MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-03-19 10:10:30 PST
Job id & description: 1777, cntA
Query type: protein
Count queries & homologs: 4, 4
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
MH0372_GL00514931646162Lack 5'-endK00470;K00517COG4638ProteobacteriaEscherichia100.0100.0100.0
469595.CSAG_016491898703CompleteK00470;K00517COG4638ProteobacteriaCitrobacter100.0100.0100.0
MH0204_GL02054901891014CompleteK00470;K00517COG4638ProteobacteriaKlebsiella100.0100.0100.0
V1.UC39-4_GL00126091885841CompleteK00470COG4638ProteobacteriaProvidencia100.0100.0100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classGammaproteobacteria0.8190.00.0
orderEnterobacteriales0.8590.00.0
familyEnterobacteriaceae0.8590.00.0
genusEscherichia0.8030.00.0
speciesEscherichia_coli0.7890.00.0
phylumProteobacteria0.6541.44e-2281.13e-226
genusKlebsiella0.6257.77e-2035.24e-201
speciesKlebsiella_pneumoniae0.6159.52e-1955.62e-193
speciesEscherichia_unclassified0.4883.1e-1121.63e-110
genusPantoea0.4014.68e-732.01e-71
speciesPantoea_unclassified0.4014.68e-732.01e-71
genusEnterobacter0.3942.02e-707.95e-69
speciesEnterobacter_cloacae0.3852.77e-671.01e-65
speciesRuminococcus_gnavus0.3565.38e-571.81e-55
speciesSubdoligranulum_unclassified-0.3512.78e-558.75e-54
genusSubdoligranulum-0.3475.13e-541.51e-52
familyFusobacteriaceae0.3437.93e-532.2e-51
genusFusobacterium0.3391.61e-514.22e-50
phylumFusobacteria0.3382.45e-515.51e-50
classFusobacteriia0.3382.45e-515.51e-50
orderFusobacteriales0.3382.45e-515.51e-50
genusCitrobacter0.3344.95e-501.06e-48
speciesCitrobacter_unclassified0.3276.04e-481.24e-46
speciesCitrobacter_freundii0.3238.58e-471.69e-45
speciesEubacterium_siraeum-0.3136.57e-441.24e-42
speciesLachnospiraceae_bacterium_7_1_58FAA-0.3131.16e-432.11e-42
speciesClostridium_nexile0.3121.35e-432.36e-42
speciesAnaerotruncus_unclassified-0.2997.75e-401.31e-38
genusButyrivibrio-0.2852.11e-363.43e-35
speciesClostridium_bolteae0.2821.98e-353.12e-34
genusCoprobacillus0.271.08e-321.64e-31
genusPseudoflavonifractor-0.2635.42e-317.75e-30
speciesPseudoflavonifractor_capillosus-0.2635.42e-317.75e-30
speciesClostridium_hathewayi0.2593.88e-305.39e-29
genusCoprococcus-0.2545.58e-297.53e-28
familyRuminococcaceae-0.2547.07e-299.27e-28
speciesCoprobacillus_unclassified0.254.56e-285.81e-27
genusWeissella0.254.68e-285.81e-27
speciesEubacterium_ramulus-0.2497.63e-289.23e-27
speciesBifidobacterium_adolescentis-0.2481.21e-271.43e-26
classClostridia-0.2449.71e-271.09e-25
orderClostridiales-0.2449.71e-271.09e-25
speciesKlebsiella_unclassified0.2441.04e-261.14e-25
speciesC2likevirus_unclassified-0.2381.64e-251.76e-24
speciesMegamonas_unclassified0.2381.75e-251.84e-24
genusMegamonas0.2372.23e-252.25e-24
speciesClostridium_ramosum0.2372.24e-252.25e-24
speciesKlebsiella_oxytoca0.2372.36e-252.32e-24
genusBarnesiella-0.2372.76e-252.61e-24
speciesBarnesiella_intestinihominis-0.2372.76e-252.61e-24
speciesClostridium_leptum-0.2365.52e-255.06e-24
