MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-05-06 00:38:00 PST
Job id & description: 1798, 3ahsdh
Query type: protein
Count queries & homologs: 1, 37
Min % identity & max e-value: 50%, 1e-10
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
Eggerthella_lenta3499079CompleteK00037COG1028ActinobacteriaEggerthella100.0100.0100.0
Eggerthella_lenta4183045Lack 5'-endK00037COG1028ActinobacteriaEggerthella86.49100.096.88
Eggerthella_lenta4682283Lack 5'-endK00037COG1028ActinobacteriaEggerthella77.99100.092.57
Eggerthella_lenta3481382CompleteK00037COG1028FirmicutesPseudoflavonifractor100.0100.069.62
Eggerthella_lenta3431236CompleteK00037COG1028unknownunknown100.0100.061.83
Eggerthella_lenta3432184CompleteK00037COG1028unknownunknown100.0100.062.98
Eggerthella_lenta3467381CompleteK00037COG1028unknownunknown100.0100.059.62
Eggerthella_lenta3202016CompleteK00037COG1028unknownunknown100.094.9361.83
Eggerthella_lenta3435695CompleteK00037COG1028unknownunknown100.0100.061.45
Eggerthella_lenta3114077Lack 5'-endK00037COG1028unknownunknown100.092.9161.45
Eggerthella_lenta3429673CompleteK00037COG1028unknownunknown100.0100.062.98
Eggerthella_lenta3259518Lack 5'-endK00037COG1028unknownunknown100.097.4460.15
Eggerthella_lenta3257799Lack 5'-endK00037COG1028unknownunknown100.095.9757.63
Eggerthella_lenta3371850CompleteK00037COG1028unknownunknown100.0100.059.02
Eggerthella_lenta3147041Lack 5'-endK00037COG1028unknownunknown100.093.5759.54
Eggerthella_lenta3443805CompleteK00037COG1028unknownunknown100.0100.059.92
Eggerthella_lenta3439090CompleteK00037COG1028unknownunknown100.0100.056.49
Eggerthella_lenta3434744CompleteK00037COG1028unknownunknown100.0100.056.49
Eggerthella_lenta3347627CompleteK00037COG1028unknownunknown100.0100.056.18
Eggerthella_lenta2916319Lack both endsK00037COG1028unknownunknown95.3784.7559.6
Eggerthella_lenta3412550CompleteK00037COG1028unknownunknown100.0100.054.37
Eggerthella_lenta3534915CompleteK00037COG1028unknownunknown99.2399.6154.09
Eggerthella_lenta3536893CompleteK00037COG1028Firmicutesunknown99.2399.6154.47
Eggerthella_lenta3115955CompleteK00037COG1028Firmicutesunknown99.2390.7853.7
Eggerthella_lenta3530815CompleteK00037COG1028unknownunknown99.61100.053.88
Eggerthella_lenta3338053CompleteK00037COG1028unknownunknown98.4694.7854.12
Eggerthella_lenta3599731CompleteK00037COG1028FirmicutesClostridium97.6899.653.75
Eggerthella_lenta3527619CompleteK00037COG1028unknownunknown99.2399.6153.31
Eggerthella_lenta3600094CompleteK00037COG1028FirmicutesClostridium97.6899.653.36
Eggerthella_lenta3604390CompleteK00037COG1028FirmicutesClostridium97.6899.653.36
Eggerthella_lenta3241408CompleteK00037COG1028FirmicutesClostridium99.2393.4352.53
Eggerthella_lenta3738127Lack 5'-endK00037COG1028Firmicutesunknown94.9899.5952.85
Eggerthella_lenta3537019CompleteK00037COG1028FirmicutesClostridium99.2399.6152.92
Eggerthella_lenta3510990CompleteK00037COG1028unknownunknown93.8293.851.44
Eggerthella_lenta4951471Lack 3'-endK00037COG1028unknownunknown72.97100.060.42
Eggerthella_lenta4685860Lack 5'-endK00037COG1028unknownunknown76.83100.059.41
Eggerthella_lenta4351280Lack both endsK00037COG1028unknownunknown81.8599.5454.63
