MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-03-19 10:12:47 PST
Job id & description: 1779, cutc
Query type: protein
Count queries & homologs: 24, 24
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
V1.UC39-4_GL010956578100CompleteK00656COG1882ProteobacteriaProvidencia100.0100.0100.0
V1.CD3-0-PT_GL005727078340CompleteK00656COG1882ProteobacteriaProteus100.0100.0100.0
362663.ECP_460078976CompleteK00656COG1882ProteobacteriaEscherichia100.0100.0100.0
MH0204_GL021606581950CompleteK00656COG1882ProteobacteriaKlebsiella100.0100.0100.0
T2D-66A_GL003459882127CompleteK00656COG1882ProteobacteriaKlebsiella100.0100.0100.0
MH0260_GL007921681961CompleteK00656COG1882ProteobacteriaKlebsiella100.0100.0100.0
T2D-157A_GL0032870197389Lack 5'-endK00656COG1882Firmicutesunknown100.0100.0100.0
457421.CBFG_00666202755CompleteK00656COG1882Firmicutesunknown100.0100.0100.0
T2D-61A_GL0010874205091CompleteK00656COG1882Firmicutesunknown100.0100.0100.0
DLF014_GL0012089211400CompleteK00656COG1882unknownunknown100.0100.0100.0
V1.CD12-3_GL0027587212087CompleteK00656COG1882Firmicutesunknown100.0100.0100.0
O2.UC48-1_GL0151453213698CompleteK00656COG1882Firmicutesunknown100.0100.0100.0
V1.UC26-4_GL0067367215393CompleteK00656COG1882FirmicutesAnaerococcus100.0100.0100.0
V1.CD5-0-PN_GL0066324213736CompleteK00656COG1882unknownunknown100.0100.0100.0
V1.FI37_GL0019825219417CompleteK00656COG1882Actinobacteriaunknown100.0100.0100.0
MH0108_GL0040778213303CompleteK00656COG1882Proteobacteriaunknown100.0100.0100.0
V1.FI17_GL0215840217789CompleteK00656COG1882Firmicutesunknown100.0100.0100.0
SZEY-81A_GL0051451217899CompleteK00656COG1882Firmicutesunknown100.0100.0100.0
NOM023_GL0016214218717CompleteK00656COG1882Firmicutesunknown100.0100.0100.0
MH0372_GL0060017217569CompleteK00656COG1882Firmicutesunknown100.0100.0100.0
NLM023_GL0038265221104CompleteK00656COG1882Firmicutesunknown100.0100.0100.0
BGI-33A_GL0026831249756CompleteK00656COG1882unknownunknown100.0100.0100.0
MH0398_GL0150886249406CompleteK00656COG1882Proteobacteriaunknown100.0100.0100.0
T2D-68A_GL0003011364647Lack 3'-endK00656COG1882ActinobacteriaOlsenella100.0100.0100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesClostridium_bolteae0.4615.36e-992.53e-96
orderEnterobacteriales0.434.23e-856.66e-83
familyEnterobacteriaceae0.434.23e-856.66e-83
speciesClostridium_hathewayi0.4214.63e-815.46e-79
speciesClostridiales_bacterium_1_7_47FAA0.4051.29e-741.22e-72
familyClostridiaceae0.45.78e-734.55e-71
genusClostridium0.3992.13e-721.44e-70
genusEscherichia0.3921.29e-697.61e-68
speciesEscherichia_coli0.3891.42e-686.99e-67
classGammaproteobacteria0.3891.48e-686.99e-67
speciesRuminococcus_gnavus0.3882.77e-681.19e-66
speciesClostridium_symbiosum0.3641.52e-595.98e-58
genusCoprobacillus0.3611.36e-584.94e-57
speciesClostridium_citroniae0.3521.08e-553.64e-54
speciesCoprobacillus_unclassified0.3391.53e-514.81e-50
phylumProteobacteria0.3377.32e-512.16e-49
speciesClostridium_clostridioforme0.3316.67e-491.85e-47
speciesClostridium_ramosum0.331.33e-483.49e-47
genusClostridiales_noname0.3261.27e-473.15e-46
genusKlebsiella0.326.99e-461.65e-44
