MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-03-19 10:14:03 PST
Job id & description: 1781, GRDH
Query type: protein
Count queries & homologs: 12, 12
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
MH0358_GL00368201975700Lack 5'-endK10670NOG304585FirmicutesClostridium100.0100.0100.0
O2.CD2-0-PT_GL00694441998206CompleteK10670NOG304585Firmicutesunknown100.0100.0100.0
O2.UC11-1_GL01095582019273CompleteK10670NOG304585FirmicutesDorea100.0100.0100.0
T2D-135A_GL00245482044064Lack 5'-endK10670NOG304585FirmicutesClostridium100.0100.0100.0
V1.FI33_GL00914902129832Lack 5'-endK10670NOG304585FirmicutesClostridium100.0100.0100.0
MH0370_GL00449342182761CompleteK10670NOG304585unknownunknown100.0100.0100.0
V1.FI05_GL00116132185848CompleteK10670NOG304585unknownunknown100.0100.0100.0
V1.CD54-0_GL00122222185686CompleteK10670NOG304585unknownunknown100.0100.0100.0
411465.PEPMIC_009612189645CompleteK10670NOG304585Firmicutesunknown100.0100.0100.0
MH0343_GL01757402182408CompleteK10670NOG304585unknownunknown100.0100.0100.0
V1.UC17-0_GL00158272186470CompleteK10670NOG304585Firmicutesunknown100.0100.0100.0
V1.FI14_GL02101693210220Lack 3'-endK10670NOG304585Synergistetesunknown100.0100.0100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusBlautia0.5711.45e-1626.84e-160
speciesClostridium_bolteae0.5071.64e-1223.87e-120
genusEggerthella0.58.83e-1191.39e-116
speciesEggerthella_unclassified0.4854.29e-1115.06e-109
genusCoprobacillus0.4492.61e-932.46e-91
speciesCoprobacillus_unclassified0.4311.94e-851.53e-83
speciesClostridium_clostridioforme0.4262.02e-831.33e-81
speciesEggerthella_lenta0.4262.26e-831.33e-81
speciesRuminococcus_torques0.4163.83e-792.01e-77
familyClostridiaceae0.4164.63e-792.19e-77
speciesRuminococcus_gnavus0.4142.21e-789.48e-77
genusClostridium0.4135.61e-782.21e-76
speciesClostridium_ramosum0.4015.12e-731.86e-71
speciesClostridiales_bacterium_1_7_47FAA0.381.81e-656.1e-64
speciesLachnospiraceae_bacterium_1_4_56FAA0.3773.59e-641.03e-62
orderCoriobacteriales0.3773.72e-641.03e-62
familyCoriobacteriaceae0.3773.72e-641.03e-62
speciesLachnospiraceae_bacterium_5_1_57FAA0.3766.03e-641.58e-62
speciesClostridium_symbiosum0.3743.12e-637.75e-62
speciesDorea_formicigenerans0.3721.52e-623.59e-61
speciesBlautia_producta0.3653.95e-608.88e-59
speciesClostridium_hathewayi0.3475.95e-541.28e-52
speciesLachnospiraceae_bacterium_9_1_43BFAA0.3391.51e-513.1e-50
speciesErysipelotrichaceae_bacterium_2_2_44A0.3352.01e-503.95e-49
genusAnaerostipes0.3321.67e-493.15e-48
genusLachnospiraceae_noname0.3314.44e-498.06e-48
genusDorea0.3247.83e-471.37e-45
familyActinomycetaceae0.3143.62e-446.1e-43
genusClostridiales_noname0.3145.62e-449.15e-43
phylumActinobacteria0.3139.62e-441.46e-42
classActinobacteria0.3139.62e-441.46e-42
genusActinomyces0.315.22e-437.7e-42
speciesRuminococcus_sp_5_1_39BFAA0.3082.3e-423.29e-41
familyStreptococcaceae0.3069.58e-421.33e-40
genusStreptococcus0.3033.96e-415.34e-40
genusSolobacterium0.3028.6e-411.1e-39
speciesSolobacterium_moorei0.3028.6e-411.1e-39
