MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-03-19 08:52:50 PST
Job id & description: 1776, dluni_ref.igc.80.5
Query type: protein
Count queries & homologs: 53, 53
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
MH0335_GL00565303220891Lack 5'-endK01447COG0791FirmicutesVeillonella100.0100.0100.0
DLM018_GL00342283292102Lack both endsK01308COG2866unknownunknown100.0100.0100.0
MH0038_GL00404863264484CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0425_GL01081373303061CompleteK01447;K13694COG0791FirmicutesVeillonella100.0100.0100.0
879309.HMPREF9199_12223312176CompleteK01447COG0791FirmicutesVeillonella100.0100.0100.0
V1.CD54-0_GL01412903371459CompleteK01447COG0791;COG3103unknownunknown100.0100.0100.0
DLM009_GL00109153407103CompleteK13694COG0791FirmicutesVeillonella100.0100.0100.0
MH0236_GL00520403398123CompleteK13694COG0791FirmicutesVeillonella100.0100.0100.0
V1.UC55-0_GL00216593476952Lack 3'-endK01308COG2866unknownunknown100.0100.0100.0
MH0357_GL00152553470101CompleteK01308COG2866unknownunknown100.0100.0100.0
MH0329_GL01055923469619CompleteK01308COG2866unknownunknown100.0100.0100.0
V1.CD37-4_GL00092243289841CompleteK01447COG0791FirmicutesRuminococcus100.0100.0100.0
T2D-122A_GL00869703443535CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0126_GL00105873465969CompleteK01308COG2866unknownunknown100.0100.0100.0
T2D-102A_GL00914673443322CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0280_GL00244043561024CompleteK13694COG0791FirmicutesMitsuokella100.0100.0100.0
MH0161_GL01082123539999CompleteK01447COG0791Firmicutesunknown100.0100.0100.0
O2.UC55-2_GL01488103622882Lack 5'-endK01447COG0791FirmicutesRoseburia100.0100.0100.0
457421.CBFG_020343630722CompleteK01447COG0791;COG3103Firmicutesunknown100.0100.0100.0
MH0437_GL02251873639989CompleteK01308COG2866unknownunknown100.0100.0100.0
T2D-61A_GL00190803628486CompleteK01447COG0791;COG3103Firmicutesunknown100.0100.0100.0
MH0220_GL02157083673029CompleteK13694COG0791FirmicutesMitsuokella100.0100.0100.0
MH0429_GL01754693696241Lack 5'-endK01447COG0791Firmicutesunknown100.0100.0100.0
O2.UC15-2_GL01341373509123CompleteK01447COG0791FirmicutesRuminococcus100.0100.0100.0
DLF012_GL00392453626267CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0408_GL02584593828628Lack 5'-endK01447COG0791FirmicutesButyrivibrio100.0100.0100.0
O2.UC46-0_GL00094213812247CompleteK01447COG0791FirmicutesBlautia100.0100.0100.0
O2.UC1-2_GL01574583660059CompleteK01447COG0791FirmicutesRuminococcus100.0100.0100.0
O2.UC31-0_GL00514093792559Lack 5'-endK01447COG0791FirmicutesRuminococcus100.0100.0100.0
MH0436_GL00766693734027CompleteK01447COG0791FirmicutesRuminococcus100.0100.0100.0
O2.UC40-1_GL00922363831129CompleteK01447COG0791Firmicutesunknown100.0100.0100.0
O2.UC27-1_GL01122973811712CompleteK01447COG0791FirmicutesRuminococcus100.0100.0100.0
MH0448_GL01098174072991Lack 3'-endK13694COG0791FirmicutesMitsuokella100.0100.0100.0
MH0395_GL00365504071397Lack 5'-endK01447COG0791Firmicutesunknown100.0100.0100.0
V1.FI36_GL00895214098202Lack 5'-endK01308COG2866unknownunknown100.0100.0100.0
MH0371_GL01540033866144Lack 5'-endK01447COG0791unknownunknown100.0100.0100.0
MH0442_GL00670383948175CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0456_GL01584264178423CompleteunknownCOG0791FirmicutesButyrivibrio100.0100.0100.0
MH0012_GL01496724146763Completeunknownunknownunknownunknown100.0100.0100.0