genusMegasphaera0.2355.57e-255.06e-24
genusC2likevirus-0.2341.21e-241.08e-23
speciesWeissella_confusa0.237.93e-246.93e-23
speciesVeillonella_parvula0.2291.1e-239.44e-23
speciesEubacterium_rectale-0.2257.74e-236.52e-22
speciesEubacterium_hallii-0.2249.09e-237.53e-22
speciesFusobacterium_ulcerans0.2241e-228.14e-22
genusDorea-0.2241.23e-229.84e-22
speciesClostridium_perfringens0.2231.49e-221.17e-21
speciesLactobacillus_salivarius0.2231.73e-221.34e-21
speciesButyrivibrio_unclassified-0.2231.96e-221.49e-21
speciesMitsuokella_unclassified-0.2222.1e-221.57e-21
speciesClostridium_symbiosum0.2222.18e-221.61e-21
speciesFusobacterium_mortiferum0.2222.51e-221.82e-21
genusEubacterium-0.2222.83e-222.02e-21
familyEubacteriaceae-0.2222.88e-222.03e-21
familyBacteroidales_noname-0.226.24e-224.21e-21
genusBacteroidales_noname-0.226.24e-224.21e-21
speciesBacteroidales_bacterium_ph8-0.226.24e-224.21e-21
speciesDorea_longicatena-0.2181.78e-211.18e-20
speciesCoprococcus_comes-0.2171.86e-211.22e-20
speciesLactococcus_garvieae0.2155.5e-213.56e-20
speciesBacteroides_fragilis0.2147.83e-214.99e-20
genusMitsuokella-0.2131.26e-207.93e-20
speciesSutterella_wadsworthensis-0.2121.9e-201.18e-19
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2113.09e-201.89e-19
genusVeillonella0.214.51e-202.73e-19
genusRuminococcaceae_noname-0.2095.52e-203.26e-19
speciesRuminococcaceae_bacterium_D16-0.2095.52e-203.26e-19
speciesAnaerostipes_hadrus-0.2095.66e-203.3e-19
genusEnterococcus0.2095.95e-203.42e-19
genusSutterella-0.2089.38e-205.33e-19
familyEnterococcaceae0.2089.84e-205.53e-19
speciesFusobacterium_varium0.2062.29e-191.27e-18
speciesStreptococcus_thermophilus-0.2045.75e-193.16e-18
genusCollinsella-0.2011.98e-181.07e-17
genusCoprobacter-0.22.57e-181.36e-17
speciesCoprobacter_fastidiosus-0.22.57e-181.36e-17
speciesCollinsella_aerofaciens-0.22.6e-181.36e-17
speciesClostridiales_bacterium_1_7_47FAA0.1994.13e-182.14e-17
speciesStreptococcus_infantarius0.1984.55e-182.33e-17
familyLeuconostocaceae0.1977.76e-183.94e-17
speciesCoprococcus_catus-0.1978.16e-184.1e-17
genusAnaerotruncus-0.1961.27e-176.31e-17
familyClostridiaceae0.1961.37e-176.74e-17
speciesEnterobacter_aerogenes0.1951.55e-177.54e-17
phylumFirmicutes-0.1942.34e-171.12e-16
speciesBacteroides_uniformis-0.1942.35e-171.12e-16
speciesMegasphaera_micronuciformis0.1942.55e-171.2e-16
genusClostridium0.1942.58e-171.21e-16
speciesBacteroides_stercoris0.1933.57e-171.65e-16
speciesFusobacterium_nucleatum0.1934.3e-171.97e-16
speciesClostridium_citroniae0.1926.57e-172.98e-16
speciesWeissella_cibaria0.1891.64e-167.37e-16
speciesLactobacillus_mucosae0.1873e-161.34e-15
speciesRoseburia_hominis-0.1873.48e-161.54e-15
speciesBifidobacterium_pseudocatenulatum0.1856.94e-163.03e-15
speciesStreptococcus_anginosus0.1841.21e-155.13e-15
genusPrevotella0.1841.24e-155.13e-15
phylumVerrucomicrobia-0.1841.26e-155.13e-15
classVerrucomicrobiae-0.1841.26e-155.13e-15
orderVerrucomicrobiales-0.1841.26e-155.13e-15
