MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-05-07 21:41:13 PST
Job id & description: 1802, speG
Query type: protein
Count queries & homologs: 1, 10
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
SpeG2036809Lack 5'-endK00657NOG87366ActinobacteriaBifidobacterium100.098.89100.0
SpeG1963860CompleteK00657COG1670ActinobacteriaBifidobacterium99.72100.075.54
SpeG1963447CompleteK00657COG1670ActinobacteriaBifidobacterium99.72100.075.27
SpeG2074476CompleteK00657COG1670ActinobacteriaBifidobacterium99.72100.073.48
SpeG2147161CompleteK00657COG1670ActinobacteriaBifidobacterium94.196.8673.75
SpeG2102504CompleteK00657COG1670ActinobacteriaBifidobacterium95.7996.3368.33
SpeG2175678CompleteK00657COG1670ActinobacteriaBifidobacterium99.4499.7167.23
SpeG2180868CompleteunknownCOG1670ActinobacteriaBifidobacterium94.3895.3970.03
SpeG1620631CompleteK00657COG1670unknownunknown94.191.7962.6
SpeG2062369CompleteK00657COG1670ActinobacteriaBifidobacterium93.2689.3959.94
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumActinobacteria0.8920.00.0
classActinobacteria0.8920.00.0
orderBifidobacteriales0.9640.00.0
familyBifidobacteriaceae0.9640.00.0
genusBifidobacterium0.9650.00.0
speciesBifidobacterium_longum0.7740.00.0
speciesBifidobacterium_adolescentis0.5393.51e-1412.37e-139
orderCoriobacteriales0.5367.37e-1403.87e-138
familyCoriobacteriaceae0.5367.37e-1403.87e-138
phylumBacteroidetes-0.4529.98e-954.05e-93
classBacteroidia-0.4521.03e-944.05e-93
orderBacteroidales-0.4521.03e-944.05e-93
genusCollinsella0.4089.48e-763.44e-74
speciesCollinsella_aerofaciens0.3891.46e-684.92e-67
speciesBifidobacterium_bifidum0.3856.07e-671.91e-65
speciesEubacterium_hallii0.3773.81e-641.12e-62
speciesBifidobacterium_pseudocatenulatum0.3766.26e-641.74e-62
orderLactobacillales0.3744.3e-631.13e-61
classBacilli0.3714.69e-621.17e-60
genusDorea0.3692.79e-616.58e-60
speciesBifidobacterium_catenulatum0.3625.36e-591.2e-57
familyLactobacillaceae0.3491.57e-543.37e-53
speciesRuminococcus_obeum0.3467.7e-541.58e-52
genusLactobacillus0.3439.47e-531.86e-51
speciesAnaerostipes_hadrus0.3421.88e-523.55e-51
genusAnaerostipes0.3413.61e-526.55e-51
speciesRuminococcus_sp_5_1_39BFAA0.3414.25e-527.43e-51
genusRuminococcus0.3374.87e-518.21e-50
speciesLachnospiraceae_bacterium_5_1_63FAA0.3361.02e-501.66e-49
familyBacteroidaceae-0.3322.34e-493.56e-48
genusBacteroides-0.3322.34e-493.56e-48
speciesDorea_longicatena0.3191.83e-452.7e-44
familyStreptococcaceae0.3114.01e-435.74e-42
genusStreptococcus0.315.8e-438.05e-42
speciesDorea_formicigenerans0.3066.1e-428.23e-41
familyActinomycetaceae0.3069.18e-421.2e-40
genusActinomyces0.3035.46e-416.97e-40
phylumFirmicutes0.3021.32e-401.64e-39
speciesCoprococcus_comes0.2772.29e-342.77e-33
familyRuminococcaceae0.2772.41e-342.84e-33
speciesStreptococcus_salivarius0.2692.65e-323.05e-31
speciesStreptococcus_thermophilus0.2675.41e-326.08e-31
speciesStreptococcus_sanguinis0.2661.45e-311.59e-30
genusOlsenella0.2643.66e-313.93e-30