MH0088_GL00650604191373CompleteK01447COG0791FirmicutesClostridium100.0100.0100.0
MH0268_GL01210834216770CompleteK01447COG0791;COG0739unknownunknown100.0100.0100.0
O2.UC22-1_GL01334174073896CompleteK01447COG0791unknownunknown100.0100.0100.0
O2.UC32-1_GL00357874201283CompleteK01447COG0791Firmicutesunknown100.0100.0100.0
MH0157_GL01100014192942CompleteK01447COG0791Firmicutesunknown100.0100.0100.0
O2.UC27-2_GL00960434353394Lack 5'-endK01447COG0791Firmicutesunknown100.0100.0100.0
MH0020_GL00010484146928CompleteK01447COG0791FirmicutesClostridium100.0100.0100.0
MH0456_GL01309624374628Lack 5'-endK01447COG0791Firmicutesunknown100.0100.0100.0
MH0394_GL00143164439563Lack both endsK01447COG0791;COG0739FirmicutesRuminococcus100.0100.0100.0
MH0457_GL01938474330174CompleteK01447COG0791FirmicutesMitsuokella100.0100.0100.0
O2.UC23-1_GL00421314679300Lack 5'-endK01447COG0791;COG0739FirmicutesEubacterium100.0100.0100.0
MH0092_GL00249904620433CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0359_GL00584714626842CompleteK01447COG0791unknownunknown100.0100.0100.0
MH0448_GL01730984752355Lack 3'-endK13694COG0791FirmicutesMitsuokella100.0100.0100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumBacteroidetes-0.5973.09e-1815.08e-179
classBacteroidia-0.5973.23e-1815.08e-179
orderBacteroidales-0.5973.23e-1815.08e-179
phylumFirmicutes0.545.95e-1427.02e-140
speciesRuminococcus_sp_5_1_39BFAA0.5237.75e-1327.32e-130
phylumActinobacteria0.5211.29e-1308.7e-129
classActinobacteria0.5211.29e-1308.7e-129
speciesRuminococcus_obeum0.5184.04e-1292.38e-127
genusBlautia0.5187.33e-1293.84e-127
speciesLachnospiraceae_bacterium_5_1_63FAA0.4921.85e-1148.73e-113
orderCoriobacteriales0.4913.22e-1141.27e-112
familyCoriobacteriaceae0.4913.22e-1141.27e-112
genusDorea0.4893.03e-1131.1e-111
speciesEubacterium_hallii0.4881.16e-1123.91e-111
orderLactobacillales0.481.81e-1085.63e-107
classBacilli0.481.91e-1085.63e-107
familyStreptococcaceae0.4799.76e-1082.71e-106
genusStreptococcus0.4759.25e-1062.43e-104
genusAnaerostipes0.4721.88e-1044.67e-103
speciesAnaerostipes_hadrus0.4635.44e-1001.28e-98
orderBifidobacteriales0.4373.64e-887.81e-87
familyBifidobacteriaceae0.4373.64e-887.81e-87
genusBifidobacterium0.4341.06e-862.18e-85
speciesDorea_formicigenerans0.4262.85e-835.61e-82
familyLachnospiraceae0.4259.11e-831.72e-81
classClostridia0.4156.53e-791.14e-77
orderClostridiales0.4156.54e-791.14e-77
familyActinomycetaceae0.4115.75e-779.69e-76
genusActinomyces0.4084.05e-766.59e-75
familyBacteroidaceae-0.3984.31e-726.56e-71
genusBacteroides-0.3984.31e-726.56e-71
speciesStreptococcus_salivarius0.3955.1e-717.52e-70
genusRuminococcus0.3891e-681.43e-67
speciesRuminococcus_torques0.3854.33e-676.01e-66
orderActinomycetales0.3846.18e-678.33e-66
speciesDorea_longicatena0.3798.67e-651.14e-63
speciesStreptococcus_parasanguinis0.3684.49e-615.73e-60
familyPorphyromonadaceae-0.3678.74e-611.09e-59
genusParabacteroides-0.3661.68e-602.03e-59
genusLachnospiraceae_noname0.3631.73e-592.01e-58
speciesBifidobacterium_longum0.3631.75e-592.01e-58
speciesStreptococcus_thermophilus0.363.45e-583.88e-57
familyBacillales_noname0.3437.95e-538.53e-52
genusGemella0.3437.95e-538.53e-52
speciesStreptococcus_sanguinis0.3422.08e-522.18e-51
orderBacillales0.3375.6e-515.75e-50
speciesCoprococcus_comes0.3261.68e-471.69e-46
familyRuminococcaceae0.3161.04e-441.02e-43
genusCollinsella0.3153.09e-442.98e-43
speciesStreptococcus_vestibularis0.3138.47e-448e-43
