MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-05-09 21:29:16 PST
Job id & description: 1807, clbL
Query type: dna
Count queries & homologs: 1, 1
Min % identity & max e-value: 50%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
query962501CompleteK01426COG0154ProteobacteriaEscherichia100.098.39100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEscherichia_coli0.1994.31e-181.1e-15
genusEscherichia0.1985.19e-181.1e-15
orderEnterobacteriales0.1979.28e-181.1e-15
familyEnterobacteriaceae0.1979.28e-181.1e-15
classGammaproteobacteria0.1735.26e-144.97e-12
speciesEscherichia_unclassified0.1382.13e-091.6e-07
phylumProteobacteria0.1372.38e-091.6e-07
genusPantoea0.1346.44e-093.38e-07
speciesPantoea_unclassified0.1346.44e-093.38e-07
genusKlebsiella0.1321.12e-085.29e-07
speciesLactobacillus_vaginalis0.1283.16e-081.36e-06
speciesKlebsiella_pneumoniae0.1165e-071.97e-05
speciesErysipelotrichaceae_bacterium_2_2_44A0.1073.38e-060.000123
speciesKlebsiella_unclassified0.0991.74e-050.000587
genusMorganella0.0982.36e-050.000696
speciesMorganella_morganii0.0982.36e-050.000696
orderCaudovirales0.0918.81e-050.00245
speciesFusobacterium_nucleatum0.0860.0002080.00524
speciesMegasphaera_micronuciformis0.0860.0002110.00524
genusFusobacterium0.0830.000320.00669
phylumFusobacteria0.0830.0003260.00669
classFusobacteriia0.0830.0003260.00669
orderFusobacteriales0.0830.0003260.00669
familyFusobacteriaceae0.0820.0003990.00785
genusActinomyces0.080.0005140.00933
genusFaecalibacterium-0.080.0005370.00933
speciesFaecalibacterium_prausnitzii-0.080.0005370.00933
familyActinomycetaceae0.080.0005740.00933
speciesClostridium_symbiosum0.0790.0005920.00933
speciesClostridium_perfringens0.0790.0005930.00933
speciesStreptococcus_anginosus0.0790.0006280.00943
speciesErysipelotrichaceae_bacterium_6_1_450.0790.0006480.00943
genusProteus0.0790.0006590.00943
speciesPorphyromonas_asaccharolytica0.0780.0007150.00979
genusCoprobacillus0.0780.0007260.00979
familyClostridiales_Family_XI_Incertae_Sedis0.0770.0008630.0113
genusPorphyromonas0.0750.001110.0142
speciesBifidobacterium_dentium0.0740.00130.0161
phylumViruses_noname0.0730.001570.0185
classViruses_noname0.0730.001570.0185
speciesGemella_morbillorum0.0720.001790.0206
speciesClostridium_hathewayi0.0710.002010.0226
genusParvimonas0.0710.002150.0236
speciesParvimonas_unclassified0.0710.002210.0237
speciesClostridium_clostridioforme0.070.002390.0249
genusClostridium0.070.002460.0249
speciesBacteroides_fragilis0.070.002480.0249
speciesPorphyromonas_uenonis0.0690.002670.0263
familyClostridiaceae0.0690.002770.0267
genusMegasphaera0.0690.002840.0268
speciesCollinsella_intestinalis0.0670.00370.0339
speciesCoprobacillus_unclassified0.0670.003740.0339
familySiphoviridae0.0670.003990.0355
speciesErysipelotrichaceae_bacterium_21_30.0660.004190.0366
speciesEnterococcus_faecalis0.0650.005260.0451
speciesRuminococcus_gnavus0.0640.005810.049
genusPeptostreptococcus0.0630.006410.0531
speciesClostridium_nexile0.0620.006950.0558
speciesClostridium_ramosum0.0620.006970.0558
speciesFusobacterium_mortiferum0.0620.007320.0576