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEubacterium_eligens0.6013.05e-1841.44e-181
genusRoseburia0.3275.83e-481.38e-45
genusEubacterium0.2836.93e-368.72e-34
familyEubacteriaceae0.2837.39e-368.72e-34
speciesRoseburia_hominis0.262.88e-302.72e-28
genusFaecalibacterium0.2571.07e-297.21e-28
speciesFaecalibacterium_prausnitzii0.2571.07e-297.21e-28
speciesRoseburia_inulinivorans0.2322.4e-241.42e-22
classDeltaproteobacteria0.2044.21e-191.74e-17
orderDesulfovibrionales0.2044.21e-191.74e-17
familyDesulfovibrionaceae0.2044.21e-191.74e-17
speciesClostridium_citroniae0.2044.42e-191.74e-17
genusHoldemania0.2029.7e-193.52e-17
genusBilophila0.1917.88e-172.35e-15
classClostridia0.1917.97e-172.35e-15
orderClostridiales0.1917.97e-172.35e-15
speciesClostridium_asparagiforme0.191.37e-163.8e-15
speciesBilophila_unclassified0.1891.64e-164.3e-15
speciesBilophila_wadsworthia0.1882.35e-165.84e-15
phylumActinobacteria-0.1719.63e-142.16e-12
classActinobacteria-0.1719.63e-142.16e-12
orderBifidobacteriales-0.171.22e-132.5e-12
familyBifidobacteriaceae-0.171.22e-132.5e-12
genusBifidobacterium-0.1691.61e-133.17e-12
orderPasteurellales0.1673.39e-136.15e-12
familyPasteurellaceae0.1673.39e-136.15e-12
genusHaemophilus0.1664.89e-138.55e-12
speciesHaemophilus_parainfluenzae0.1648.67e-131.46e-11
speciesBacteroides_intestinalis0.1649.07e-131.48e-11
speciesBacteroides_cellulosilyticus0.1631.13e-121.78e-11
speciesVeillonella_unclassified0.1612.51e-123.82e-11
genusVeillonella0.1594.26e-126.28e-11
genusLachnospiraceae_noname0.1587.27e-121.04e-10
genusOdoribacter0.1578.71e-121.21e-10
speciesBacteroides_thetaiotaomicron0.1524.1e-115.53e-10
speciesOdoribacter_splanchnicus0.1499.24e-111.21e-09
speciesLachnospiraceae_bacterium_1_1_57FAA0.1453.02e-103.85e-09
speciesAlistipes_senegalensis0.1418.64e-101.07e-08
speciesBacteroides_massiliensis0.1418.95e-101.08e-08
genusCollinsella-0.1419.78e-101.15e-08
familyLachnospiraceae0.141.09e-091.25e-08
speciesHoldemania_filiformis0.1391.43e-091.61e-08
speciesBacteroides_oleiciplenus0.1391.51e-091.66e-08
speciesVeillonella_parvula0.1391.58e-091.69e-08
speciesBacteroides_salyersiae0.1391.62e-091.7e-08
speciesClostridium_hathewayi0.1391.66e-091.7e-08
speciesClostridiales_bacterium_1_7_47FAA0.1382.26e-092.27e-08
genusBarnesiella0.1372.57e-092.48e-08
speciesBarnesiella_intestinihominis0.1372.57e-092.48e-08
speciesBacteroides_nordii0.1364.03e-093.8e-08
speciesRoseburia_intestinalis0.1345.78e-095.35e-08
speciesBifidobacterium_adolescentis-0.1346.61e-096e-08
genusClostridiales_noname0.1337.07e-096.3e-08
speciesAlistipes_shahii0.1321.03e-089e-08
speciesClostridium_bolteae0.131.91e-081.64e-07
speciesAlistipes_finegoldii0.1282.56e-082.16e-07
speciesCollinsella_aerofaciens-0.1282.71e-082.24e-07
genusButyricimonas0.1273.43e-082.74e-07
speciesButyricimonas_synergistica0.1273.43e-082.74e-07
speciesBifidobacterium_bifidum-0.1265.12e-084.03e-07
speciesClostridium_symbiosum0.1247.11e-085.5e-07
familyRikenellaceae0.122.12e-071.59e-06
genusAlistipes0.122.12e-071.59e-06
speciesButyrivibrio_unclassified0.1192.55e-071.87e-06
genusParasutterella0.1192.62e-071.87e-06
speciesParasutterella_excrementihominis0.1192.62e-071.87e-06
