MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-05-09 23:01:27 PST
Job id & description: 1808, clbI
Query type: dna
Count queries & homologs: 1, 1
Min % identity & max e-value: 50%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
query127581CompleteK12444COG3321ProteobacteriaEscherichia100.0100.0100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEscherichia_coli0.1951.66e-173.34e-15
genusEscherichia0.1952.01e-173.34e-15
orderEnterobacteriales0.1942.83e-173.34e-15
familyEnterobacteriaceae0.1942.83e-173.34e-15
classGammaproteobacteria0.1761.83e-141.73e-12
genusKlebsiella0.156.77e-115.33e-09
speciesEscherichia_unclassified0.1481.36e-109.17e-09
phylumProteobacteria0.1435.07e-102.99e-08
genusPantoea0.1337.72e-093.64e-07
speciesPantoea_unclassified0.1337.72e-093.64e-07
speciesKlebsiella_pneumoniae0.131.51e-086.48e-07
speciesLactobacillus_vaginalis0.1247.95e-083.13e-06
speciesKlebsiella_unclassified0.1174.36e-071.58e-05
genusMorganella0.1121.28e-064.03e-05
speciesMorganella_morganii0.1121.28e-064.03e-05
speciesStreptococcus_anginosus0.111.72e-065.07e-05
speciesClostridium_nexile0.1092.38e-066.61e-05
phylumFusobacteria0.1047.07e-060.000167
classFusobacteriia0.1047.07e-060.000167
orderFusobacteriales0.1047.07e-060.000167
genusFusobacterium0.1011.09e-050.000234
speciesClostridium_perfringens0.1021.09e-050.000234
familyFusobacteriaceae0.11.62e-050.000332
speciesMegasphaera_micronuciformis0.0972.46e-050.000484
speciesPrevotella_buccae0.0972.65e-050.0005
speciesFusobacterium_nucleatum0.0963.3e-050.000599
genusAggregatibacter0.0954.2e-050.000734
speciesRuminococcus_gnavus0.0945.06e-050.000853
speciesErysipelotrichaceae_bacterium_2_2_44A0.0918.21e-050.00134
speciesClostridium_ramosum0.0890.0001270.002
genusCoprobacillus0.0870.0001550.00236
genusActinomyces0.0850.0002290.00338
genusParvimonas0.0840.000260.00369
speciesParvimonas_unclassified0.0840.0002670.00369
speciesStreptococcus_vestibularis0.0840.0002740.00369
familyActinomycetaceae0.0840.0002830.00369
speciesPeptostreptococcus_stomatis0.0840.0002890.00369
speciesLactobacillus_salivarius0.0830.0003460.0043
familyClostridiales_Family_XI_Incertae_Sedis0.0820.0003720.0044
speciesClostridium_hathewayi0.0820.0003730.0044
speciesAggregatibacter_segnis0.0790.0005830.00662
speciesPorphyromonas_asaccharolytica0.0790.0005890.00662
speciesCoprobacillus_unclassified0.0790.0006230.00684
speciesFusobacterium_ulcerans0.0780.0006850.00735
genusActinobacillus0.0780.0007190.00738
speciesActinobacillus_unclassified0.0780.0007190.00738
speciesKlebsiella_oxytoca0.0780.0007750.00778
genusPeptostreptococcus0.0770.0008820.00867
speciesBifidobacterium_dentium0.0750.001110.0107
speciesEnterococcus_faecalis0.0750.001130.0107
genusClostridium0.0750.001160.0107
speciesLachnospiraceae_bacterium_2_1_58FAA0.0750.001190.0108
speciesPorphyromonas_uenonis0.0740.001350.012
familyClostridiaceae0.0740.001380.0121
speciesFusobacterium_mortiferum0.0740.001460.0124
speciesBacteroides_fragilis0.0740.001470.0124
genusFlavonifractor0.0720.001830.0149
speciesFlavonifractor_plautii0.0720.001830.0149
orderCaudovirales0.0710.002250.018
speciesGemella_morbillorum0.070.002410.019
speciesErysipelotrichaceae_bacterium_6_1_450.070.002490.0193