genusGordonibacter0.2636.04e-316.2e-30
speciesGordonibacter_pamelaeae0.2636.04e-316.2e-30
speciesBifidobacterium_dentium0.2628.65e-318.69e-30
speciesEggerthella_lenta0.2561.91e-291.88e-28
genusCoprococcus0.2521.98e-281.91e-27
genusAdlercreutzia0.2513.37e-283.12e-27
speciesAdlercreutzia_equolifaciens0.2513.37e-283.12e-27
speciesCoprococcus_catus0.256e-285.45e-27
genusBlautia0.2497.6e-286.77e-27
classClostridia0.2491e-278.58e-27
orderClostridiales0.2491e-278.58e-27
speciesOlsenella_unclassified0.2448.62e-277.27e-26
speciesClostridium_bartlettii0.2441.18e-269.77e-26
orderActinomycetales0.2441.2e-269.77e-26
genusParabacteroides-0.2372.67e-252.14e-24
familyPeptostreptococcaceae0.2363.5e-252.75e-24
genusSolobacterium0.236.04e-244.6e-23
speciesSolobacterium_moorei0.236.04e-244.6e-23
familyPorphyromonadaceae-0.2273.46e-232.59e-22
genusPeptostreptococcaceae_noname0.2255.58e-234.12e-22
genusOdoribacter-0.2256.48e-234.71e-22
speciesStreptococcus_parasanguinis0.2222.89e-222.07e-21
familyBacillales_noname0.226.88e-224.78e-21
genusGemella0.226.88e-224.78e-21
orderBacillales0.2181.26e-218.62e-21
speciesBacteroides_thetaiotaomicron-0.2181.5e-211.01e-20
genusEggerthella0.2172.58e-211.72e-20
speciesOdoribacter_splanchnicus-0.2163.04e-211.99e-20
speciesRuminococcus_bromii0.2148.41e-215.44e-20
speciesBacteroides_xylanisolvens-0.2071.46e-199.31e-19
speciesEggerthella_unclassified0.2011.57e-189.88e-18
speciesBifidobacterium_animalis0.1961.14e-177.08e-17
speciesStreptococcus_vestibularis0.1934.17e-172.56e-16
speciesClostridium_leptum0.1924.77e-172.89e-16
speciesLactobacillus_delbrueckii0.1916.91e-174.13e-16
familyLachnospiraceae0.191.03e-166.08e-16
speciesStreptococcus_anginosus0.191.37e-167.98e-16
speciesStreptococcus_gordonii0.1891.59e-169.15e-16
genusEnterococcus0.1873.67e-162.09e-15
familyEnterococcaceae0.1864.98e-162.8e-15
speciesErysipelotrichaceae_bacterium_2_2_44A0.1856.62e-163.68e-15
speciesStreptococcus_mutans0.1849.73e-165.34e-15
speciesLactobacillus_gasseri0.1841.16e-156.29e-15
speciesLactobacillus_casei_paracasei0.1831.69e-159.06e-15
speciesBifidobacterium_breve0.1822.53e-151.34e-14
familyClostridiales_Family_XI_Incertae_Sedis0.1789.01e-154.73e-14
speciesBlautia_hydrogenotrophica0.1771.32e-146.85e-14
speciesRuminococcus_torques0.1761.71e-148.77e-14
speciesDialister_invisus0.1761.77e-148.98e-14
genusDialister0.1761.9e-149.54e-14
speciesLactobacillus_rhamnosus0.1735.65e-142.81e-13
speciesBacteroides_vulgatus-0.171.24e-136.1e-13
genusParvimonas0.1682.51e-131.22e-12
speciesParvimonas_unclassified0.1682.59e-131.25e-12
genusPeptostreptococcus0.1683e-131.43e-12
speciesEnterococcus_faecium0.1673.6e-131.7e-12
speciesEubacterium_ramulus0.1648.56e-134e-12
speciesLactobacillus_mucosae0.162.96e-121.37e-11
speciesErysipelotrichaceae_bacterium_21_30.1594.6e-122.11e-11
speciesFusobacterium_mortiferum-0.1594.72e-122.14e-11
familyMicrococcaceae0.1585.96e-122.68e-11
genusRothia0.1586.34e-122.82e-11