speciesRuminococcus_lactaris0.1192.69e-071.9e-06
orderCoriobacteriales-0.1182.89e-071.94e-06
familyCoriobacteriaceae-0.1182.89e-071.94e-06
speciesBacteroides_dorei0.1182.9e-071.94e-06
speciesHoldemania_unclassified0.1182.92e-071.94e-06
phylumFirmicutes0.1183.28e-072.15e-06
speciesParabacteroides_johnsonii0.1183.35e-072.17e-06
speciesBacteroides_clarus0.1173.68e-072.35e-06
genusAnaerotruncus0.1173.81e-072.4e-06
speciesBacteroides_xylanisolvens0.1174.16e-072.58e-06
familyActinomycetaceae-0.1174.35e-072.67e-06
orderBurkholderiales0.1164.52e-072.74e-06
speciesVeillonella_atypica0.1164.88e-072.92e-06
speciesParabacteroides_goldsteinii0.1155.58e-073.26e-06
genusActinomyces-0.1155.59e-073.26e-06
familySutterellaceae0.1148.14e-074.69e-06
classBetaproteobacteria0.1139.13e-075.19e-06
speciesAlistipes_onderdonkii0.1131.05e-065.9e-06
speciesBifidobacterium_longum-0.1121.2e-066.66e-06
speciesBacteroides_faecis0.1092.38e-061.31e-05
genusButyrivibrio0.1063.97e-062.15e-05
speciesRuminococcus_callidus0.1055.44e-062.92e-05
speciesBacteroides_caccae0.1046.4e-063.39e-05
familyRuminococcaceae0.1046.97e-063.66e-05
familyOscillospiraceae0.1047.13e-063.66e-05
genusOscillibacter0.1047.13e-063.66e-05
speciesBacteroides_coprocola0.1037.54e-063.83e-05
familyBurkholderiales_noname0.1038.56e-064.3e-05
genusBurkholderiales_noname0.1021.02e-055.02e-05
speciesBurkholderiales_bacterium_1_1_470.1021.02e-055.02e-05
speciesVeillonella_dispar0.11.4e-056.81e-05
familyClostridiales_noname0.11.48e-057.13e-05
speciesBacteroides_uniformis0.11.57e-057.38e-05
familyBacteroidaceae0.11.58e-057.38e-05
genusBacteroides0.11.58e-057.38e-05
speciesAlistipes_putredinis0.0991.64e-057.59e-05
speciesAnaerotruncus_colihominis0.0991.84e-058.43e-05
speciesLachnospiraceae_bacterium_3_1_46FAA0.0982.13e-059.67e-05
speciesBacteroides_finegoldii0.0982.39e-050.000107
speciesParaprevotella_xylaniphila0.0972.47e-050.00011
speciesStreptococcus_salivarius0.0972.54e-050.000112
speciesAnaerotruncus_unclassified0.0972.56e-050.000112
genusParaprevotella0.0972.73e-050.000118
speciesParaprevotella_unclassified0.0972.87e-050.000123
speciesOscillibacter_unclassified0.0972.9e-050.000123
speciesLactobacillus_rhamnosus-0.0953.72e-050.000157
genusDesulfovibrio0.0944.28e-050.000179
speciesBacteroides_vulgatus0.0944.52e-050.000187
speciesBifidobacterium_catenulatum-0.0917.7e-050.000316
familyClostridiaceae0.0918.6e-050.00035
genusClostridium0.098.95e-050.000361
speciesCoprococcus_eutactus0.0890.0001150.00046
speciesParaprevotella_clara0.0880.0001410.000559
speciesEnterobacter_cloacae0.0880.0001460.000574
speciesBacteroides_plebeius0.0870.0001740.000679
speciesBacteroides_eggerthii0.0860.0002050.000793
speciesBacteroides_ovatus0.0850.0002460.000944
speciesLactobacillus_gasseri-0.0840.0002640.001
speciesBacteroides_stercoris0.0840.0002880.00109
speciesLachnospiraceae_bacterium_5_1_63FAA0.0830.000320.0012
genusEnterobacter0.0830.0003460.00129
phylumProteobacteria0.0820.000370.00136
speciesEubacterium_ventriosum0.0820.0004110.0015
genusCoprobacter0.0810.0004560.00164
speciesCoprobacter_fastidiosus0.0810.0004560.00164
familyPropionibacteriaceae-0.080.0005360.00192