genusFlavonifractor0.3184.51e-459.68e-44
speciesFlavonifractor_plautii0.3184.51e-459.68e-44
speciesKlebsiella_pneumoniae0.3082.9e-425.95e-41
familyClostridiales_noname0.3042.7e-415.31e-40
phylumFusobacteria0.2981.44e-392.52e-38
classFusobacteriia0.2981.44e-392.52e-38
orderFusobacteriales0.2981.44e-392.52e-38
familyFusobacteriaceae0.2972.42e-394.08e-38
genusFusobacterium0.2883.71e-376.04e-36
speciesClostridium_nexile0.2831.03e-351.62e-34
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2799.32e-351.42e-33
speciesClostridium_asparagiforme0.2756.98e-341.03e-32
speciesLachnospiraceae_bacterium_6_1_63FAA0.2677.52e-321.08e-30
genusEggerthella0.2562.66e-293.69e-28
genusEnterobacter0.2546.56e-298.85e-28
speciesEggerthella_unclassified0.2531.3e-281.7e-27
speciesEubacterium_rectale-0.2472.36e-273.01e-26
speciesEnterobacter_cloacae0.2455.03e-276.25e-26
speciesAnaerostipes_unclassified0.2441.1e-261.33e-25
speciesLachnospiraceae_bacterium_1_4_56FAA0.2372.72e-253.21e-24
speciesKlebsiella_oxytoca0.2322.79e-243.21e-23
speciesEubacterium_siraeum-0.235.72e-246.43e-23
speciesFusobacterium_ulcerans0.238.77e-249.63e-23
speciesEscherichia_unclassified0.2257.44e-237.98e-22
genusMegasphaera0.2222.09e-222.19e-21
genusPantoea0.225.04e-225.06e-21
speciesPantoea_unclassified0.225.04e-225.06e-21
speciesLachnospiraceae_bacterium_5_1_57FAA0.2162.99e-212.94e-20
speciesBlautia_producta0.2163.36e-213.24e-20
genusBlautia0.2131.36e-201.28e-19
familyEubacteriaceae-0.2112.85e-202.64e-19
genusEubacterium-0.2113.02e-202.74e-19
familyBacteroidales_noname-0.2098.19e-207.03e-19
genusBacteroidales_noname-0.2098.19e-207.03e-19
speciesBacteroidales_bacterium_ph8-0.2098.19e-207.03e-19
familyRuminococcaceae-0.2071.38e-191.16e-18
speciesSubdoligranulum_unclassified-0.2053.73e-193.09e-18
genusFaecalibacterium-0.2045.63e-194.5e-18
speciesFaecalibacterium_prausnitzii-0.2045.63e-194.5e-18
genusCoprococcus-0.2045.79e-194.55e-18
classErysipelotrichia0.1961.17e-178.77e-17
orderErysipelotrichales0.1961.17e-178.77e-17
familyErysipelotrichaceae0.1961.17e-178.77e-17
genusSubdoligranulum-0.1951.84e-171.36e-16
speciesLachnospiraceae_bacterium_2_1_58FAA0.191.28e-169.29e-16
speciesCitrobacter_freundii0.1882.41e-161.72e-15
speciesEubacterium_eligens-0.1873.94e-162.78e-15
speciesRuminococcus_lactaris-0.1849.48e-166.58e-15
speciesCoprococcus_catus-0.1831.3e-158.89e-15
genusCitrobacter0.1822.06e-151.39e-14
speciesRoseburia_hominis-0.1812.71e-151.8e-14
speciesAlistipes_shahii-0.1813.2e-152.1e-14
genusButyrivibrio-0.185.19e-153.36e-14
speciesEubacterium_ramulus-0.1789.41e-156e-14
speciesFusobacterium_varium0.1761.58e-149.94e-14
speciesAnaerotruncus_colihominis0.1752.22e-141.38e-13
speciesMegasphaera_micronuciformis0.1727.43e-144.55e-13
genusBarnesiella-0.1728.22e-144.91e-13
speciesBarnesiella_intestinihominis-0.1728.22e-144.91e-13
speciesCitrobacter_unclassified0.1711.15e-136.78e-13
speciesFusobacterium_nucleatum0.171.38e-138.04e-13
speciesErysipelotrichaceae_bacterium_2_2_44A0.1682.93e-131.69e-12
speciesAnaerotruncus_unclassified-0.1674.14e-132.35e-12
speciesCoprococcus_sp_ART55_1-0.1631.51e-128.48e-12