familyVerrucomicrobiaceae-0.1841.26e-155.13e-15
genusAkkermansia-0.1841.26e-155.13e-15
speciesAkkermansia_muciniphila-0.1841.26e-155.13e-15
familyRikenellaceae-0.1831.7e-156.8e-15
genusAlistipes-0.1831.7e-156.8e-15
genusFlavonifractor0.1813.55e-151.39e-14
speciesFlavonifractor_plautii0.1813.55e-151.39e-14
speciesEggerthella_unclassified0.1813.56e-151.39e-14
speciesEnterococcus_faecalis0.184.47e-151.73e-14
speciesVeillonella_unclassified0.1761.52e-145.83e-14
speciesAlistipes_senegalensis-0.1752.26e-148.5e-14
classBacilli0.1752.28e-148.5e-14
orderLactobacillales0.1752.33e-148.5e-14
phylumSynergistetes0.1752.34e-148.5e-14
classSynergistia0.1752.34e-148.5e-14
orderSynergistales0.1752.34e-148.5e-14
familySynergistaceae0.1752.34e-148.5e-14
genusPyramidobacter0.1743.28e-141.17e-13
speciesPyramidobacter_piscolens0.1743.28e-141.17e-13
speciesMegamonas_rupellensis0.1734.37e-141.55e-13
genusOdoribacter-0.1726.87e-142.42e-13
speciesDorea_formicigenerans-0.1718.51e-142.98e-13
genusEggerthella0.1718.9e-143.09e-13
speciesBacteroides_plebeius0.1719.88e-143.4e-13
speciesVeillonella_dispar0.1711e-133.42e-13
familySiphoviridae-0.1691.63e-135.53e-13
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1673.25e-131.1e-12
speciesRuminococcus_sp_5_1_39BFAA-0.1673.36e-131.12e-12
speciesOscillibacter_unclassified-0.1673.67e-131.22e-12
familyOscillospiraceae-0.1641.01e-123.31e-12
genusOscillibacter-0.1641.01e-123.31e-12
speciesOdoribacter_splanchnicus-0.1631.26e-124.1e-12
speciesMegamonas_hypermegale0.1621.64e-125.3e-12
speciesCoprococcus_sp_ART55_1-0.1621.87e-126e-12
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1612.8e-128.93e-12
speciesBacteroides_intestinalis0.163.16e-121e-11
speciesHaemophilus_parainfluenzae0.1594.47e-121.41e-11
genusHaemophilus0.1577.91e-122.47e-11
speciesPrevotella_buccae0.1579.7e-123.01e-11
speciesPrevotella_copri0.1561.21e-113.73e-11
speciesPrevotella_stercorea0.1551.49e-114.57e-11
orderPasteurellales0.1551.6e-114.84e-11
familyPasteurellaceae0.1551.6e-114.84e-11
speciesMegasphaera_unclassified0.1532.65e-117.97e-11
phylumEuryarchaeota-0.1523.7e-111.11e-10
speciesMethanobrevibacter_smithii-0.1524.25e-111.26e-10
genusMethanobrevibacter-0.1514.99e-111.47e-10
speciesButyrivibrio_crossotus-0.1515.62e-111.65e-10
speciesAlistipes_shahii-0.157.28e-112.12e-10
orderCoriobacteriales-0.1462.15e-106.19e-10
familyCoriobacteriaceae-0.1462.15e-106.19e-10
classMethanobacteria-0.1462.36e-106.67e-10
orderMethanobacteriales-0.1462.36e-106.67e-10
familyMethanobacteriaceae-0.1462.36e-106.67e-10
speciesAlistipes_onderdonkii-0.1452.69e-107.56e-10
speciesKlebsiella_sp_MS_92_30.1444.31e-101.2e-09
familyPorphyromonadaceae-0.1435.73e-101.59e-09
speciesMegamonas_funiformis0.1435.75e-101.59e-09
genusCampylobacter0.1426.58e-101.81e-09
speciesLachnospiraceae_bacterium_6_1_63FAA0.1427.31e-101.99e-09
speciesBifidobacterium_dentium0.1418.87e-102.4e-09
speciesRuminococcus_lactaris-0.1418.9e-102.4e-09