classErysipelotrichia0.2994.97e-405.86e-39
orderErysipelotrichales0.2994.97e-405.86e-39
familyErysipelotrichaceae0.2994.97e-405.86e-39
speciesAnaerostipes_unclassified0.2971.93e-392.22e-38
speciesClostridium_citroniae0.2941.16e-381.3e-37
speciesLachnospiraceae_bacterium_6_1_63FAA0.2932.69e-382.95e-37
orderLactobacillales0.2892.14e-372.3e-36
classBacilli0.2893.25e-373.41e-36
speciesAlistipes_shahii-0.2838.97e-369.2e-35
speciesLachnospiraceae_bacterium_2_1_58FAA0.2821.73e-351.74e-34
familyBacillales_noname0.2772.56e-342.47e-33
genusGemella0.2772.56e-342.47e-33
phylumBacteroidetes-0.2773.14e-342.89e-33
classBacteroidia-0.2773.18e-342.89e-33
orderBacteroidales-0.2773.18e-342.89e-33
genusOdoribacter-0.2766.05e-345.39e-33
speciesOdoribacter_splanchnicus-0.2733.1e-332.71e-32
speciesClostridium_asparagiforme0.2683.93e-323.37e-31
speciesBlautia_hydrogenotrophica0.2678.15e-326.87e-31
familyClostridiales_noname0.2669.96e-328.25e-31
genusFlavonifractor0.2661.29e-311.03e-30
speciesFlavonifractor_plautii0.2661.29e-311.03e-30
speciesRuminococcus_obeum0.2612.1e-301.65e-29
speciesLachnospiraceae_bacterium_5_1_63FAA0.2595.65e-304.37e-29
familyRikenellaceae-0.2586.56e-304.91e-29
genusAlistipes-0.2586.56e-304.91e-29
familyLachnospiraceae0.2562.1e-291.55e-28
speciesAlistipes_putredinis-0.2544.99e-293.62e-28
speciesEubacterium_hallii0.2546.73e-294.81e-28
orderBacillales0.2513.45e-282.43e-27
orderActinomycetales0.254.21e-282.92e-27
genusGordonibacter0.2422.05e-261.38e-25
speciesGordonibacter_pamelaeae0.2422.05e-261.38e-25
speciesStreptococcus_sanguinis0.2414.4e-262.93e-25
speciesAnaerotruncus_colihominis0.2372.27e-251.49e-24
speciesEubacterium_eligens-0.2373.23e-252.09e-24
speciesErysipelotrichaceae_bacterium_21_30.2363.81e-252.43e-24
familyBacteroidales_noname-0.2331.81e-241.11e-23
genusBacteroidales_noname-0.2331.81e-241.11e-23
speciesBacteroidales_bacterium_ph8-0.2331.81e-241.11e-23
speciesStreptococcus_thermophilus0.2332.15e-241.3e-23
genusPeptostreptococcus0.2314.01e-242.4e-23
speciesErysipelotrichaceae_bacterium_6_1_450.2314.28e-242.53e-23
genusErysipelotrichaceae_noname0.2222.21e-221.29e-21
speciesAlistipes_finegoldii-0.2222.6e-221.5e-21
familyClostridiales_Family_XI_Incertae_Sedis0.226.04e-223.43e-21
speciesStreptococcus_salivarius0.2181.69e-219.5e-21
orderBifidobacteriales0.2172.45e-211.34e-20
familyBifidobacteriaceae0.2172.45e-211.34e-20
speciesAlistipes_senegalensis-0.2172.5e-211.36e-20
speciesErysipelotrichaceae_bacterium_3_1_530.2154.93e-212.64e-20
genusBifidobacterium0.2121.71e-209.07e-20
speciesEubacterium_dolichum0.2088.94e-204.69e-19
speciesStreptococcus_anginosus0.2045.96e-193.09e-18
speciesParabacteroides_merdae-0.2021.26e-186.46e-18
speciesEscherichia_coli0.2011.6e-188.12e-18
genusEscherichia0.1994.18e-182.1e-17
speciesStreptococcus_parasanguinis0.1985.67e-182.82e-17
speciesStreptococcus_mitis_oralis_pneumoniae0.1961.06e-175.21e-17
phylumFirmicutes0.1951.7e-178.27e-17
speciesStreptococcus_australis0.1951.99e-179.58e-17