familyLeuconostocaceae0.1579.77e-124.31e-11
familyRikenellaceae-0.1561.23e-115.33e-11
genusAlistipes-0.1561.23e-115.33e-11
speciesErysipelotrichaceae_bacterium_6_1_450.1561.25e-115.36e-11
genusLachnospiraceae_noname0.1551.57e-116.68e-11
classErysipelotrichia0.1551.79e-117.41e-11
orderErysipelotrichales0.1551.79e-117.41e-11
familyErysipelotrichaceae0.1551.79e-117.41e-11
speciesRothia_mucilaginosa0.1523.63e-111.49e-10
genusLactococcus0.1524.39e-111.79e-10
classBetaproteobacteria-0.1514.98e-111.98e-10
genusButyricimonas-0.1515e-111.98e-10
speciesButyricimonas_synergistica-0.1515e-111.98e-10
speciesStreptococcus_australis0.156.34e-112.49e-10
speciesGemella_morbillorum0.1499.92e-113.87e-10
orderBurkholderiales-0.1491.02e-103.95e-10
speciesLactococcus_lactis0.1481.16e-104.45e-10
genusPropionibacterium0.1471.54e-105.86e-10
speciesPrevotella_stercorea-0.1471.87e-107.06e-10
speciesAlistipes_shahii-0.1434.88e-101.83e-09
speciesBacteroides_intestinalis-0.1435.25e-101.95e-09
familySutterellaceae-0.1426.29e-102.32e-09
genusErysipelotrichaceae_noname0.1427.11e-102.6e-09
speciesBacteroides_cellulosilyticus-0.1427.47e-102.71e-09
speciesParabacteroides_goldsteinii-0.1411.04e-093.75e-09
speciesPropionibacterium_freudenreichii0.1391.44e-095.15e-09
genusSubdoligranulum0.1363.85e-091.37e-08
genusPrevotella-0.1354.49e-091.58e-08
speciesEubacterium_eligens-0.1337.05e-092.46e-08
speciesBacteroides_uniformis-0.1337.94e-092.75e-08
speciesSubdoligranulum_unclassified0.1337.97e-092.75e-08
speciesLactobacillus_plantarum0.1338.05e-092.75e-08
classDeltaproteobacteria-0.1311.38e-084.62e-08
orderDesulfovibrionales-0.1311.38e-084.62e-08
familyDesulfovibrionaceae-0.1311.38e-084.62e-08
speciesTuricibacter_sanguinis0.1282.6e-088.64e-08
speciesPrevotella_copri-0.1282.81e-089.27e-08
familyPrevotellaceae-0.1283.09e-081.01e-07
speciesBacteroides_massiliensis-0.1273.36e-081.09e-07
speciesBacteroides_ovatus-0.1255.38e-081.73e-07
speciesBacteroides_salyersiae-0.1255.4e-081.73e-07
genusLeuconostoc0.1255.72e-081.82e-07
speciesEubacterium_rectale0.1248.11e-082.57e-07
speciesAlistipes_finegoldii-0.1231.07e-073.37e-07
genusTuricibacter0.1221.1e-073.44e-07
familyPropionibacteriaceae0.1211.4e-074.35e-07
genusRoseburia-0.121.98e-076.11e-07
familyVeillonellaceae0.1183.24e-079.93e-07
genusParasutterella-0.1164.65e-071.41e-06
speciesParasutterella_excrementihominis-0.1164.65e-071.41e-06
speciesBacteroides_nordii-0.1164.78e-071.44e-06
speciesDorea_unclassified-0.1164.95e-071.48e-06
familyFusobacteriaceae-0.1165.1e-071.51e-06
phylumFusobacteria-0.1165.29e-071.54e-06
classFusobacteriia-0.1165.29e-071.54e-06
orderFusobacteriales-0.1165.29e-071.54e-06
genusFusobacterium-0.1155.73e-071.66e-06
speciesLactobacillus_amylovorus0.1156.03e-071.74e-06
speciesAlistipes_putredinis-0.1156.75e-071.93e-06
speciesLactobacillus_acidophilus0.1147.47e-072.12e-06
speciesSubdoligranulum_sp_4_3_54A2FAA0.1148.14e-072.3e-06
speciesCoriobacteriaceae_bacterium_phI0.1138.86e-072.49e-06