speciesClostridium_bolteae0.0620.007560.0585
speciesPeptostreptococcus_stomatis0.060.009970.0759
speciesPrevotella_buccae0.0590.01040.0779
speciesLactobacillus_oris0.0590.01130.0828
speciesStreptococcus_parasanguinis0.0580.01140.0828
genusAggregatibacter0.0570.01340.0958
familyCampylobacteraceae0.0570.01450.102
orderActinomycetales0.0560.0150.103
genusDesulfovibrio-0.0560.01510.103
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0560.01570.106
speciesEnterobacter_aerogenes0.0560.01630.107
speciesEggerthella_unclassified0.0560.01630.107
speciesKlebsiella_oxytoca0.0550.01740.112
speciesProteus_mirabilis0.0550.01760.112
speciesLachnospiraceae_bacterium_2_1_58FAA0.0540.01910.12
speciesAggregatibacter_segnis0.0540.01930.12
speciesStreptococcus_vestibularis0.0540.01950.12
genusCampylobacter0.0540.020.121
classErysipelotrichia0.0530.02080.121
orderErysipelotrichales0.0530.02080.121
familyErysipelotrichaceae0.0530.02080.121
genusFlavonifractor0.0530.02280.129
speciesFlavonifractor_plautii0.0530.02280.129
familyEnterococcaceae0.0530.02290.129
speciesVeillonella_dispar0.0520.0240.13
speciesCoprococcus_comes-0.0520.02410.13
classEpsilonproteobacteria0.0520.02430.13
orderCampylobacterales0.0520.02430.13
genusSiphoviridae_noname0.0520.02520.134
speciesStreptococcus_mutans0.0520.02570.135
genusEnterococcus0.0510.02720.141
genusEggerthella0.0510.0280.144
speciesVeillonella_atypica0.050.02920.148
speciesClostridium_sp_L2_50-0.050.02940.148
speciesDesulfovibrio_desulfuricans-0.050.03040.151
genusErysipelotrichaceae_noname0.050.03140.154
speciesCollinsella_unclassified0.0490.03230.157
speciesBacteroides_pectinophilus-0.0490.03250.157
speciesBacteroides_uniformis-0.0490.03460.165
genusRuminococcaceae_noname0.0480.03840.179
speciesRuminococcaceae_bacterium_D160.0480.03840.179
speciesEubacterium_ramulus-0.0470.04010.186
speciesParabacteroides_sp_20_30.0470.04070.187
speciesEubacterium_ventriosum-0.0470.04230.192
familyPodoviridae0.0470.04430.195
speciesLactobacillus_gasseri0.0460.04440.195
familyStreptococcaceae0.0460.04490.195
genusStreptococcus0.0460.04540.195
speciesClostridiales_bacterium_1_7_47FAA0.0460.04550.195
orderLactobacillales0.0460.04590.195
speciesMitsuokella_unclassified-0.0460.04610.195
genusRoseburia-0.0460.04680.195
speciesEubacterium_eligens-0.0460.04680.195
speciesRothia_mucilaginosa0.0460.0470.195
classBacilli0.0450.05090.209
genusMitsuokella-0.0450.05320.215
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0450.05340.215
familyEubacteriaceae-0.0440.05440.217
genusEubacterium-0.0440.05520.217
genusPrevotella0.0440.05610.217
speciesClostridium_citroniae0.0440.05610.217
speciesSubdoligranulum_sp_4_3_54A2FAA0.0440.05620.217
speciesLeuconostoc_lactis-0.0440.05920.226
genusBlautia0.0440.05940.226
speciesHaemophilus_paraphrohaemolyticus0.0430.06020.227
speciesDesulfovibrio_piger-0.0430.06180.232
speciesCampylobacter_concisus0.0430.0660.243
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0430.0660.243
genusCitrobacter0.0420.06760.246
speciesStreptococcus_thermophilus0.0420.06770.246
classClostridia-0.0420.07060.251
orderClostridiales-0.0420.07060.251