speciesClostridium_leptum-0.0790.0006130.00218
speciesAcidaminococcus_unclassified-0.0780.00070.00247
genusFlavonifractor0.0780.0007270.00252
speciesFlavonifractor_plautii0.0780.0007270.00252
speciesErysipelotrichaceae_bacterium_6_1_45-0.0780.0007950.00274
speciesParabacteroides_distasonis0.0770.0008640.00296
genusTunalikevirus0.0760.001050.00357
speciesLactobacillus_casei_paracasei-0.0750.001250.00421
orderActinomycetales-0.0740.001310.00439
speciesDesulfovibrio_desulfuricans0.0740.001360.00452
familyLactobacillaceae-0.0730.001580.00522
familyPorphyromonadaceae0.0730.00160.00524
genusOlsenella-0.0730.001650.00537
genusErysipelotrichaceae_noname-0.0730.001670.0054
genusClostridiaceae_noname0.0720.001810.00577
speciesClostridiaceae_bacterium_JC1180.0720.001810.00577
speciesKlebsiella_pneumoniae0.0720.001830.0058
familyPrevotellaceae0.0720.001910.00601
familyBacteroidales_noname0.0710.002170.00665
genusBacteroidales_noname0.0710.002170.00665
speciesLactococcus_lactis-0.0710.002170.00665
speciesBacteroidales_bacterium_ph80.0710.002170.00665
genusPropionibacterium-0.070.00230.007
genusLactococcus-0.070.002350.00711
genusKlebsiella0.070.002480.00746
orderPseudomonadales-0.070.00250.00747
genusLactobacillus-0.070.002570.00763
speciesCoprococcus_sp_ART55_10.0690.002780.0082
speciesBlautia_hydrogenotrophica-0.0680.003190.00935
speciesKlebsiella_phage_KP360.0680.003250.00947
genusAggregatibacter0.0680.003310.00958
genusSubdoligranulum0.0680.003440.0099
speciesEubacterium_siraeum0.0680.003460.0099
speciesMegasphaera_unclassified-0.0670.003590.0102
speciesLactobacillus_amylovorus-0.0670.00360.0102
speciesSubdoligranulum_unclassified0.0670.003850.0108
genusCoprococcus0.0660.004310.012
genusStreptococcus0.0660.004340.012
genusMegasphaera-0.0650.005090.014
speciesParvimonas_unclassified-0.0650.005110.014
genusParvimonas-0.0650.005150.0141
speciesBacteroides_sp_1_1_6-0.0640.005720.0155
speciesStreptococcus_mitis_oralis_pneumoniae-0.0630.006680.018
speciesHoldemania_sp_AP20.0630.006830.0182
speciesOlsenella_unclassified-0.0630.006840.0182
familyEnterococcaceae-0.0620.007450.0198
speciesBifidobacterium_breve-0.0620.007680.0203
speciesPrevotella_stercorea0.0610.00850.0223
genusCatenibacterium-0.0610.008640.0224
speciesCatenibacterium_mitsuokai-0.0610.008640.0224
speciesLachnospiraceae_bacterium_7_1_58FAA0.0610.008860.0229
speciesRuminococcus_sp_JC304-0.060.009160.0235
speciesClostridium_sp_L2_500.060.009540.0243
genusActinobacillus0.060.009650.0244
speciesActinobacillus_unclassified0.060.009650.0244
genusAcidaminococcus-0.0590.01020.0256
familyStreptococcaceae0.0590.01050.0262
genusEnterococcus-0.0590.01110.0274
speciesHaemophilus_sputorum0.0590.01110.0274
speciesStreptococcus_sanguinis-0.0580.01140.028
speciesOscillibacter_sp_KLE_1728-0.0580.01160.0284
speciesDorea_longicatena-0.0570.01290.0314
speciesEubacterium_dolichum-0.0570.0130.0315
speciesMegamonas_funiformis0.0570.01310.0315
speciesStreptococcus_australis0.0570.01360.0323
speciesKlebsiella_unclassified0.0570.01360.0323
speciesEnterococcus_faecium-0.0570.01360.0323
familySiphoviridae-0.0570.01380.0326
speciesDesulfovibrio_piger0.0570.01440.0338