speciesMegasphaera_unclassified0.1621.65e-129.16e-12
genusOdoribacter-0.1612.28e-121.25e-11
speciesLachnospiraceae_bacterium_8_1_57FAA-0.163.27e-121.77e-11
speciesKlebsiella_unclassified0.1578.76e-124.7e-11
genusWeissella0.1579.14e-124.85e-11
genusSolobacterium0.1579.9e-125.13e-11
speciesSolobacterium_moorei0.1579.9e-125.13e-11
classClostridia-0.1561.05e-115.33e-11
orderClostridiales-0.1561.05e-115.33e-11
speciesCoprococcus_comes-0.1561.24e-116.23e-11
speciesEggerthella_lenta0.1551.51e-117.5e-11
familyRikenellaceae-0.1532.94e-111.43e-10
genusAlistipes-0.1532.94e-111.43e-10
speciesLactobacillus_salivarius0.1514.78e-112.3e-10
speciesAlistipes_putredinis-0.1515.24e-112.5e-10
speciesEnterobacter_aerogenes0.1515.34e-112.52e-10
speciesOdoribacter_splanchnicus-0.1481.43e-106.68e-10
speciesEubacterium_dolichum0.1471.53e-107.08e-10
genusMorganella0.1471.68e-107.62e-10
speciesMorganella_morganii0.1471.68e-107.62e-10
speciesButyrivibrio_unclassified-0.1471.78e-107.97e-10
speciesBacteroides_fragilis0.1471.79e-107.97e-10
speciesAlistipes_senegalensis-0.1461.97e-108.69e-10
phylumSynergistetes0.1462.14e-109.1e-10
classSynergistia0.1462.14e-109.1e-10
orderSynergistales0.1462.14e-109.1e-10
familySynergistaceae0.1462.14e-109.1e-10
speciesLachnospiraceae_bacterium_2_1_46FAA0.1462.31e-109.73e-10
speciesAcidaminococcus_intestini0.1452.87e-101.2e-09
speciesAlistipes_finegoldii-0.1452.96e-101.23e-09
genusPeptostreptococcus0.1427.18e-102.95e-09
speciesStreptococcus_anginosus0.1418.21e-103.34e-09
speciesBifidobacterium_adolescentis-0.1419.34e-103.77e-09
speciesWeissella_cibaria0.141.1e-094.4e-09
speciesFusobacterium_mortiferum0.1391.39e-095.51e-09
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1391.45e-095.7e-09
speciesEubacterium_ventriosum-0.1372.37e-099.24e-09
speciesPeptostreptococcus_stomatis0.1372.75e-091.06e-08
genusPyramidobacter0.1363.67e-091.4e-08
speciesPyramidobacter_piscolens0.1363.67e-091.4e-08
speciesDorea_longicatena-0.1354.37e-091.65e-08
genusEnterococcus0.1355.13e-091.92e-08
familyClostridiales_Family_XI_Incertae_Sedis0.1345.5e-092.04e-08
familyEnterococcaceae0.1346.1e-092.25e-08
genusProteus0.1337.09e-092.59e-08
phylumVerrucomicrobia-0.1337.69e-092.69e-08
classVerrucomicrobiae-0.1337.69e-092.69e-08
orderVerrucomicrobiales-0.1337.69e-092.69e-08
familyVerrucomicrobiaceae-0.1337.69e-092.69e-08
genusAkkermansia-0.1337.69e-092.69e-08
speciesAkkermansia_muciniphila-0.1337.69e-092.69e-08
speciesBifidobacterium_dentium0.1337.98e-092.77e-08
genusAcidaminococcus0.1311.28e-084.41e-08
genusCoprobacter-0.131.57e-085.33e-08
speciesCoprobacter_fastidiosus-0.131.57e-085.33e-08
orderLactobacillales0.131.61e-085.43e-08
classBacilli0.1292.33e-087.8e-08
genusClostridiaceae_noname0.1273.47e-081.15e-07
speciesClostridiaceae_bacterium_JC1180.1273.47e-081.15e-07
genusErysipelotrichaceae_noname0.1273.61e-081.18e-07
speciesWeissella_confusa0.1264.1e-081.33e-07
speciesKlebsiella_sp_MS_92_30.1238.5e-082.75e-07
speciesProteus_mirabilis0.1231.02e-073.28e-07
genusMegamonas0.1231.05e-073.35e-07
speciesMegamonas_unclassified0.1231.06e-073.36e-07
speciesEubacterium_limosum0.1221.23e-073.87e-07