familyMicrococcaceae0.0420.07080.251
speciesFusobacterium_ulcerans0.0420.07120.251
genusButyrivibrio-0.0420.07180.251
speciesDorea_formicigenerans-0.0410.07290.253
speciesMegasphaera_unclassified0.0410.07360.253
speciesBacteroides_plebeius0.0410.07450.253
genusRothia0.0410.07480.253
speciesRoseburia_unclassified-0.0410.07510.253
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0410.07830.262
familyBacillales_noname0.040.08510.281
genusGemella0.040.08510.281
speciesLactobacillus_salivarius0.040.08560.281
speciesC2likevirus_unclassified0.040.08660.282
speciesCoprobacillus_sp_29_10.0390.090.291
genusEnterobacter0.0390.09110.293
speciesBifidobacterium_bifidum0.0390.09560.302
speciesPrevotella_stercorea0.0390.09580.302
speciesStreptococcus_gordonii0.0380.09610.302
speciesButyrivibrio_crossotus-0.0380.09820.307
genusC2likevirus0.0380.09960.308
genusPeptoniphilus0.0380.1010.308
genusSolobacterium0.0380.1010.308
speciesSolobacterium_moorei0.0380.1010.308
speciesLactobacillus_amylovorus-0.0370.110.33
speciesParabacteroides_johnsonii0.0370.1110.33
speciesBifidobacterium_adolescentis-0.0370.1110.33
orderAeromonadales0.0370.1120.33
speciesStreptococcus_salivarius0.0370.1120.33
speciesStreptococcus_mitis_oralis_pneumoniae0.0370.1130.331
speciesParabacteroides_goldsteinii0.0360.1160.338
phylumFirmicutes-0.0360.1170.339
speciesBacteroides_vulgatus-0.0360.1210.348
speciesStreptococcus_infantarius0.0360.1230.352
familyMyoviridae0.0360.1250.355
speciesAnaerostipes_unclassified0.0350.1260.356
genusCoriobacteriaceae_noname0.0350.1360.382
genusActinobacillus0.0340.1430.397
speciesActinobacillus_unclassified0.0340.1430.397
speciesStreptococcus_phage_Sfi210.0330.1490.411
speciesAcidaminococcus_fermentans0.0330.1510.414
speciesAlistipes_onderdonkii0.0330.1520.415
genusCoprococcus-0.0330.1580.422
speciesAlistipes_senegalensis-0.0330.1580.422
familyRuminococcaceae-0.0330.1590.422
speciesHaemophilus_sputorum0.0330.1590.422
familyClostridiales_noname0.0330.160.422
speciesLachnospiraceae_bacterium_1_1_57FAA0.0320.160.422
speciesLactococcus_phage_P6800.0320.1620.422
speciesEnterobacter_cloacae0.0320.1620.422
genusPseudoflavonifractor0.0320.170.434
speciesBacteroides_salanitronis0.0320.170.434
speciesPseudoflavonifractor_capillosus0.0320.170.434
speciesCoriobacteriaceae_bacterium_phI0.0320.170.434
speciesBacteroides_finegoldii0.0310.1740.439
speciesClostridium_sp_ATCC_BAA_4420.0310.1760.439
speciesLachnospiraceae_bacterium_1_4_56FAA0.0310.1760.439
speciesClostridium_asparagiforme0.0310.1770.439
speciesAlistipes_shahii-0.0310.1790.439
speciesSutterella_parvirubra0.0310.180.439
orderBacillales0.0310.1810.439
phylumVerrucomicrobia0.0310.1840.439
classVerrucomicrobiae0.0310.1840.439
orderVerrucomicrobiales0.0310.1840.439
familyVerrucomicrobiaceae0.0310.1840.439
genusAkkermansia0.0310.1840.439
speciesAkkermansia_muciniphila0.0310.1840.439
speciesCitrobacter_unclassified0.0310.1860.441
speciesClostridium_leptum0.030.190.446
speciesBacteroides_cellulosilyticus-0.030.190.446
speciesPropionibacterium_freudenreichii-0.030.1910.446
