MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-03-19 08:52:27 PST
Job id & description: 1775, dluni_ref.igc.80.4
Query type: protein
Count queries & homologs: 100, 100
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
765094712-stool1_revised1651533CompleteK01376NOG237022Bacteroidetesunknown100.0100.0100.0
T2D-189A_GL00443481700607Lack 5'-endK01447COG0791FirmicutesClostridium100.0100.0100.0
N042A_GL00241801659834CompleteK01447bactNOG20713FirmicutesCoprococcus100.0100.0100.0
V1.CD54-0_GL01359411698115CompleteunknownCOG0791FirmicutesBlautia100.0100.0100.0
MH0377_GL01271921665803CompleteK01447COG0791FirmicutesRoseburia100.0100.0100.0
V1.FI16_GL01010641658523CompleteK01447COG0791FirmicutesRoseburia100.0100.0100.0
V1.CD32-0_GL01552641707828Lack 5'-endK01447bactNOG20713FirmicutesCoprococcus100.0100.0100.0
MH0311_GL00883361694924Lack 5'-endK01308COG3409;COG2866FirmicutesRoseburia100.0100.0100.0
V1.FI17_GL00037131648800CompleteK01447COG0791;COG3103FirmicutesPeptostreptococcus100.0100.0100.0
O2.UC15-0_GL00038641696929CompleteK01183COG0791unknownunknown100.0100.0100.0
556261.HMPREF0240_018641779595CompleteunknownbactNOG20713FirmicutesClostridium100.0100.0100.0
V1.FI26_GL01162851747788CompleteunknownCOG0791unknownunknown100.0100.0100.0
585501.HMPREF6123_07721788799CompleteK01308COG2866FirmicutesOribacterium100.0100.0100.0
T2D-56A_GL00106641719931Lack 5'-endK01308COG2866unknownunknown100.0100.0100.0
MH0127_GL00750911839448CompleteK01447bactNOG20713FirmicutesCoprococcus100.0100.0100.0
V1.CD20-4_GL01009871844264CompleteunknownCOG0791unknownunknown100.0100.0100.0
245018.CL2_182201828023CompleteK01447COG0791Firmicutesunknown100.0100.0100.0
MH0444_GL00371701934853CompleteunknownCOG0791FirmicutesBlautia100.0100.0100.0
765701615-stool1_revised1857966Lack 5'-endK01308COG2866unknownunknown100.0100.0100.0
V1.UC16-0_GL00379661865151CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0222_GL01098111932261CompleteK01308COG3409;COG2866FirmicutesRoseburia100.0100.0100.0
V1.CD29-0_GL01542971925860CompleteK01447COG0791FirmicutesClostridium100.0100.0100.0
MH0158_GL00033182047403Lack 5'-endK01447COG0791FirmicutesPseudoflavonifractor100.0100.0100.0
NLM028_GL00402791959050CompleteK01447;K13694COG0791FirmicutesClostridium100.0100.0100.0
O2.CD2-0-PT_GL00466351945452CompleteK01447COG0791Firmicutesunknown100.0100.0100.0
SZEY-63A_GL00408812001701Lack 5'-endK01447COG0791unknownunknown100.0100.0100.0
T2D-19A_GL00430232109871Lack 5'-endK01447COG0791FirmicutesPseudoflavonifractor100.0100.0100.0
SZEY-78A_GL00380132109577Lack 5'-endK01447COG0791;COG3103unknownunknown100.0100.0100.0
NLM027_GL00465312032724CompleteK13694COG0791FirmicutesClostridium100.0100.0100.0
V1.CD19-0_GL00655062118000Lack 3'-endK01447bactNOG20713FirmicutesCoprococcus100.0100.0100.0
MH0409_GL01623092160551CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
T2D-122A_GL00718072165218CompleteK13695COG0791unknownunknown100.0100.0100.0
MH0147_GL00899712191814CompleteK01447COG0791FirmicutesDorea100.0100.0100.0
MH0011_GL00503542178696CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
O2.UC8-1_GL00839262233079Lack 5'-endK01463COG0791;COG0739FirmicutesEubacterium100.0100.0100.0
DOM001_GL00422282298006Lack 5'-endK01376COG0791BacteroidetesBacteroides100.0100.0100.0
MH0426_GL00908342231414Lack 5'-endK01463COG0791;COG0739FirmicutesEubacterium100.0100.0100.0
MH0239_GL00930652291460CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0385_GL01554732183088CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
MH0314_GL00311542331244Lack 5'-endK01376COG0791BacteroidetesBacteroides100.0100.0100.0
O2.UC34-2_GL00581182173433CompleteK01447COG0791;COG3103FirmicutesClostridium100.0100.0100.0
