MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-03-19 10:11:17 PST
Job id & description: 1778, cntB
Query type: protein
Count queries & homologs: 7, 7
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
521000.PROVRETT_085062467360CompleteK00540COG1018ProteobacteriaProvidencia100.0100.0100.0
MH0204_GL02054882509539CompleteK00540COG1018ProteobacteriaKlebsiella100.0100.0100.0
NLM027_GL00628002517103CompleteK00540COG1018ProteobacteriaEnterobacter100.0100.0100.0
469595.CSAG_016502519732CompleteK00540COG1018ProteobacteriaCitrobacter100.0100.0100.0
656420.ERJG_002512519854CompleteK00540COG1018ProteobacteriaEscherichia100.0100.0100.0
MH0095_GL00166262507888CompleteK00540COG1018ProteobacteriaEscherichia100.0100.0100.0
MH0025_GL00019774364714Lack 3'-endK00540COG1018ProteobacteriaEscherichia100.0100.0100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classGammaproteobacteria0.8160.00.0
orderEnterobacteriales0.8530.00.0
familyEnterobacteriaceae0.8530.00.0
genusEscherichia0.7990.00.0
speciesEscherichia_coli0.7850.00.0
phylumProteobacteria0.6474.78e-2223.76e-220
genusKlebsiella0.6165.76e-1963.88e-194
speciesKlebsiella_pneumoniae0.6061.07e-1876.31e-186
speciesEscherichia_unclassified0.4842.41e-1101.26e-108
genusPantoea0.4043.37e-741.45e-72
speciesPantoea_unclassified0.4043.37e-741.45e-72
genusEnterobacter0.3879.27e-683.65e-66
speciesEnterobacter_cloacae0.3795.55e-652.02e-63
speciesRuminococcus_gnavus0.3535.98e-562.02e-54
familyFusobacteriaceae0.3476.28e-541.98e-52
speciesSubdoligranulum_unclassified-0.3437.98e-532.35e-51
genusFusobacterium0.3431.07e-522.97e-51
phylumFusobacteria0.3421.36e-523.21e-51
classFusobacteriia0.3421.36e-523.21e-51
orderFusobacteriales0.3421.36e-523.21e-51
genusSubdoligranulum-0.3391.48e-513.33e-50
genusCitrobacter0.3322.73e-495.86e-48
speciesCitrobacter_unclassified0.3231.17e-462.4e-45
speciesClostridium_nexile0.3223.02e-465.94e-45
speciesEubacterium_siraeum-0.3214.76e-468.99e-45
speciesCitrobacter_freundii0.3182.53e-454.59e-44
speciesLachnospiraceae_bacterium_7_1_58FAA-0.3051.15e-412.01e-40
speciesAnaerotruncus_unclassified-0.2924.02e-386.78e-37
genusButyrivibrio-0.2883.94e-376.41e-36
speciesClostridium_bolteae0.2812.8e-354.41e-34
genusCoprobacillus0.2741.41e-332.15e-32
genusPseudoflavonifractor-0.2635.6e-318.01e-30
speciesPseudoflavonifractor_capillosus-0.2635.6e-318.01e-30
speciesClostridium_hathewayi0.2571.06e-291.47e-28
genusCoprococcus-0.2546.24e-298.42e-28
speciesCoprobacillus_unclassified0.2531e-281.31e-27
familyRuminococcaceae-0.255.92e-287.55e-27
genusWeissella0.2497.26e-289.02e-27
speciesEubacterium_ramulus-0.2498.62e-281.04e-26
speciesClostridium_ramosum0.2454.86e-275.73e-26
speciesBifidobacterium_adolescentis-0.2431.85e-262.13e-25
speciesKlebsiella_oxytoca0.2422.44e-262.74e-25
classClostridia-0.2413.88e-264.16e-25
orderClostridiales-0.2413.88e-264.16e-25
speciesClostridium_leptum-0.2391.11e-251.16e-24
speciesKlebsiella_unclassified0.2391.18e-251.21e-24
genusBarnesiella-0.2391.28e-251.26e-24
