MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-03-19 08:51:09 PST
Job id & description: 1774, dluni_ref.igc.80.3
Query type: protein
Count queries & homologs: 100, 100
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
NLF012_GL0064384766959CompleteK01447COG0791FirmicutesClostridium100.0100.0100.0
MH0369_GL0068656768952CompleteK01447COG0791FirmicutesClostridium100.0100.0100.0
MH0177_GL0084662771755CompleteK01447COG0791FirmicutesPseudoflavonifractor100.0100.0100.0
MH0451_GL0225404769346CompleteK01308COG2866unknownunknown100.0100.0100.0
764062976-stool1_revised784825CompleteK01447COG0791Firmicutesunknown100.0100.0100.0
V1.CD6-0-PT_GL0120375783802CompleteK01447COG0791Firmicutesunknown100.0100.0100.0
MH0297_GL0121926775641Lack 3'-endunknownCOG0791FirmicutesClostridium100.0100.0100.0
MH0375_GL0071336800946Lack 5'-endK01447COG0791unknownunknown100.0100.0100.0
457421.CBFG_00305767640CompleteK01447COG0791;COG3103Firmicutesunknown100.0100.0100.0
MH0425_GL0035186793849Lack 3'-endunknownCOG0791unknownunknown100.0100.0100.0
411902.CLOBOL_04719774463CompleteK01447COG0791;COG3103FirmicutesClostridium100.0100.0100.0
V1.CD6-0-PN_GL0068731805338Lack 3'-endunknownfirmNOG00999unknownunknown100.0100.0100.0
MH0403_GL0004330804553Lack 5'-endK01447COG0791;COG3103Firmicutesunknown100.0100.0100.0
T2D-53A_GL0021652860060Lack 5'-endK01463COG0791;COG0739FirmicutesBlautia100.0100.0100.0
V1.FI12_GL0157340881065Lack 5'-endK01463COG0791;COG0739FirmicutesCoprococcus100.0100.0100.0
MH0192_GL0166469829489Lack 5'-endK06306bactNOG34558unknownunknown100.0100.0100.0
333849.EfaeDRAFT_1606832537CompleteK01423COG3883FirmicutesEnterococcus100.0100.0100.0
645663.EfmE1039_1051832586CompleteK01423COG3883FirmicutesEnterococcus100.0100.0100.0
SZEY-39A_GL0020152961785CompleteK01447COG0791FirmicutesFaecalibacterium100.0100.0100.0
V1.FI33_GL00656031001913Lack 3'-endK01447COG0791FirmicutesFaecalibacterium100.0100.0100.0
MH0336_GL0019314944974CompleteK01308COG3409;COG2866unknownunknown100.0100.0100.0
MH0389_GL0196356964780Lack 5'-endK01447COG0791;COG3103unknownunknown100.0100.0100.0
457421.CBFG_05945952972CompleteK01447COG0791Firmicutesunknown100.0100.0100.0
T2D-61A_GL0023586952413CompleteK01447COG0791Firmicutesunknown100.0100.0100.0
O2.UC29-2_GL00276281039370Lack both endsK01463COG0791;COG0739Firmicutesunknown100.0100.0100.0
DLM012_GL0006226942063CompleteK01423COG3883FirmicutesEnterococcus100.0100.0100.0
V1.CD42-0_GL01449601079876CompleteK01447COG0791unknownunknown100.0100.0100.0
V1.CD54-0_GL00589971057172CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0044_GL00109951059527CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0143_GL00736741152794CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0444_GL00027861175239Lack 5'-endK01447COG0791FirmicutesPseudoflavonifractor100.0100.0100.0
N064A_GL00282851213132Lack 3'-endunknownCOG0791FirmicutesRoseburia100.0100.0100.0
T2D-76A_GL00809941137731Lack 5'-endK01308COG2866FirmicutesEubacterium100.0100.0100.0
V1.FI25_GL00781841226876CompleteK01376NOG237022BacteroidetesBacteroides100.0100.0100.0
MH0189_GL00087261201646CompleteK01183COG0791unknownunknown100.0100.0100.0
SZEY-07A_GL00118791163921Lack both endsunknownCOG0791unknownunknown100.0100.0100.0
MH0439_GL00000901240138CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0058_GL00774171172281CompleteK01447COG0791FirmicutesRoseburia100.0100.0100.0
DOM003_GL00033431205860CompleteK01447COG0791unknownunknown100.0100.0100.0