speciesCollinsella_aerofaciens0.3021.03e-409.53e-40
genusEggerthella0.3011.94e-401.76e-39
genusSolobacterium0.2963.83e-393.35e-38
speciesSolobacterium_moorei0.2963.83e-393.35e-38
speciesEggerthella_lenta0.2893.56e-373.06e-36
familyLactobacillaceae0.2885.16e-374.35e-36
speciesEubacterium_ramulus0.2886.05e-375.01e-36
familyRikenellaceae-0.2871.07e-368.56e-36
genusAlistipes-0.2871.07e-368.56e-36
speciesEggerthella_unclassified0.2853.11e-362.45e-35
genusLactobacillus0.2813.17e-352.45e-34
genusCoprococcus0.284.53e-353.45e-34
speciesOdoribacter_splanchnicus-0.2773.08e-342.31e-33
genusRothia0.2717.5e-335.53e-32
speciesStreptococcus_anginosus0.2718.24e-335.98e-32
familyMicrococcaceae0.2718.69e-336.21e-32
genusOdoribacter-0.2719.35e-336.59e-32
genusAdlercreutzia0.2678.37e-325.73e-31
speciesAdlercreutzia_equolifaciens0.2678.37e-325.73e-31
genusGordonibacter0.2661.19e-317.91e-31
speciesGordonibacter_pamelaeae0.2661.19e-317.91e-31
speciesStreptococcus_gordonii0.2635.82e-313.82e-30
speciesCoprococcus_catus0.2595.82e-303.76e-29
speciesRothia_mucilaginosa0.2589.17e-305.85e-29
familyPeptostreptococcaceae0.2531.15e-287.24e-28
speciesStreptococcus_mitis_oralis_pneumoniae0.2512.33e-281.45e-27
speciesStreptococcus_mutans0.255.03e-283.08e-27
speciesAlistipes_shahii-0.2481.21e-277.32e-27
speciesBacteroides_ovatus-0.2471.82e-271.09e-26
classErysipelotrichia0.2472.36e-271.36e-26
orderErysipelotrichales0.2472.36e-271.36e-26
familyErysipelotrichaceae0.2472.36e-271.36e-26
speciesErysipelotrichaceae_bacterium_21_30.2472.67e-271.52e-26
speciesBacteroides_thetaiotaomicron-0.2472.77e-271.56e-26
speciesBlautia_hydrogenotrophica0.2431.31e-267.27e-26
orderBurkholderiales-0.2423e-261.65e-25
genusPeptostreptococcus0.247.21e-263.91e-25
classBetaproteobacteria-0.2372.71e-251.45e-24
genusPeptostreptococcaceae_noname0.2349.32e-254.94e-24
familyVeillonellaceae0.2331.97e-241.03e-23
speciesBacteroides_xylanisolvens-0.237.24e-243.76e-23
speciesLachnospiraceae_bacterium_1_4_56FAA0.2265.34e-232.74e-22
speciesErysipelotrichaceae_bacterium_2_2_44A0.2231.55e-227.87e-22
familySutterellaceae-0.227.26e-223.65e-21
familyEubacteriaceae0.2181.33e-216.61e-21
genusEubacterium0.2181.63e-218.01e-21
speciesBifidobacterium_adolescentis0.2172.09e-211.02e-20
genusErysipelotrichaceae_noname0.2172.24e-211.08e-20
classNegativicutes0.2131.02e-204.81e-20
orderSelenomonadales0.2131.02e-204.81e-20
speciesParabacteroides_merdae-0.2131.18e-205.51e-20
familyEnterococcaceae0.2112.72e-201.26e-19
genusEnterococcus0.2112.98e-201.37e-19
speciesStreptococcus_australis0.2113.22e-201.46e-19
speciesBifidobacterium_dentium0.2113.26e-201.47e-19
speciesCoprobacillus_unclassified0.214.47e-201.99e-19
speciesBifidobacterium_animalis0.215.42e-202.39e-19
genusCoprobacillus0.2071.42e-196.21e-19
speciesLactobacillus_casei_paracasei0.2062.78e-191.2e-18
speciesBlautia_producta0.2037e-193e-18
speciesClostridium_ramosum0.2038.06e-193.43e-18
speciesLactobacillus_delbrueckii0.2011.66e-187e-18
speciesClostridium_bartlettii0.1942.49e-171.04e-16
speciesAlistipes_putredinis-0.1924.8e-171.99e-16
familyClostridiales_Family_XI_Incertae_Sedis0.199.95e-174.08e-16
speciesBacteroides_vulgatus-0.191.06e-164.31e-16
speciesPropionibacterium_freudenreichii0.1874.09e-161.65e-15
speciesBacteroides_uniformis-0.1821.95e-157.8e-15
speciesLactococcus_lactis0.1813.04e-151.21e-14
speciesErysipelotrichaceae_bacterium_6_1_450.1796.19e-152.43e-14