speciesLactobacillus_oris0.122.1e-076.56e-07
familyLeuconostocaceae0.1192.63e-078.17e-07
speciesMitsuokella_unclassified-0.1173.63e-071.12e-06
speciesStreptococcus_lutetiensis0.1174.1e-071.26e-06
speciesLactococcus_garvieae0.1164.49e-071.37e-06
familyBacillales_noname0.1164.91e-071.48e-06
genusGemella0.1164.91e-071.48e-06
genusPseudoflavonifractor-0.1165.12e-071.52e-06
speciesPseudoflavonifractor_capillosus-0.1165.12e-071.52e-06
genusAdlercreutzia-0.1165.25e-071.54e-06
speciesAdlercreutzia_equolifaciens-0.1165.25e-071.54e-06
speciesBacteroides_stercoris0.1156.65e-071.94e-06
speciesSutterella_wadsworthensis-0.1156.8e-071.97e-06
speciesClostridium_sp_ATCC_BAA_4420.1139.06e-072.61e-06
speciesEnterococcus_faecalis0.1121.08e-063.09e-06
genusMitsuokella-0.1121.12e-063.18e-06
genusCampylobacter0.1121.16e-063.28e-06
familyActinomycetaceae0.1121.21e-063.4e-06
speciesClostridium_perfringens0.1121.24e-063.46e-06
familyCampylobacteraceae0.1111.47e-064.08e-06
speciesRoseburia_intestinalis-0.1111.57e-064.33e-06
classDeltaproteobacteria0.111.98e-065.36e-06
orderDesulfovibrionales0.111.98e-065.36e-06
familyDesulfovibrionaceae0.111.98e-065.36e-06
classEpsilonproteobacteria0.112e-065.36e-06
orderCampylobacterales0.112e-065.36e-06
speciesCoprococcus_eutactus-0.1092.28e-066.08e-06
familyBacteroidaceae0.1092.33e-066.14e-06
genusBacteroides0.1092.33e-066.14e-06
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1073.57e-069.36e-06
speciesRoseburia_inulinivorans-0.1073.61e-069.41e-06
genusActinomyces0.1063.99e-061.03e-05
speciesBacteroides_pectinophilus-0.1064.55e-061.17e-05
speciesGemella_morbillorum0.1064.68e-061.2e-05
genusPeptoniphilus0.1064.74e-061.21e-05
speciesBilophila_wadsworthia0.1055.46e-061.39e-05
genusRoseburia-0.1055.89e-061.49e-05
familyStreptococcaceae0.1046.38e-061.6e-05
phylumFirmicutes-0.1046.6e-061.65e-05
speciesAlistipes_sp_HGB5-0.1046.92e-061.72e-05
speciesPrevotella_buccae0.1047.09e-061.75e-05
speciesAnaerostipes_hadrus-0.1029.44e-062.32e-05
speciesMegamonas_rupellensis0.1021e-052.43e-05
speciesParabacteroides_unclassified0.1021e-052.43e-05
genusStreptococcus0.1021.09e-052.62e-05
speciesStreptococcus_pasteurianus0.1021.09e-052.62e-05
speciesC2likevirus_unclassified-0.1011.1e-052.64e-05
speciesVeillonella_parvula0.1011.17e-052.79e-05
genusSutterella-0.1011.18e-052.8e-05
speciesLactobacillus_mucosae0.1011.26e-052.97e-05
genusRuminococcus-0.1011.29e-053.03e-05
speciesStreptococcus_mitis_oralis_pneumoniae0.1011.3e-053.04e-05
speciesErysipelotrichaceae_bacterium_3_1_530.1011.33e-053.09e-05
genusC2likevirus-0.11.4e-053.24e-05
genusBilophila0.11.46e-053.36e-05
speciesParvimonas_unclassified0.11.5e-053.44e-05
genusParvimonas0.11.53e-053.49e-05
speciesRuminococcus_callidus-0.0991.75e-053.97e-05
orderBacillales0.0991.78e-054.02e-05
familyLactobacillaceae0.0991.92e-054.32e-05
speciesButyrivibrio_crossotus-0.0972.65e-055.93e-05
speciesBilophila_unclassified0.0963.11e-056.92e-05
speciesAlistipes_onderdonkii-0.0963.21e-057.11e-05
genusLactobacillus0.0963.25e-057.17e-05
speciesAcidaminococcus_fermentans0.0954.2e-059.22e-05
speciesLactobacillus_crispatus0.0944.67e-050.000102