O2.UC49-0_GL01773331263117Lack both endsK01463COG0791;COG0739FirmicutesEubacterium100.0100.0100.0
MH0098_GL00874971252126CompleteK01183;K13695COG0791unknownunknown100.0100.0100.0
V1.UC35-4_GL02148431205535CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0003_GL00720711207498CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0165_GL00532281208700Lack 5'-endK13695COG0791unknownunknown100.0100.0100.0
V1.FI24_GL01046221263894CompleteK01447COG0791unknownunknown100.0100.0100.0
V1.CD44-0_GL00564931306891CompleteK13695COG0791unknownunknown100.0100.0100.0
MH0010_GL00190721273670CompleteK01447COG0791FirmicutesRoseburia100.0100.0100.0
MH0035_GL00445021302505CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0276_GL00158101282984CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
MH0253_GL01626351296971CompleteK01308COG3409;COG2866unknownunknown100.0100.0100.0
MH0035_GL00036001302499CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0305_GL00445861327176CompleteK13695COG0791unknownunknown100.0100.0100.0
MH0396_GL01457901350416Lack 3'-endK01308COG3409;COG2866unknownunknown100.0100.0100.0
765701615-stool1_revised1324294CompleteK01308COG3409;COG2866unknownunknown100.0100.0100.0
MH0405_GL01123691320457CompleteK13695COG0791unknownunknown100.0100.0100.0
T2D-48A_GL00321631443193CompleteK01376NOG237022Bacteroidetesunknown100.0100.0100.0
MH0008_GL00457931402493CompleteK01308COG3409;COG2866unknownunknown100.0100.0100.0
MH0003_GL00733811370001CompleteK01308COG3409;COG2866unknownunknown100.0100.0100.0
V1.CD7-0_GL00551951449924CompleteunknownCOG0791FirmicutesBlautia100.0100.0100.0
MH0451_GL01766321423376CompleteK01308COG3409;COG2866unknownunknown100.0100.0100.0
MH0447_GL02178921373915Lack 5'-endK01308COG3409;COG2866unknownunknown100.0100.0100.0
MH0096_GL00114651363028CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0089_GL00426351445110CompleteK01308COG3409;COG2866unknownunknown100.0100.0100.0
O2.UC44-2_GL02439621351475Lack 5'-endK01308COG3409;COG2866unknownunknown100.0100.0100.0
515619.EUBREC_05521444058CompleteK01447COG0791FirmicutesEubacterium100.0100.0100.0
159753524-stool2_revised1418674CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0124_GL00098581428472CompleteK01308COG3409;COG2866unknownunknown100.0100.0100.0
MH0442_GL00795431423261CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
O2.UC13-0_GL00524201523061Lack both endsK01463COG0791;COG0739Firmicutesunknown100.0100.0100.0
V1.UC49-1_GL01901971425251CompleteK01308COG3409;COG2866unknownunknown100.0100.0100.0
O2.UC24-1_GL00811711432075CompleteK01308COG3409;COG2866unknownunknown100.0100.0100.0
MH0176_GL00134121412304CompleteK01308COG3409;COG2866unknownunknown100.0100.0100.0
MH0268_GL00002081413248CompleteK01308COG3409;COG2866unknownunknown100.0100.0100.0
158944319-stool1_revised1443555CompleteK01308COG2866unknownunknown100.0100.0100.0
NOM005_GL00823041508934CompleteK01447COG0791unknownunknown100.0100.0100.0
DOM022_GL00539451603352Lack 5'-endK01376NOG237022BacteroidetesBacteroides100.0100.0100.0
MH0174_GL00108821520281CompleteK01447COG0791unknownunknown100.0100.0100.0
V1.UC4-0_GL01059581524727CompleteK01447COG0791unknownunknown100.0100.0100.0
160319967-stool1_revised1604740Lack 5'-endK01463COG0791;COG0739Firmicutesunknown100.0100.0100.0
DOM005_GL00165681630760CompleteK01376NOG237022BacteroidetesBacteroides100.0100.0100.0
N085A_GL00235051631174CompleteK01376NOG237022BacteroidetesBacteroides100.0100.0100.0