genusFaecalibacterium-0.0690.002690.0202
speciesFaecalibacterium_prausnitzii-0.0690.002690.0202
genusPorphyromonas0.0690.002830.0209
speciesMitsuokella_unclassified-0.0680.003090.0224
orderActinomycetales0.0680.003230.023
speciesSubdoligranulum_unclassified-0.0680.003260.023
speciesClostridium_bolteae0.0670.003710.0258
speciesEubacterium_siraeum-0.0670.003830.0262
speciesBacteroides_plebeius0.0670.003980.0268
speciesEubacterium_ramulus-0.0660.004030.0268
familyBacillales_noname0.0660.004270.0276
genusGemella0.0660.004270.0276
speciesLactobacillus_oris0.0660.004410.0277
genusSubdoligranulum-0.0660.004440.0277
genusMitsuokella-0.0660.004460.0277
speciesHaemophilus_paraphrohaemolyticus0.0650.004710.0289
classClostridia-0.0650.004840.0289
orderClostridiales-0.0650.004840.0289
genusEnterobacter0.0650.004950.0292
familyCampylobacteraceae0.0640.00550.032
speciesClostridium_clostridioforme0.0640.006010.0343
familyEnterococcaceae0.0630.006040.0343
speciesStreptococcus_parasanguinis0.0630.006450.0362
genusEnterococcus0.0620.007060.0392
speciesCampylobacter_concisus0.0620.007370.0398
genusMegasphaera0.0620.007410.0398
genusCampylobacter0.0620.007420.0398
speciesAnaerotruncus_unclassified-0.0610.007860.0417
genusProteus0.0610.008040.0422
speciesClostridium_symbiosum0.0610.008250.0427
speciesStreptococcus_salivarius0.0610.008340.0427
speciesLactobacillus_gasseri0.0610.008420.0427
speciesStreptococcus_mutans0.0610.00860.043
speciesPrevotella_stercorea0.0610.008660.043
speciesRoseburia_unclassified-0.0610.008820.0434
familyEubacteriaceae-0.060.009140.0445
orderBacillales0.060.009340.0446
genusEubacterium-0.060.009360.0446
speciesBacteroides_pectinophilus-0.060.009580.045
speciesErysipelotrichaceae_bacterium_21_30.060.009630.045
speciesEggerthella_unclassified0.060.009960.0461
speciesLactococcus_garvieae0.0590.01030.0472
speciesStreptococcus_gordonii0.0590.01120.0508
familyRuminococcaceae-0.0590.01140.0512
classEpsilonproteobacteria0.0580.01160.0512
orderCampylobacterales0.0580.01160.0512
genusStreptococcus0.0580.01220.0533
familyStreptococcaceae0.0580.01230.0533
genusCoprococcus-0.0580.01250.0536
phylumFirmicutes-0.0570.01350.0574
genusSolobacterium0.0570.01390.0575
speciesSolobacterium_moorei0.0570.01390.0575
phylumViruses_noname0.0570.0140.0575
classViruses_noname0.0570.0140.0575
speciesAnaerostipes_unclassified0.0570.01440.058
speciesEnterobacter_aerogenes0.0560.01460.058
genusButyrivibrio-0.0560.01480.058
speciesEnterobacter_cloacae0.0560.01490.058
speciesStreptococcus_mitis_oralis_pneumoniae0.0560.0150.058
speciesStreptococcus_infantarius0.0560.0150.058
speciesDorea_formicigenerans-0.0560.0150.058
speciesBacteroides_uniformis-0.0550.0170.0652
genusAnaerotruncus-0.0550.01740.0659
speciesParabacteroides_sp_20_30.0550.01750.0659
familySiphoviridae0.0550.01760.0659
speciesDesulfovibrio_desulfuricans-0.0550.01840.0678
speciesCoprococcus_comes-0.0540.01840.0678
genusRothia0.0540.01890.0692
familyMicrococcaceae0.0540.01930.0701
familyPeptostreptococcaceae0.0540.020.0715
genusPrevotella0.0540.020.0715
speciesBacteroides_coprocola0.0540.02030.072
speciesRothia_mucilaginosa0.0540.02060.0726
speciesLachnospiraceae_bacterium_1_4_56FAA0.0530.02140.0746