speciesBlautia_hydrogenotrophica-0.1418.98e-102.41e-09
familyCampylobacteraceae0.1411.01e-092.69e-09
genusClostridiales_noname0.141.18e-093.13e-09
speciesStreptococcus_mitis_oralis_pneumoniae0.141.19e-093.14e-09
speciesAlistipes_putredinis-0.1391.42e-093.72e-09
classEpsilonproteobacteria0.1391.53e-093.97e-09
orderCampylobacterales0.1391.53e-093.97e-09
speciesBacteroides_nordii0.1391.58e-094.08e-09
familyLactobacillaceae0.1391.79e-094.59e-09
speciesBacteroides_thetaiotaomicron0.1381.85e-094.72e-09
speciesAnaerostipes_unclassified0.1381.87e-094.75e-09
speciesErysipelotrichaceae_bacterium_21_3-0.1372.4e-096.06e-09
genusLactobacillus0.1373.02e-097.58e-09
familyBacillales_noname0.1354.27e-091.06e-08
genusGemella0.1354.27e-091.06e-08
genusAnaerostipes-0.1345.69e-091.41e-08
genusRuminococcus-0.1346.6e-091.62e-08
speciesStreptococcus_salivarius0.1329.87e-092.41e-08
speciesLachnospiraceae_bacterium_2_1_58FAA0.1311.39e-083.38e-08
speciesEnterococcus_faecium0.131.51e-083.65e-08
genusSolobacterium0.131.77e-084.24e-08
speciesSolobacterium_moorei0.131.77e-084.24e-08
speciesVeillonella_atypica0.131.83e-084.36e-08
speciesStreptococcus_australis0.1273.94e-089.35e-08
speciesParaprevotella_xylaniphila-0.1264.65e-081.1e-07
speciesLachnospiraceae_bacterium_2_1_46FAA0.1264.92e-081.16e-07
speciesStreptococcus_pasteurianus0.1247.74e-081.81e-07
speciesOdoribacter_unclassified-0.1239.63e-082.24e-07
speciesLeuconostoc_lactis0.1221.29e-072.98e-07
speciesBacteroides_salyersiae0.1211.5e-073.45e-07
speciesRuminococcus_obeum-0.1192.25e-075.16e-07
speciesStreptococcus_lutetiensis0.1192.46e-075.61e-07
orderBacillales0.1183.13e-077.1e-07
speciesRoseburia_unclassified-0.1183.16e-077.14e-07
speciesParaprevotella_unclassified-0.1183.24e-077.28e-07
familyMyoviridae0.1183.33e-077.45e-07
speciesBifidobacterium_catenulatum-0.1183.35e-077.46e-07
speciesBacteroides_sp_3_1_190.1173.82e-078.46e-07
familyStreptococcaceae0.1174e-078.82e-07
genusParaprevotella-0.1174.33e-079.51e-07
speciesAggregatibacter_segnis0.1164.78e-071.04e-06
familyPeptostreptococcaceae0.1155.56e-071.21e-06
genusAggregatibacter0.1155.93e-071.28e-06
orderCaudovirales-0.1156.22e-071.34e-06
speciesCoprococcus_eutactus-0.1147.87e-071.69e-06
speciesClostridium_bartlettii0.1148.1e-071.73e-06
familyVeillonellaceae0.1148.26e-071.76e-06
speciesEnterobacteria_phage_HK5440.1139.31e-071.97e-06
genusMorganella0.1139.42e-071.98e-06
speciesMorganella_morganii0.1139.42e-071.98e-06
speciesLactobacillus_sanfranciscensis0.1139.73e-072.03e-06
speciesOlsenella_unclassified-0.1121.14e-062.37e-06
familyPropionibacteriaceae-0.1121.27e-062.63e-06
familySutterellaceae-0.1121.33e-062.74e-06
genusPeptostreptococcaceae_noname0.111.99e-064.08e-06
genusPeptostreptococcus0.1092.08e-064.25e-06
speciesParaprevotella_clara-0.1092.1e-064.27e-06
speciesBacteroides_coprocola0.1092.17e-064.4e-06
familyLachnospiraceae-0.1092.35e-064.74e-06
speciesCampylobacter_concisus0.1082.96e-065.95e-06
genusStreptococcus0.1073.39e-066.78e-06