T2D-133A_GL01247191631409CompleteK01376NOG237022BacteroidetesBacteroides100.0100.0100.0
MH0061_GL00589971633438CompleteK01376NOG237022BacteroidetesBacteroides100.0100.0100.0
MH0101_GL00825711633779CompleteK01376NOG237022Bacteroidetesunknown100.0100.0100.0
O2.UC1-2_GL01561771523057CompleteK01183COG0791unknownunknown100.0100.0100.0
MH0101_GL00682531633776CompleteK01376NOG237022BacteroidetesBacteroides100.0100.0100.0
MH0333_GL00491861636025CompleteK01376NOG237022Bacteroidetesunknown100.0100.0100.0
MH0381_GL01246021636589CompleteK01376NOG237022Bacteroidetesunknown100.0100.0100.0
T2D-59A_GL00054921534331CompleteK01447COG0791Firmicutesunknown100.0100.0100.0
MH0016_GL00757231633110CompleteK01376NOG237022BacteroidetesBacteroides100.0100.0100.0
MH0074_GL00168071633511CompleteK01376NOG237022BacteroidetesBacteroides100.0100.0100.0
MH0003_GL00764131632826CompleteK01376NOG237022Bacteroidetesunknown100.0100.0100.0
MH0222_GL01114331634999CompleteK01376NOG237022Bacteroidetesunknown100.0100.0100.0
MH0004_GL00288741632844CompleteK01376NOG237022BacteroidetesBacteroides100.0100.0100.0
N087A_GL00672001640475CompleteK01376NOG237022Bacteroidetesunknown100.0100.0100.0
MH0101_GL00501791570844CompleteK01447COG0791Firmicutesunknown100.0100.0100.0
V1.UC16-0_GL00379671532914CompleteK01447COG0791unknownunknown100.0100.0100.0
T2D-47A_GL01111051577660CompleteK01447COG0791Firmicutesunknown100.0100.0100.0
V1.UC31-0_GL01155631630295CompleteK01447COG0791FirmicutesRoseburia100.0100.0100.0
MH0082_GL00239781624582CompleteK01447COG0791FirmicutesEubacterium100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusPrevotella-0.4333.05e-861.44e-83
familyPrevotellaceae-0.4311.88e-853.08e-83
speciesPrevotella_copri-0.4311.96e-853.08e-83
familyBacteroidaceae0.3421.49e-521.41e-50
genusBacteroides0.3421.49e-521.41e-50
speciesBacteroides_uniformis0.3231.6e-461.26e-44
speciesEggerthella_unclassified0.2589.84e-306.63e-28
genusEggerthella0.2554.43e-292.61e-27
speciesClostridium_asparagiforme0.246.09e-263.19e-24
genusHoldemania0.2357.9e-253.73e-23
genusEubacterium0.237.36e-242.98e-22
familyEubacteriaceae0.237.58e-242.98e-22
speciesClostridium_bolteae0.2241.01e-223.67e-21
genusFlavonifractor0.2231.74e-225.48e-21
speciesFlavonifractor_plautii0.2231.74e-225.48e-21
speciesBacteroides_plebeius-0.2214.01e-221.18e-20
speciesClostridium_citroniae0.225.03e-221.4e-20
speciesEubacterium_rectale0.2172.24e-215.87e-20
speciesClostridiales_bacterium_1_7_47FAA0.2146.8e-211.69e-19
speciesAnaerotruncus_colihominis0.2096.74e-201.59e-18
genusParaprevotella-0.2021.2e-182.7e-17
genusRoseburia0.2021.37e-182.93e-17
speciesPrevotella_stercorea-0.2011.43e-182.93e-17
speciesParaprevotella_unclassified-0.2012.02e-183.97e-17
speciesEubacterium_biforme-0.1985.87e-181.11e-16
familyOscillospiraceae0.191.4e-162.45e-15
genusOscillibacter0.191.4e-162.45e-15
speciesEggerthella_lenta0.1865.58e-169.41e-15
speciesClostridium_symbiosum0.1856.27e-161.02e-14
speciesLachnospiraceae_bacterium_1_4_56FAA0.1857.74e-161.22e-14
speciesParaprevotella_xylaniphila-0.1841.16e-151.77e-14
genusRuminococcus0.183.89e-155.74e-14
speciesOlsenella_unclassified-0.1771.49e-142.13e-13
speciesRoseburia_intestinalis0.1752.37e-143.29e-13
genusOlsenella-0.1752.73e-143.68e-13
speciesOscillibacter_unclassified0.1743.18e-144.17e-13
genusCatenibacterium-0.1743.47e-144.31e-13
speciesCatenibacterium_mitsuokai-0.1743.47e-144.31e-13
speciesClostridium_hathewayi0.1744.13e-145e-13
genusGordonibacter0.1726.64e-147.64e-13
speciesGordonibacter_pamelaeae0.1726.64e-147.64e-13