genusSiphoviridae_noname-0.0560.01460.0341
speciesParabacteroides_unclassified0.0560.01580.0367
familyClostridiales_Family_XI_Incertae_Sedis-0.0550.01710.0396
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0540.01930.0444
speciesAlistipes_indistinctus0.0540.020.0458
speciesErysipelotrichaceae_bacterium_3_1_530.0540.02020.0461
speciesPorphyromonas_asaccharolytica-0.0510.0280.0635
genusRuminococcaceae_noname0.050.02970.0667
speciesRuminococcaceae_bacterium_D160.050.02970.0667
speciesRuminococcus_obeum0.050.02980.0667
familyFusobacteriaceae0.050.03050.0679
genusSutterellaceae_unclassified0.050.03090.0685
genusPorphyromonas-0.050.03160.0697
speciesRuminococcus_gnavus-0.050.03180.0698
phylumFusobacteria0.0490.03310.0717
classFusobacteriia0.0490.03310.0717
orderFusobacteriales0.0490.03310.0717
speciesMegamonas_unclassified0.0490.03430.0739
genusMegamonas0.0480.0360.0772
genusLeuconostoc-0.0480.03720.0794
speciesLactobacillus_mucosae-0.0480.03880.0825
speciesFusobacterium_mortiferum0.0470.04020.0851
genusDorea-0.0470.04070.0858
familyViruses_noname0.0460.04560.0952
genusViruses_noname0.0460.04560.0952
genusFusobacterium0.0460.04810.1
orderCaudovirales-0.0450.05260.109
speciesEnterococcus_faecalis-0.0450.05350.11
speciesStreptococcus_mutans-0.0440.0580.119
speciesClostridium_spiroforme-0.0440.05850.12
speciesLactobacillus_delbrueckii-0.0440.05880.12
speciesDialister_invisus-0.0430.06110.124
speciesKlebsiella_oxytoca-0.0430.06230.126
speciesRuminococcus_sp_5_1_39BFAA-0.0430.06420.129
classGammaproteobacteria0.0430.06490.13
speciesEubacterium_limosum-0.0430.06560.131
speciesBacteroides_fragilis0.0420.0670.133
speciesBifidobacterium_dentium-0.0420.06720.133
familyStaphylococcaceae0.0420.07070.139
speciesLactobacillus_sanfranciscensis-0.0410.07710.15
speciesAcidaminococcus_intestini-0.0410.07710.15
familyBacillales_noname-0.0410.07980.154
genusGemella-0.0410.07980.154
speciesMegamonas_rupellensis0.040.08130.157
speciesBacteroides_coprophilus0.040.08320.16
speciesEubacterium_cylindroides-0.0390.09060.173
speciesErysipelotrichaceae_bacterium_21_3-0.0390.09280.177
genusSolobacterium-0.0390.09470.179
speciesSolobacterium_moorei-0.0390.09470.179
genusAdlercreutzia0.0380.09610.18
speciesAdlercreutzia_equolifaciens0.0380.09610.18
speciesKlebsiella_sp_MS_92_3-0.0380.0970.181
speciesClostridium_clostridioforme0.0380.09740.181
genusDialister-0.0380.09890.183
speciesEubacterium_rectale0.0380.1020.188
speciesLactococcus_phage_P680-0.0370.1070.197
genusPrevotella0.0370.1080.197
speciesStreptococcus_anginosus-0.0370.1080.197
genusPeptostreptococcus-0.0370.110.199
speciesMegasphaera_elsdenii-0.0370.110.199
genusStaphylococcus0.0370.1120.201
genusParabacteroides0.0370.1120.201
speciesPrevotella_copri0.0360.1170.209
speciesStreptococcus_parasanguinis0.0360.1230.219
speciesMitsuokella_multacida-0.0350.1260.224
speciesCoprococcus_catus0.0350.1330.235
speciesC2likevirus_unclassified-0.0340.1370.241
speciesRuminococcus_torques0.0340.1390.244
speciesBacteroides_sp_4_3_47FAA-0.0340.140.245
familyLeuconostocaceae-0.0340.1420.247
familyOxalobacteraceae0.0340.1460.25
genusC2likevirus-0.0340.1460.25