speciesRuminococcus_gnavus0.1771.46e-145.7e-14
genusLactococcus0.1761.93e-147.47e-14
speciesLactobacillus_rhamnosus0.1743.33e-141.28e-13
speciesEnterococcus_faecium0.1734.59e-141.75e-13
genusLeuconostoc0.1682.3e-138.68e-13
genusParasutterella-0.1673.87e-131.44e-12
speciesParasutterella_excrementihominis-0.1673.87e-131.44e-12
genusPropionibacterium0.1665.45e-132.01e-12
speciesPeptostreptococcus_stomatis0.1656.53e-132.39e-12
genusOlsenella0.1649.12e-133.31e-12
familyLeuconostocaceae0.1631.52e-125.47e-12
speciesAlistipes_finegoldii-0.1631.53e-125.47e-12
speciesBacteroides_stercoris-0.1621.84e-126.53e-12
speciesLachnospiraceae_bacterium_5_1_57FAA0.1595.31e-121.87e-11
speciesFusobacterium_nucleatum0.1586.05e-122.12e-11
speciesGemella_morbillorum0.1577.49e-122.6e-11
speciesLactobacillus_gasseri0.1579.57e-123.29e-11
speciesEggerthella_sp_1_3_56FAA0.1579.62e-123.29e-11
speciesRuminococcus_bromii0.1561.3e-114.41e-11
speciesLachnospiraceae_bacterium_2_1_58FAA0.1551.41e-114.75e-11
speciesBifidobacterium_catenulatum0.1551.78e-115.96e-11
genusParvimonas0.1533.23e-111.07e-10
speciesParvimonas_unclassified0.1533.27e-111.08e-10
speciesBifidobacterium_bifidum0.1499.61e-113.15e-10
speciesBacteroides_nordii-0.1481.21e-103.94e-10
familyOscillospiraceae-0.1471.59e-105.11e-10
genusOscillibacter-0.1471.59e-105.11e-10
genusBurkholderiales_noname-0.1471.85e-105.86e-10
speciesBurkholderiales_bacterium_1_1_47-0.1471.85e-105.86e-10
familyBurkholderiales_noname-0.1461.95e-106.14e-10
speciesLactobacillus_fermentum0.1461.98e-106.19e-10
speciesClostridium_leptum0.1452.79e-108.66e-10
genusSiphoviridae_noname0.1427.66e-102.36e-09
speciesCampylobacter_concisus0.141.1e-093.37e-09
speciesOlsenella_unclassified0.1391.76e-095.36e-09
speciesDialister_invisus0.1372.71e-098.2e-09
speciesEnterococcus_faecalis0.1363.51e-091.06e-08
speciesBacteroides_cellulosilyticus-0.1354.51e-091.35e-08
speciesOscillibacter_unclassified-0.1355.15e-091.53e-08
genusClostridium0.1346.11e-091.8e-08
speciesLachnospiraceae_bacterium_1_1_57FAA0.1346.14e-091.8e-08
familyClostridiaceae0.1321.01e-082.94e-08
genusButyricimonas-0.1321.02e-082.94e-08
speciesButyricimonas_synergistica-0.1321.02e-082.94e-08
familyPropionibacteriaceae0.1311.32e-083.78e-08
speciesParabacteroides_distasonis-0.1311.42e-084.04e-08
speciesBacteroides_intestinalis-0.131.7e-084.8e-08
phylumViruses_noname0.131.89e-085.28e-08
classViruses_noname0.131.89e-085.28e-08
speciesLactobacillus_plantarum0.1292.22e-086.16e-08
genusDialister0.1274.01e-081.11e-07
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1255.62e-081.54e-07
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1247.84e-082.14e-07
speciesRuminococcus_sp_JC3040.1231.03e-072.79e-07
genusMegamonas0.1221.22e-073.29e-07
speciesMegamonas_unclassified0.1221.29e-073.46e-07
speciesOscillibacter_sp_KLE_1728-0.121.92e-075.12e-07
speciesMegamonas_hypermegale0.1173.54e-079.39e-07
speciesClostridium_bolteae0.1173.7e-079.76e-07
speciesBacteroides_finegoldii-0.1165.06e-071.33e-06
speciesLachnospiraceae_bacterium_6_1_63FAA0.1165.28e-071.38e-06
speciesLactococcus_phage_P6800.1165.45e-071.41e-06
speciesAlistipes_senegalensis-0.1139.87e-072.55e-06
orderCaudovirales0.1131.06e-062.7e-06
speciesAlistipes_onderdonkii-0.1131.06e-062.7e-06
speciesMegasphaera_micronuciformis0.1121.25e-063.17e-06
speciesLactobacillus_salivarius0.1121.31e-063.31e-06
speciesParabacteroides_goldsteinii-0.1111.48e-063.72e-06