speciesAnaerostipes_hadrus0.1942.44e-171.16e-16
genusRuminococcus0.1933.45e-171.63e-16
familySutterellaceae-0.1926.23e-172.91e-16
speciesEubacterium_limosum0.1919.33e-174.32e-16
genusClostridiaceae_noname0.1891.76e-167.99e-16
speciesClostridiaceae_bacterium_JC1180.1891.76e-167.99e-16
speciesClostridium_nexile0.1891.96e-168.81e-16
genusHoldemania0.1873.19e-161.42e-15
classBetaproteobacteria-0.1864.34e-161.91e-15
orderBurkholderiales-0.1856.55e-162.86e-15
familyPrevotellaceae-0.1858.78e-163.8e-15
speciesHaemophilus_parainfluenzae-0.1841.04e-154.46e-15
genusHaemophilus-0.1831.41e-156e-15
familyEnterococcaceae0.1821.81e-157.63e-15
speciesBifidobacterium_longum0.1822.01e-158.4e-15
orderPasteurellales-0.183.81e-151.56e-14
familyPasteurellaceae-0.183.81e-151.56e-14
genusEnterococcus0.184.11e-151.67e-14
orderEnterobacteriales0.185.24e-152.1e-14
familyEnterobacteriaceae0.185.24e-152.1e-14
speciesStreptococcus_gordonii0.1795.48e-152.17e-14
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1787.71e-153.03e-14
familyPorphyromonadaceae-0.1771.18e-144.6e-14
familyFusobacteriaceae0.1761.76e-146.81e-14
speciesPeptostreptococcus_stomatis0.1752.17e-148.3e-14
speciesEubacterium_sp_3_1_310.1752.18e-148.3e-14
phylumFusobacteria0.1743.75e-141.39e-13
classFusobacteriia0.1743.75e-141.39e-13
orderFusobacteriales0.1743.75e-141.39e-13
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1734.57e-141.69e-13
genusBarnesiella-0.1734.84e-141.76e-13
speciesBarnesiella_intestinihominis-0.1734.84e-141.76e-13
familyPeptostreptococcaceae0.1734.99e-141.8e-13
genusFusobacterium0.1726e-142.15e-13
speciesRoseburia_hominis-0.1728e-142.84e-13
speciesStreptococcus_vestibularis0.1719.49e-143.34e-13
speciesStreptococcus_mutans0.171.21e-134.23e-13
genusFaecalibacterium-0.171.28e-134.41e-13
speciesFaecalibacterium_prausnitzii-0.171.28e-134.41e-13
speciesSubdoligranulum_sp_4_3_54A2FAA0.1692.12e-137.25e-13
genusParvimonas0.1682.59e-138.73e-13
speciesParvimonas_unclassified0.1682.59e-138.73e-13
speciesEubacterium_siraeum-0.1664.53e-131.52e-12
genusPeptoniphilus0.1612.68e-128.91e-12
speciesFusobacterium_varium0.163.22e-121.06e-11
genusLeuconostoc0.1586.48e-122.12e-11
speciesRoseburia_inulinivorans-0.1578.54e-122.78e-11
speciesLactobacillus_delbrueckii0.1579.77e-123.16e-11
classClostridia0.1561.27e-114.05e-11
orderClostridiales0.1561.27e-114.05e-11
speciesCoprococcus_sp_ART55_1-0.1523.5e-111.11e-10
familyLeuconostocaceae0.1498.3e-112.61e-10
speciesGemella_morbillorum0.1499.57e-112.99e-10
speciesClostridium_sp_KLE_17550.1491.08e-103.35e-10
genusPeptostreptococcaceae_noname0.1427.74e-102.38e-09
speciesParaprevotella_xylaniphila-0.1427.77e-102.38e-09
genusLactococcus0.1418.33e-102.54e-09
genusAdlercreutzia0.1391.57e-094.72e-09
speciesAdlercreutzia_equolifaciens0.1391.57e-094.72e-09
speciesClostridium_bartlettii0.1391.73e-095.17e-09
genusButyrivibrio-0.1382.14e-096.35e-09
genusCollinsella0.1382.33e-096.87e-09
speciesFusobacterium_ulcerans0.1372.98e-098.74e-09
genusRothia0.1363.98e-091.16e-08