speciesParaprevotella_clara-0.1728.15e-149.16e-13
speciesMethanobrevibacter_smithii-0.1711.07e-131.17e-12
classMethanobacteria-0.171.58e-131.62e-12
orderMethanobacteriales-0.171.58e-131.62e-12
familyMethanobacteriaceae-0.171.58e-131.62e-12
genusMethanobrevibacter-0.1673.2e-133.21e-12
genusLachnospiraceae_noname0.1664.74e-134.66e-12
phylumEuryarchaeota-0.1665.49e-135.29e-12
speciesBacteroides_fragilis0.1656.53e-136.16e-12
genusPhascolarctobacterium-0.1649.14e-138.3e-12
speciesPhascolarctobacterium_succinatutens-0.1649.14e-138.3e-12
classClostridia0.1631.17e-121.02e-11
orderClostridiales0.1631.17e-121.02e-11
familyClostridiales_noname0.1621.72e-121.48e-11
classNegativicutes-0.163.1e-122.57e-11
orderSelenomonadales-0.163.1e-122.57e-11
genusAdlercreutzia0.1594.95e-123.96e-11
speciesAdlercreutzia_equolifaciens0.1594.95e-123.96e-11
speciesBacteroides_coprocola-0.1532.72e-112.14e-10
speciesButyrivibrio_crossotus-0.1523.6e-112.79e-10
speciesBacteroides_thetaiotaomicron0.157.34e-115.59e-10
speciesBacteroides_stercoris0.158.1e-116.07e-10
speciesLachnospiraceae_bacterium_5_1_57FAA0.1471.62e-101.19e-09
speciesHoldemania_filiformis0.1452.75e-102e-09
speciesRuminococcus_bromii0.1452.95e-102.11e-09
genusErysipelotrichaceae_noname-0.1444.27e-103.01e-09
speciesRuminococcus_sp_5_1_39BFAA0.1426.68e-104.64e-09
speciesRuminococcus_gnavus0.1427.22e-104.94e-09
genusClostridiales_noname0.1419.64e-106.5e-09
speciesClostridium_clostridioforme0.1411.01e-096.71e-09
speciesLachnospiraceae_bacterium_5_1_63FAA0.141.09e-097.15e-09
speciesRuminococcus_torques0.141.2e-097.76e-09
speciesEubacterium_sp_3_1_310.1381.96e-091.25e-08
familyAcidaminococcaceae-0.1372.4e-091.51e-08
speciesBacteroides_ovatus0.1372.56e-091.59e-08
speciesSutterella_wadsworthensis-0.1363.7e-092.27e-08
speciesEubacterium_ventriosum0.1363.91e-092.37e-08
speciesBlautia_producta0.1363.99e-092.38e-08
speciesRuminococcus_champanellensis-0.1311.3e-087.67e-08
speciesDesulfovibrio_piger-0.131.84e-081.07e-07
genusSutterella-0.1291.99e-081.15e-07
speciesCoprobacillus_unclassified0.1273.87e-082.2e-07
genusBlautia0.1273.91e-082.2e-07
genusButyrivibrio-0.1264.57e-082.54e-07
genusClostridium0.1247.81e-084.29e-07
familyClostridiaceae0.121.84e-079.98e-07
familyLachnospiraceae0.121.99e-071.06e-06
speciesBlautia_hydrogenotrophica0.121.99e-071.06e-06
genusCoprobacillus0.1165.27e-072.76e-06
speciesPrevotella_buccae-0.1155.53e-072.84e-06
speciesMethanobrevibacter_unclassified-0.1155.53e-072.84e-06
speciesBacteroides_coprophilus-0.1155.66e-072.85e-06
genusMegasphaera-0.1155.67e-072.85e-06
speciesBacteroides_xylanisolvens0.1121.18e-065.86e-06
genusMethanosphaera-0.1121.28e-066.23e-06
speciesMethanosphaera_stadtmanae-0.1121.28e-066.23e-06
speciesLachnospiraceae_bacterium_1_1_57FAA0.1111.45e-066.98e-06
speciesBacteroides_cellulosilyticus0.1111.67e-067.96e-06
speciesClostridium_leptum0.111.79e-068.45e-06
speciesMitsuokella_multacida-0.112.03e-069.49e-06
speciesLachnospiraceae_bacterium_6_1_63FAA0.112.05e-069.49e-06
speciesBilophila_wadsworthia0.1092.21e-061.01e-05
genusPyramidobacter0.1092.32e-061.04e-05
speciesPyramidobacter_piscolens0.1092.32e-061.04e-05
familyRikenellaceae0.1082.82e-061.24e-05
genusAlistipes0.1082.82e-061.24e-05
speciesLactobacillus_ruminis-0.1082.93e-061.28e-05
genusAggregatibacter-0.1083.04e-061.32e-05
speciesBacteroides_pectinophilus-0.1073.18e-061.36e-05
speciesBacteroides_faecis-0.1073.44e-061.46e-05
genusSutterellaceae_unclassified-0.1073.5e-061.47e-05
