-0.0120.5940.633
familyClostridiales_noname0.0120.610.648
speciesDialister_succinatiphilus-0.0110.6240.662
speciesKlebsiella_oxytoca-0.010.6520.69
speciesOscillibacter_sp_KLE_17450.010.6590.696
speciesBacteroides_uniformis0.010.6620.697
speciesAlistipes_finegoldii0.0090.690.725
speciesBacteroides_fluxus0.0090.6930.727
familyViruses_noname0.0090.7090.74
genusViruses_noname0.0090.7090.74
speciesBilophila_wadsworthia-0.0080.7360.767
familyAcidaminococcaceae0.0070.7470.776
speciesParabacteroides_sp_D13-0.0070.7480.776
speciesDesulfovibrio_desulfuricans0.0070.7660.793
speciesLactobacillus_sanfranciscensis0.0060.8040.83
speciesLactobacillus_oris0.0060.8120.837
speciesCollinsella_unclassified0.0050.8220.845
genusParaprevotella-0.0050.830.852
speciesHoldemania_sp_AP20.0050.8390.858
speciesSlackia_piriformis-0.0050.840.858
speciesBifidobacterium_breve0.0050.8420.858
familyPodoviridae0.0040.8570.871
genusSlackia0.0040.8580.871
speciesParaprevotella_unclassified-0.0040.8790.89
genusMyoviridae_noname0.0020.9250.935
speciesPrevotella_bivia0.0020.9450.953
speciesParaprevotella_clara0.00.9920.998
speciesBifidobacterium_angulatum0.00.9940.998
speciesCollinsella_intestinalis0.00.9981.0
speciesBacteroides_barnesiae0.01.01.0
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.1253500871090.1000063547740.0006837324845423477.69332
Rheumatoid arthritisChina127980.1083989433670.08539628553360.023272434021118746.24937
Liver cirrhosisChina1201140.06127089917510.06296159057530.05846685904561492950.1495
Crohns diseaseSpain17660.1142488695720.1493706443710.07369877869291272842.3209
Type II diabetesSweden53920.2879499723450.2445667366740.143485852073512417.3518
Type II diabetesChina1831850.07225000160130.06239422524340.1581128891891189739.3172
Colorectal cancerAustria64350.2536883893730.2844990838040.158848258799714224.1643
Ulcerative colitisSpain78660.143220222750.1493706443710.5983255160142158071.1882
ObesityDenmark1691230.09872857712790.100917314480.8866560046472815192.5685
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382