MH0006_GL00558622213872CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
MH0102_GL00984952215029CompleteK01308COG2866unknownunknown100.0100.0100.0
V1.CD7-0-PN_GL00379392283824CompleteK01447COG0791FirmicutesLactobacillus100.0100.0100.0
O2.UC58-2_GL00026502196939CompleteK01447COG0791;COG3103FirmicutesClostridium100.0100.0100.0
NOM005_GL00791142311251Lack 5'-endK01308COG2866FirmicutesRuminococcus100.0100.0100.0
159571453-stool1_revised2376949Lack 5'-endK01376COG0791BacteroidetesBacteroides100.0100.0100.0
V1.UC11-0_GL00939112310020Lack 5'-endK01463COG0791;COG0739FirmicutesEubacterium100.0100.0100.0
159571453-stool1_revised2376952Lack 5'-endK01376COG0791BacteroidetesBacteroides100.0100.0100.0
MH0413_GL01535642345410CompleteK01308COG2866FirmicutesRuminococcus100.0100.0100.0
MH0267_GL01495912420247CompleteK01376COG0791Bacteroidetesunknown100.0100.0100.0
MH0426_GL00719552281306CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
NOM023_GL00219752426645CompleteK01376COG0791Bacteroidetesunknown100.0100.0100.0
V1.CD38-0_GL00995452424536CompleteK01376COG0791BacteroidetesBacteroides100.0100.0100.0
MH0274_GL01797612420333Lack 5'-endK01376COG0791BacteroidetesBacteroides100.0100.0100.0
O2.UC19-1_GL00431422448616CompleteK01376COG0791BacteroidetesBacteroides100.0100.0100.0
MH0037_GL00431322429876CompleteK01376COG0791BacteroidetesBacteroides100.0100.0100.0
MH0274_GL00181632432896CompleteK01376COG0791unknownunknown100.0100.0100.0
V1.UC27-0_GL01145112297331CompleteK01447COG0791;COG3103FirmicutesClostridium100.0100.0100.0
NOF010_GL00373502464784CompleteK01376COG0791unknownunknown100.0100.0100.0
O2.UC44-0_GL00181312449081Lack both endsK01447COG0791unknownunknown100.0100.0100.0
MH0088_GL00373752391841CompleteK01308COG2866unknownunknown100.0100.0100.0
O2.UC15-0_GL00942592371779CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
MH0192_GL01507472419322CompleteK13695COG0791unknownunknown100.0100.0100.0
O2.UC48-0_GL01828202269835Lack 5'-endK01447COG0791unknownunknown100.0100.0100.0
MH0012_GL00061262632289CompleteK01376COG0791unknownunknown100.0100.0100.0
MH0100_GL00459462521259CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0098_GL01349762561829CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0421_GL00578662580910CompleteK01308COG2866unknownunknown100.0100.0100.0
V1.CD6-0-PT_GL01235912597851CompleteK01308COG2866unknownunknown100.0100.0100.0
V1.FI12_GL00760582641793CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0012_GL00750752647091CompleteK01447COG0791FirmicutesDorea100.0100.0100.0
MH0040_GL00407992647395CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0086_GL01186562738169CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0096_GL00341952708657CompleteK01308COG2866unknownunknown100.0100.0100.0
O2.UC41-1_GL02015552715422CompleteK01308COG2866FirmicutesClostridium100.0100.0100.0
MH0292_GL00441772787640CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0337_GL00101152651826CompleteK01308COG2866unknownunknown100.0100.0100.0
T2D-135A_GL00543922842680Lack 3'-endK01376COG0791Bacteroidetesunknown100.0100.0100.0
MH0030_GL00320482707946CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0062_GL00732282768695CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0196_GL00764902770867CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0399_GL00505652728169CompleteK01308COG2866unknownunknown100.0100.0100.0
V1.UC36-0_GL00486892871964CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0026_GL00206592861492CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0298_GL01148792818580CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0094_GL01119472738293CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0308_GL00660932818679CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0447_GL02489402821341CompleteK01308COG2866unknownunknown100.0100.0100.0