speciesBarnesiella_intestinihominis-0.2391.28e-251.26e-24
speciesC2likevirus_unclassified-0.2365.51e-255.31e-24
speciesClostridium_symbiosum0.2357.28e-256.87e-24
speciesVeillonella_parvula0.2358.16e-257.55e-24
speciesMegamonas_unclassified0.2331.58e-241.43e-23
genusMegamonas0.2331.95e-241.74e-23
genusC2likevirus-0.2314.42e-243.86e-23
genusMegasphaera0.235.7e-244.89e-23
speciesWeissella_confusa0.2272.32e-231.96e-22
speciesButyrivibrio_unclassified-0.2272.84e-232.35e-22
genusDorea-0.2264.46e-233.63e-22
speciesEubacterium_hallii-0.2248.74e-236.99e-22
speciesFusobacterium_ulcerans0.2249.44e-237.43e-22
speciesClostridium_perfringens0.2241.21e-229.36e-22
speciesEubacterium_rectale-0.2231.95e-221.48e-21
speciesCoprococcus_comes-0.2222.32e-221.74e-21
genusEubacterium-0.2222.5e-221.84e-21
familyEubacteriaceae-0.2222.58e-221.87e-21
speciesFusobacterium_mortiferum0.2213.54e-222.53e-21
speciesLactobacillus_salivarius0.2213.83e-222.7e-21
speciesMitsuokella_unclassified-0.2214.11e-222.85e-21
familyBacteroidales_noname-0.225.59e-223.72e-21
genusBacteroidales_noname-0.225.59e-223.72e-21
speciesBacteroidales_bacterium_ph8-0.225.59e-223.72e-21
speciesBacteroides_fragilis0.2198.21e-225.38e-21
speciesDorea_longicatena-0.2172.55e-211.65e-20
genusEnterococcus0.2163.46e-212.21e-20
genusCoprobacter-0.2155.23e-213.25e-20
speciesCoprobacter_fastidiosus-0.2155.23e-213.25e-20
familyEnterococcaceae0.2155.52e-213.38e-20
speciesLactococcus_garvieae0.2149.91e-216e-20
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2131.26e-207.53e-20
genusVeillonella0.2112.47e-201.46e-19
genusMitsuokella-0.2112.62e-201.53e-19
speciesSutterella_wadsworthensis-0.2113.39e-201.95e-19
speciesAnaerostipes_hadrus-0.2113.52e-202e-19
speciesFusobacterium_varium0.2071.67e-199.38e-19
speciesFusobacterium_nucleatum0.2071.69e-199.38e-19
genusSutterella-0.2062.27e-191.25e-18
speciesCoprococcus_catus-0.2053.35e-191.82e-18
genusRuminococcaceae_noname-0.2029.58e-195.08e-18
speciesRuminococcaceae_bacterium_D16-0.2029.58e-195.08e-18
speciesMegasphaera_micronuciformis0.22.95e-181.55e-17
speciesStreptococcus_infantarius0.1993.7e-181.92e-17
familyLeuconostocaceae0.1977.51e-183.85e-17
speciesStreptococcus_anginosus0.1978.53e-184.33e-17
speciesStreptococcus_thermophilus-0.1961.14e-175.72e-17
genusCollinsella-0.1951.85e-179.19e-17
speciesCollinsella_aerofaciens-0.1933.18e-171.56e-16
speciesClostridium_citroniae0.1933.64e-171.77e-16
speciesClostridiales_bacterium_1_7_47FAA0.1933.92e-171.89e-16
speciesLactobacillus_mucosae0.1934.51e-172.15e-16
speciesEnterobacter_aerogenes0.1925.28e-172.49e-16
genusAnaerotruncus-0.1925.78e-172.7e-16
speciesWeissella_cibaria0.1919e-174.16e-16
familyClostridiaceae0.191.05e-164.81e-16
phylumFirmicutes-0.191.08e-164.9e-16
genusClostridium0.1891.68e-167.55e-16
speciesEggerthella_unclassified0.1873.04e-161.35e-15
familyRikenellaceae-0.1873.46e-161.51e-15
genusAlistipes-0.1873.46e-161.51e-15
speciesRoseburia_hominis-0.1874.1e-161.78e-15