speciesBlautia_producta0.1131.01e-062.82e-06
speciesEubacterium_limosum0.1121.15e-063.19e-06
speciesBilophila_unclassified-0.1092.09e-065.77e-06
genusCoriobacteriaceae_noname0.1092.41e-066.61e-06
speciesTuricibacter_unclassified0.1082.69e-067.34e-06
genusBilophila-0.1083.04e-068.25e-06
genusAcidaminococcus0.1083.12e-068.42e-06
genusCoprobacillus0.1073.51e-069.41e-06
speciesBacteroides_stercoris-0.1073.71e-069.89e-06
phylumProteobacteria-0.1064.37e-061.16e-05
speciesEubacterium_ventriosum0.1064.54e-061.2e-05
speciesStreptococcus_mitis_oralis_pneumoniae0.1055.69e-061.49e-05
speciesPeptostreptococcus_anaerobius0.1046.5e-061.7e-05
speciesAlistipes_sp_AP110.1046.8e-061.76e-05
speciesParabacteroides_unclassified-0.1037.33e-061.89e-05
genusMitsuokella0.1037.48e-061.92e-05
speciesRoseburia_inulinivorans-0.1037.56e-061.93e-05
genusPorphyromonas0.1037.69e-061.95e-05
speciesPeptostreptococcus_stomatis0.1037.82e-061.97e-05
speciesMitsuokella_unclassified0.1029.88e-062.48e-05
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1011.14e-052.85e-05
speciesBacteroides_oleiciplenus-0.1011.18e-052.93e-05
speciesEnterococcus_faecalis0.1011.29e-053.19e-05
speciesLactobacillus_fermentum0.11.45e-053.56e-05
speciesBacteroides_clarus-0.11.49e-053.64e-05
familyEubacteriaceae0.11.51e-053.67e-05
genusEubacterium0.0991.64e-053.97e-05
speciesLactobacillus_sanfranciscensis0.0991.84e-054.43e-05
speciesParabacteroides_johnsonii-0.0991.96e-054.7e-05
speciesLactobacillus_vaginalis0.0972.69e-056.41e-05
genusWeissella0.0972.78e-056.59e-05
speciesLachnospiraceae_bacterium_2_1_58FAA0.0972.81e-056.63e-05
speciesBacteroides_faecis-0.0963.38e-057.94e-05
genusPeptoniphilus0.0963.46e-058.08e-05
speciesFusobacterium_varium-0.0944.67e-050.000109
genusSutterellaceae_unclassified-0.0935.31e-050.000123
speciesParabacteroides_distasonis-0.0935.88e-050.000135
speciesFusobacterium_ulcerans-0.0927.19e-050.000165
speciesEubacterium_cylindroides0.0917.53e-050.000172
speciesParabacteroides_merdae-0.099.2e-050.000209
speciesAcidaminococcus_unclassified0.099.5e-050.000215
classNegativicutes0.0880.0001360.000304
orderSelenomonadales0.0880.0001360.000304
speciesLactobacillus_ruminis0.0880.0001410.000314
speciesPeptostreptococcaceae_noname_unclassified0.0880.0001420.000315
speciesBacteroides_dorei-0.0880.0001510.000333
speciesLactobacillus_salivarius0.0860.0002130.000468
orderPseudomonadales0.0850.0002180.000476
genusHaemophilus-0.0840.0002720.000592
speciesBacteroides_finegoldii-0.0840.0002850.000617
speciesHaemophilus_parainfluenzae-0.0830.0003050.000657
speciesCoprobacillus_sp_D60.0830.0003120.000669
familyBurkholderiales_noname-0.0830.0003180.000679
speciesPorphyromonas_asaccharolytica0.0830.0003220.000685
speciesEggerthella_sp_1_3_56FAA0.0830.0003310.000701
orderPasteurellales-0.0830.0003340.000701
familyPasteurellaceae-0.0830.0003340.000701
speciesCoprobacillus_unclassified0.0820.0003580.000748