445972.ANACOL_022052829074CompleteK01308COG2866FirmicutesAnaerotruncus100.0100.0100.0
V1.UC58-4_GL02375002825424CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0011_GL00110702845395CompleteK01308COG2866unknownunknown100.0100.0100.0
O2.UC1-2_GL01483522932218CompleteK11060COG0791FirmicutesDorea100.0100.0100.0
SZEY-44A_GL01033743034346Lack 5'-endK01308COG2866unknownunknown100.0100.0100.0
V1.UC50-1_GL00779792872188CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
T2D-11A_GL00229052873799CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
MH0359_GL00368502897972CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
MH0382_GL00002882898477CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
MH0329_GL01617102977869CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0150_GL00516003087973Lack 5'-endK01447COG0791FirmicutesButyrivibrio100.0100.0100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyPrevotellaceae-0.3743.93e-631.85e-60
speciesPrevotella_copri-0.3641.41e-593.33e-57
genusPrevotella-0.3589.19e-581.45e-55
genusEggerthella0.3322.77e-493.27e-47
speciesEggerthella_unclassified0.3231.04e-469.82e-45
genusRuminococcus0.3011.77e-401.39e-38
genusBlautia0.2917.29e-384.92e-36
speciesRuminococcus_sp_5_1_39BFAA0.2498.46e-284.99e-26
speciesEggerthella_lenta0.2499.94e-285.21e-26
classClostridia0.2422.06e-268.84e-25
orderClostridiales0.2422.06e-268.84e-25
speciesLachnospiraceae_bacterium_5_1_63FAA0.2313.67e-241.44e-22
speciesBacteroides_plebeius-0.2272.77e-231.01e-21
genusGordonibacter0.2223.23e-221.02e-20
speciesGordonibacter_pamelaeae0.2223.23e-221.02e-20
genusCoprobacillus0.2199.08e-222.68e-20
speciesRuminococcus_bromii0.2181.82e-215.05e-20
familyLachnospiraceae0.2172.48e-216.5e-20
speciesLachnospiraceae_bacterium_1_4_56FAA0.2148.5e-212.11e-19
familySutterellaceae-0.2121.79e-204.22e-19
speciesRuminococcus_torques0.2112.96e-206.65e-19
speciesCoprobacillus_unclassified0.214.81e-201.03e-18
speciesRuminococcus_obeum0.2089.61e-201.97e-18
orderCoriobacteriales0.2053.17e-195.98e-18
familyCoriobacteriaceae0.2053.17e-195.98e-18
orderBurkholderiales-0.2036.77e-191.23e-17
genusLachnospiraceae_noname0.2037.07e-191.24e-17
classBetaproteobacteria-0.2021.11e-181.87e-17
genusAnaerostipes0.1993.47e-185.65e-17
genusAdlercreutzia0.1864.33e-166.59e-15
speciesAdlercreutzia_equolifaciens0.1864.33e-166.59e-15
speciesParaprevotella_xylaniphila-0.1865.37e-167.92e-15
phylumFirmicutes0.1858.76e-161.25e-14
speciesEubacterium_hallii0.1841.11e-151.54e-14
speciesPrevotella_stercorea-0.1841.24e-151.67e-14
speciesEubacterium_sp_3_1_310.1831.42e-151.86e-14
genusParaprevotella-0.1831.58e-152.02e-14
speciesBacteroides_coprocola-0.1831.77e-152.2e-14
speciesParaprevotella_unclassified-0.1822.37e-152.87e-14
phylumBacteroidetes-0.184.34e-154.8e-14
classBacteroidia-0.184.34e-154.8e-14
orderBacteroidales-0.184.34e-154.8e-14
genusDorea0.184.37e-154.8e-14
genusHoldemania0.1788.91e-159.56e-14
familyRuminococcaceae0.1762.06e-142.16e-13
speciesBacteroides_ovatus0.1743.31e-143.4e-13
genusSutterellaceae_unclassified-0.1743.76e-143.78e-13
speciesAnaerostipes_hadrus0.1726.02e-145.92e-13
speciesRuminococcus_gnavus0.1727.18e-146.92e-13
speciesClostridium_ramosum0.171.16e-131.1e-12
speciesBlautia_producta0.171.26e-131.17e-12
classNegativicutes-0.1682.72e-132.42e-12
orderSelenomonadales-0.1682.72e-132.42e-12
speciesStreptococcus_thermophilus0.1657.19e-136.28e-12
speciesDorea_formicigenerans0.1631.15e-129.86e-12
speciesClostridium_leptum0.1631.17e-129.86e-12
speciesDesulfovibrio_piger-0.1621.64e-121.36e-11
genusDesulfovibrio-0.1594.06e-123.3e-11