classGammaproteobacteria0.1354.14e-091.2e-08
familyMicrococcaceae0.1354.36e-091.25e-08
speciesLactococcus_lactis0.1345.46e-091.56e-08
speciesPeptostreptococcus_anaerobius0.1346.45e-091.83e-08
familyLactobacillaceae0.1337.99e-092.26e-08
speciesDorea_longicatena0.1329.2e-092.58e-08
speciesRuminococcus_callidus-0.1329.65e-092.7e-08
speciesLactobacillus_casei_paracasei0.1311.37e-083.8e-08
genusPrevotella-0.131.69e-084.66e-08
genusCoriobacteriaceae_noname0.131.85e-085.08e-08
speciesFusobacterium_nucleatum0.1282.5e-086.82e-08
speciesLactobacillus_rhamnosus0.1282.81e-087.62e-08
speciesPrevotella_copri-0.1282.83e-087.63e-08
speciesCoriobacteriaceae_bacterium_phI0.1273.45e-089.25e-08
speciesBifidobacterium_animalis0.1273.64e-089.71e-08
speciesBacteroides_vulgatus-0.1273.97e-081.05e-07
genusPropionibacterium0.1264.82e-081.27e-07
speciesEggerthella_sp_1_3_56FAA0.1255.64e-081.48e-07
speciesCoprococcus_eutactus-0.1255.71e-081.49e-07
genusLactobacillus0.1255.9e-081.53e-07
speciesButyrivibrio_crossotus-0.1256.22e-081.6e-07
speciesPropionibacterium_freudenreichii0.1256.56e-081.68e-07
genusCoprobacter-0.1247.75e-081.97e-07
speciesCoprobacter_fastidiosus-0.1247.75e-081.97e-07
genusRoseburia-0.1248.17e-082.06e-07
speciesEnterococcus_faecium0.1239.59e-082.41e-07
speciesParaprevotella_unclassified-0.121.75e-074.37e-07
genusParaprevotella-0.121.78e-074.42e-07
speciesLactobacillus_plantarum0.121.99e-074.92e-07
speciesLactobacillus_ruminis-0.1192.3e-075.65e-07
genusParabacteroides-0.1192.68e-076.55e-07
speciesRothia_mucilaginosa0.1173.7e-079e-07
speciesParaprevotella_clara-0.1156.18e-071.5e-06
speciesAlistipes_onderdonkii-0.1138.68e-072.09e-06
speciesEnterococcus_faecalis0.1139.52e-072.28e-06
genusParasutterella-0.1121.12e-062.66e-06
speciesParasutterella_excrementihominis-0.1121.12e-062.66e-06
speciesAnaerotruncus_unclassified-0.1121.27e-063e-06
speciesLachnospiraceae_bacterium_2_1_46FAA0.1111.5e-063.52e-06
genusMitsuokella-0.111.98e-064.63e-06
speciesMitsuokella_unclassified-0.1092.31e-065.37e-06
genusOxalobacter-0.1073.75e-068.63e-06
speciesOxalobacter_formigenes-0.1073.75e-068.63e-06
speciesLachnospiraceae_bacterium_1_1_57FAA0.1063.94e-069.03e-06
speciesBacteroides_uniformis-0.1064.6e-061.05e-05
speciesPrevotella_bivia0.1055.28e-061.2e-05
speciesRuminococcus_lactaris-0.1055.62e-061.27e-05
speciesBifidobacterium_dentium0.1046.75e-061.52e-05
speciesBacteroides_caccae-0.1047.26e-061.62e-05
speciesEubacterium_rectale-0.1029.9e-062.2e-05
speciesPrevotella_stercorea-0.1021.06e-052.35e-05
familyOxalobacteraceae-0.1021.07e-052.36e-05
genusButyricicoccus0.1011.24e-052.71e-05
speciesButyricicoccus_pullicaecorum0.1011.24e-052.71e-05
speciesBacteroides_xylanisolvens-0.0991.65e-053.59e-05
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0991.66e-053.59e-05
speciesClostridium_sp_L2_50-0.0991.76e-053.79e-05
speciesLactobacillus_gasseri0.0991.85e-053.97e-05
genusSutterellaceae_unclassified-0.0991.88e-054.02e-05
speciesEscherichia_unclassified0.0991.89e-054.02e-05