speciesLactobacillus_fermentum0.1073.51e-066.99e-06
speciesBacteroides_xylanisolvens0.1064.05e-068.03e-06
speciesBifidobacterium_animalis-0.1046.3e-061.24e-05
speciesAlistipes_sp_HGB5-0.1046.52e-061.28e-05
speciesLachnospiraceae_bacterium_5_1_63FAA-0.1046.53e-061.28e-05
genusAcidaminococcaceae_unclassified-0.1011.1e-052.15e-05
speciesLactobacillus_amylovorus0.1011.22e-052.37e-05
speciesDialister_invisus-0.11.52e-052.94e-05
orderBurkholderiales-0.11.55e-052.99e-05
speciesBacteroides_oleiciplenus0.0991.7e-053.26e-05
speciesRuminococcus_champanellensis-0.0991.72e-053.29e-05
genusAdlercreutzia-0.0991.76e-053.34e-05
speciesAdlercreutzia_equolifaciens-0.0991.76e-053.34e-05
speciesAlistipes_sp_AP11-0.0991.81e-053.42e-05
speciesClostridium_asparagiforme0.0991.87e-053.52e-05
genusDialister-0.0982.2e-054.12e-05
genusBlautia0.0972.61e-054.87e-05
speciesPropionibacterium_freudenreichii-0.0972.72e-055.05e-05
phylumViruses_noname-0.0972.83e-055.22e-05
classViruses_noname-0.0972.83e-055.22e-05
speciesAcidaminococcus_intestini0.0972.88e-055.29e-05
speciesMegasphaera_elsdenii0.0963.33e-056.09e-05
speciesClostridium_sp_ATCC_BAA_4420.0963.42e-056.23e-05
classBetaproteobacteria-0.0953.59e-056.52e-05
speciesLactobacillus_crispatus0.0953.85e-056.96e-05
speciesBacteroides_finegoldii0.0944.35e-057.84e-05
speciesClostridium_clostridioforme0.0944.48e-058.04e-05
speciesHaemophilus_paraphrohaemolyticus0.0935.19e-059.28e-05
speciesProteus_mirabilis0.0935.6e-059.97e-05
phylumActinobacteria-0.0926.55e-050.000116
classActinobacteria-0.0926.55e-050.000116
genusFaecalibacterium-0.0926.85e-050.00012
speciesFaecalibacterium_prausnitzii-0.0926.85e-050.00012
familyClostridiales_noname0.0926.95e-050.000121
speciesAlistipes_indistinctus-0.0927.12e-050.000124
genusOlsenella-0.0917.57e-050.000131
speciesMethanobrevibacter_unclassified-0.099.88e-050.000171
speciesClostridium_sp_L2_50-0.0890.0001090.000188
genusLambdalikevirus0.0890.000120.000206
genusSiphoviridae_noname-0.0880.0001440.000246
genusProteus0.0880.0001450.000247
speciesPrevotella_bivia0.0860.0001840.000312
genusCatenibacterium-0.0840.0002710.000457
speciesCatenibacterium_mitsuokai-0.0840.0002710.000457
genusActinobacillus0.0840.0002930.00049
speciesActinobacillus_unclassified0.0840.0002930.00049
speciesEubacterium_ventriosum-0.0830.0003140.000524
speciesRoseburia_intestinalis-0.0830.0003210.000533
speciesBacteroides_massiliensis0.0830.0003340.000553
genusBifidobacterium-0.0820.0003750.000619
speciesLactobacillus_plantarum0.0820.0003840.000632
speciesAlistipes_finegoldii-0.0820.0004030.00066
genusBilophila0.0810.0004750.000775
speciesBilophila_unclassified0.0810.0004760.000775
familyBacteroidaceae0.0810.0004810.000778
genusBacteroides0.0810.0004810.000778
genusPropionibacterium-0.080.0005530.000891
orderBifidobacteriales-0.0790.000590.000944
familyBifidobacteriaceae-0.0790.000590.000944
speciesLactococcus_phage_P680-0.0790.0005970.000952