speciesMitsuokella_unclassified-0.1073.71e-061.55e-05
speciesMegamonas_hypermegale-0.1064.77e-061.97e-05
speciesAggregatibacter_segnis-0.1055.11e-062.1e-05
genusMitsuokella-0.1046.34e-062.58e-05
genusBilophila0.1046.9e-062.78e-05
orderPasteurellales-0.1047.26e-062.88e-05
familyPasteurellaceae-0.1047.26e-062.88e-05
speciesMegamonas_funiformis-0.1037.62e-063e-05
speciesBilophila_unclassified0.1029.22e-063.6e-05
genusHaemophilus-0.1011.19e-054.6e-05
speciesDialister_invisus0.11.53e-055.8e-05
phylumSynergistetes0.11.56e-055.8e-05
classSynergistia0.11.56e-055.8e-05
orderSynergistales0.11.56e-055.8e-05
familySynergistaceae0.11.56e-055.8e-05
speciesHaemophilus_parainfluenzae-0.0991.71e-056.31e-05
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0972.41e-058.82e-05
speciesMegamonas_unclassified-0.0963.28e-050.000119
genusMegamonas-0.0963.39e-050.000122
speciesHoldemania_unclassified0.0954.03e-050.000144
speciesRoseburia_unclassified-0.0944.36e-050.000155
speciesAlistipes_onderdonkii0.0944.45e-050.000157
familySutterellaceae-0.0944.73e-050.000165
speciesHoldemania_sp_AP20.0945.08e-050.000176
familyVeillonellaceae-0.0935.76e-050.000198
speciesEubacterium_hallii0.0926.92e-050.000237
speciesRoseburia_inulinivorans0.098.9e-050.000302
speciesCampylobacter_concisus-0.099.96e-050.000336
classErysipelotrichia-0.0870.0001660.000548
orderErysipelotrichales-0.0870.0001660.000548
familyErysipelotrichaceae-0.0870.0001660.000548
speciesFusobacterium_nucleatum-0.0860.0001920.000629
speciesClostridium_ramosum0.0850.0002150.0007
speciesAlistipes_senegalensis-0.0850.0002330.000753
speciesBacteroides_oleiciplenus0.0840.0002570.000825
speciesCollinsella_aerofaciens-0.0820.0003840.00122
speciesMegasphaera_micronuciformis-0.0820.000390.00124
speciesEubacterium_dolichum0.0820.0003970.00125
speciesLactobacillus_mucosae-0.0810.0004560.00143
speciesLachnospiraceae_bacterium_7_1_58FAA0.0810.0004680.00145
speciesLachnospiraceae_bacterium_8_1_57FAA-0.080.0004950.00153
speciesAlistipes_sp_AP110.0790.0006170.00189
speciesDorea_unclassified-0.0790.0006310.0019
genusOxalobacter-0.0790.0006330.0019
speciesOxalobacter_formigenes-0.0790.0006330.0019
speciesBacteroides_intestinalis0.0790.0006470.00193
speciesBifidobacterium_pseudocatenulatum0.0790.0006550.00194
speciesRuminococcus_obeum0.0780.0007290.00215
speciesLactobacillus_sanfranciscensis0.0780.0007540.00221
classBetaproteobacteria-0.0780.0007580.00221
familyOxalobacteraceae-0.0770.0008160.00236
speciesErysipelotrichaceae_bacterium_6_1_450.0770.0008850.00255
speciesAnaerostipes_unclassified0.0760.0009630.00275
orderBurkholderiales-0.0760.001020.0029
speciesBifidobacterium_breve-0.0760.001060.003
genusClostridiaceae_noname0.0750.001120.00313
speciesClostridiaceae_bacterium_JC1180.0750.001120.00313
speciesBifidobacterium_longum0.0750.001130.00314
speciesMegamonas_rupellensis-0.0740.001290.00356
classEpsilonproteobacteria-0.0740.001310.00357
orderCampylobacterales-0.0740.001310.00357
genusBurkholderiales_noname0.0740.001390.00375
speciesBurkholderiales_bacterium_1_1_470.0740.001390.00375
genusDesulfovibrio-0.0740.001470.00393
speciesBacteroides_nordii0.0730.001480.00393
classDeltaproteobacteria0.0730.00150.00393
orderDesulfovibrionales0.0730.00150.00393
familyDesulfovibrionaceae0.0730.00150.00393
speciesMegasphaera_unclassified-0.0730.001660.00433
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0720.001950.00506
speciesClostridium_sp_ATCC_BAA_4420.0710.001980.00511