genusHoldemania0.1111.57e-063.92e-06
orderPseudomonadales0.111.81e-064.5e-06
speciesEubacterium_rectale0.1092.55e-066.3e-06
speciesPeptostreptococcaceae_noname_unclassified0.1083e-067.38e-06
speciesPeptostreptococcus_anaerobius0.1083.12e-067.63e-06
familyPrevotellaceae-0.1063.99e-069.71e-06
genusAggregatibacter0.1055.1e-061.23e-05
speciesErysipelotrichaceae_bacterium_3_1_530.1055.11e-061.23e-05
genusOxalobacter-0.1055.85e-061.39e-05
speciesOxalobacter_formigenes-0.1055.85e-061.39e-05
familySiphoviridae0.1055.86e-061.39e-05
speciesAggregatibacter_segnis0.1045.96e-061.41e-05
speciesLactobacillus_vaginalis0.1046.43e-061.51e-05
genusPrevotella-0.1037.68e-061.79e-05
speciesBifidobacterium_pseudocatenulatum0.1038.19e-061.9e-05
speciesBacteroides_caccae-0.1038.7e-062.01e-05
speciesBacteroides_fragilis-0.1038.9e-062.05e-05
familyOxalobacteraceae-0.1011.18e-052.7e-05
speciesBacteroides_dorei-0.0991.73e-053.94e-05
speciesLactobacillus_oris0.0972.66e-056.04e-05
speciesMegamonas_rupellensis0.0972.89e-056.53e-05
classDeltaproteobacteria-0.0963.14e-056.99e-05
orderDesulfovibrionales-0.0963.14e-056.99e-05
familyDesulfovibrionaceae-0.0963.14e-056.99e-05
speciesLactobacillus_crispatus0.0963.22e-057.14e-05
phylumProteobacteria-0.0953.85e-058.49e-05
speciesAlistipes_indistinctus-0.0935.66e-050.000124
speciesLactobacillus_acidophilus0.0935.8e-050.000127
genusPeptoniphilus0.0935.85e-050.000127
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0918.18e-050.000177
genusMitsuokella0.0880.0001460.000315
speciesClostridium_spiroforme0.0870.0001690.000363
speciesVeillonella_dispar0.0860.0001870.000399
genusVeillonella0.0850.0002280.000485
speciesTuricibacter_sanguinis0.0850.0002410.000508
speciesMitsuokella_unclassified0.0850.0002410.000508
speciesSubdoligranulum_unclassified0.0850.0002430.00051
genusSubdoligranulum0.0830.0003060.000639
speciesLactobacillus_mucosae0.0830.0003130.00065
speciesVeillonella_atypica0.0830.0003140.00065
speciesPrevotella_copri-0.0830.0003180.000655
speciesEubacterium_cylindroides0.0830.0003380.000694
speciesBilophila_unclassified-0.0830.0003520.000719
genusBilophila-0.0820.0004130.00084
speciesWeissella_cibaria0.0810.0004230.000857
speciesBacteroides_faecis-0.0810.0004250.000857
speciesClostridium_clostridioforme0.0790.0005970.0012
speciesCoriobacteriaceae_bacterium_phI0.0780.000760.00152
genusCoriobacteriaceae_noname0.0760.0009310.00185
genusStaphylococcus0.0760.000970.00192
familyBacteroidales_noname-0.0750.00110.00215
genusBacteroidales_noname-0.0750.00110.00215
speciesBacteroidales_bacterium_ph8-0.0750.00110.00215
speciesVeillonella_parvula0.0750.001210.00236
familyStaphylococcaceae0.0740.00130.00251
speciesHaemophilus_sputorum0.0740.00130.00251
speciesMegamonas_funiformis0.0740.001330.00256
speciesEubacterium_dolichum0.0740.001390.00267
speciesAlistipes_sp_HGB5-0.0740.001440.00275
speciesStreptococcus_phage_Sfi210.0740.001450.00276
genusFaecalibacterium0.0740.001460.00276
speciesFaecalibacterium_prausnitzii0.0740.001460.00276
genusCampylobacter0.0730.001560.00293
speciesStreptococcus_lutetiensis0.0730.001590.00298
speciesEubacterium_limosum0.0730.001650.00308
phylumVerrucomicrobia0.0730.001690.00308
classVerrucomicrobiae0.0730.001690.00308
orderVerrucomicrobiales0.0730.001690.00308
familyVerrucomicrobiaceae0.0730.001690.00308
genusAkkermansia0.0730.001690.00308
speciesAkkermansia_muciniphila0.0730.001690.00308