genusMorganella0.0982.05e-054.32e-05
speciesMorganella_morganii0.0982.05e-054.32e-05
speciesSutterella_wadsworthensis-0.0982.1e-054.41e-05
speciesDesulfovibrio_piger-0.0982.21e-054.62e-05
speciesHoldemania_filiformis0.0982.24e-054.66e-05
speciesHoldemania_sp_AP20.0972.61e-055.38e-05
speciesClostridium_leptum0.0972.61e-055.38e-05
familyPropionibacteriaceae0.0962.94e-056.03e-05
genusPantoea0.0963.11e-056.33e-05
speciesPantoea_unclassified0.0963.11e-056.33e-05
speciesSubdoligranulum_unclassified-0.0963.21e-056.5e-05
genusSiphoviridae_noname0.0953.77e-057.6e-05
speciesCollinsella_intestinalis0.0953.94e-057.91e-05
speciesClostridium_sp_ATCC_BAA_4420.0954.05e-058.1e-05
speciesCollinsella_aerofaciens0.0954.25e-058.46e-05
genusSutterella-0.0926.84e-050.000136
speciesEubacterium_ramulus0.0917.42e-050.000147
genusBurkholderiales_noname-0.0917.7e-050.000151
speciesBurkholderiales_bacterium_1_1_47-0.0917.7e-050.000151
speciesBacteroides_plebeius-0.0917.72e-050.000151
familyBurkholderiales_noname-0.090.0001010.000196
speciesMitsuokella_multacida-0.0890.0001160.000223
speciesBifidobacterium_pseudocatenulatum0.0890.0001160.000223
speciesAlistipes_sp_HGB5-0.0890.0001260.000242
speciesRuminococcus_sp_JC3040.0880.0001280.000245
speciesCoprobacillus_sp_29_10.0840.0002940.00056
speciesRuminococcus_champanellensis-0.0830.0003180.000603
genusSubdoligranulum-0.0830.0003320.000627
speciesBacteroides_pectinophilus-0.0820.0003610.000679
speciesProteus_mirabilis0.0820.0003710.000695
speciesBifidobacterium_bifidum0.0820.0003790.000707
speciesBacteroides_finegoldii-0.0810.0004650.000864
speciesStreptococcus_lutetiensis0.080.0004990.000924
speciesAcidaminococcus_unclassified0.080.0005570.00103
speciesBacteroides_stercoris-0.080.0005690.00105
speciesCoprobacillus_sp_D60.0790.0006120.00112
speciesDialister_invisus0.0790.0006280.00114
speciesBacteroides_intestinalis-0.0790.0006350.00115
phylumProteobacteria0.0790.000660.00119
speciesBifidobacterium_breve0.0780.0006840.00123
speciesBacteroides_cellulosilyticus-0.0780.0006870.00123
speciesLactobacillus_amylovorus0.0780.0006990.00125
speciesMethanobrevibacter_smithii-0.0770.0008660.00154
speciesMegamonas_funiformis-0.0770.0009170.00163
genusDesulfovibrio-0.0760.0009690.00171
speciesParabacteroides_unclassified0.0750.001230.00217
speciesAlistipes_indistinctus-0.0740.001390.00244
speciesBacteroides_fragilis0.0730.00170.00297
genusMethanobrevibacter-0.0720.001730.00301
speciesEubacterium_biforme-0.0720.001860.00323
speciesClostridium_spiroforme0.0710.002010.00348
speciesRoseburia_intestinalis-0.0710.002130.00367
classMethanobacteria-0.0710.002230.0038
orderMethanobacteriales-0.0710.002230.0038
familyMethanobacteriaceae-0.0710.002230.0038
speciesBacteroides_coprophilus-0.070.002480.00421
speciesPorphyromonas_asaccharolytica0.070.00250.00423
speciesHoldemania_unclassified0.0650.005050.00851
speciesMegasphaera_micronuciformis0.0640.005480.0092
genusWeissella0.0640.005760.00961
speciesStreptococcus_phage_Sfi210.0640.005760.00961