genusAnaerostipes0.0710.002060.00528
familyBurkholderiales_noname0.0710.002160.00551
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speciesOscillibacter_sp_KLE_17450.0670.003890.00951
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speciesCoriobacteriaceae_bacterium_phI0.0480.03820.073
speciesLactobacillus_vaginalis-0.0480.03960.0754
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genusParasutterella0.0460.04660.0866
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speciesOscillibacter_sp_KLE_17280.0450.05160.0951
speciesSubdoligranulum_sp_4_3_54A2FAA0.0440.05880.108
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speciesVeillonella_dispar-0.0420.06620.119
speciesDorea_formicigenerans0.0420.06620.119
speciesAlistipes_putredinis0.0420.06630.119
speciesEnterobacteria_phage_HK5440.0420.06920.124
speciesBifidobacterium_angulatum-0.0420.07040.126
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speciesEggerthella_sp_1_3_56FAA0.0410.07320.129
genusStaphylococcus0.0410.07490.132
speciesClostridium_sp_KLE_17550.0410.07760.136
speciesAnaerotruncus_unclassified-0.0410.07870.138
speciesEubacterium_eligens-0.040.08570.149
speciesSlackia_piriformis-0.0390.08820.153
genusLeuconostoc0.0390.08950.155
speciesParabacteroides_sp_D13-0.0390.09060.156
speciesLactobacillus_rhamnosus-0.0390.09120.157
speciesEubacterium_cylindroides-0.0390.09570.164
speciesStreptococcus_mitis_oralis_pneumoniae-0.0380.09670.165
speciesBacteroides_dorei0.0370.1120.19
genusSolobacterium0.0360.1180.199
speciesSolobacterium_moorei0.0360.1180.199
genusAcidaminococcaceae_unclassified-0.0360.1220.204
speciesLactobacillus_acidophilus0.0360.1230.204
speciesHaemophilus_sputorum-0.0360.1230.204
speciesErysipelotrichaceae_bacterium_2_2_44A0.0360.1230.204
speciesEubacterium_limosum0.0360.1240.205
speciesOdoribacter_unclassified-0.0360.1240.205
speciesBacteroides_salanitronis-0.0350.1260.207
speciesLeuconostoc_lactis0.0350.1270.208
speciesCollinsella_unclassified0.0350.1290.211
speciesCitrobacter_freundii-0.0350.1310.213
speciesStreptococcus_anginosus-0.0350.1350.219
speciesAcidaminococcus_unclassified-0.0340.1370.221
genusAcidaminococcus-0.0340.1380.222
speciesErysipelotrichaceae_bacterium_3_1_530.0340.1440.231
genusKlebsiella-0.0340.1450.232
speciesStreptococcus_lutetiensis-0.0330.1480.236
genusAnaerotruncus0.0330.1560.247
speciesLactococcus_phage_jm20.0330.1570.247
speciesStreptococcus_infantarius-0.0330.1570.247
speciesLactococcus_phage_P6800.0330.1570.247
speciesClostridium_perfringens-0.0320.1650.259
speciesPeptostreptococcaceae_noname_unclassified-0.0320.1670.261
genusBarnesiella-0.0310.1760.273
speciesBarnesiella_intestinihominis-0.0310.1760.273
speciesBacteroides_clarus0.0310.1790.277
speciesLactobacillus_oris-0.0310.1850.285
phylumViruses_noname-0.030.190.291
classViruses_noname-0.030.190.291
speciesEubacterium_ramulus0.030.1920.293
speciesDorea_longicatena-0.030.1940.295
speciesClostridium_nexile0.030.2010.305
genusBifidobacterium0.0290.2030.307
speciesLactobacillus_fermentum-0.0290.2060.311
speciesVeillonella_parvula-0.0290.2080.313
genusWeissella0.0290.2130.317
speciesEnterococcus_faecalis-0.0290.2130.317
speciesAlistipes_finegoldii0.0290.2130.317
genusPorphyromonas-0.0290.2160.321
orderBifidobacteriales0.0280.2250.332
familyBifidobacteriaceae0.0280.2250.332
speciesStreptococcus_thermophilus0.0280.2260.332
speciesLactobacillus_casei_paracasei-0.0260.2570.377
speciesPropionibacterium_freudenreichii0.0260.2590.378