speciesBacteroides_plebeius-0.0820.0003860.000803
speciesLactobacillus_crispatus0.0820.0003950.000818
genusBurkholderiales_noname-0.0820.0004130.000848
speciesBurkholderiales_bacterium_1_1_47-0.0820.0004130.000848
speciesLachnospiraceae_bacterium_1_4_56FAA0.0810.000440.000899
speciesBilophila_wadsworthia-0.0810.0004620.00094
genusClostridiales_noname-0.0810.0004780.000968
speciesWeissella_confusa0.080.0005320.00107
genusFaecalibacterium0.0780.0006850.00137
speciesFaecalibacterium_prausnitzii0.0780.0006850.00137
speciesLachnospiraceae_bacterium_5_1_57FAA0.0780.0007510.0015
speciesKlebsiella_pneumoniae-0.0770.0007970.00158
speciesRuminococcus_sp_JC3040.0770.0009190.00181
genusDesulfovibrio-0.0770.0009230.00182
speciesErysipelotrichaceae_bacterium_3_1_530.0750.001140.00223
speciesBacteroides_caccae-0.0750.001170.00228
speciesWeissella_cibaria0.0750.001230.00239
phylumVerrucomicrobia0.0740.001360.00258
classVerrucomicrobiae0.0740.001360.00258
orderVerrucomicrobiales0.0740.001360.00258
familyVerrucomicrobiaceae0.0740.001360.00258
genusAkkermansia0.0740.001360.00258
speciesAkkermansia_muciniphila0.0740.001360.00258
speciesMethanobrevibacter_smithii0.0740.001390.00262
speciesClostridium_ramosum0.0740.001430.00269
genusSiphoviridae_noname0.0710.002240.0042
genusMethanobrevibacter0.070.002440.00455
speciesParaprevotella_xylaniphila-0.070.002590.00481
speciesClostridium_asparagiforme-0.0690.002760.00511
speciesRoseburia_unclassified0.0690.002980.00549
speciesBifidobacterium_angulatum0.0680.003150.00579
phylumViruses_noname0.0680.003340.00609
classViruses_noname0.0680.003340.00609
genusStaphylococcus0.0670.003970.00721
speciesLachnospiraceae_bacterium_1_1_57FAA0.0660.004140.00749
speciesClostridium_nexile-0.0650.004890.00881
speciesPorphyromonas_uenonis0.0650.004910.00881
classMethanobacteria0.0640.005710.0101
orderMethanobacteriales0.0640.005710.0101
familyMethanobacteriaceae0.0640.005710.0101
familyStaphylococcaceae0.0620.006920.0122
genusRuminococcaceae_noname0.0620.00740.013
speciesRuminococcaceae_bacterium_D160.0620.00740.013
phylumEuryarchaeota0.0620.007530.0132
speciesLactobacillus_oris0.0620.007810.0136
speciesClostridiales_bacterium_1_7_47FAA-0.0610.008010.0139
speciesMegamonas_rupellensis-0.0610.008060.0139
familySiphoviridae0.0610.008180.0141
speciesMegasphaera_elsdenii0.060.009760.0168
genusAcidaminococcaceae_unclassified0.0590.01130.0193
genusPseudoflavonifractor0.0580.01260.0214
speciesPseudoflavonifractor_capillosus0.0580.01260.0214
speciesAcidaminococcus_fermentans0.0570.01320.0223
orderCaudovirales0.0560.01540.026
speciesCoprococcus_sp_ART55_10.0560.01560.0262
speciesMegamonas_unclassified-0.0550.01660.0278
speciesCoprobacillus_sp_29_10.0550.01750.0292
genusMegamonas-0.0550.01810.0301
genusKlebsiella-0.0540.0190.0315
speciesAlistipes_indistinctus-0.0540.01950.0322
speciesAcidaminococcus_intestini0.0540.02010.0331
genusOxalobacter-0.0540.02040.0333
speciesOxalobacter_formigenes-0.0540.02040.0333