genusTuricibacter0.0720.001730.00314
familyCampylobacteraceae0.0720.001780.00322
orderViruses_noname0.0720.001910.00344
speciesMethanobrevibacter_smithii0.0710.002170.00389
genusActinobacillus0.070.002380.00424
speciesActinobacillus_unclassified0.070.002380.00424
speciesAlistipes_unclassified0.070.002390.00424
speciesEubacterium_ventriosum0.0680.003050.00539
speciesDorea_unclassified-0.0680.003340.00588
speciesSubdoligranulum_sp_4_3_54A2FAA0.0670.003540.00621
speciesBifidobacterium_breve0.0670.003560.00622
classEpsilonproteobacteria0.0670.003610.00624
orderCampylobacterales0.0670.003610.00624
speciesPrevotella_stercorea-0.0670.003610.00624
genusMethanobrevibacter0.0670.003630.00625
speciesOdoribacter_unclassified0.0670.003670.0063
speciesHoldemania_filiformis0.0670.0040.00684
speciesClostridium_sp_KLE_17550.0660.004080.00695
speciesParabacteroides_sp_D13-0.0660.00410.00696
genusHaemophilus-0.0660.004240.00717
speciesKlebsiella_oxytoca0.0660.004340.00731
genusWeissella0.0660.004350.00731
speciesHaemophilus_parainfluenzae-0.0660.004450.00745
orderPasteurellales-0.0640.005560.00924
familyPasteurellaceae-0.0640.005560.00924
speciesBacteroides_salyersiae-0.0640.005590.00926
speciesClostridium_hathewayi0.0640.005880.0097
phylumEuryarchaeota0.0640.005970.00982
classMethanobacteria0.0620.006920.0113
orderMethanobacteriales0.0620.006920.0113
familyMethanobacteriaceae0.0620.006920.0113
speciesHoldemania_unclassified0.0620.007050.0114
speciesVeillonella_unclassified0.0620.007450.012
speciesOdoribacter_laneus0.0620.007740.0125
speciesPrevotella_buccae0.060.009240.0148
speciesBacteroides_massiliensis-0.060.009360.015
speciesClostridium_asparagiforme0.0590.01030.0164
genusSutterellaceae_unclassified-0.0590.01080.0172
speciesKlebsiella_pneumoniae-0.0580.01210.0192
speciesLactobacillus_reuteri0.0570.01370.0216
genusMegasphaera0.0570.0140.022
speciesBilophila_wadsworthia-0.0570.01420.0223
speciesTuricibacter_unclassified0.0550.01690.0264
speciesBacteroides_sp_3_1_19-0.0540.01950.0303
speciesClostridium_symbiosum0.0540.01950.0303
speciesRuminococcus_lactaris0.0540.01990.0308
speciesBacteroides_plebeius-0.0540.020.0308
speciesClostridium_perfringens0.0540.02030.0312
speciesParabacteroides_unclassified-0.0540.02070.0317
speciesLactobacillus_amylovorus0.0530.02170.0331
genusButyricicoccus0.0520.02350.0356
speciesButyricicoccus_pullicaecorum0.0520.02350.0356
speciesRoseburia_unclassified0.0520.02350.0356
speciesHaemophilus_paraphrohaemolyticus0.0520.0240.0362
speciesLachnospiraceae_bacterium_3_1_46FAA0.0520.02410.0362
speciesBacteroides_pectinophilus-0.0520.02580.0387
speciesCollinsella_tanakaei-0.0510.02750.0411
speciesBacteroides_sp_2_1_22-0.050.02930.0436
speciesLactococcus_phage_jm20.0490.03420.0508
speciesWeissella_confusa0.0490.0360.0533
speciesMitsuokella_multacida0.0480.03960.0584
familyMyoviridae0.0470.04030.0593
speciesBacteroides_oleiciplenus-0.0470.04310.0632
speciesEnterobacter_cloacae-0.0460.04870.0712
speciesFusobacterium_ulcerans-0.0450.0530.0772
genusDesulfovibrio-0.0440.05450.0792
genusEnterobacter-0.0440.05720.0828
speciesKlebsiella_sp_MS_92_30.0430.06130.0885
genusC2likevirus0.0430.06240.0898
genusPyramidobacter-0.0430.06370.0911
speciesPyramidobacter_piscolens-0.0430.06370.0911
speciesFusobacterium_varium-0.0430.06410.0914
speciesEubacterium_sp_3_1_310.0430.06450.0917
speciesEubacterium_biforme0.0420.06920.0981