speciesParabacteroides_goldsteinii0.0790.0006230.00099
speciesBifidobacterium_angulatum-0.0790.0006270.000993
familyAcidaminococcaceae-0.0790.0006610.00104
speciesBacteroides_pectinophilus-0.0780.0006870.00108
speciesStreptococcus_sanguinis0.0780.0007090.00111
speciesLachnospiraceae_bacterium_1_1_57FAA0.0770.0008760.00137
speciesBacteroides_salanitronis-0.0760.0009760.00152
genusPhascolarctobacterium-0.0760.0009920.00154
speciesPhascolarctobacterium_succinatutens-0.0760.0009920.00154
speciesLachnospiraceae_bacterium_1_4_56FAA0.0750.001190.00184
speciesLactobacillus_acidophilus-0.0750.00120.00184
speciesEubacterium_biforme-0.0750.001220.00187
genusMyoviridae_noname0.0750.001260.00192
speciesEubacterium_eligens-0.0740.001290.00196
speciesPeptostreptococcus_stomatis0.0740.001310.00199
speciesPorphyromonas_uenonis0.0740.001440.00218
speciesStreptococcus_gordonii0.0740.001450.00219
speciesAnaerotruncus_colihominis0.0720.001710.00257
classDeltaproteobacteria0.0720.001940.00289
orderDesulfovibrionales0.0720.001940.00289
familyDesulfovibrionaceae0.0720.001940.00289
speciesBifidobacterium_longum-0.0710.002050.00304
speciesGemella_morbillorum0.070.002590.00383
speciesCoprobacillus_sp_29_10.0690.002820.00416
speciesLachnospiraceae_bacterium_5_1_57FAA0.0690.002890.00425
speciesOscillibacter_sp_KLE_1745-0.0690.002950.00432
speciesEubacterium_limosum0.0680.003160.00462
speciesRothia_mucilaginosa0.0680.00320.00466
speciesBacteroides_sp_1_1_6-0.0670.003650.0053
speciesParabacteroides_merdae-0.0670.00370.00536
speciesLactobacillus_oris0.0670.003830.00553
genusTunalikevirus0.0650.005040.00725
speciesBilophila_wadsworthia0.0650.005060.00726
speciesOscillibacter_sp_KLE_1728-0.0650.005080.00727
speciesRuminococcus_bromii-0.0640.005450.00777
speciesLactococcus_phage_936_sensu_lato-0.0640.005660.00805
familyActinomycetaceae0.0630.00610.00865
speciesHaemophilus_sputorum0.0630.006390.00903
speciesEggerthella_lenta0.0630.006780.00955
speciesCoprobacillus_sp_D60.0630.00680.00955
familyPrevotellaceae0.0620.007090.00993
speciesLactococcus_phage_jm2-0.0620.00750.0105
speciesAlistipes_unclassified-0.0610.007840.0109
speciesAcidaminococcus_fermentans0.0610.008110.0113
genusLeuconostoc0.0610.008510.0118
speciesBacteroides_barnesiae-0.0610.008830.0122
speciesBifidobacterium_breve0.060.009060.0125
speciesLactobacillus_vaginalis0.060.009170.0126
speciesHoldemania_unclassified-0.060.009780.0134
genusPorphyromonas0.060.009970.0136
speciesStreptococcus_vestibularis0.0590.01080.0147
familyClostridiales_Family_XI_Incertae_Sedis0.0590.01090.0147
genusActinomyces0.0590.01090.0147
speciesCollinsella_tanakaei0.0590.01110.015
speciesBacteroides_eggerthii0.0580.0120.0161
speciesKlebsiella_phage_KP360.0580.01260.0169
classNegativicutes0.0560.01490.0199
orderSelenomonadales0.0560.01490.0199
familyMicrococcaceae0.0550.01660.0221
genusRothia0.0550.01740.0231
orderViruses_noname-0.0540.01980.0262
speciesDorea_unclassified-0.0530.0220.029
genusParabacteroides-0.0530.02230.0293