speciesParabacteroides_sp_D13-0.0630.006020.00997
speciesAlistipes_unclassified0.0630.006020.00997
speciesBacteroides_dorei-0.0630.00610.0101
speciesLactobacillus_oris0.0620.006990.0115
familyBacteroidaceae-0.0620.007620.0124
genusBacteroides-0.0620.007620.0124
phylumEuryarchaeota-0.0610.0080.013
genusAcidaminococcus0.0610.008020.013
speciesLactococcus_phage_bIL670.0610.008230.0133
orderCaudovirales0.060.009410.0152
speciesBacteroides_nordii-0.060.009440.0152
genusButyricimonas-0.060.009570.0153
speciesButyricimonas_synergistica-0.060.009570.0153
speciesStreptococcus_pasteurianus0.0590.01020.0162
phylumVerrucomicrobia-0.0590.01110.0173
classVerrucomicrobiae-0.0590.01110.0173
orderVerrucomicrobiales-0.0590.01110.0173
familyVerrucomicrobiaceae-0.0590.01110.0173
genusAkkermansia-0.0590.01110.0173
speciesAkkermansia_muciniphila-0.0590.01110.0173
phylumViruses_noname0.0580.01220.0189
classViruses_noname0.0580.01220.0189
genusDialister0.0570.01290.0199
familySiphoviridae0.0570.0130.02
speciesWeissella_cibaria0.0570.01420.0217
speciesMegasphaera_elsdenii-0.0570.01420.0217
genusPorphyromonas0.0570.01440.0219
orderAeromonadales-0.0560.01460.0222
speciesCoprococcus_comes0.0560.01620.0245
genusSuccinatimonas-0.0550.01650.0248
speciesSuccinatimonas_hippei-0.0550.01650.0248
genusPhascolarctobacterium-0.0550.01680.0251
speciesPhascolarctobacterium_succinatutens-0.0550.01680.0251
speciesOscillibacter_sp_KLE_1728-0.0550.01750.0261
genusProteus0.0540.01860.0276
speciesBilophila_wadsworthia0.0530.02220.0328
familySuccinivibrionaceae-0.0530.02290.0338
speciesKlebsiella_oxytoca0.0520.02390.0351
speciesOscillibacter_sp_KLE_17450.0520.02460.0361
speciesBifidobacterium_angulatum-0.0510.0270.0395
speciesLactococcus_garvieae0.0510.02880.042
speciesLactococcus_phage_P6800.050.03030.044
familyStaphylococcaceae0.050.03140.0453
speciesPorphyromonas_uenonis0.050.03140.0453
speciesParabacteroides_distasonis-0.0490.0340.0489
genusSlackia0.0470.04020.0577
speciesLeuconostoc_lactis0.0470.04060.0581
speciesLactobacillus_crispatus0.0470.04210.06
speciesEubacterium_ventriosum-0.0460.04540.0645
speciesLactobacillus_vaginalis0.0460.04840.0686
orderViruses_noname0.0460.04890.0691
speciesKlebsiella_phage_KP36-0.0450.05030.0709
speciesBacteroides_faecis-0.0440.05440.0764
speciesEubacterium_cylindroides0.0440.0580.0812
speciesKlebsiella_unclassified0.0440.05830.0814
speciesBacteroides_ovatus-0.0430.06590.0918
orderPseudomonadales0.0420.06620.0919
speciesBacteroides_thetaiotaomicron-0.0420.07090.0981
speciesLactobacillus_acidophilus0.0420.07180.0991
genusBilophila0.0420.07250.0996
speciesBacteroides_massiliensis-0.0420.07260.0996
genusStaphylococcus0.040.08360.114
genusOlsenella0.040.08420.115
speciesBacteroides_coprocola-0.040.08620.117
speciesAcidaminococcus_fermentans-0.0390.09020.122
speciesKlebsiella_sp_MS_92_30.0390.09320.126
speciesBilophila_unclassified0.0390.09570.129
speciesLactobacillus_fermentum0.0380.1010.135
speciesMegamonas_hypermegale-0.0380.1010.135