genusEggerthella0.0530.02150.0746
genusCitrobacter0.0530.02190.0755
genusDesulfovibrio-0.0530.02250.077
speciesClostridium_sp_L2_50-0.0520.02560.0869
speciesVeillonella_atypica0.0520.02580.087
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0510.02850.0951
orderLactobacillales0.0510.02860.0951
speciesCollinsella_intestinalis0.050.0310.102
speciesButyrivibrio_crossotus-0.050.03150.103
classBacilli0.050.03190.104
speciesStreptococcus_lutetiensis0.0490.03420.111
speciesBifidobacterium_adolescentis-0.0490.03470.111
speciesLactobacillus_amylovorus-0.0480.03930.125
speciesDorea_longicatena-0.0480.040.127
genusC2likevirus0.0470.04080.128
genusPeptostreptococcaceae_noname0.0470.04350.135
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0470.04350.135
genusErysipelotrichaceae_noname0.0470.04430.137
genusDorea-0.0460.04470.137
genusAdlercreutzia-0.0460.04690.142
speciesAdlercreutzia_equolifaciens-0.0460.04690.142
speciesClostridiales_bacterium_1_7_47FAA0.0460.04760.143
speciesClostridium_bartlettii0.0460.04780.143
speciesC2likevirus_unclassified0.0460.04870.144
genusVeillonella0.0460.0490.144
speciesRoseburia_hominis-0.0450.04920.144
speciesHaemophilus_sputorum0.0450.050.146
speciesEubacterium_eligens-0.0450.05410.157
speciesPrevotella_copri0.0440.05510.159
speciesEubacterium_ventriosum-0.0440.05630.161
speciesCoprococcus_catus-0.0440.05650.161
speciesBacteroides_coprophilus0.0440.05960.168
speciesCollinsella_unclassified0.0430.06220.175
speciesLactobacillus_fermentum0.0430.06340.177
speciesEggerthella_lenta0.0430.06480.18
genusBlautia0.0420.06710.185
speciesParabacteroides_distasonis-0.0420.06970.191
orderAeromonadales0.0420.070.191
speciesAlistipes_sp_AP110.0410.07680.208
speciesProteus_mirabilis0.0410.07710.208
speciesBacteroides_eggerthii0.040.08460.227
speciesBacteroides_cellulosilyticus-0.040.08630.23
speciesCoprococcus_sp_ART55_1-0.0390.08820.233
genusLactobacillus0.0390.08880.233
speciesAlistipes_shahii-0.0390.08880.233
genusRoseburia-0.0390.09120.238
speciesVeillonella_unclassified0.0390.0930.241
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0380.09650.249
speciesLachnospiraceae_bacterium_6_1_63FAA0.0380.09840.252
speciesCoprobacillus_sp_29_10.0380.10.255
speciesVeillonella_dispar0.0380.1020.259
speciesVeillonella_parvula0.0370.110.278
speciesRuminococcus_obeum-0.0370.1110.279
speciesDesulfovibrio_piger-0.0360.1150.287
speciesAlistipes_senegalensis-0.0360.1220.303
speciesStreptococcus_thermophilus0.0360.1240.306
speciesBacteroides_fluxus-0.0350.1270.312
speciesStreptococcus_sanguinis0.0350.1310.319
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0350.1310.319
familyLactobacillaceae0.0340.1360.329
speciesPeptostreptococcus_anaerobius0.0340.1380.332
speciesEnterococcus_faecium0.0340.140.332
classErysipelotrichia0.0340.1420.332
orderErysipelotrichales0.0340.1420.332
familyErysipelotrichaceae0.0340.1420.332
speciesCitrobacter_freundii0.0340.1420.332
speciesCollinsella_aerofaciens-0.0340.1420.332
speciesBacteroides_caccae0.0340.1430.332
speciesOscillibacter_unclassified-0.0340.1450.335
speciesParabacteroides_johnsonii0.0330.1490.343
speciesParabacteroides_goldsteinii0.0330.1510.346
speciesLactobacillus_crispatus0.0330.1540.351