genusActinomyces0.1595.32e-124.26e-11
speciesClostridium_symbiosum0.1586.58e-125.18e-11
speciesErysipelotrichaceae_bacterium_6_1_450.1577.98e-126.17e-11
speciesClostridium_bolteae0.1578.15e-126.2e-11
phylumActinobacteria0.1561.19e-118.78e-11
classActinobacteria0.1561.19e-118.78e-11
familyActinomycetaceae0.1561.26e-119.15e-11
speciesParaprevotella_clara-0.1561.29e-119.23e-11
speciesOdoribacter_splanchnicus-0.1551.4e-119.86e-11
speciesParabacteroides_merdae-0.1551.85e-111.28e-10
genusOxalobacter-0.1524.35e-112.93e-10
speciesOxalobacter_formigenes-0.1524.35e-112.93e-10
speciesBlautia_hydrogenotrophica0.1524.44e-112.95e-10
speciesClostridium_hathewayi0.1514.96e-113.25e-10
genusOdoribacter-0.1515.57e-113.6e-10
orderActinomycetales0.156.49e-114.14e-10
familyOxalobacteraceae-0.1491.07e-106.73e-10
familyAcidaminococcaceae-0.1471.9e-101.18e-09
genusCatenibacterium-0.1462.28e-101.38e-09
speciesCatenibacterium_mitsuokai-0.1462.28e-101.38e-09
speciesAlistipes_senegalensis-0.1452.77e-101.65e-09
genusPropionibacterium0.1452.93e-101.73e-09
speciesClostridiales_bacterium_1_7_47FAA0.141.3e-097.58e-09
familyPropionibacteriaceae0.1391.7e-099.79e-09
genusMegasphaera-0.1391.78e-091.01e-08
genusSolobacterium0.1382.05e-091.14e-08
speciesSolobacterium_moorei0.1382.05e-091.14e-08
speciesClostridium_clostridioforme0.1382.31e-091.27e-08
speciesEubacterium_biforme-0.1372.45e-091.33e-08
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1373.07e-091.65e-08
speciesMitsuokella_multacida-0.1346.35e-093.37e-08
orderBacillales0.1329.08e-094.76e-08
speciesErysipelotrichaceae_bacterium_2_2_44A0.1321.03e-085.34e-08
speciesClostridium_asparagiforme0.1311.28e-086.57e-08
speciesHaemophilus_parainfluenzae-0.1311.45e-087.36e-08
speciesBifidobacterium_longum0.131.58e-087.93e-08
speciesLachnospiraceae_bacterium_5_1_57FAA0.131.67e-088.21e-08
speciesMegasphaera_unclassified-0.131.67e-088.21e-08
speciesButyrivibrio_crossotus-0.131.91e-089.29e-08
genusHaemophilus-0.1291.94e-089.34e-08
speciesStreptococcus_sanguinis0.1292.07e-089.86e-08
orderPasteurellales-0.1292.11e-089.86e-08
familyPasteurellaceae-0.1292.11e-089.86e-08
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1292.45e-081.13e-07
speciesDialister_invisus0.1282.69e-081.23e-07
speciesMegamonas_unclassified-0.1282.87e-081.3e-07
familyBacillales_noname0.1273.17e-081.41e-07
genusGemella0.1273.17e-081.41e-07
genusMegamonas-0.1273.69e-081.63e-07
speciesBacteroides_stercoris-0.1273.98e-081.74e-07
familyStreptococcaceae0.1255.82e-082.52e-07
genusStreptococcus0.1256.17e-082.65e-07
familyClostridiaceae0.1247.05e-083e-07
familyEubacteriaceae0.1247.29e-083.07e-07
genusMitsuokella-0.1247.51e-083.14e-07
speciesMitsuokella_unclassified-0.1247.72e-083.2e-07
genusEubacterium0.1247.96e-083.27e-07
genusClostridium0.1231.01e-074.11e-07
speciesBacteroides_coprophilus-0.1221.24e-075e-07
speciesLactobacillus_ruminis-0.1211.54e-076.16e-07
speciesAlistipes_shahii-0.121.92e-077.62e-07
genusPhascolarctobacterium-0.1192.4e-079.36e-07
speciesPhascolarctobacterium_succinatutens-0.1192.4e-079.36e-07
genusFlavonifractor0.1173.53e-071.35e-06
speciesFlavonifractor_plautii0.1173.53e-071.35e-06
familyClostridiales_Family_XI_Incertae_Sedis0.1174.18e-071.59e-06
speciesClostridium_bartlettii0.1174.28e-071.62e-06
speciesAnaerotruncus_colihominis0.1164.67e-071.75e-06
speciesBacteroides_faecis-0.1165.34e-071.98e-06
speciesSubdoligranulum_sp_4_3_54A2FAA0.1155.59e-072.05e-06
speciesLactococcus_lactis0.1155.61e-072.05e-06
speciesEubacterium_ramulus0.1156.26e-072.27e-06
genusBifidobacterium0.1147.75e-072.79e-06
speciesPropionibacterium_freudenreichii0.1147.98e-072.85e-06
speciesMegamonas_funiformis-0.1138.67e-073.08e-06
phylumProteobacteria-0.1139.17e-073.23e-06