speciesOscillibacter_sp_KLE_1728-0.0540.02060.0335
familyOscillospiraceae-0.0530.02090.0338
genusOscillibacter-0.0530.02090.0338
speciesDesulfovibrio_piger-0.0530.02250.0362
speciesBacteroides_fluxus-0.0520.02510.0403
speciesClostridium_bolteae-0.050.02960.0474
speciesAlistipes_unclassified0.050.03180.0507
genusMethanosphaera0.0490.03340.0529
speciesMethanosphaera_stadtmanae0.0490.03340.0529
speciesMegamonas_funiformis-0.0490.03450.0545
familyOxalobacteraceae-0.0490.03490.0549
speciesDesulfovibrio_desulfuricans-0.0480.03710.0581
genusPantoea-0.0480.03730.0581
speciesPantoea_unclassified-0.0480.03730.0581
genusParaprevotella-0.0480.03860.0599
speciesClostridium_citroniae-0.0480.03920.0607
speciesAlistipes_onderdonkii-0.0470.04010.0619
speciesParaprevotella_clara-0.0470.04050.0623
speciesClostridium_spiroforme0.0460.04490.0688
speciesClostridium_symbiosum-0.0460.0460.0703
speciesMegasphaera_unclassified0.0460.0470.0716
speciesParaprevotella_unclassified-0.0460.04910.0745
speciesLactococcus_garvieae0.0450.05210.0788
speciesOscillibacter_unclassified-0.0450.05240.079
speciesClostridium_sp_L2_500.0450.05320.08
orderViruses_noname0.0440.05580.0836
speciesStreptococcus_phage_Sfi210.0440.05790.0865
speciesFusobacterium_nucleatum0.0430.06150.0916
speciesLactococcus_phage_P6800.0430.06180.0917
speciesEnterobacteria_phage_HK544-0.0430.06240.0922
speciesRoseburia_hominis-0.0430.06250.0922
familyBacteroidales_noname0.0430.06310.0922
genusBacteroidales_noname0.0430.06310.0922
speciesBacteroidales_bacterium_ph80.0430.06310.0922
speciesPrevotella_buccae-0.0420.0720.105
speciesBacteroides_pectinophilus-0.0420.07220.105
classGammaproteobacteria-0.0410.07690.111
speciesRoseburia_intestinalis-0.0410.07970.115
speciesParabacteroides_sp_D13-0.040.08070.116
speciesSutterella_wadsworthensis0.040.08090.116
speciesLactococcus_phage_936_sensu_lato-0.040.08460.121
genusLambdalikevirus0.040.08470.121
genusBarnesiella0.040.08590.122
speciesBarnesiella_intestinihominis0.040.08590.122
speciesAnaerotruncus_colihominis0.0390.08790.124
speciesRuminococcus_gnavus0.0390.0940.132
speciesVeillonella_parvula0.0380.0980.138
speciesBacteroides_eggerthii-0.0380.1010.141
genusC2likevirus0.0380.1030.144
genusClostridiaceae_noname-0.0380.1040.144
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.0380.1040.144
speciesClostridiaceae_bacterium_JC118-0.0380.1040.144
genusSlackia0.0370.1060.146
speciesCollinsella_tanakaei-0.0370.1130.155
speciesMegamonas_hypermegale-0.0370.1140.156
speciesAlistipes_senegalensis-0.0370.1140.156
speciesRuminococcus_callidus0.0360.1240.169
genusEnterobacter-0.0350.1250.17
speciesSutterella_parvirubra-0.0360.1250.17
familyClostridiales_noname-0.0350.1270.172
genusPhascolarctobacterium-0.0350.130.175
speciesPhascolarctobacterium_succinatutens-0.0350.130.175
speciesPrevotella_bivia0.0350.1310.175
speciesC2likevirus_unclassified0.0350.1310.175
speciesOdoribacter_laneus0.0340.1360.181
genusMegasphaera0.0340.1370.182