speciesCollinsella_aerofaciens-0.0935.21e-050.000113
genusHoldemania0.0926.79e-050.000147
speciesSubdoligranulum_sp_4_3_54A2FAA0.0926.87e-050.000148
speciesEnterococcus_faecium0.0927.39e-050.000159
speciesMegasphaera_elsdenii0.0917.8e-050.000167
classNegativicutes0.0918.19e-050.000173
orderSelenomonadales0.0918.19e-050.000173
speciesStreptococcus_infantarius0.099.65e-050.000203
speciesMegamonas_hypermegale0.099.88e-050.000207
speciesBacteroides_thetaiotaomicron0.0890.0001120.000234
genusDorea-0.0890.0001140.000236
genusLachnospiraceae_noname0.0890.0001140.000236
classMethanobacteria-0.0890.0001220.000249
orderMethanobacteriales-0.0890.0001220.000249
familyMethanobacteriaceae-0.0890.0001220.000249
speciesEnterobacteria_phage_HK5440.0880.0001450.000295
speciesClostridium_bartlettii0.0880.0001470.000298
speciesPorphyromonas_uenonis0.0870.0001560.000315
speciesClostridium_sp_KLE_17550.0870.0001570.000315
speciesMethanobrevibacter_smithii-0.0870.0001780.000356
speciesStreptococcus_salivarius0.0860.0001810.00036
phylumEuryarchaeota-0.0860.0001820.000361
speciesClostridium_sp_L2_50-0.0860.0001920.000379
speciesCollinsella_tanakaei0.0860.0001980.000389
familyMyoviridae0.0860.0002090.000409
genusMethanobrevibacter-0.0850.0002310.000451
speciesPeptostreptococcus_anaerobius0.0850.0002450.000476
speciesBacteroides_uniformis-0.0840.0002670.000516
speciesStreptococcus_thermophilus-0.0840.0002990.000576
speciesEubacterium_sp_3_1_310.0830.0003190.000612
genusVeillonella0.0820.0003550.000678
genusPrevotella0.0820.0003640.000693
speciesBacteroides_massiliensis0.0820.0003660.000694
familyVeillonellaceae0.0820.0004160.000785
speciesStreptococcus_australis0.0810.000450.000846
speciesRuminococcus_torques0.0810.0004910.00092
orderAeromonadales0.080.000530.000989
speciesVeillonella_dispar0.080.0005410.00101
speciesAggregatibacter_segnis0.0790.0006720.00124
speciesBifidobacterium_breve0.0780.0007030.0013
speciesBacteroides_sp_3_1_190.0780.0007220.00133
speciesBacteroides_cellulosilyticus-0.0780.0007510.00137
familyPeptostreptococcaceae0.0780.0007550.00138
speciesCampylobacter_concisus0.0770.0008010.00145
speciesParaprevotella_clara-0.0760.001070.00194
speciesLactobacillus_fermentum0.0750.001110.002
speciesLactobacillus_vaginalis0.0750.001130.00203
speciesEubacterium_hallii-0.0750.001160.00207
speciesCollinsella_intestinalis0.0740.001280.00228
speciesRuminococcus_bromii-0.0730.00150.00266
genusAggregatibacter0.0730.001570.00278
speciesRuminococcus_obeum-0.0730.00160.00282
speciesPrevotella_copri0.0730.001680.00295
speciesCoprobacillus_sp_D60.0720.00180.00315
speciesParaprevotella_unclassified-0.0720.001820.00317
speciesBacteroides_eggerthii0.0720.00190.0033
genusParaprevotella-0.0720.001920.00332
speciesRuminococcus_champanellensis-0.0720.001940.00334
speciesStreptococcus_gordonii0.070.002360.00405
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.070.002460.00421
speciesClostridium_leptum-0.0690.002710.00462
genusButyricicoccus0.0690.002830.00479
speciesButyricicoccus_pullicaecorum0.0690.002830.00479
speciesDorea_formicigenerans-0.0690.002930.00494