speciesAlistipes_unclassified-0.0260.2610.38
speciesFusobacterium_varium0.0260.2670.388
speciesParvimonas_unclassified-0.0250.2760.399
genusParvimonas-0.0250.2770.399
speciesStreptococcus_salivarius0.0250.2770.399
speciesCoprobacillus_sp_D60.0250.2840.407
genusPantoea-0.0240.2910.415
speciesPantoea_unclassified-0.0240.2910.415
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speciesRothia_mucilaginosa-0.0240.3020.427
speciesParabacteroides_distasonis-0.0240.3040.428
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genusMorganella-0.0230.3220.447
speciesMorganella_morganii-0.0230.3220.447
genusRothia-0.0230.3230.447
familyBacteroidales_noname0.0230.3270.449
genusBacteroidales_noname0.0230.3270.449
speciesBacteroidales_bacterium_ph80.0230.3270.449
speciesRuminococcus_callidus0.0220.3510.48
familyPodoviridae0.0220.3520.48
speciesParabacteroides_merdae-0.0210.3590.488
speciesStreptococcus_phage_Sfi21-0.0210.3630.492
speciesPorphyromonas_uenonis-0.0210.3690.498
orderEnterobacteriales-0.0210.370.498
familyEnterobacteriaceae-0.0210.370.498
speciesLactobacillus_delbrueckii-0.0210.3730.5
speciesLactococcus_phage_phi70.020.3780.505
familyViruses_noname-0.020.380.505
genusViruses_noname-0.020.380.505
speciesCoprobacillus_sp_29_1-0.020.3830.508
speciesKlebsiella_phage_KP360.020.3880.513
speciesBacteroides_fluxus0.020.3950.521
speciesBacteroides_sp_2_1_220.0190.4050.532
orderBacillales0.0190.4070.534
speciesBacteroides_massiliensis-0.0190.4170.545
speciesPrevotella_bivia0.0180.4260.555
genusActinomyces-0.0180.4290.558
speciesStreptococcus_gordonii-0.0180.430.558
familyMyoviridae0.0180.4370.565
genusPropionibacterium0.0180.4450.574
speciesWeissella_confusa0.0180.4460.574
speciesCitrobacter_unclassified-0.0170.4720.605
familyActinomycetaceae-0.0160.480.614
genusEscherichia-0.0160.4920.628
speciesLactobacillus_amylovorus-0.0160.4960.629
speciesDesulfovibrio_desulfuricans-0.0160.4960.629
speciesStreptococcus_parasanguinis0.0150.5130.649
genusCitrobacter-0.0150.5220.657
familyBacillales_noname0.0150.5230.657
genusGemella0.0150.5230.657
speciesKlebsiella_sp_MS_92_30.0150.5290.662
orderPseudomonadales-0.0140.5330.666
genusStreptococcus0.0140.5360.668
orderActinomycetales-0.0140.540.671
speciesBacteroides_sp_1_1_60.0140.5420.671
speciesRuminococcus_lactaris-0.0140.5540.683
speciesEscherichia_coli-0.0140.5540.683
speciesLactococcus_garvieae-0.0140.5590.685
speciesBifidobacterium_animalis-0.0140.5590.685
genusLambdalikevirus-0.0130.5650.691
speciesC2likevirus_unclassified-0.0120.5990.731
speciesStreptococcus_vestibularis-0.0120.6040.734
speciesLachnospiraceae_bacterium_2_1_46FAA0.0120.6070.734
speciesRuminococcus_sp_JC304-0.0120.610.734
genusButyricicoccus-0.0120.6120.734
speciesButyricicoccus_pullicaecorum-0.0120.6120.734
phylumBacteroidetes0.0120.6140.734
classBacteroidia0.0120.6140.734
orderBacteroidales0.0120.6140.734
genusPseudoflavonifractor0.0120.6180.735
speciesPseudoflavonifractor_capillosus0.0120.6180.735
genusC2likevirus-0.0110.6210.736
speciesBifidobacterium_bifidum-0.0110.6220.736
genusTunalikevirus0.0110.6270.738
speciesOdoribacter_laneus0.0110.6280.738
speciesStreptococcus_sanguinis0.0110.6290.738
speciesEnterococcus_faecium0.0110.6330.738
speciesAlistipes_shahii0.0110.6330.738
genusRuminococcaceae_noname0.0110.6350.738
speciesRuminococcaceae_bacterium_D160.0110.6350.738
speciesPeptostreptococcus_anaerobius0.0110.6440.746
familyPeptostreptococcaceae0.0110.6450.746
genusProteus-0.0110.6490.749