speciesAcidaminococcus_unclassified-0.0520.02330.0305
speciesDesulfovibrio_desulfuricans-0.0520.02340.0306
familyOxalobacteraceae-0.0520.02440.0318
speciesLactococcus_phage_phi7-0.0520.02480.0322
genusOxalobacter-0.0520.02540.0328
speciesOxalobacter_formigenes-0.0520.02540.0328
genusGordonibacter-0.0520.02570.0331
speciesGordonibacter_pamelaeae-0.0520.02570.0331
speciesBlautia_producta0.0510.02670.0342
speciesLactobacillus_gasseri0.050.02970.038
speciesParabacteroides_sp_D13-0.0480.03780.0482
speciesEubacterium_cylindroides-0.0470.04070.0518
speciesCoriobacteriaceae_bacterium_phI-0.0470.04220.0535
speciesLactococcus_lactis-0.0470.04270.054
speciesLactobacillus_reuteri0.0460.04880.0616
speciesParabacteroides_johnsonii0.0450.05190.0653
orderAeromonadales0.0450.05350.0672
speciesHoldemania_filiformis-0.0440.05740.0719
genusPeptoniphilus0.0440.05990.0748
speciesStreptococcus_mutans0.0430.06010.0748
genusCoriobacteriaceae_noname-0.0430.06390.0794
genusSutterellaceae_unclassified-0.0430.0660.0818
genusRoseburia-0.0420.06670.0824
speciesPorphyromonas_asaccharolytica0.0410.07510.0926
genusBurkholderiales_noname0.0410.07830.096
speciesBurkholderiales_bacterium_1_1_470.0410.07830.096
speciesLactobacillus_ruminis-0.040.08730.107
speciesDesulfovibrio_piger-0.0390.08940.109
familyBurkholderiales_noname0.0390.09160.111
speciesHoldemania_sp_AP20.0390.09410.114
speciesEubacterium_dolichum0.0390.09590.116
speciesBacteroides_dorei-0.0390.09590.116
speciesLactobacillus_casei_paracasei-0.0380.09880.119
speciesTuricibacter_unclassified-0.0380.1050.126
speciesBacteroides_faecis0.0370.1080.129
speciesClostridium_sp_KLE_1755-0.0370.1120.134
genusAcidaminococcus0.0360.1160.138
speciesBacteroides_sp_2_1_22-0.0360.1160.138
genusTuricibacter-0.0360.1170.139
genusSlackia0.0350.130.154
genusParasutterella0.0340.1420.167
speciesParasutterella_excrementihominis0.0340.1420.167
orderPseudomonadales0.0330.150.176
speciesLactobacillus_delbrueckii-0.0330.1580.185
orderActinomycetales0.0320.1630.19
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0320.1660.193
speciesLactococcus_phage_bIL67-0.0310.1750.203
speciesRuminococcus_callidus0.0310.1780.206
speciesCollinsella_intestinalis0.030.1970.228
familyViruses_noname0.0270.2380.274
genusViruses_noname0.0270.2380.274
genusDesulfovibrio-0.0270.2410.277
genusParvimonas0.0260.2660.305
speciesMitsuokella_multacida-0.0260.2670.305
speciesBacteroides_caccae0.0260.2680.306
speciesParvimonas_unclassified0.0260.2690.306
speciesRuminococcus_torques-0.0250.2720.309
speciesSutterella_parvirubra0.0230.3170.359
speciesBacteroides_coprophilus0.0220.3390.383
classErysipelotrichia0.0210.3570.4
orderErysipelotrichales0.0210.3570.4
familyErysipelotrichaceae0.0210.3570.4
speciesBacteroides_cellulosilyticus-0.0210.3640.407
speciesParabacteroides_sp_20_3-0.0210.3690.412
speciesPeptostreptococcaceae_noname_unclassified-0.0210.370.412
genusHoldemania-0.0210.3740.415