speciesStreptococcus_infantarius0.0380.1020.136
speciesDesulfovibrio_desulfuricans-0.0370.1060.141
speciesRuminococcus_bromii0.0370.1140.152
speciesMethanobrevibacter_unclassified-0.0360.1240.164
genusCitrobacter0.0350.1260.166
speciesLactobacillus_salivarius0.0350.1260.166
speciesBacteroides_salanitronis-0.0350.1280.168
speciesCollinsella_unclassified0.0350.1310.172
genusPseudoflavonifractor-0.0350.1350.176
speciesPseudoflavonifractor_capillosus-0.0350.1350.176
genusTunalikevirus-0.0340.1370.178
speciesAcidaminococcus_intestini0.0340.140.181
speciesOdoribacter_unclassified0.0340.140.181
speciesButyrivibrio_unclassified-0.0330.1530.197
genusCatenibacterium-0.0330.1560.2
speciesCatenibacterium_mitsuokai-0.0330.1560.2
genusKlebsiella0.0330.1580.202
genusActinobacillus-0.0320.1610.205
speciesActinobacillus_unclassified-0.0320.1610.205
speciesOdoribacter_laneus0.0310.1770.225
speciesParabacteroides_goldsteinii-0.0310.1850.234
speciesBifidobacterium_catenulatum0.030.190.24
speciesCitrobacter_freundii0.030.1910.24
speciesDialister_succinatiphilus-0.030.1960.246
familyMyoviridae0.030.1980.248
phylumSynergistetes0.0290.210.26
classSynergistia0.0290.210.26
orderSynergistales0.0290.210.26
familySynergistaceae0.0290.210.26
speciesBacteroides_sp_4_3_47FAA-0.0290.2130.263
speciesCoprococcus_catus0.0280.2220.274
speciesParabacteroides_johnsonii0.0280.230.283
speciesLachnospiraceae_bacterium_7_1_58FAA0.0270.240.294
speciesLactobacillus_reuteri0.0270.2470.302
speciesLactococcus_phage_jm20.0270.2490.304
speciesWeissella_confusa0.0260.2530.308
speciesCollinsella_tanakaei0.0260.2540.308
speciesSutterella_parvirubra0.0260.2660.322
familyRuminococcaceae0.0250.2860.345
speciesMegamonas_rupellensis-0.0240.2950.355
speciesVeillonella_unclassified-0.0240.2980.358
genusEubacterium-0.0240.30.358
speciesPrevotella_buccae-0.0240.30.358
familyEubacteriaceae-0.0240.3060.365
genusC2likevirus0.0220.3440.409
speciesOscillibacter_unclassified-0.0220.3490.414
speciesBacteroides_salyersiae-0.0210.3550.42
speciesC2likevirus_unclassified0.0210.3580.422
speciesSlackia_piriformis0.0210.3710.437
speciesDorea_unclassified-0.020.3820.449
speciesLactococcus_phage_phi70.020.3870.452
speciesCitrobacter_unclassified0.020.3870.452
speciesEnterobacteria_phage_HK5440.020.3880.452
familyAcidaminococcaceae-0.020.3930.455
genusPyramidobacter0.020.3930.455
speciesPyramidobacter_piscolens0.020.3930.455
speciesParabacteroides_sp_20_30.0190.40.462
speciesBacteroides_barnesiae-0.0190.4040.465
speciesBacteroides_eggerthii-0.0190.4120.473
speciesBacteroides_sp_2_1_22-0.0190.4230.485
speciesBacteroides_oleiciplenus0.0180.4480.512
speciesVeillonella_atypica-0.0170.4560.52
familyVeillonellaceae0.0170.4590.521
speciesHaemophilus_paraphrohaemolyticus-0.0170.4590.521
genusTuricibacter-0.0170.4710.532
speciesTuricibacter_unclassified-0.0170.4710.532
familyCampylobacteraceae0.0160.4820.543
classEpsilonproteobacteria0.0160.4990.559
orderCampylobacterales0.0160.4990.559