speciesBacteroides_dorei-0.0330.1560.354
speciesEubacterium_rectale-0.0330.1580.357
genusPeptoniphilus0.0330.1590.357
familyMyoviridae0.0330.160.358
speciesAlistipes_finegoldii-0.0320.1670.372
speciesRuminococcus_sp_JC3040.0320.1710.379
speciesLactobacillus_mucosae0.0310.1750.386
speciesRuminococcus_champanellensis-0.0310.1760.386
speciesBacteroides_finegoldii0.0310.1780.389
speciesLachnospiraceae_bacterium_1_1_57FAA0.0310.1810.394
genusHoldemania-0.0310.1840.398
genusCatenibacterium-0.030.1880.403
speciesCatenibacterium_mitsuokai-0.030.1880.403
speciesClostridium_citroniae0.030.190.406
speciesBacteroides_nordii-0.030.1950.415
genusHaemophilus0.030.20.418
speciesBacteroides_salyersiae0.030.20.418
familyOscillospiraceae-0.030.2010.418
genusSiphoviridae_noname0.030.2010.418
genusOscillibacter-0.030.2010.418
speciesParabacteroides_unclassified-0.0290.2020.418
speciesCitrobacter_unclassified0.0290.2030.418
speciesClostridium_sp_ATCC_BAA_4420.0290.2060.42
genusOxalobacter-0.0290.2070.42
speciesOxalobacter_formigenes-0.0290.2070.42
orderPasteurellales0.0290.2080.42
familyPasteurellaceae0.0290.2080.42
speciesAlistipes_unclassified-0.0290.210.422
familyOxalobacteraceae-0.0290.2110.422
genusBifidobacterium-0.0280.2190.433
orderBifidobacteriales-0.0280.220.433
familyBifidobacteriaceae-0.0280.220.433
speciesBacteroides_clarus0.0280.2210.433
genusCoriobacteriaceae_noname0.0280.2220.433
genusCoprobacter-0.0280.2230.433
speciesCoprobacter_fastidiosus-0.0280.2230.433
genusSutterellaceae_unclassified-0.0280.2270.439
speciesHaemophilus_parainfluenzae0.0280.230.443
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0270.2360.453
speciesBacteroides_sp_3_1_19-0.0270.2430.464
speciesDorea_unclassified0.0270.2460.468
speciesAcidaminococcus_fermentans0.0270.2490.472
speciesSubdoligranulum_sp_4_3_54A2FAA0.0260.260.489
speciesAlistipes_indistinctus-0.0260.260.489
speciesParabacteroides_sp_D13-0.0260.2620.489
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0260.2620.489
speciesCoriobacteriaceae_bacterium_phI0.0260.2640.491
familyStaphylococcaceae0.0260.2660.492
familyClostridiales_noname0.0260.2670.492
familyPodoviridae0.0250.2740.501
speciesKlebsiella_sp_MS_92_3-0.0250.2740.501
familyPrevotellaceae0.0250.2830.516
speciesSlackia_piriformis-0.0250.2840.516
speciesCoprobacillus_sp_D60.0250.2860.517
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0240.2990.539
speciesEubacterium_cylindroides0.0230.3140.564
speciesSutterella_parvirubra0.0230.3220.575
genusOdoribacter-0.0230.3230.575
speciesBacteroides_salanitronis0.0230.3250.577
speciesMegasphaera_unclassified0.0230.330.583
familyLachnospiraceae-0.0220.3340.588
speciesEubacterium_dolichum0.0220.3350.588
speciesCoprococcus_eutactus-0.0210.3580.626
speciesOscillibacter_sp_KLE_1745-0.020.3860.672
speciesLachnospiraceae_bacterium_5_1_57FAA0.020.3910.676
speciesAlistipes_onderdonkii0.020.3910.676
speciesOdoribacter_splanchnicus-0.020.3940.677
speciesRoseburia_intestinalis-0.020.3970.677
speciesCollinsella_tanakaei0.020.3980.677
phylumActinobacteria-0.020.3990.677
classActinobacteria-0.020.3990.677
speciesStreptococcus_pasteurianus0.0190.4010.678
speciesBacteroides_thetaiotaomicron0.0190.4030.679