speciesBifidobacterium_pseudocatenulatum0.1874.26e-161.83e-15
speciesBacteroides_stercoris0.1864.72e-162.01e-15
speciesAlistipes_senegalensis-0.1866e-162.53e-15
phylumVerrucomicrobia-0.1857.93e-163.17e-15
classVerrucomicrobiae-0.1857.93e-163.17e-15
orderVerrucomicrobiales-0.1857.93e-163.17e-15
familyVerrucomicrobiaceae-0.1857.93e-163.17e-15
genusAkkermansia-0.1857.93e-163.17e-15
speciesAkkermansia_muciniphila-0.1857.93e-163.17e-15
genusFlavonifractor0.1831.7e-156.69e-15
speciesFlavonifractor_plautii0.1831.7e-156.69e-15
speciesBacteroides_uniformis-0.1821.95e-157.61e-15
genusOdoribacter-0.1812.64e-151.02e-14
genusPrevotella0.1796.08e-152.33e-14
speciesEnterococcus_faecalis0.1796.46e-152.46e-14
genusEggerthella0.1788.79e-153.32e-14
speciesVeillonella_unclassified0.1771.12e-144.2e-14
classBacilli0.1771.24e-144.61e-14
orderLactobacillales0.1761.9e-147.01e-14
speciesVeillonella_dispar0.1752.17e-147.94e-14
phylumSynergistetes0.1752.39e-148.48e-14
classSynergistia0.1752.39e-148.48e-14
orderSynergistales0.1752.39e-148.48e-14
familySynergistaceae0.1752.39e-148.48e-14
speciesOscillibacter_unclassified-0.1735.76e-142.02e-13
genusPyramidobacter0.1735.82e-142.02e-13
speciesPyramidobacter_piscolens0.1735.82e-142.02e-13
speciesHaemophilus_parainfluenzae0.171.32e-134.55e-13
speciesMegamonas_rupellensis0.171.54e-135.27e-13
speciesDorea_formicigenerans-0.1691.94e-136.59e-13
speciesOdoribacter_splanchnicus-0.1692.02e-136.81e-13
familyOscillospiraceae-0.1692.07e-136.88e-13
genusOscillibacter-0.1692.07e-136.88e-13
genusHaemophilus0.1682.32e-137.66e-13
speciesBacteroides_plebeius0.1683.05e-131e-12
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1683.09e-131.01e-12
speciesRuminococcus_sp_5_1_39BFAA-0.1673.53e-131.14e-12
speciesPrevotella_buccae0.1664.7e-131.51e-12
orderPasteurellales0.1665.1e-131.62e-12
familyPasteurellaceae0.1665.1e-131.62e-12
familySiphoviridae-0.1658.15e-132.56e-12
speciesLachnospiraceae_bacterium_9_1_43BFAA0.163.32e-121.04e-11
speciesPrevotella_stercorea0.1595.01e-121.56e-11
speciesMegamonas_hypermegale0.1586.15e-121.9e-11
speciesButyrivibrio_crossotus-0.1551.39e-114.26e-11
speciesAlistipes_shahii-0.1551.75e-115.33e-11
speciesBacteroides_intestinalis0.1551.82e-115.51e-11
speciesMethanobrevibacter_smithii-0.1551.85e-115.56e-11
speciesCoprococcus_sp_ART55_1-0.1533.14e-119.38e-11
genusCampylobacter0.1533.16e-119.38e-11
speciesStreptococcus_mitis_oralis_pneumoniae0.1523.4e-111e-10
speciesBifidobacterium_dentium0.1523.84e-111.13e-10
genusMethanobrevibacter-0.1523.87e-111.13e-10
speciesPrevotella_copri0.1524e-111.16e-10
phylumEuryarchaeota-0.1524.32e-111.24e-10
speciesStreptococcus_australis0.1515.13e-111.47e-10
classEpsilonproteobacteria0.157.51e-112.12e-10
orderCampylobacterales0.157.51e-112.12e-10
familyBacillales_noname0.157.64e-112.13e-10
genusGemella0.157.64e-112.13e-10
familyCampylobacteraceae0.157.95e-112.21e-10
familyPorphyromonadaceae-0.158.06e-112.22e-10
speciesEnterococcus_faecium0.1481.33e-103.65e-10