speciesLachnospiraceae_bacterium_8_1_57FAA0.0340.1390.184
speciesLeuconostoc_lactis0.0340.1440.189
speciesEubacterium_dolichum0.0340.1440.189
speciesBacteroides_fragilis-0.0340.1440.189
genusHoldemania0.0340.1450.19
speciesBacteroides_sp_3_1_19-0.0340.1470.192
speciesMethanobrevibacter_unclassified0.0330.1490.194
speciesEnterobacter_cloacae-0.0330.1550.202
familyAcidaminococcaceae0.0320.1680.218
speciesKlebsiella_oxytoca0.0320.170.22
speciesStreptococcus_lutetiensis0.0310.1740.224
speciesEubacterium_biforme0.0310.1840.237
genusButyricicoccus0.030.1890.242
speciesButyricicoccus_pullicaecorum0.030.1890.242
genusSutterella0.030.1940.247
speciesLactococcus_phage_bIL670.030.2020.257
speciesDialister_succinatiphilus0.0290.2030.258
genusActinobacillus-0.0290.2170.274
speciesActinobacillus_unclassified-0.0290.2170.274
speciesHoldemania_filiformis0.0280.2180.274
speciesButyrivibrio_crossotus-0.0280.2270.285
speciesAlistipes_sp_HGB5-0.0280.2310.289
speciesBacteroides_coprocola-0.0280.2320.29
speciesButyrivibrio_unclassified0.0270.250.311
speciesEnterobacter_aerogenes-0.0260.2650.329
speciesCitrobacter_freundii-0.0250.2720.337
speciesEscherichia_coli-0.0250.2760.34
familyViruses_noname-0.0250.2770.34
genusViruses_noname-0.0250.2770.34
speciesClostridium_sp_KLE_17550.0240.30.368
speciesEscherichia_unclassified0.0240.3020.369
speciesHoldemania_unclassified0.0230.3270.399
speciesStreptococcus_infantarius0.0220.3490.425
classEpsilonproteobacteria0.0210.3630.438
orderCampylobacterales0.0210.3630.438
speciesClostridium_clostridioforme0.0210.3630.438
speciesLachnospiraceae_bacterium_7_1_58FAA-0.020.3860.465
speciesKlebsiella_sp_MS_92_30.020.3890.467
speciesRuminococcus_champanellensis0.020.3920.47
speciesBacteroides_sp_1_1_6-0.0190.40.477
orderEnterobacteriales-0.0190.4010.477
familyEnterobacteriaceae-0.0190.4010.477
speciesLachnospiraceae_bacterium_3_1_46FAA0.0190.4050.48
genusFlavonifractor-0.0190.4230.499
speciesFlavonifractor_plautii-0.0190.4230.499
speciesParabacteroides_sp_20_3-0.0180.4260.501
speciesBacteroides_coprophilus-0.0180.4380.514
genusEscherichia-0.0180.440.515
genusMorganella-0.0170.4680.545
speciesMorganella_morganii-0.0170.4680.545
genusCitrobacter-0.0170.470.546
speciesAnaerotruncus_unclassified-0.0160.480.557
speciesVeillonella_atypica0.0160.4870.563
familyCampylobacteraceae0.0160.4890.564
speciesEubacterium_siraeum0.0160.4920.566
speciesCitrobacter_unclassified-0.0160.4980.572
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0150.5110.585
genusCampylobacter0.0150.5280.602
speciesCollinsella_unclassified-0.0150.5280.602
speciesBacteroides_barnesiae-0.0140.5330.606
genusClostridium0.0140.5420.615
speciesVeillonella_unclassified-0.0140.5470.619
familyPodoviridae0.0140.5490.62
genusVeillonella0.0140.5550.625
speciesKlebsiella_unclassified-0.0130.5710.642
speciesSlackia_piriformis0.0120.5980.67
genusButyrivibrio-0.0120.6120.685
familyClostridiaceae0.0110.620.692