speciesDesulfovibrio_desulfuricans-0.0420.070.0989
speciesC2likevirus_unclassified0.0420.07160.101
speciesCoprobacillus_sp_D60.0420.07230.102
speciesLachnospiraceae_bacterium_7_1_58FAA-0.040.08070.113
genusSlackia0.0390.08810.123
speciesBacteroides_clarus-0.0390.08910.124
genusSuccinatimonas-0.0380.09990.138
speciesSuccinatimonas_hippei-0.0380.09990.138
speciesParaprevotella_xylaniphila-0.0380.10.138
speciesLactococcus_garvieae0.0380.1020.14
speciesRoseburia_inulinivorans-0.0380.1020.14
speciesRuminococcus_champanellensis-0.0380.1030.141
speciesLeuconostoc_lactis0.0370.1060.144
phylumSynergistetes-0.0370.1070.144
classSynergistia-0.0370.1070.144
orderSynergistales-0.0370.1070.144
familySynergistaceae-0.0370.1070.144
speciesButyrivibrio_unclassified0.0370.110.148
genusAcidaminococcus0.0370.1130.152
speciesLactococcus_phage_bIL670.0360.1160.155
speciesEubacterium_eligens-0.0360.1170.156
speciesLactobacillus_ruminis-0.0360.1230.164
genusKlebsiella-0.0350.1270.168
speciesOscillibacter_sp_KLE_1745-0.0350.1310.173
speciesButyrivibrio_crossotus-0.0340.1440.19
familySuccinivibrionaceae-0.0330.150.197
speciesCollinsella_intestinalis0.0330.1510.198
speciesAnaerotruncus_colihominis0.0320.1620.212
speciesRuminococcus_callidus-0.0320.1690.22
speciesClostridiales_bacterium_1_7_47FAA0.0320.170.221
speciesPorphyromonas_uenonis0.0320.1720.223
speciesMethanobrevibacter_unclassified0.0320.1730.224
speciesCollinsella_unclassified-0.0310.1810.233
genusPorphyromonas0.0310.1850.238
genusFusobacterium0.0310.1870.24
speciesLactococcus_phage_phi70.030.1940.248
speciesEscherichia_unclassified0.030.2010.256
speciesClostridium_citroniae0.0290.2150.274
familyFusobacteriaceae0.0280.2210.279
genusPseudoflavonifractor0.0280.2220.279
speciesBacteroides_salanitronis-0.0280.2220.279
speciesPseudoflavonifractor_capillosus0.0280.2220.279
speciesBacteroides_sp_1_1_6-0.0280.2220.279
genusSutterella-0.0280.2270.284
speciesLactobacillus_sanfranciscensis0.0280.2320.29
speciesEubacterium_siraeum0.0280.2340.291
speciesBifidobacterium_angulatum-0.0270.2440.303
speciesPrevotella_bivia0.0270.2490.307
familyPodoviridae0.0270.250.307
speciesAcidaminococcus_unclassified0.0270.250.307
speciesRoseburia_intestinalis0.0270.250.307
phylumFusobacteria0.0260.2610.318
classFusobacteriia0.0260.2610.318
orderFusobacteriales0.0260.2610.318
speciesKlebsiella_unclassified0.0260.2650.322
speciesAcidaminococcus_intestini0.0250.2750.334
genusClostridiaceae_noname0.0250.2830.342
speciesClostridiaceae_bacterium_JC1180.0250.2830.342
speciesClostridium_sp_ATCC_BAA_442-0.0240.2910.35
speciesStreptococcus_pasteurianus0.0240.2990.359
speciesKlebsiella_phage_KP36-0.0240.30.359
speciesSutterella_wadsworthensis-0.0240.3090.369
genusCitrobacter0.0220.3350.399
genusBarnesiella-0.0220.340.403
speciesBarnesiella_intestinihominis-0.0220.340.403
speciesClostridium_nexile0.0220.3450.408
speciesEscherichia_coli0.0220.3520.415
speciesCitrobacter_unclassified0.0210.360.424
genusEscherichia0.0210.3660.43
genusRuminococcaceae_noname0.0210.370.432
speciesRuminococcaceae_bacterium_D160.0210.370.432
speciesLachnospiraceae_bacterium_8_1_57FAA0.020.3840.448
orderAeromonadales-0.020.3950.458
orderEnterobacteriales0.020.3960.458
familyEnterobacteriaceae0.020.3960.458
familyViruses_noname0.0190.40.46
genusViruses_noname0.0190.40.46
genusProteus0.0190.4010.461
genusPantoea-0.0190.4080.466
speciesPantoea_unclassified-0.0190.4080.466