speciesMegasphaera_unclassified-0.0150.5110.572
classDeltaproteobacteria0.0150.5250.583
orderDesulfovibrionales0.0150.5250.583
familyDesulfovibrionaceae0.0150.5250.583
speciesKlebsiella_pneumoniae0.0150.5290.586
genusCampylobacter0.0150.5310.587
familyOscillospiraceae-0.0140.5390.593
genusOscillibacter-0.0140.5390.593
speciesBacteroides_sp_1_1_6-0.0140.5420.595
speciesOlsenella_unclassified0.0140.5470.599
genusLambdalikevirus-0.0140.5580.61
genusMegasphaera0.0130.5630.614
speciesTuricibacter_sanguinis-0.0130.5860.637
genusCoprococcus-0.0120.6170.669
speciesAggregatibacter_segnis0.0110.6450.698
speciesRoseburia_unclassified0.010.6570.71
speciesEnterobacter_aerogenes0.010.6650.717
familyViruses_noname-0.010.6710.72
genusViruses_noname-0.010.6710.72
speciesPeptostreptococcaceae_noname_unclassified0.010.6810.729
speciesCampylobacter_concisus-0.0090.6970.744
speciesLactobacillus_sanfranciscensis0.0080.7150.762
speciesVeillonella_parvula0.0080.7330.779
genusMyoviridae_noname-0.0080.7370.782
speciesEnterobacter_cloacae-0.0070.7530.797
speciesMegamonas_unclassified-0.0070.7690.812
speciesAlistipes_sp_AP11-0.0070.7730.814
genusMegamonas-0.0060.7840.824
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0060.7910.83
speciesClostridium_perfringens0.0050.8160.854
genusRuminococcaceae_noname-0.0050.8230.858
speciesRuminococcaceae_bacterium_D16-0.0050.8230.858
speciesBacteroides_sp_3_1_19-0.0050.830.863
speciesLactococcus_phage_936_sensu_lato0.0050.8430.874
speciesVeillonella_dispar-0.0040.8620.892
familyPodoviridae0.0040.8710.9
genusEnterobacter-0.0040.8740.9
classNegativicutes0.0040.8770.9
orderSelenomonadales0.0040.8770.9
speciesHaemophilus_sputorum-0.0040.8790.9
speciesFusobacterium_mortiferum0.0030.8870.906
genusAnaerotruncus0.0030.8980.915
genusAcidaminococcaceae_unclassified0.0030.9140.93
genusAggregatibacter0.0020.920.934
genusMethanosphaera0.0020.9250.935
speciesMethanosphaera_stadtmanae0.0020.9250.935
speciesLactobacillus_mucosae-0.0020.9280.936
speciesBacteroides_fluxus-0.0020.9380.944
genusVeillonella-0.0010.9590.963
speciesBifidobacterium_adolescentis-0.0010.9630.965
speciesBacteroides_clarus0.00.9870.987
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.02604913945620.004272572842342.33236762059e-063851.28013
Type II diabetesChina1831850.01292517270630.003081944460290.0001676331822048922.94788
Ulcerative colitisSpain78660.005249162820610.004272572842340.0092394672374717935.91476
Type II diabetesDenmark752770.002931470330920.001224276210940.0225040394891545317.8746
ObesityDenmark1691230.001309961819170.001089965604580.119215585775811926.6976
Liver cirrhosisChina1201140.003251860227750.002178915350470.2698630918982049768.8535
Type II diabetesSweden53920.005092644668020.003190751143470.270348438318909130.7856
Colorectal cancerAustria64350.008319180481640.004179971290810.314224660111282043.3753
Rheumatoid arthritisChina127980.00278022202270.003924410395050.4883287830051741458.0718
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382