speciesLachnospiraceae_bacterium_5_1_57FAA0.030.1930.449
genusAdlercreutzia-0.030.1960.451
speciesAdlercreutzia_equolifaciens-0.030.1960.451
genusVeillonella0.030.1980.454
speciesKlebsiella_sp_MS_92_3-0.030.2010.458
speciesDorea_longicatena-0.030.2020.458
genusSutterellaceae_unclassified-0.0290.2030.458
familyPeptostreptococcaceae0.0290.2050.461
speciesParabacteroides_distasonis-0.0290.2060.461
genusCoprobacter-0.0290.2110.468
speciesCoprobacter_fastidiosus-0.0290.2110.468
speciesPrevotella_copri0.0280.2260.498
genusDorea-0.0280.2280.5
speciesEnterococcus_faecium0.0280.2290.5
familyBacteroidaceae-0.0280.2340.504
genusBacteroides-0.0280.2340.504
speciesEggerthella_lenta0.0280.2340.504
speciesCoprococcus_catus-0.0270.2360.506
genusDialister0.0270.240.513
speciesLactobacillus_mucosae0.0270.2440.516
speciesParabacteroides_unclassified-0.0270.2440.516
speciesVeillonella_unclassified0.0270.2480.523
speciesAlistipes_sp_AP110.0260.2530.531
genusMethanobrevibacter0.0260.2580.536
speciesAlistipes_indistinctus-0.0260.2580.536
familyPropionibacteriaceae-0.0260.2610.54
genusHaemophilus0.0260.2630.541
phylumBacteroidetes-0.0260.2660.541
classBacteroidia-0.0260.2660.541
orderBacteroidales-0.0260.2660.541
orderPasteurellales0.0260.2680.541
familyPasteurellaceae0.0260.2680.541
speciesLactobacillus_fermentum0.0250.2720.546
speciesBlautia_hydrogenotrophica0.0250.2750.55
speciesRoseburia_intestinalis-0.0250.2790.555
speciesStreptococcus_lutetiensis0.0250.280.555
speciesRuminococcus_torques0.0250.2840.561
genusBarnesiella-0.0240.2920.567
speciesAlistipes_unclassified-0.0240.2920.567
speciesBilophila_wadsworthia0.0240.2920.567
speciesBarnesiella_intestinihominis-0.0240.2920.567
speciesEubacterium_siraeum-0.0240.2970.574
genusLactobacillus0.0240.2990.574
speciesRuminococcus_champanellensis-0.0240.3030.574
speciesHaemophilus_parainfluenzae0.0240.3030.574
genusClostridiales_noname0.0240.3040.574
classMethanobacteria0.0240.3050.574
orderMethanobacteriales0.0240.3050.574
familyMethanobacteriaceae0.0240.3050.574
genusLambdalikevirus0.0240.3070.575
speciesLactobacillus_crispatus0.0240.3080.575
speciesCitrobacter_freundii0.0230.310.576
speciesDialister_invisus0.0230.3150.583
familyPrevotellaceae0.0230.3190.588
phylumEuryarchaeota0.0230.3250.597
familyStaphylococcaceae0.0230.3280.6
speciesLactobacillus_rhamnosus0.0220.3350.609
speciesSlackia_piriformis-0.0220.3370.609
genusButyricicoccus-0.0220.3390.609
speciesButyricicoccus_pullicaecorum-0.0220.3390.609
speciesKlebsiella_phage_KP360.0220.3420.609
speciesRuminococcus_lactaris-0.0220.3420.609
speciesCollinsella_aerofaciens-0.0220.3420.609
speciesVeillonella_parvula0.0220.3440.61
speciesLactobacillus_reuteri-0.0220.3460.611
orderBurkholderiales-0.0220.3470.611
speciesBlautia_producta0.0220.3510.616
familyLactobacillaceae0.0210.3560.622
familyBurkholderiales_noname-0.0210.3570.622
speciesBacteroides_coprophilus0.0210.3610.625
speciesLachnospiraceae_bacterium_6_1_63FAA0.0210.3630.625
speciesLactococcus_phage_phi70.0210.3630.625
genusOdoribacter-0.0210.3640.625
speciesOscillibacter_sp_KLE_1745-0.0210.370.629
genusParasutterella-0.0210.3710.629