speciesLactobacillus_acidophilus-0.0340.1460.25
speciesBacteroides_salanitronis-0.0340.1460.25
speciesPrevotella_buccae0.0340.1460.25
genusPantoea-0.0320.1660.282
speciesPantoea_unclassified-0.0320.1660.282
speciesStreptococcus_gordonii-0.0320.170.288
speciesCoprobacillus_sp_29_1-0.0320.1720.29
speciesAlistipes_unclassified-0.0310.1750.294
speciesCollinsella_unclassified-0.0310.1780.298
speciesRoseburia_unclassified-0.0310.1790.298
genusOxalobacter0.0310.180.298
speciesOxalobacter_formigenes0.0310.180.298
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0310.1810.298
genusGordonibacter0.0310.1820.298
speciesGordonibacter_pamelaeae0.0310.1820.298
orderAeromonadales0.0310.1830.298
speciesClostridium_sp_KLE_17550.0310.1830.298
speciesPeptostreptococcus_stomatis-0.0310.1840.298
genusPyramidobacter0.030.1920.309
speciesPyramidobacter_piscolens0.030.1920.309
genusMethanosphaera-0.030.1950.312
speciesMethanosphaera_stadtmanae-0.030.1950.312
speciesStreptococcus_thermophilus-0.030.1960.313
speciesBifidobacterium_animalis-0.030.1990.316
speciesEubacterium_biforme-0.030.2010.318
speciesParabacteroides_sp_20_30.0290.2040.322
speciesLactobacillus_oris-0.0290.2070.326
speciesSutterella_parvirubra0.0290.2130.333
speciesEubacterium_ramulus0.0290.2130.333
speciesFusobacterium_varium0.0280.2190.341
speciesHaemophilus_paraphrohaemolyticus0.0280.2210.341
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0280.2210.341
speciesTuricibacter_unclassified0.0280.2210.341
speciesLactobacillus_ruminis-0.0280.2250.346
phylumViruses_noname-0.0280.2310.351
classViruses_noname-0.0280.2310.351
speciesLactobacillus_vaginalis-0.0280.2310.351
speciesParabacteroides_merdae0.0280.2310.351
speciesAlistipes_sp_AP11-0.0280.2330.352
speciesRuminococcus_bromii0.0270.2380.359
speciesPeptostreptococcaceae_noname_unclassified0.0270.2450.368
speciesGemella_morbillorum-0.0270.2470.37
genusCitrobacter0.0270.2490.372
genusSlackia-0.0260.2590.386
speciesPropionibacterium_freudenreichii-0.0250.2720.404
speciesAggregatibacter_segnis0.0250.2730.404
familyAcidaminococcaceae-0.0250.2780.409
genusMitsuokella0.0250.2780.409
orderViruses_noname0.0250.2790.409
speciesCitrobacter_freundii0.0250.2830.414
speciesLactococcus_phage_bIL670.0250.2860.417
speciesLactococcus_phage_936_sensu_lato0.0250.2880.418
speciesLactococcus_phage_jm20.0240.3010.436
speciesLactobacillus_reuteri0.0230.310.447
speciesDialister_succinatiphilus0.0230.3210.462
speciesCitrobacter_unclassified0.0230.3270.469
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.0220.3330.476
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0220.3370.481
speciesOdoribacter_unclassified0.0220.3420.486
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0220.3470.492
speciesCoriobacteriaceae_bacterium_phI-0.0220.3490.493
speciesButyrivibrio_crossotus0.0210.3590.504
speciesMethanobrevibacter_smithii-0.0210.3590.504
genusAcidaminococcaceae_unclassified-0.0210.360.504
genusMorganella-0.020.3760.522
speciesMorganella_morganii-0.020.3760.522
speciesLachnospiraceae_bacterium_2_1_58FAA0.020.3760.522
speciesProteus_mirabilis0.020.390.54
classMethanobacteria-0.0190.4040.554
orderMethanobacteriales-0.0190.4040.554