speciesTuricibacter_sanguinis-0.020.3850.427
speciesParabacteroides_distasonis0.020.3960.438
speciesBacteroides_clarus0.0190.3990.44
speciesParabacteroides_unclassified0.0190.4150.457
classBacteroidia0.0180.4310.472
orderBacteroidales0.0180.4310.472
phylumBacteroidetes0.0180.4320.472
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0170.4510.492
speciesBacteroides_sp_4_3_47FAA0.0170.4530.493
genusLactococcus0.0170.4620.501
speciesCollinsella_unclassified-0.0170.4650.503
familyPodoviridae0.0160.480.518
speciesClostridium_spiroforme-0.0160.4850.523
speciesEubacterium_sp_3_1_31-0.0150.5120.55
familySuccinivibrionaceae-0.0150.5150.552
speciesErysipelotrichaceae_bacterium_3_1_530.0150.5180.554
speciesErysipelotrichaceae_bacterium_6_1_45-0.0150.5210.556
speciesPeptostreptococcus_anaerobius0.0150.5240.558
speciesOdoribacter_laneus-0.0150.5250.558
genusLachnospiraceae_noname-0.0140.5530.587
speciesEggerthella_sp_1_3_56FAA-0.0140.5550.587
genusMethanosphaera-0.0130.5640.594
speciesMethanosphaera_stadtmanae-0.0130.5640.594
speciesBacteroides_ovatus0.0130.5650.594
speciesRuminococcus_sp_JC3040.0130.5770.605
genusErysipelotrichaceae_noname-0.0110.620.649
speciesBifidobacterium_bifidum-0.0110.6350.663
genusSuccinatimonas-0.0110.6450.671
speciesSuccinatimonas_hippei-0.0110.6450.671
genusClostridiaceae_noname0.010.6610.684
speciesClostridiaceae_bacterium_JC1180.010.6610.684
genusStaphylococcus-0.0080.7330.757
speciesBacteroides_fluxus-0.0080.740.763
speciesBacteroides_vulgatus-0.0070.7470.768
speciesLactobacillus_rhamnosus-0.0070.7550.775
speciesRoseburia_inulinivorans-0.0060.7860.805
speciesSlackia_piriformis0.0060.8010.818
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0050.8170.833
genusButyricicoccus0.0050.8450.858
speciesButyricicoccus_pullicaecorum0.0050.8450.858
genusButyricimonas0.0030.8860.895
speciesButyricimonas_synergistica0.0030.8860.895
familyStaphylococcaceae-0.0020.9220.93
speciesStreptococcus_parasanguinis-0.0020.9380.944
speciesDialister_succinatiphilus-0.0010.9550.959
speciesSubdoligranulum_sp_4_3_54A2FAA0.0010.9640.966
speciesStreptococcus_phage_Sfi210.00.9950.995
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.006523217327890.001808840702152.59528656028e-098082.64857
Liver cirrhosisChina1201140.02875179062750.00512585996630.000315376413195622520.911
Crohns diseaseSpain17660.02844362238760.002880409083450.000978163616318414013.7656
Colorectal cancerAustria64350.02507945984250.01233706682740.0935997204468482116.3114
Type II diabetesSweden53920.002909200889310.006053618386440.4135179437751333245.1473
Type II diabetesChina1831850.02424357156340.01990080061860.4234003978851936363.9909
ObesityDenmark1691230.002577034144490.00653518098370.5620626705122083068.4949
Rheumatoid arthritisChina127980.01550052576080.01204663350290.6458201445562106570.2471
Ulcerative colitisSpain78660.0006603987103160.002880409083450.6595662356042295975.7373
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382