classMethanobacteria-0.1471.86e-105.02e-10
orderMethanobacteriales-0.1471.86e-105.02e-10
familyMethanobacteriaceae-0.1471.86e-105.02e-10
speciesMegasphaera_unclassified0.1453.23e-108.66e-10
speciesAlistipes_onderdonkii-0.1453.25e-108.67e-10
speciesAlistipes_putredinis-0.1444.41e-101.17e-09
speciesKlebsiella_sp_MS_92_30.1444.46e-101.18e-09
orderCoriobacteriales-0.1426.73e-101.76e-09
familyCoriobacteriaceae-0.1426.73e-101.76e-09
speciesLachnospiraceae_bacterium_6_1_63FAA0.1419.16e-102.38e-09
genusSolobacterium0.1391.39e-093.57e-09
speciesSolobacterium_moorei0.1391.39e-093.57e-09
familyLactobacillaceae0.1391.5e-093.83e-09
speciesRuminococcus_lactaris-0.1391.53e-093.88e-09
genusLactobacillus0.1382.05e-095.17e-09
speciesParaprevotella_xylaniphila-0.1382.13e-095.35e-09
speciesAnaerostipes_unclassified0.1382.22e-095.54e-09
speciesBacteroides_nordii0.1372.47e-096.14e-09
speciesStreptococcus_salivarius0.1363.49e-098.62e-09
genusAnaerostipes-0.1363.62e-098.9e-09
speciesMegamonas_funiformis0.1363.91e-099.56e-09
speciesOdoribacter_unclassified-0.1354.24e-091.03e-08
genusRuminococcus-0.1345.98e-091.45e-08
speciesBlautia_hydrogenotrophica-0.1346.05e-091.46e-08
speciesErysipelotrichaceae_bacterium_21_3-0.1337.34e-091.76e-08
speciesLachnospiraceae_bacterium_2_1_58FAA0.1329.52e-092.27e-08
genusClostridiales_noname0.1311.21e-082.87e-08
speciesVeillonella_atypica0.1311.45e-083.42e-08
speciesLachnospiraceae_bacterium_2_1_46FAA0.131.54e-083.62e-08
speciesStreptococcus_pasteurianus0.131.83e-084.28e-08
speciesBacteroides_thetaiotaomicron0.1283.14e-087.3e-08
orderBacillales0.1273.49e-088.07e-08
speciesLactobacillus_sanfranciscensis0.1255.43e-081.25e-07
speciesBacteroides_sp_3_1_190.1238.91e-082.04e-07
familyStreptococcaceae0.1239.81e-082.24e-07
speciesStreptococcus_lutetiensis0.1231e-072.27e-07
speciesLeuconostoc_lactis0.1221.23e-072.78e-07
speciesAggregatibacter_segnis0.1211.53e-073.44e-07
speciesRuminococcus_obeum-0.1192.39e-075.35e-07
genusParaprevotella-0.1192.6e-075.79e-07
speciesOlsenella_unclassified-0.1183e-076.65e-07
speciesParaprevotella_unclassified-0.1183.05e-076.73e-07
genusAggregatibacter0.1183.23e-077.09e-07
familyPeptostreptococcaceae0.1173.66e-078e-07
speciesRoseburia_unclassified-0.1164.57e-079.94e-07
familySutterellaceae-0.1164.88e-071.06e-06
genusPeptostreptococcus0.1165.03e-071.08e-06
familyMyoviridae0.1155.94e-071.27e-06
genusMorganella0.1156.11e-071.3e-06
speciesMorganella_morganii0.1156.11e-071.3e-06
familyPropionibacteriaceae-0.1156.22e-071.32e-06
genusStreptococcus0.1148.48e-071.79e-06
familyVeillonellaceae0.1131.02e-062.14e-06
speciesBifidobacterium_catenulatum-0.1121.17e-062.44e-06
genusAcidaminococcaceae_unclassified-0.1121.2e-062.5e-06
speciesBacteroides_salyersiae0.1121.33e-062.75e-06
speciesCampylobacter_concisus0.1111.38e-062.84e-06
speciesEnterobacteria_phage_HK5440.1111.43e-062.93e-06
speciesParaprevotella_clara-0.112.01e-064.11e-06
speciesLactobacillus_fermentum0.1092.11e-064.29e-06
genusPeptostreptococcaceae_noname0.1092.51e-065.08e-06