speciesParasutterella_excrementihominis-0.0210.3710.629
speciesPeptostreptococcus_anaerobius0.0210.3720.629
speciesSubdoligranulum_unclassified-0.020.3830.637
genusPeptostreptococcaceae_noname0.020.3860.637
speciesMethanobrevibacter_smithii0.020.3870.637
speciesAlistipes_finegoldii-0.020.3890.637
speciesBifidobacterium_angulatum0.020.390.637
genusClostridiaceae_noname0.020.3920.637
genusBurkholderiales_noname-0.020.3920.637
genusBifidobacterium-0.020.3920.637
speciesClostridiaceae_bacterium_JC1180.020.3920.637
speciesBurkholderiales_bacterium_1_1_47-0.020.3920.637
orderBifidobacteriales-0.020.3960.637
familyBifidobacteriaceae-0.020.3960.637
speciesCollinsella_tanakaei0.020.3960.637
speciesDorea_unclassified0.020.3960.637
speciesAnaerotruncus_unclassified-0.020.3970.637
speciesMegasphaera_elsdenii0.0190.4030.645
speciesEubacterium_rectale-0.0190.4160.663
genusTunalikevirus0.0190.4220.671
speciesRuminococcus_obeum-0.0180.4290.679
speciesBacteroides_fluxus-0.0180.4310.68
speciesParabacteroides_sp_D13-0.0180.4330.681
speciesCoprococcus_sp_ART55_1-0.0180.4380.685
speciesBacteroides_massiliensis-0.0180.4380.685
speciesClostridium_bartlettii0.0180.440.685
classBetaproteobacteria-0.0180.4420.685
speciesAcidaminococcus_unclassified-0.0180.4450.685
speciesBacteroides_dorei-0.0180.4450.685
genusButyricimonas-0.0180.4470.685
speciesButyricimonas_synergistica-0.0180.4470.685
speciesOdoribacter_splanchnicus-0.0170.450.687
familySutterellaceae-0.0170.460.697
speciesButyrivibrio_unclassified-0.0170.4610.697
speciesOscillibacter_sp_KLE_1728-0.0170.4610.697
speciesEubacterium_cylindroides0.0170.4660.703
speciesLactococcus_garvieae0.0170.470.706
speciesBacteroides_xylanisolvens-0.0170.4730.708
speciesBacteroides_sp_3_1_19-0.0170.4740.708
genusLeuconostoc-0.0160.4820.717
speciesEubacterium_limosum0.0160.4830.717
speciesBacteroides_coprocola0.0160.4880.722
speciesStreptococcus_pasteurianus0.0160.4930.727
speciesLactococcus_phage_jm20.0160.4950.727
genusPropionibacterium-0.0160.4960.727
genusMethanosphaera-0.0150.510.743
speciesMethanosphaera_stadtmanae-0.0150.510.743
genusSubdoligranulum-0.0150.5140.746
speciesPeptostreptococcaceae_noname_unclassified-0.0150.5260.762
genusBilophila0.0140.5320.768
speciesLactococcus_lactis-0.0140.5340.768
speciesFusobacterium_varium0.0140.5420.777
speciesParabacteroides_merdae0.0140.5440.777
speciesBacteroides_salyersiae0.0140.5450.777
genusPyramidobacter0.0140.5540.785
speciesPyramidobacter_piscolens0.0140.5540.785
genusAnaerotruncus-0.0140.5560.786
speciesRoseburia_hominis-0.0140.5580.786
speciesLactobacillus_ruminis0.0130.5660.793
speciesSutterella_wadsworthensis-0.0130.5660.793
speciesRuminococcus_callidus-0.0130.5760.804
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0130.5840.809
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0130.5850.809
genusLachnospiraceae_noname0.0130.5890.809
speciesMethanobrevibacter_unclassified0.0120.590.809
speciesBacteroides_nordii-0.0120.590.809
genusMyoviridae_noname0.0120.5920.809
speciesBilophila_unclassified0.0120.5920.809
speciesRoseburia_inulinivorans-0.0120.5940.809