speciesBacteroides_eggerthii-0.1131e-063.5e-06
orderBifidobacteriales0.1131.03e-063.55e-06
familyBifidobacteriaceae0.1131.03e-063.55e-06
speciesMegamonas_hypermegale-0.1131.07e-063.66e-06
speciesErysipelotrichaceae_bacterium_21_30.1121.24e-064.21e-06
speciesStreptococcus_australis0.111.88e-066.34e-06
speciesHoldemania_filiformis0.111.98e-066.63e-06
speciesDorea_longicatena0.112.02e-066.71e-06
speciesEggerthella_sp_1_3_56FAA0.1083.01e-069.94e-06
speciesFusobacterium_ulcerans0.1063.96e-061.3e-05
orderAeromonadales-0.1064.78e-061.56e-05
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1055.64e-061.82e-05
speciesMegasphaera_elsdenii-0.1037.38e-062.37e-05
genusClostridiaceae_noname0.1037.59e-062.4e-05
speciesClostridiaceae_bacterium_JC1180.1037.59e-062.4e-05
genusButyricimonas-0.1029.74e-063.04e-05
speciesButyricimonas_synergistica-0.1029.74e-063.04e-05
speciesMegamonas_rupellensis-0.1021e-053.11e-05
genusLeuconostoc0.1011.11e-053.42e-05
familyVeillonellaceae-0.1011.2e-053.68e-05
familyBacteroidaceae0.11.58e-054.78e-05
genusBacteroides0.11.58e-054.78e-05
speciesClostridium_citroniae0.0991.91e-055.74e-05
speciesSutterella_wadsworthensis-0.0991.95e-055.83e-05
orderLactobacillales0.0982.07e-056.14e-05
genusLactococcus0.0982.12e-056.25e-05
familyEnterococcaceae0.0972.75e-058.06e-05
genusBarnesiella-0.0963.18e-059.21e-05
speciesBarnesiella_intestinihominis-0.0963.18e-059.21e-05
classBacilli0.0963.37e-059.7e-05
genusEnterococcus0.0953.56e-050.000101
genusButyrivibrio-0.0953.56e-050.000101
genusSutterella-0.0953.59e-050.000101
genusSuccinatimonas-0.0935.3e-050.000148
speciesSuccinatimonas_hippei-0.0935.3e-050.000148
speciesLactobacillus_mucosae-0.0935.59e-050.000155
speciesBacteroides_pectinophilus-0.0935.82e-050.000161
genusDialister0.0926.51e-050.000179
speciesLactobacillus_delbrueckii0.0926.99e-050.000191
speciesBifidobacterium_animalis0.0927.07e-050.000192
speciesEnterococcus_faecium0.0918.35e-050.000225
familyPeptostreptococcaceae0.099.12e-050.000245
speciesClostridium_spiroforme0.099.5e-050.000253
speciesErysipelotrichaceae_bacterium_3_1_530.099.55e-050.000253
speciesCoprococcus_comes0.0890.0001170.000309
speciesLactobacillus_casei_paracasei0.0880.0001310.000344
familySuccinivibrionaceae-0.0880.0001340.000349
speciesParabacteroides_distasonis-0.0880.0001350.00035
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speciesEubacterium_eligens-0.0830.000320.000791
speciesLachnospiraceae_bacterium_6_1_63FAA0.0830.0003220.000792
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speciesLactobacillus_plantarum0.0820.0003830.000922
speciesLactobacillus_rhamnosus0.0820.0003920.000939
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speciesKlebsiella_pneumoniae-0.0810.0004280.00102
speciesStreptococcus_parasanguinis0.0810.0004370.00103
genusFaecalibacterium-0.0810.0004690.0011
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speciesClostridium_perfringens-0.080.0005690.0013
speciesStreptococcus_anginosus0.0790.000580.00132
genusPeptoniphilus0.0790.0006220.00141
speciesBacteroides_fragilis0.0780.0007570.00171
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speciesEnterobacter_aerogenes-0.0760.0010.00219
speciesBacteroides_salanitronis-0.0760.001020.00222
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speciesAcidaminococcus_fermentans-0.0710.002110.00431
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speciesCollinsella_tanakaei-0.070.002390.00484
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speciesVeillonella_dispar-0.0690.002670.00536
speciesGemella_morbillorum0.0690.002710.00542
speciesRuminococcus_sp_JC3040.0690.0030.00597
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genusKlebsiella-0.0670.00350.00691