familyLachnospiraceae-0.1092.52e-065.08e-06
orderCaudovirales-0.1092.57e-065.16e-06
speciesClostridium_bartlettii0.1082.9e-065.8e-06
speciesCoprococcus_eutactus-0.1073.51e-066.99e-06
orderBurkholderiales-0.1064.42e-068.77e-06
speciesBacteroides_coprocola0.1046.75e-061.33e-05
speciesBifidobacterium_animalis-0.1037.4e-061.46e-05
speciesAlistipes_sp_HGB5-0.1038.36e-061.64e-05
speciesBacteroides_xylanisolvens0.1021e-051.95e-05
genusAdlercreutzia-0.1021.04e-052.01e-05
speciesAdlercreutzia_equolifaciens-0.1021.04e-052.01e-05
classBetaproteobacteria-0.1011.1e-052.12e-05
speciesMegasphaera_elsdenii0.1011.27e-052.44e-05
speciesBacteroides_oleiciplenus0.11.35e-052.58e-05
speciesLachnospiraceae_bacterium_5_1_63FAA-0.11.37e-052.61e-05
genusOlsenella-0.0991.73e-053.28e-05
speciesClostridium_asparagiforme0.0991.84e-053.47e-05
speciesAlistipes_sp_AP11-0.0982.09e-053.93e-05
speciesClostridium_sp_L2_50-0.0972.59e-054.85e-05
speciesAcidaminococcus_intestini0.0972.68e-055e-05
speciesAlistipes_indistinctus-0.0972.89e-055.37e-05
speciesClostridium_clostridioforme0.0963.2e-055.92e-05
speciesPropionibacterium_freudenreichii-0.0944.34e-058e-05
phylumViruses_noname-0.0944.43e-058.1e-05
classViruses_noname-0.0944.43e-058.1e-05
speciesLactobacillus_amylovorus0.0944.64e-058.44e-05
genusBlautia0.0944.65e-058.44e-05
speciesHaemophilus_paraphrohaemolyticus0.0944.93e-058.92e-05
speciesProteus_mirabilis0.0945.12e-059.22e-05
speciesDialister_invisus-0.0935.15e-059.24e-05
speciesBacteroides_finegoldii0.0935.42e-059.69e-05
speciesMethanobrevibacter_unclassified-0.0935.57e-059.92e-05
speciesRuminococcus_champanellensis-0.0926.29e-050.000112
genusFaecalibacterium-0.0926.41e-050.000113
speciesFaecalibacterium_prausnitzii-0.0926.41e-050.000113
genusProteus0.0927.21e-050.000127
speciesStreptococcus_sanguinis0.0918.72e-050.000152
genusDialister-0.099.45e-050.000165
speciesEubacterium_ventriosum-0.090.00010.000174
genusActinobacillus0.090.0001020.000176
speciesActinobacillus_unclassified0.090.0001020.000176
speciesBacteroides_pectinophilus-0.0890.0001210.000208
phylumActinobacteria-0.0890.0001240.000211
classActinobacteria-0.0890.0001240.000211
speciesLactobacillus_crispatus0.0880.0001290.000219
genusSiphoviridae_noname-0.0870.0001690.000286
familyClostridiales_noname0.0860.0001940.000327
speciesPeptostreptococcus_stomatis0.0860.0002070.000348
genusLambdalikevirus0.0850.000240.000402
speciesStreptococcus_gordonii0.0840.0002630.000439
speciesLactobacillus_plantarum0.0840.0002910.000484
speciesClostridium_sp_ATCC_BAA_4420.0830.0003060.000507
speciesPorphyromonas_uenonis0.0820.0003890.00064
speciesLachnospiraceae_bacterium_5_1_57FAA0.0820.0003890.00064
genusBifidobacterium-0.0820.0004140.000678
speciesLachnospiraceae_bacterium_1_4_56FAA0.080.0005530.000903
speciesParabacteroides_goldsteinii0.0790.0005870.000955
speciesEggerthella_lenta0.0790.0006090.000988
orderBifidobacteriales-0.0790.0006190.000995
familyBifidobacteriaceae-0.0790.0006190.000995