familyMethanobacteriaceae-0.0190.4040.554
familySuccinivibrionaceae0.0190.4050.554
genusMethanobrevibacter-0.0190.4090.558
speciesSlackia_piriformis-0.0190.4120.56
genusTuricibacter0.0190.4130.56
speciesMitsuokella_unclassified0.0190.4150.561
genusButyricicoccus-0.0190.4170.561
speciesButyricicoccus_pullicaecorum-0.0190.4170.561
speciesMegamonas_hypermegale0.0190.4190.562
genusCoriobacteriaceae_noname-0.0180.4250.568
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0180.4370.583
speciesCoprobacillus_sp_D6-0.0180.440.585
speciesRuminococcus_champanellensis-0.0180.4470.593
speciesClostridium_ramosum-0.0170.4560.603
classErysipelotrichia-0.0170.4660.611
orderErysipelotrichales-0.0170.4660.611
familyErysipelotrichaceae-0.0170.4660.611
genusEggerthella0.0160.480.624
genusBlautia-0.0160.480.624
phylumSynergistetes0.0160.4850.624
classSynergistia0.0160.4850.624
orderSynergistales0.0160.4850.624
familySynergistaceae0.0160.4850.624
speciesStreptococcus_lutetiensis-0.0160.4860.624
speciesOscillibacter_sp_KLE_17450.0160.4880.624
orderEnterobacteriales0.0160.4890.624
familyEnterobacteriaceae0.0160.4890.624
speciesStreptococcus_pasteurianus-0.0160.4930.627
genusPseudoflavonifractor0.0150.5040.637
speciesPseudoflavonifractor_capillosus0.0150.5040.637
speciesLachnospiraceae_bacterium_8_1_57FAA0.0150.5050.637
orderBacillales-0.0150.5130.646
speciesLactococcus_garvieae-0.0150.5170.649
speciesCoprobacillus_unclassified0.0150.5290.662
genusSuccinatimonas0.0140.5440.676
speciesSuccinatimonas_hippei0.0140.5440.676
classBacilli0.0140.5450.676
speciesMethanobrevibacter_unclassified-0.0140.5460.676
genusLambdalikevirus0.0140.5520.68
speciesAlistipes_sp_HGB5-0.0140.5520.68
speciesTuricibacter_sanguinis0.0140.5550.682
speciesStreptococcus_vestibularis0.0130.560.687
speciesEggerthella_unclassified0.0130.5650.691
speciesClostridium_sp_ATCC_BAA_4420.0130.5760.703
speciesBacteroides_sp_3_1_190.0130.5780.703
speciesParabacteroides_sp_D13-0.0130.5790.703
speciesEggerthella_sp_1_3_56FAA-0.0120.5920.716
speciesLeuconostoc_lactis0.0120.5930.716
speciesPorphyromonas_uenonis-0.0120.5980.72
speciesStreptococcus_phage_Sfi210.0120.6050.727
classEpsilonproteobacteria-0.0110.6220.743
orderCampylobacterales-0.0110.6220.743
orderLactobacillales0.0110.6390.762
speciesLachnospiraceae_bacterium_6_1_63FAA0.0110.6460.768
speciesEggerthella_lenta-0.010.650.77
speciesEnterobacter_aerogenes-0.010.6510.77
classNegativicutes-0.010.6570.773
orderSelenomonadales-0.010.6570.773
speciesLactobacillus_crispatus-0.010.6620.775
speciesAcidaminococcus_fermentans0.010.6620.775
speciesEnterobacteria_phage_HK5440.010.6680.78
speciesWeissella_cibaria-0.010.6780.79
phylumEuryarchaeota-0.0090.6930.806
speciesEubacterium_hallii0.0090.6980.809
speciesEscherichia_unclassified0.0090.70.81
speciesBacteroides_barnesiae0.0090.7070.816
speciesAnaerostipes_unclassified0.0080.7350.846
speciesBacteroides_sp_2_1_220.0080.7390.849
familyCampylobacteraceae-0.0080.7430.851
speciesMegasphaera_micronuciformis0.0070.7530.86
speciesDorea_formicigenerans-0.0070.7550.86
familyMicrococcaceae-0.0070.7560.86
genusPeptoniphilus0.0070.7630.866
genusPeptostreptococcaceae_noname-0.0070.7670.868