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genusParvimonas0.0670.003890.00761
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speciesRothia_mucilaginosa0.0650.004760.00925
speciesClostridium_nexile0.0650.00490.00948
genusRothia0.0640.005530.0107
familyMicrococcaceae0.0630.006020.0116
speciesRoseburia_intestinalis0.0630.006190.0118
speciesBacteroides_thetaiotaomicron0.0630.006240.0119
speciesStreptococcus_mitis_oralis_pneumoniae0.0630.006680.0127
speciesParabacteroides_johnsonii-0.0630.006760.0128
speciesAggregatibacter_segnis-0.0630.00680.0128
genusVeillonella-0.0630.006820.0128
genusSubdoligranulum0.0620.00750.014
speciesLachnospiraceae_bacterium_1_1_57FAA0.0620.007570.0141
speciesAcidaminococcus_intestini-0.0620.007750.0143
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familyMethanobacteriaceae-0.0610.007960.0145
genusPantoea-0.0610.008010.0145
speciesPantoea_unclassified-0.0610.008010.0145
speciesLachnospiraceae_bacterium_7_1_58FAA0.0610.008460.0153
speciesAnaerostipes_unclassified0.0610.008850.0159
genusMethanosphaera-0.0610.008870.0159
speciesMethanosphaera_stadtmanae-0.0610.008870.0159
speciesStreptococcus_gordonii0.060.00950.0169
speciesEubacterium_ventriosum0.060.009810.0174
genusParasutterella-0.0590.01040.0183
speciesParasutterella_excrementihominis-0.0590.01040.0183
orderPseudomonadales0.0590.01090.0191
speciesClostridium_sp_KLE_17550.0590.01090.0191
speciesParabacteroides_sp_D13-0.0580.01140.0198
speciesOscillibacter_sp_KLE_17280.0580.01140.0198
speciesMethanobrevibacter_smithii-0.0580.01160.0201
speciesSubdoligranulum_unclassified0.0580.0120.0207
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orderErysipelotrichales0.0570.01410.024
familyErysipelotrichaceae0.0570.01410.024
genusMethanobrevibacter-0.0560.01580.0268
phylumEuryarchaeota-0.0550.01650.0279
speciesBacteroides_finegoldii-0.0550.01660.028
speciesStreptococcus_vestibularis0.0550.01730.0291
speciesStreptococcus_mutans0.0550.01820.0305
speciesStreptococcus_pasteurianus-0.0540.01930.0322
speciesMethanobrevibacter_unclassified-0.0540.02050.0341
genusAggregatibacter-0.0530.02240.0371
genusActinobacillus-0.0530.02280.0374
speciesActinobacillus_unclassified-0.0530.02280.0374
speciesTuricibacter_unclassified0.0530.02280.0374
speciesBacteroides_barnesiae-0.0520.02440.0399
classDeltaproteobacteria-0.0520.02490.0402
orderDesulfovibrionales-0.0520.02490.0402
familyDesulfovibrionaceae-0.0520.02490.0402
genusPeptostreptococcus0.0520.02540.0409
speciesDialister_succinatiphilus-0.0510.0260.0417
speciesCampylobacter_concisus-0.0510.02690.0429
speciesOlsenella_unclassified-0.0510.02690.0429
speciesAnaerotruncus_unclassified-0.0510.02820.0448
speciesAlistipes_finegoldii-0.0510.02880.0456
speciesPrevotella_bivia0.050.03170.05
familyRikenellaceae-0.0490.03410.0533
genusAlistipes-0.0490.03410.0533
speciesPeptostreptococcus_anaerobius0.0490.03410.0533
genusTuricibacter0.0490.03440.0536
speciesLactobacillus_salivarius-0.0470.04120.064
speciesLactobacillus_sanfranciscensis0.0470.04380.0678
phylumSynergistetes-0.0460.04470.0683
classSynergistia-0.0460.04470.0683
orderSynergistales-0.0460.04470.0683
familySynergistaceae-0.0460.04470.0683
familyOscillospiraceae0.0460.04770.0724
genusOscillibacter0.0460.04770.0724
genusCoprococcus0.0450.05060.0765
genusAcidaminococcaceae_unclassified-0.0450.05160.0778
speciesEnterococcus_faecalis0.0440.05630.0846
speciesBifidobacterium_angulatum-0.0430.06180.0926
speciesBacteroides_xylanisolvens0.0430.0640.0956
genusStaphylococcus0.0430.06510.0969
speciesVeillonella_parvula-0.0420.06680.0991
genusButyricicoccus0.0420.07040.104
speciesButyricicoccus_pullicaecorum0.0420.07040.104