speciesEubacterium_limosum0.0790.000620.000995
speciesAlistipes_finegoldii-0.0790.000650.00104
genusCatenibacterium-0.0790.0006750.00107
speciesCatenibacterium_mitsuokai-0.0790.0006750.00107
familyAcidaminococcaceae-0.0780.0007280.00115
speciesRothia_mucilaginosa0.0770.0007990.00126
familyBacteroidaceae0.0770.000830.0013
genusBacteroides0.0770.000830.0013
speciesRoseburia_intestinalis-0.0770.0008340.0013
speciesBifidobacterium_angulatum-0.0770.0009020.00141
speciesGemella_morbillorum0.0760.001030.0016
speciesLactobacillus_acidophilus-0.0760.001050.00162
speciesLactococcus_phage_936_sensu_lato-0.0760.001060.00164
speciesLactococcus_phage_P680-0.0760.001080.00166
genusMyoviridae_noname0.0750.00110.00169
speciesLachnospiraceae_bacterium_1_1_57FAA0.0750.001190.00182
speciesOscillibacter_sp_KLE_1728-0.0740.001350.00206
genusPropionibacterium-0.0740.001440.00219
speciesOscillibacter_sp_KLE_1745-0.0730.001480.00224
speciesPrevotella_bivia0.0730.001610.00243
speciesCoprobacillus_sp_29_10.0730.001690.00254
speciesAnaerotruncus_colihominis0.0720.001790.00268
familyActinomycetaceae0.0720.001820.00272
speciesEubacterium_eligens-0.0720.001840.00274
speciesAcidaminococcus_fermentans0.0720.001960.00291
familyClostridiales_Family_XI_Incertae_Sedis0.0710.002210.00327
speciesBifidobacterium_longum-0.070.002390.00353
speciesEubacterium_biforme-0.070.002450.0036
genusTunalikevirus0.0690.002660.0039
speciesBacteroides_sp_1_1_6-0.0680.003080.0045
speciesBacteroides_massiliensis0.0680.003180.00463
familyMicrococcaceae0.0680.003450.00501
genusRothia0.0670.003640.00527
genusActinomyces0.0670.003930.00567
speciesHaemophilus_sputorum0.0660.004040.00581
genusPhascolarctobacterium-0.0660.004070.00582
speciesPhascolarctobacterium_succinatutens-0.0660.004070.00582
speciesDesulfovibrio_desulfuricans-0.0660.004170.00595
speciesParabacteroides_merdae-0.0660.004190.00596
genusBilophila0.0650.004720.00669
speciesBilophila_unclassified0.0650.004790.00677
speciesBifidobacterium_breve0.0650.004820.00679
speciesLactobacillus_oris0.0650.005220.00733
genusPorphyromonas0.0640.005290.00741
speciesBacteroides_salanitronis-0.0640.005640.00788
speciesKlebsiella_phage_KP360.0630.006840.00952
speciesBlautia_producta0.0620.007040.00977
speciesLactobacillus_vaginalis0.0620.00720.00997
speciesEubacterium_cylindroides-0.0620.007460.0103
speciesCoprobacillus_sp_D60.0620.007630.0105
familyPrevotellaceae0.0610.008830.0121
genusParabacteroides-0.060.009440.0129
speciesStreptococcus_vestibularis0.060.009860.0135
speciesRuminococcus_bromii-0.0590.01070.0146
classDeltaproteobacteria0.0590.01090.0147
orderDesulfovibrionales0.0590.01090.0147
familyDesulfovibrionaceae0.0590.01090.0147
genusLeuconostoc0.0590.01090.0147
speciesAcidaminococcus_unclassified-0.0590.01120.015
orderViruses_noname-0.0580.01150.0154
speciesParabacteroides_sp_D13-0.0580.01210.0161
speciesBilophila_wadsworthia0.0570.01330.0177
classNegativicutes0.0570.01350.0178
orderSelenomonadales0.0570.01350.0178