genusSiphoviridae_noname0.010.660.76
speciesSutterella_parvirubra0.010.6680.767
speciesStreptococcus_mutans-0.010.6730.771
speciesAlistipes_indistinctus-0.010.6780.775
speciesKlebsiella_oxytoca0.0090.6820.778
familyStreptococcaceae0.0090.6850.779
speciesEnterobacter_aerogenes-0.0090.6880.781
speciesEnterobacter_cloacae-0.0090.6930.784
speciesBacteroides_sp_4_3_47FAA0.0080.7150.807
speciesEscherichia_unclassified-0.0080.7240.816
familyPropionibacteriaceae0.0080.7280.817
genusEnterobacter-0.0080.7290.817
genusButyricimonas0.0080.7350.817
speciesButyricimonas_synergistica0.0080.7350.817
speciesParabacteroides_sp_20_3-0.0080.7360.817
speciesAlistipes_sp_HGB5-0.0080.7360.817
familyClostridiales_Family_XI_Incertae_Sedis-0.0080.7380.818
speciesBacteroides_salyersiae-0.0070.7490.827
speciesCoprococcus_comes-0.0070.750.827
orderCaudovirales0.0070.7540.828
speciesAcidaminococcus_intestini-0.0070.7540.828
speciesClostridium_spiroforme-0.0070.7750.849
speciesParabacteroides_johnsonii-0.0060.7840.857
speciesSubdoligranulum_unclassified-0.0060.790.861
genusMyoviridae_noname0.0060.7930.862
speciesBifidobacterium_catenulatum-0.0060.7960.864
genusTuricibacter-0.0050.8220.89
familySiphoviridae-0.0050.830.896
speciesBacteroides_sp_3_1_19-0.0050.840.905
genusOdoribacter-0.0040.8490.913
speciesCoprococcus_sp_ART55_1-0.0040.8560.918
speciesTuricibacter_sanguinis-0.0040.8580.918
genusDorea0.0040.8640.923
genusSubdoligranulum-0.0040.870.927
speciesButyrivibrio_unclassified-0.0040.8770.931
speciesPorphyromonas_asaccharolytica-0.0030.8810.931
speciesFusobacterium_ulcerans-0.0030.8840.931
genusPeptoniphilus0.0030.8870.931
speciesCollinsella_tanakaei-0.0030.8870.931
speciesProteus_mirabilis0.0030.8930.931
genusCoprobacter-0.0030.8980.931
speciesCoprobacter_fastidiosus-0.0030.8980.931
phylumVerrucomicrobia-0.0030.9010.931
classVerrucomicrobiae-0.0030.9010.931
orderVerrucomicrobiales-0.0030.9010.931
familyVerrucomicrobiaceae-0.0030.9010.931
genusAkkermansia-0.0030.9010.931
speciesAkkermansia_muciniphila-0.0030.9010.931
familyEnterococcaceae-0.0030.9070.935
speciesBacteroides_eggerthii0.0030.9110.937
genusEnterococcus-0.0020.9210.945
speciesLactococcus_phage_936_sensu_lato0.0020.9230.945
genusCoprococcus-0.0020.9420.962
speciesLactococcus_phage_bIL67-0.0010.9510.969
genusLactococcus-0.0010.9540.97
speciesOdoribacter_splanchnicus-0.0010.9610.975
speciesBacteroides_caccae-0.0010.9630.975
speciesGemella_morbillorum-0.0010.9710.981
speciesLactococcus_lactis0.0010.9730.981
speciesTuricibacter_unclassified0.00.9830.989
speciesParabacteroides_unclassified0.00.990.994
speciesLactobacillus_reuteri0.00.9960.997
speciesWeissella_cibaria0.00.9970.997
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.1188906017150.1520886835920.000448004362656655122.0061
ObesityDenmark1691230.1519463186650.1419062363130.1961085227451086435.7239
Ulcerative colitisSpain78660.1343076159520.1446628524390.2113424278651102236.3594
Type II diabetesChina1831850.167954339080.1568430219290.2427616014411456748.141
Crohns diseaseSpain17660.165878382340.1446628524390.2862803373591894562.9925
Rheumatoid arthritisChina127980.1937105637890.1772297719040.3250160167361277042.5851
Colorectal cancerAustria64350.1439133722850.1568600143960.453120299651634155.2883
Type II diabetesSweden53920.1942634949730.1898274350340.8125823498682460083.3051
Type II diabetesDenmark752770.1479125333180.1482622447051.03049299.9508
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382