speciesErysipelotrichaceae_bacterium_6_1_450.0680.00320.00538
speciesBacteroides_oleiciplenus0.0680.003270.00547
speciesAlistipes_indistinctus-0.0680.003280.00547
speciesPrevotella_bivia0.0680.00340.00563
speciesOdoribacter_unclassified-0.0680.00340.00563
speciesHoldemania_sp_AP20.0680.003410.00563
speciesSutterella_parvirubra0.0670.004010.00659
speciesBifidobacterium_catenulatum-0.0660.004420.00724
speciesStreptococcus_vestibularis0.0660.004560.00745
genusLambdalikevirus0.0650.004770.00776
speciesCoprobacillus_sp_29_10.0650.004840.00785
speciesParabacteroides_sp_D13-0.0650.005010.0081
speciesBifidobacterium_pseudocatenulatum0.0650.005240.00844
speciesAlistipes_sp_AP11-0.0640.005810.00933
speciesBacteroides_nordii0.0640.005850.00934
familySutterellaceae-0.0640.005860.00934
genusSutterellaceae_unclassified0.0630.006610.0105
familyPropionibacteriaceae-0.0620.006890.0109
genusCollinsella-0.0620.00750.0118
speciesPrevotella_stercorea0.0610.007880.0124
speciesLeuconostoc_lactis0.0610.007910.0124
orderActinomycetales0.0610.008160.0128
speciesParabacteroides_goldsteinii0.0610.00830.0129
orderBurkholderiales-0.060.009730.0151
speciesBacteroides_xylanisolvens0.060.010.0155
speciesParaprevotella_xylaniphila-0.0570.01390.0214
speciesPeptostreptococcaceae_noname_unclassified-0.0570.01420.0218
speciesDialister_invisus-0.0570.01420.0218
speciesParabacteroides_merdae-0.0570.01450.0221
speciesVeillonella_atypica0.0560.01480.0225
speciesHoldemania_filiformis0.0550.01640.0249
speciesLachnospiraceae_bacterium_1_1_57FAA0.0550.01830.0277
classBetaproteobacteria-0.0540.01990.03
speciesPropionibacterium_freudenreichii-0.0530.02240.0337
familySiphoviridae-0.0530.02310.0346
speciesBacteroides_clarus0.0520.02420.0361
familyAcidaminococcaceae0.0510.02610.0389
speciesLactobacillus_acidophilus-0.0510.02660.0395
speciesBacteroides_salyersiae0.0510.02690.0398
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0510.02780.041
speciesErysipelotrichaceae_bacterium_21_30.050.02920.0429
speciesVeillonella_unclassified0.050.02950.0432
speciesMegamonas_funiformis0.050.02970.0434
speciesLactobacillus_amylovorus0.050.03160.046
speciesBifidobacterium_angulatum-0.0490.03250.0472
speciesRuminococcus_sp_5_1_39BFAA-0.0490.03270.0473
genusPeptostreptococcaceae_noname0.0490.03350.0484
genusPorphyromonas0.0490.03390.0488
speciesBacteroides_sp_4_3_47FAA-0.0490.03430.0492
speciesEubacterium_biforme-0.0480.03740.0535
speciesBacteroides_plebeius0.0480.03790.054
genusRuminococcaceae_noname-0.0480.03830.0543
speciesRuminococcaceae_bacterium_D16-0.0480.03830.0543
speciesLactococcus_phage_phi7-0.0470.0420.0594
speciesDesulfovibrio_desulfuricans0.0470.04340.0611
speciesLactobacillus_gasseri0.0470.0440.0618
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0460.04450.0623
speciesBacteroides_intestinalis0.0450.05210.0728
speciesMethanobrevibacter_unclassified-0.0450.0530.0738
genusPropionibacterium-0.0440.05650.0784
speciesRothia_mucilaginosa0.0440.05680.0785
speciesParabacteroides_johnsonii0.0440.05690.0785
genusDialister-0.0430.06070.0835
speciesPorphyromonas_asaccharolytica0.0430.0610.0837