speciesBacteroides_barnesiae-0.0570.01390.0183
speciesHoldemania_unclassified-0.0570.01420.0187
speciesAlistipes_unclassified-0.0560.01480.0194
speciesLactobacillus_gasseri0.0540.01850.0242
speciesCollinsella_tanakaei0.0540.01890.0246
speciesBacteroides_eggerthii0.0520.02380.0309
familyOxalobacteraceae-0.0520.02520.0327
genusGordonibacter-0.0520.02560.0329
speciesGordonibacter_pamelaeae-0.0520.02560.0329
speciesHoldemania_filiformis-0.0520.02560.0329
speciesPorphyromonas_asaccharolytica0.0520.02590.0332
genusOxalobacter-0.0510.02680.0342
speciesOxalobacter_formigenes-0.0510.02680.0342
speciesDorea_unclassified-0.0510.02710.0345
speciesLactococcus_phage_jm2-0.0490.0330.0419
genusPeptoniphilus0.0490.03310.0419
speciesLactococcus_lactis-0.0480.03880.049
genusSutterellaceae_unclassified-0.0480.03990.0502
speciesCoriobacteriaceae_bacterium_phI-0.0460.04850.0609
speciesLactobacillus_ruminis-0.0450.04920.0616
genusBurkholderiales_noname0.0450.04980.062
speciesBurkholderiales_bacterium_1_1_470.0450.04980.062
orderAeromonadales0.0450.050.0621
orderActinomycetales0.0450.05410.067
genusRoseburia-0.0450.05430.0671
familyBurkholderiales_noname0.0440.05850.0721
speciesBacteroides_dorei-0.0430.06160.0757
speciesLactococcus_phage_phi7-0.0430.06240.0765
speciesLactobacillus_casei_paracasei-0.0430.06610.0808
genusSlackia0.0420.06840.0834
genusCoriobacteriaceae_noname-0.0420.06890.0838
speciesLactobacillus_reuteri0.0420.07280.0883
speciesDesulfovibrio_piger-0.0410.07380.0893
speciesBacteroides_sp_2_1_22-0.0410.0790.0954
speciesEubacterium_dolichum0.040.08130.0979
genusTuricibacter-0.0390.09150.11
genusParvimonas0.0390.09340.112
speciesParvimonas_unclassified0.0390.09480.113
speciesTuricibacter_unclassified-0.0380.1020.122
genusParasutterella0.0380.1040.123
speciesParasutterella_excrementihominis0.0380.1040.123
genusAcidaminococcus0.0370.1080.127
speciesStreptococcus_mutans0.0370.1080.127
speciesRuminococcus_callidus0.0370.1110.131
speciesHoldemania_sp_AP20.0370.1130.132
speciesParabacteroides_johnsonii0.0370.1130.132
genusDesulfovibrio-0.0350.130.152
orderPseudomonadales0.0350.1350.157
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0340.1430.166
speciesBacteroides_faecis0.0330.1560.181
speciesLactococcus_phage_bIL67-0.0330.1590.184
speciesLactobacillus_delbrueckii-0.0320.1710.197
genusHoldemania-0.0290.2050.236
speciesCollinsella_intestinalis0.0290.2160.248
speciesBacteroides_coprophilus0.0290.2170.249
speciesEggerthella_sp_1_3_56FAA-0.0280.2250.257
speciesErysipelotrichaceae_bacterium_3_1_530.0280.230.262
speciesSutterella_parvirubra0.0270.2450.279
speciesBacteroides_caccae0.0270.2490.283
speciesRuminococcus_torques-0.0260.2540.288
speciesClostridium_spiroforme-0.0250.2870.324
familyPodoviridae0.0240.290.327
speciesBacteroides_cellulosilyticus-0.0240.2930.329
speciesTuricibacter_sanguinis-0.0240.30.336
speciesParabacteroides_sp_20_3-0.0240.3050.341
speciesClostridium_sp_KLE_1755-0.0230.3170.354
classErysipelotrichia0.0220.3420.379