speciesProteus_mirabilis0.0190.420.479
genusMyoviridae_noname0.0170.4550.517
speciesBacteroides_eggerthii-0.0170.4560.517
speciesDesulfovibrio_piger-0.0170.4660.527
speciesCitrobacter_freundii0.0170.4690.53
familyClostridiales_noname-0.0170.4710.531
genusFlavonifractor-0.0160.4980.558
speciesFlavonifractor_plautii-0.0160.4980.558
speciesBacteroides_sp_4_3_47FAA-0.0150.5150.576
genusTunalikevirus-0.0150.5250.586
speciesBacteroides_coprocola-0.0140.5470.609
speciesDialister_succinatiphilus0.0140.5510.611
genusMorganella0.0140.5540.611
speciesMorganella_morganii0.0140.5540.611
speciesRoseburia_hominis-0.0140.5540.611
genusPhascolarctobacterium-0.0130.5660.621
speciesPhascolarctobacterium_succinatutens-0.0130.5660.621
speciesClostridium_sp_L2_50-0.0130.5680.622
genusLambdalikevirus0.0110.6380.697
speciesAnaerostipes_unclassified0.010.6590.718
speciesBacteroides_barnesiae-0.0090.6910.752
speciesPorphyromonas_asaccharolytica0.0080.7230.784
genusParaprevotella-0.0080.7260.786
genusAnaerotruncus-0.0080.730.788
speciesBacteroides_fluxus-0.0080.7310.788
speciesParabacteroides_sp_20_30.0080.7330.788
speciesCoprococcus_eutactus-0.0080.7350.788
speciesBacteroides_coprophilus-0.0080.7450.797
speciesLactococcus_phage_936_sensu_lato-0.0070.7560.807
speciesParaprevotella_unclassified-0.0070.760.81
speciesEnterobacter_aerogenes-0.0070.7630.811
speciesFusobacterium_mortiferum-0.0070.7730.82
speciesAnaerotruncus_unclassified0.0060.7790.824
speciesEnterobacteria_phage_HK544-0.0060.7830.827
speciesSutterella_parvirubra-0.0060.7940.837
genusRoseburia0.0060.8010.842
speciesStreptococcus_infantarius0.0040.8660.908
genusButyrivibrio-0.0040.8720.913
genusClostridiales_noname0.0040.8740.913
classGammaproteobacteria0.0030.8850.916
genusAcidaminococcaceae_unclassified-0.0030.8870.916
genusCoprobacter-0.0030.8870.916
speciesCoprobacter_fastidiosus-0.0030.8870.916
speciesLachnospiraceae_bacterium_2_1_46FAA0.0030.8880.916
speciesParaprevotella_clara-0.0030.8890.916
speciesSlackia_piriformis0.0030.9030.929
speciesParabacteroides_johnsonii-0.0030.9120.936
speciesHoldemania_sp_AP20.0020.9230.945
speciesAcidaminococcus_fermentans-0.0020.9340.954
genusMethanosphaera0.0020.940.956
speciesMethanosphaera_stadtmanae0.0020.940.956
familyAcidaminococcaceae0.0010.9480.96
speciesAlistipes_sp_AP11-0.0020.9480.96
speciesMegasphaera_unclassified-0.0010.9570.967
genusCatenibacterium-0.0010.9680.974
speciesCatenibacterium_mitsuokai-0.0010.9680.974
speciesCoprococcus_sp_ART55_10.0010.9710.975
speciesCoprobacillus_sp_29_10.00.9850.987
speciesMegasphaera_elsdenii0.00.9880.988
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.06409001848040.02993609148873.29056183588e-0723787.98818
Type II diabetesSweden53920.1230650942160.08816902810240.02543340499639453.20014
Colorectal cancerAustria64350.1311433611040.1899303251360.0759113851751406413.7502
Type II diabetesChina1831850.0384087170810.03925166243410.254757375721488349.1854
Type II diabetesDenmark752770.03534642879140.03142155081710.486677583932019366.1914
ObesityDenmark1691230.03041866772250.03257837195530.5426098678062040667.1007
Ulcerative colitisSpain78660.06032843322330.0582797233580.5897450232422137370.5054
Rheumatoid arthritisChina127980.04858767791390.05024967651080.7496377660182369879.0276
Crohns diseaseSpain17660.0821455221670.0582797233580.9146335715542904496.5719
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382