speciesPorphyromonas_asaccharolytica0.0410.07390.109
classEpsilonproteobacteria-0.0410.07730.113
orderCampylobacterales-0.0410.07730.113
familyStaphylococcaceae0.040.0810.118
orderEnterobacteriales-0.040.0820.119
familyEnterobacteriaceae-0.040.0820.119
speciesHaemophilus_paraphrohaemolyticus-0.040.08440.122
speciesBacteroides_vulgatus-0.0390.09230.133
genusOlsenella-0.0380.10.143
speciesLactobacillus_amylovorus-0.0380.1020.146
speciesOscillibacter_unclassified0.0370.1080.154
speciesBacteroides_sp_2_1_220.0370.1120.159
speciesTuricibacter_sanguinis0.0350.1270.18
speciesBacteroides_dorei-0.0350.130.184
speciesEubacterium_siraeum-0.0350.1320.186
speciesPrevotella_buccae-0.0350.1340.188
genusPyramidobacter-0.0350.1350.189
speciesPyramidobacter_piscolens-0.0350.1350.189
speciesStreptococcus_infantarius-0.0340.1360.189
genusCollinsella0.0340.1390.193
speciesCoprobacillus_sp_D60.0340.1410.195
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0330.1510.208
speciesEubacterium_limosum0.0320.1670.23
speciesLachnospiraceae_bacterium_2_1_46FAA0.0320.1680.23
speciesBacteroides_salyersiae-0.0320.1680.23
speciesCoprococcus_eutactus-0.0310.1770.241
speciesOscillibacter_sp_KLE_17450.0310.1830.249
speciesDorea_unclassified-0.030.1950.264
speciesLactobacillus_oris-0.030.1960.265
genusEscherichia-0.030.1980.267
speciesEscherichia_coli-0.030.2010.27
familySiphoviridae0.0290.2080.279
speciesSlackia_piriformis-0.0280.2190.293
speciesLactobacillus_vaginalis-0.0280.2240.299
speciesCitrobacter_unclassified0.0280.2270.301
genusPorphyromonas0.0280.2280.301
genusCitrobacter0.0280.2280.301
genusRuminococcaceae_noname-0.0280.2330.306
speciesRuminococcaceae_bacterium_D16-0.0280.2330.306
genusCoriobacteriaceae_noname0.0270.2360.309
speciesBacteroides_sp_1_1_60.0270.2370.31
orderCaudovirales0.0270.240.313
speciesCoriobacteriaceae_bacterium_phI0.0270.2450.319
speciesLactococcus_phage_P6800.0260.2530.328
genusProteus-0.0260.2560.331
speciesC2likevirus_unclassified0.0260.2590.334
familyCampylobacteraceae-0.0260.260.334
phylumVerrucomicrobia0.0260.2680.339
classVerrucomicrobiae0.0260.2680.339
orderVerrucomicrobiales0.0260.2680.339
familyVerrucomicrobiaceae0.0260.2680.339
genusAkkermansia0.0260.2680.339
speciesAkkermansia_muciniphila0.0260.2680.339
speciesBacteroides_sp_3_1_19-0.0260.2690.339
speciesEscherichia_unclassified-0.0250.2730.344
speciesCollinsella_aerofaciens0.0250.2740.344
speciesCoprobacillus_sp_29_10.0250.2760.345
speciesBifidobacterium_dentium0.0250.2760.345
speciesStreptococcus_phage_Sfi210.0250.2770.345
speciesLactococcus_garvieae-0.0250.2780.345
speciesKlebsiella_sp_MS_92_3-0.0250.2830.351
speciesFusobacterium_varium0.0250.2840.351
speciesRoseburia_hominis0.0250.2850.351
speciesEubacterium_cylindroides-0.0250.2870.353
genusC2likevirus0.0250.290.356
genusBurkholderiales_noname-0.0240.2920.356
speciesBurkholderiales_bacterium_1_1_47-0.0240.2920.356
speciesAlistipes_sp_HGB50.0240.2960.36
speciesBifidobacterium_pseudocatenulatum0.0240.2980.362
familyLactobacillaceae0.0240.3020.364
genusLambdalikevirus0.0240.3020.364
speciesRuminococcus_lactaris-0.0240.3020.364
speciesBacteroides_sp_4_3_47FAA-0.0230.3120.375
genusCampylobacter-0.0230.3130.375
genusMyoviridae_noname0.0230.3160.378
genusSiphoviridae_noname0.0230.3180.379
familyBurkholderiales_noname-0.0230.3240.385
speciesBifidobacterium_catenulatum0.0230.3260.387
phylumViruses_noname0.0230.3280.387
classViruses_noname0.0230.3280.387
speciesCollinsella_unclassified0.0220.3470.408
speciesLactobacillus_gasseri-0.0220.3510.412
speciesAcidaminococcus_unclassified-0.0210.3550.416
speciesPorphyromonas_uenonis0.0210.3590.419
speciesLactobacillus_reuteri0.0210.3650.425
genusLactobacillus0.0210.370.43