orderErysipelotrichales0.0220.3420.379
familyErysipelotrichaceae0.0220.3420.379
speciesCollinsella_unclassified-0.0210.3720.411
speciesEubacterium_sp_3_1_31-0.0190.4090.451
speciesMitsuokella_multacida-0.0190.4150.456
speciesBacteroides_ovatus0.0190.4150.456
genusLachnospiraceae_noname-0.0190.4170.457
speciesBacteroides_clarus0.0190.4220.461
familyViruses_noname0.0180.4270.464
genusViruses_noname0.0180.4270.464
genusMethanosphaera-0.0170.4520.489
speciesMethanosphaera_stadtmanae-0.0170.4520.489
speciesParabacteroides_unclassified0.0170.4610.498
speciesRuminococcus_sp_JC3040.0170.4670.503
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0170.4690.504
speciesPeptostreptococcaceae_noname_unclassified-0.0160.4870.522
familySuccinivibrionaceae-0.0160.50.535
genusLactococcus0.0150.5110.546
genusClostridiaceae_noname0.0150.5230.556
speciesClostridiaceae_bacterium_JC1180.0150.5230.556
speciesBifidobacterium_bifidum-0.0140.5450.578
genusStaphylococcus-0.0130.5650.598
speciesOdoribacter_laneus-0.0130.5690.601
speciesBacteroides_vulgatus-0.0130.5820.613
speciesErysipelotrichaceae_bacterium_2_2_44A0.0130.5870.617
classBacteroidia0.0120.5910.618
orderBacteroidales0.0120.5910.618
phylumBacteroidetes0.0120.5920.618
genusButyricicoccus0.0120.60.624
speciesButyricicoccus_pullicaecorum0.0120.60.624
genusSuccinatimonas-0.0110.6260.648
speciesSuccinatimonas_hippei-0.0110.6260.648
speciesSlackia_piriformis0.0110.6490.67
speciesRoseburia_inulinivorans-0.010.6670.687
speciesPeptostreptococcus_anaerobius0.010.6690.688
genusErysipelotrichaceae_noname-0.0090.6910.709
speciesParabacteroides_distasonis0.0090.7010.718
speciesBacteroides_fluxus0.0090.7030.718
familyStaphylococcaceae-0.0070.7630.778
speciesStreptococcus_parasanguinis0.0050.8230.837
speciesErysipelotrichaceae_bacterium_6_1_45-0.0040.8680.881
speciesLactobacillus_rhamnosus-0.0030.8820.893
speciesDialister_succinatiphilus-0.0020.9160.926
genusButyricimonas0.0010.9620.968
speciesButyricimonas_synergistica0.0010.9620.968
speciesSubdoligranulum_sp_4_3_54A2FAA0.00.9930.997
speciesStreptococcus_phage_Sfi210.00.9980.998
speciesBacteroides_sp_4_3_47FAA0.00.9980.998
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.006687160212820.00185006941931.4316972224e-088922.92392
Liver cirrhosisChina1201140.03062251825060.006188243127229.02975753055e-05505316.974
Crohns diseaseSpain17660.02808226895610.003199070741970.00024860153988226768.89776
Colorectal cancerAustria64350.02756841145920.01162451014240.015640316618810663.60671
Ulcerative colitisSpain78660.0006683238996840.003199070741970.3063497937451398446.1305
Type II diabetesChina1831850.02560157778280.01994374078260.4879863099192073868.535
Rheumatoid arthritisChina127980.01568608312310.01228115342120.5540071788751884962.8572
Type II diabetesSweden53920.00303585966030.006836741257810.688359992942110671.4731
ObesityDenmark1691230.00265312178460.006309525555710.8643611675512772491.1644
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382