familyLachnospiraceae-0.0120.5950.809
speciesClostridium_spiroforme0.0120.6020.817
speciesCoprobacillus_sp_D60.0120.6050.818
speciesBacteroides_eggerthii0.0120.6070.818
genusCatenibacterium-0.0120.610.818
speciesCatenibacterium_mitsuokai-0.0120.610.818
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0120.6180.826
speciesBacteroides_oleiciplenus0.0110.6350.847
speciesParaprevotella_xylaniphila0.0110.6490.863
speciesStreptococcus_sanguinis0.010.6640.878
speciesBacteroides_ovatus-0.010.6640.878
speciesWeissella_confusa-0.010.6790.895
speciesLactobacillus_delbrueckii-0.0090.6840.898
genusOxalobacter-0.0090.6870.898
speciesOxalobacter_formigenes-0.0090.6870.898
speciesClostridium_sp_KLE_17550.0090.690.9
speciesRuminococcus_sp_JC3040.0090.6980.905
genusParabacteroides0.0090.7010.905
orderViruses_noname-0.0090.7020.905
speciesLactobacillus_sanfranciscensis-0.0090.7020.905
familyOxalobacteraceae-0.0090.7060.908
speciesBacteroides_barnesiae-0.0090.7120.911
speciesBacteroides_clarus0.0090.7120.911
speciesBacteroides_thetaiotaomicron0.0080.7190.914
speciesBacteroides_sp_4_3_47FAA-0.0080.7240.914
speciesBacteroides_sp_2_1_22-0.0080.7280.914
genusHoldemania-0.0080.730.914
speciesLactococcus_phage_936_sensu_lato-0.0080.730.914
speciesBacteroides_intestinalis-0.0080.730.914
speciesMitsuokella_multacida-0.0080.7320.914
genusStaphylococcus0.0080.7330.914
speciesLactococcus_phage_bIL67-0.0080.7340.914
speciesBifidobacterium_pseudocatenulatum-0.0080.7340.914
genusPhascolarctobacterium-0.0080.7380.914
speciesPhascolarctobacterium_succinatutens-0.0080.7380.914
genusSlackia-0.0080.740.914
speciesBacteroides_sp_1_1_60.0070.7480.922
speciesMegamonas_funiformis-0.0070.7540.926
speciesCoprococcus_eutactus-0.0070.7560.926
speciesLactobacillus_acidophilus-0.0070.7590.926
speciesEnterobacteria_phage_HK5440.0070.7650.926
speciesLachnospiraceae_bacterium_3_1_46FAA0.0070.7660.926
speciesTuricibacter_sanguinis0.0070.7670.926
speciesLactobacillus_casei_paracasei0.0070.7680.926
speciesBacteroides_faecis0.0070.7730.926
speciesHoldemania_unclassified0.0070.7750.926
genusMegamonas-0.0070.7770.926
speciesEubacterium_dolichum-0.0070.7780.926
genusCollinsella0.0060.7810.926
genusAnaerostipes0.0060.7860.926
speciesEubacterium_sp_3_1_31-0.0060.7860.926
speciesParaprevotella_unclassified0.0060.7860.926
familyBacteroidales_noname0.0060.7870.926
genusBacteroidales_noname0.0060.7870.926
speciesBacteroidales_bacterium_ph80.0060.7870.926
speciesBacteroides_caccae0.0060.790.928
speciesMegamonas_unclassified-0.0060.7920.928
speciesBifidobacterium_longum-0.0060.7990.933
genusParaprevotella0.0060.8050.935
speciesAcidaminococcus_intestini0.0060.8050.935
speciesAnaerostipes_hadrus-0.0060.8090.935
familyOscillospiraceae0.0060.810.935
genusOscillibacter0.0060.810.935
speciesParaprevotella_clara-0.0050.8190.942
genusTuricibacter-0.0050.8220.942
genusLactococcus-0.0050.8240.942
speciesEggerthella_sp_1_3_56FAA0.0050.8240.942
genusOlsenella0.0050.8270.943
genusSutterella-0.0050.8320.944
speciesMegamonas_rupellensis-0.0050.8320.944
genusWeissella-0.0050.8390.95