genusPyramidobacter0.0110.6260.695
speciesPyramidobacter_piscolens0.0110.6260.695
speciesEubacterium_sp_3_1_31-0.0110.6350.704
speciesOdoribacter_unclassified-0.0110.640.707
speciesHaemophilus_sputorum0.010.6540.721
speciesLactococcus_phage_phi70.010.6580.724
genusCatenibacterium0.010.6810.746
speciesCatenibacterium_mitsuokai0.010.6810.746
speciesBacteroides_salanitronis0.0090.6850.747
speciesHoldemania_sp_AP2-0.0090.6850.747
familySuccinivibrionaceae0.0090.7090.771
speciesCoprococcus_eutactus0.0080.7340.796
speciesBacteroides_sp_4_3_47FAA0.0080.7380.799
familyMyoviridae-0.0070.7580.815
genusSuccinatimonas0.0070.7590.815
speciesSuccinatimonas_hippei0.0070.7590.815
speciesClostridium_sp_ATCC_BAA_442-0.0070.760.815
speciesLactobacillus_reuteri0.0070.7660.82
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0070.7680.82
genusAnaerotruncus0.0070.770.82
phylumSynergistetes0.0060.7790.821
classSynergistia0.0060.7790.821
orderSynergistales0.0060.7790.821
familySynergistaceae0.0060.7790.821
speciesStreptococcus_pasteurianus0.0070.7790.821
speciesHaemophilus_paraphrohaemolyticus0.0060.8110.853
speciesMitsuokella_multacida0.0050.8160.856
speciesVeillonella_dispar-0.0050.8210.859
speciesClostridium_perfringens0.0050.8250.862
speciesCollinsella_intestinalis0.0050.8410.876
genusProteus-0.0040.8470.881
speciesAnaerostipes_unclassified-0.0040.850.882
speciesLactococcus_phage_jm20.0040.8610.891
speciesProteus_mirabilis-0.0040.8630.891
speciesRuminococcus_lactaris0.0040.8730.9
genusTunalikevirus0.0030.8850.91
speciesAggregatibacter_segnis0.0030.9050.927
orderAeromonadales0.0030.9070.927
speciesKlebsiella_phage_KP36-0.0030.9080.927
genusMyoviridae_noname-0.0030.9090.927
speciesOscillibacter_sp_KLE_1745-0.0020.9220.938
speciesBacteroides_sp_2_1_220.0020.9310.945
speciesClostridium_hathewayi0.0020.9360.948
speciesCampylobacter_concisus0.0010.9590.969
speciesLachnospiraceae_bacterium_6_1_63FAA0.00.9830.991
genusAggregatibacter0.00.9930.997
genusCoprobacter0.00.9950.997
speciesCoprobacter_fastidiosus0.00.9950.997
speciesMegasphaera_micronuciformis0.00.9970.997
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Ulcerative colitisSpain78660.01516096399240.01349428715650.021481097772329439.70839
Liver cirrhosisChina1201140.006765693916720.003704714993330.02232617484021246241.8623
Colorectal cancerAustria64350.06680537452830.08736020901710.122489130622582519.7084
Type II diabetesDenmark752770.006194704227720.004602458497160.1517184700561146937.5947
Crohns diseaseSpain17660.01792756137490.01349428715650.163410356061576852.4289
Type II diabetesChina1831850.02662936473310.008191239237370.1853031720061283242.4072
ObesityDenmark1691230.004460477706340.004765309817410.626191202612224173.1347
Rheumatoid arthritisChina127980.01611065975820.01605679471260.7787569725362438081.3019
Type II diabetesSweden53920.02314415807980.02349421431870.8519166135852555586.5391
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382