speciesMegasphaera_micronuciformis-0.020.3760.436
speciesLactobacillus_crispatus-0.020.3820.442
speciesLactococcus_phage_936_sensu_lato-0.020.3890.449
speciesBifidobacterium_breve-0.020.3920.451
speciesClostridium_sp_ATCC_BAA_4420.020.3950.454
familyMyoviridae-0.0190.4070.465
genusAnaerotruncus-0.0190.4070.465
speciesRoseburia_unclassified0.0180.4330.494
speciesKlebsiella_phage_KP36-0.0180.4440.504
speciesLactococcus_phage_phi7-0.0180.4440.504
genusFusobacterium-0.0180.4470.506
speciesButyrivibrio_unclassified0.0170.450.508
speciesBacteroides_cellulosilyticus0.0170.4650.524
speciesParabacteroides_unclassified0.0170.4690.527
speciesBacteroides_caccae-0.0170.4750.533
speciesOdoribacter_unclassified0.0160.4770.534
speciesLeuconostoc_lactis0.0160.490.547
speciesOdoribacter_laneus0.0160.4950.549
phylumFusobacteria-0.0160.4970.549
classFusobacteriia-0.0160.4970.549
orderFusobacteriales-0.0160.4970.549
orderViruses_noname-0.0150.5080.56
familyFusobacteriaceae-0.0150.5250.578
speciesBacteroides_oleiciplenus-0.0140.5380.591
speciesKlebsiella_unclassified-0.0140.5550.608
genusSlackia-0.0130.5610.613
genusTunalikevirus-0.0130.5660.617
speciesAlistipes_onderdonkii0.0130.5680.618
speciesCitrobacter_freundii0.0130.5740.623
speciesWeissella_confusa-0.0130.5790.627
speciesHaemophilus_sputorum-0.0130.5820.629
speciesStreptococcus_lutetiensis-0.0120.5890.635
speciesAlistipes_sp_AP110.0110.6210.667
speciesRoseburia_inulinivorans-0.0110.6220.667
familyViruses_noname-0.0110.6390.682
genusViruses_noname-0.0110.6390.682
speciesBacteroides_fluxus-0.010.6510.694
speciesKlebsiella_oxytoca0.010.6570.698
familyPodoviridae0.010.6770.718
speciesBacteroides_intestinalis-0.0090.7010.742
speciesLachnospiraceae_bacterium_3_1_46FAA0.0080.7150.755
speciesLactobacillus_fermentum0.0080.7240.763
speciesPeptostreptococcus_stomatis0.0080.7390.776
speciesCollinsella_intestinalis0.0080.740.776
speciesLactococcus_phage_bIL67-0.0080.7450.78
speciesBilophila_wadsworthia0.0070.7520.785
genusPseudoflavonifractor-0.0060.7850.816
speciesPseudoflavonifractor_capillosus-0.0060.7850.816
speciesBilophila_unclassified-0.0060.7960.826
speciesEnterobacteria_phage_HK544-0.0040.8460.876
speciesSutterella_parvirubra0.0040.8630.891
speciesFusobacterium_nucleatum-0.0040.8770.904
speciesWeissella_cibaria-0.0030.8850.91
genusBilophila-0.0030.8920.912
genusMorganella0.0030.8950.912
speciesMorganella_morganii0.0030.8950.912
speciesBifidobacterium_adolescentis-0.0030.8950.912
genusWeissella-0.0030.8980.913
speciesBifidobacterium_bifidum-0.0020.9180.931
speciesProteus_mirabilis-0.0020.920.931
speciesAlistipes_unclassified0.0020.9210.931
genusErysipelotrichaceae_noname-0.0020.9410.949
speciesParabacteroides_sp_20_30.0020.9450.951
speciesLactococcus_phage_jm20.0010.970.974
speciesPeptostreptococcaceae_noname_unclassified-0.0010.9780.98
speciesBacteroides_nordii0.00.9920.992
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
ObesityDenmark1691230.1004738375110.09207639915090.0503719879674502316.517
Type II diabetesSweden53920.1616565047910.1413702725980.061971433406421937.42635
Ulcerative colitisSpain78660.10445583330.1166069428040.2654801021081273642.0136
Colorectal cancerAustria64350.1459755791680.1646746259660.283598685251158239.1866
Type II diabetesChina1831850.1141734916670.1085949936590.3561696347371782258.8982
Crohns diseaseSpain17660.1078596488360.1166069428040.6804435693942642487.8604
Type II diabetesDenmark752770.1020098388490.09733670472720.7566910731942581284.6101
Liver cirrhosisChina1201140.1057561246260.09975286362580.8834267744142842295.4752
Rheumatoid arthritisChina127980.1293254626560.1284094049910.9481240813042872895.8015
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382