speciesAnaerotruncus_colihominis0.0050.8450.954
speciesOdoribacter_laneus-0.0040.8520.956
speciesErysipelotrichaceae_bacterium_3_1_530.0040.8540.956
phylumSynergistetes0.0040.8640.956
classSynergistia0.0040.8640.956
orderSynergistales0.0040.8640.956
familySynergistaceae0.0040.8640.956
familySuccinivibrionaceae-0.0040.8670.956
familyViruses_noname-0.0040.8690.956
genusViruses_noname-0.0040.8690.956
speciesWeissella_cibaria-0.0040.8730.956
classNegativicutes0.0040.8750.956
orderSelenomonadales0.0040.8750.956
genusAcidaminococcus0.0040.8760.956
speciesBacteroides_stercoris0.0040.8770.956
familyLeuconostocaceae-0.0030.8810.956
speciesStreptococcus_australis-0.0030.8810.956
speciesHoldemania_filiformis-0.0030.8810.956
speciesEubacterium_biforme0.0030.8860.959
speciesBifidobacterium_animalis-0.0030.8910.962
speciesOscillibacter_unclassified0.0030.90.97
familyVeillonellaceae0.0030.9050.971
speciesEubacterium_hallii0.0030.9050.971
speciesOdoribacter_unclassified-0.0030.9070.971
genusAcidaminococcaceae_unclassified0.0030.9130.975
speciesAlistipes_sp_HGB50.0020.920.975
speciesMegamonas_hypermegale-0.0020.9230.975
genusSuccinatimonas-0.0020.9250.975
speciesSuccinatimonas_hippei-0.0020.9250.975
orderPseudomonadales-0.0020.9270.975
familyPorphyromonadaceae0.0020.9290.975
speciesBifidobacterium_catenulatum0.0020.930.975
phylumActinobacteria-0.0020.9320.975
classActinobacteria-0.0020.9320.975
speciesHoldemania_sp_AP20.0020.9380.977
speciesAlistipes_putredinis-0.0020.9380.977
genusRuminococcus-0.0010.9490.985
familyRikenellaceae0.0010.9550.985
genusAlistipes0.0010.9550.985
orderCoriobacteriales0.0010.9570.985
familyCoriobacteriaceae0.0010.9570.985
speciesBifidobacterium_breve0.0010.9580.985
speciesRuminococcus_bromii0.0010.9620.987
speciesDialister_succinatiphilus0.0010.9670.99
speciesTuricibacter_unclassified-0.0010.9710.992
speciesPrevotella_bivia-0.0010.9750.994
speciesOlsenella_unclassified0.00.9850.999
speciesLactobacillus_plantarum0.00.9880.999
speciesRuminococcus_sp_5_1_39BFAA0.00.9930.999
classDeltaproteobacteria0.00.9980.999
orderDesulfovibrionales0.00.9980.999
familyDesulfovibrionaceae0.00.9980.999
familyAcidaminococcaceae0.00.9990.999
genusGordonibacter0.00.9990.999
speciesGordonibacter_pamelaeae0.00.9990.999
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.001782235092036.09896080508e-050.00113246682236432714.3874
Type II diabetesDenmark752770.0008259930319640.0003923356374190.0013087056371926578.70948
Liver cirrhosisChina1201140.004719534767060.0002028806969140.006794781421281008433.8742
Ulcerative colitisSpain78660.0005582910226366.09896080508e-050.0854825211451648821.4027
Rheumatoid arthritisChina127980.0009139650366380.001010844788080.0862120688943480416.0203
Colorectal cancerAustria64350.001227164484190.0002215466928510.166660583608736224.9086
ObesityDenmark1691230.000634057016910.0005807906573440.2815326737571367244.9574
Type II diabetesSweden53920.001005090798190.001357840315090.423421068881363546.1734
Type II diabetesChina1831850.0005692098877360.0003379951702230.6125389837422309676.3277
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382