genusRothia-0.0070.770.868
speciesBifidobacterium_pseudocatenulatum-0.0070.7710.868
speciesBacteroides_pectinophilus0.0070.7730.868
speciesLactococcus_phage_phi70.0070.7740.868
speciesWeissella_confusa0.0060.7790.871
genusCampylobacter-0.0060.7830.873
speciesCoprococcus_comes0.0060.7840.873
genusWeissella-0.0060.7860.873
genusAnaerostipes0.0060.7920.878
speciesFusobacterium_nucleatum-0.0060.80.882
speciesBlautia_producta0.0060.8020.882
speciesLactobacillus_salivarius-0.0060.8020.882
familyVeillonellaceae0.0060.8040.883
genusRuminococcus0.0050.8190.896
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0050.820.896
speciesLactobacillus_plantarum0.0050.8220.896
genusEscherichia-0.0050.8290.901
familyPeptostreptococcaceae-0.0050.830.901
speciesEscherichia_coli-0.0050.8390.907
speciesCampylobacter_concisus0.0050.8420.907
speciesRothia_mucilaginosa0.0050.8420.907
speciesFusobacterium_ulcerans-0.0040.8540.916
speciesBifidobacterium_angulatum-0.0040.8560.916
speciesCollinsella_tanakaei-0.0040.8560.916
genusSutterella0.0040.860.918
familyMyoviridae0.0040.8680.925
speciesSutterella_wadsworthensis-0.0040.8750.927
speciesClostridium_perfringens0.0040.8760.927
speciesClostridium_bartlettii-0.0040.8760.927
familyPodoviridae-0.0030.8850.934
genusProteus0.0030.8870.935
phylumBacteroidetes0.0030.8950.938
classBacteroidia0.0030.8960.938
orderBacteroidales0.0030.8960.938
speciesCollinsella_intestinalis-0.0030.8980.938
speciesClostridium_nexile-0.0030.90.938
speciesEubacterium_sp_3_1_310.0030.9030.939
genusMyoviridae_noname0.0020.9150.947
speciesOdoribacter_laneus0.0020.9150.947
genusCoprobacillus-0.0020.9190.947
speciesAnaerostipes_hadrus-0.0020.9190.947
speciesStreptococcus_infantarius-0.0020.9210.947
speciesDorea_unclassified0.0020.9370.961
speciesBacteroides_fluxus0.0020.9420.963
genusPhascolarctobacterium-0.0010.9530.963
speciesPeptostreptococcus_anaerobius0.0010.9530.963
speciesPhascolarctobacterium_succinatutens-0.0010.9530.963
phylumVerrucomicrobia0.0010.9590.963
classVerrucomicrobiae0.0010.9590.963
orderVerrucomicrobiales0.0010.9590.963
familyVerrucomicrobiaceae0.0010.9590.963
genusAkkermansia0.0010.9590.963
speciesAkkermansia_muciniphila0.0010.9590.963
speciesPrevotella_bivia-0.0010.9730.975
speciesLactobacillus_fermentum0.00.9990.999
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Ulcerative colitisSpain78660.03216002108920.0244419449090.019248179040327529.07831
Rheumatoid arthritisChina127980.02957665901350.03370203411340.104709930075546418.2212
ObesityDenmark1691230.02703687158730.02876040479660.2205159024191173838.5979
Liver cirrhosisChina1201140.04749383409970.04402625389540.2791442161672063369.3104
Type II diabetesChina1831850.03737736234920.03264641325730.4350048648421959964.7708
Type II diabetesSweden53920.02215318465210.01832287028640.4990560712991612354.5987
Colorectal cancerAustria64350.01710851638640.01811402835860.5606472309981968366.5956
Type II diabetesDenmark752770.02808360779730.02785028862670.7792800482312636986.4359
Crohns diseaseSpain17660.02555596269620.0244419449090.7822004821562746791.3283
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382