speciesOscillibacter_sp_KLE_1728-0.0430.06490.0888
familyPorphyromonadaceae-0.0430.06560.0895
genusCoriobacteriaceae_noname0.0420.06940.0944
speciesLactobacillus_sanfranciscensis0.0410.0740.1
speciesBacteroides_finegoldii0.0410.07540.102
familyViruses_noname0.0410.07580.102
genusViruses_noname0.0410.07580.102
speciesCoriobacteriaceae_bacterium_phI0.0410.07640.102
genusTunalikevirus0.0410.07940.106
genusSuccinatimonas0.040.08030.107
speciesSuccinatimonas_hippei0.040.08030.107
genusParabacteroides0.040.0810.107
genusParasutterella-0.040.08240.109
speciesParasutterella_excrementihominis-0.040.08240.109
speciesLactococcus_phage_jm2-0.040.08370.11
speciesLactococcus_phage_936_sensu_lato-0.0390.09020.118
genusSiphoviridae_noname-0.0390.09050.118
speciesStreptococcus_mutans0.0390.0910.119
speciesStreptococcus_sanguinis0.0390.09260.12
familyLachnospiraceae-0.0380.09810.127
genusSlackia0.0380.09860.128
familyMicrococcaceae0.0380.09940.128
genusDesulfovibrio0.0380.10.129
genusRothia0.0380.1020.13
speciesParabacteroides_distasonis0.0380.1020.13
familySuccinivibrionaceae0.0370.1130.144
speciesTuricibacter_unclassified-0.0360.120.153
orderCoriobacteriales0.0330.150.19
familyCoriobacteriaceae0.0330.150.19
genusAnaerotruncus-0.0330.1510.19
speciesLactococcus_phage_bIL67-0.0330.1510.19
speciesBacteroides_sp_2_1_22-0.0330.1530.192
speciesBacteroides_coprophilus-0.0330.1560.195
speciesLactobacillus_reuteri0.0330.1570.196
speciesKlebsiella_phage_KP360.0320.1690.21
speciesAcidaminococcus_unclassified0.0310.1770.219
speciesRoseburia_unclassified-0.0310.1770.219
speciesHoldemania_unclassified-0.0310.1810.224
genusTuricibacter-0.030.1940.239
speciesLactococcus_phage_P680-0.0290.2110.259
speciesLactobacillus_ruminis-0.0290.2110.259
genusOlsenella0.0290.2120.259
genusHaemophilus-0.0280.2260.276
genusAcidaminococcaceae_unclassified-0.0280.230.28
speciesEggerthella_sp_1_3_56FAA0.0270.2440.296
speciesHaemophilus_parainfluenzae-0.0270.2510.304
speciesDialister_succinatiphilus0.0260.260.314
orderPasteurellales-0.0260.2650.318
familyPasteurellaceae-0.0260.2650.318
genusLeuconostoc0.0260.2690.322
speciesDesulfovibrio_piger-0.0250.2730.326
speciesBacteroides_faecis0.0250.2770.33
familyStaphylococcaceae0.0240.2950.351
phylumActinobacteria0.0230.3110.367
classActinobacteria0.0230.3110.367
speciesBacteroides_ovatus0.0230.3110.367
speciesLactobacillus_plantarum0.0230.3160.372
speciesTuricibacter_sanguinis-0.0230.3240.38
speciesLactococcus_lactis-0.0230.3250.381
speciesStreptococcus_phage_Sfi210.0230.3260.381
genusGordonibacter-0.0220.3410.396
speciesGordonibacter_pamelaeae-0.0220.3410.396
speciesParabacteroides_sp_20_3-0.0210.3710.43
phylumViruses_noname-0.020.3810.44
classViruses_noname-0.020.3810.44
orderCaudovirales-0.020.3830.441
genusMyoviridae_noname0.0180.4250.488
speciesBacteroides_dorei-0.0180.4290.491
speciesBacteroides_vulgatus-0.0180.4320.494
speciesMitsuokella_multacida0.0170.4560.52
speciesOlsenella_unclassified0.0170.4720.537
speciesRuminococcus_sp_JC3040.0160.4790.543
familyPodoviridae0.0160.4840.548
speciesBifidobacterium_bifidum0.0160.4880.551
speciesHaemophilus_paraphrohaemolyticus0.0160.4960.559
speciesLactobacillus_rhamnosus0.0150.5040.566
familyOxalobacteraceae-0.0140.5380.603
familyBurkholderiales_noname-0.0140.5480.611
genusOxalobacter-0.0140.5490.611
speciesOxalobacter_formigenes-0.0140.5490.611
speciesStreptococcus_parasanguinis0.0130.5670.63
genusBurkholderiales_noname-0.0130.570.63
speciesBurkholderiales_bacterium_1_1_47-0.0130.570.63
speciesOscillibacter_sp_KLE_17450.0130.5760.635
speciesBacteroides_sp_1_1_60.0120.6080.667
speciesBifidobacterium_longum-0.0120.6080.667
speciesDorea_unclassified0.0120.6160.675
speciesBifidobacterium_animalis-0.0120.6190.676
speciesLactobacillus_delbrueckii-0.0110.620.676
speciesBacteroides_fluxus0.0110.6310.686
speciesClostridium_spiroforme-0.010.6610.717
genusLactococcus0.010.670.725
genusStaphylococcus0.0090.7040.76
genusAnaerostipes0.0080.7240.78
genusActinobacillus0.0080.7320.785
speciesActinobacillus_unclassified0.0080.7320.785
familyOscillospiraceae0.0080.7380.788
genusOscillibacter0.0080.7380.788
speciesEubacterium_cylindroides0.0060.7810.832
genusCatenibacterium-0.0060.7960.842
speciesBacteroides_salanitronis-0.0060.7960.842
speciesCatenibacterium_mitsuokai-0.0060.7960.842
speciesBacteroides_caccae0.0040.8680.917
speciesLactobacillus_casei_paracasei0.0040.8790.926
orderViruses_noname0.0030.9020.948
speciesBacteroides_barnesiae0.0030.910.954
speciesCollinsella_unclassified-0.0030.9120.954
genusBifidobacterium-0.0020.920.961
genusButyricimonas0.0020.9260.963
speciesButyricimonas_synergistica0.0020.9260.963
speciesHaemophilus_sputorum0.0020.9280.963
speciesOdoribacter_laneus-0.0020.9440.975
speciesOscillibacter_unclassified0.0020.9440.975
speciesAlistipes_unclassified0.0010.9520.976
speciesBlautia_hydrogenotrophica-0.0010.9540.976
genusPhascolarctobacterium-0.0010.9580.976
speciesPhascolarctobacterium_succinatutens-0.0010.9580.976
classBacteroidia0.0010.9590.976
orderBacteroidales0.0010.9590.976
phylumBacteroidetes0.0010.960.976
orderBifidobacteriales0.0010.9640.976
familyBifidobacteriaceae0.0010.9640.976
orderPseudomonadales-0.0010.9710.981
genusMethanosphaera-0.0010.9830.988
speciesMethanosphaera_stadtmanae-0.0010.9830.988
speciesSlackia_piriformis0.00.9840.988
speciesBacteroides_coprocola0.00.9880.989
familyPrevotellaceae0.00.9890.989
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.009926161020.002416439231571.76229685338e-063281.09061
Liver cirrhosisChina1201140.004177274896530.003249705009575.65540998154e-05467915.7177
Type II diabetesChina1831850.01031005396140.007427144272040.0008981376546715785.21498
Type II diabetesDenmark752770.002902517822240.001948852344570.00387788413126333010.9155
Colorectal cancerAustria64350.007225321662260.002992886790580.031971037674219906.73298
Ulcerative colitisSpain78660.002433678262120.002416439231570.0725974433619589619.4498
Type II diabetesSweden53920.004108200352620.002805297205640.166851019431582619.7291
Rheumatoid arthritisChina127980.005092630116820.004889064461310.175431311181798426.6249
ObesityDenmark1691230.002287851380650.001592020545520.4935514540451915762.9937
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382