speciesRuminococcus_lactaris-0.0190.4070.684
speciesBlautia_producta0.0190.410.686
speciesLactococcus_phage_phi70.0190.4160.694
familyLeuconostocaceae0.0190.4240.699
speciesMegamonas_rupellensis0.0190.4240.699
speciesBacteroides_vulgatus-0.0180.4240.699
speciesLactobacillus_acidophilus-0.0180.4250.699
orderCoriobacteriales-0.0180.4310.7
familyCoriobacteriaceae-0.0180.4310.7
genusButyricimonas-0.0180.4330.7
speciesButyricimonas_synergistica-0.0180.4330.7
speciesOlsenella_unclassified-0.0180.4330.7
speciesLactococcus_phage_936_sensu_lato-0.0180.4480.722
speciesBacteroides_intestinalis-0.0170.4570.733
speciesWeissella_cibaria0.0170.4580.733
genusRuminococcaceae_noname0.0170.4650.739
speciesRuminococcaceae_bacterium_D160.0170.4650.739
speciesFusobacterium_varium0.0170.470.744
genusClostridiales_noname0.0170.4740.747
speciesMegamonas_unclassified0.0170.4750.747
genusMegamonas0.0160.4820.756
speciesLactobacillus_plantarum0.0160.4840.756
speciesButyrivibrio_unclassified-0.0160.4860.757
speciesBifidobacterium_pseudocatenulatum0.0160.4880.758
genusLambdalikevirus0.0160.4980.766
speciesClostridium_sp_KLE_17550.0160.50.766
orderPseudomonadales0.0150.5030.766
speciesHoldemania_filiformis-0.0150.5030.766
speciesBacteroides_faecis0.0150.5040.766
speciesLactobacillus_rhamnosus0.0150.5050.766
speciesWeissella_confusa0.0150.5050.766
speciesStreptococcus_australis0.0150.510.772
familyPorphyromonadaceae-0.0150.5130.773
genusParabacteroides-0.0150.5140.773
speciesParaprevotella_unclassified0.0150.5160.773
orderViruses_noname0.0150.5190.773
genusBarnesiella-0.0150.5210.773
speciesBarnesiella_intestinihominis-0.0150.5210.773
speciesDialister_invisus0.0150.5270.777
genusPyramidobacter0.0150.530.777
speciesPyramidobacter_piscolens0.0150.530.777
speciesBacteroides_xylanisolvens-0.0150.530.777
genusParaprevotella0.0140.5330.779
genusWeissella0.0140.5360.781
speciesAcidaminococcus_intestini-0.0140.5390.781
speciesBlautia_hydrogenotrophica0.0140.5410.781
speciesBacteroides_massiliensis0.0140.5410.781
genusLactococcus0.0140.5440.783
speciesBifidobacterium_longum-0.0140.5470.784
speciesParabacteroides_merdae-0.0140.5480.784
speciesAnaerotruncus_colihominis-0.0140.5560.793
speciesKlebsiella_phage_KP360.0130.560.794
speciesMegamonas_hypermegale0.0140.560.794
speciesEubacterium_hallii-0.0130.5640.797
genusOlsenella-0.0130.5670.799
speciesLactococcus_phage_bIL670.0130.5720.804
speciesEnterobacteria_phage_HK5440.0130.5770.808
genusAnaerostipes0.0130.5850.817
genusClostridiaceae_noname0.0130.5890.818
speciesClostridiaceae_bacterium_JC1180.0130.5890.818
speciesStreptococcus_phage_Sfi210.0120.5920.819
familyPropionibacteriaceae-0.0120.5960.82
speciesLactobacillus_casei_paracasei0.0120.5960.82
speciesEubacterium_sp_3_1_31-0.0120.6010.825
speciesRuminococcus_torques0.0120.6040.826
speciesPeptostreptococcaceae_noname_unclassified0.0120.6070.828
genusStaphylococcus0.0120.6090.828
speciesPropionibacterium_freudenreichii-0.0110.6220.843
speciesOdoribacter_laneus-0.0110.6230.843
genusMyoviridae_noname-0.0110.6310.846
speciesRuminococcus_callidus-0.0110.6320.846
speciesLactobacillus_sanfranciscensis-0.0110.6380.846
familyRikenellaceae-0.0110.6390.846
genusAlistipes-0.0110.6390.846
speciesOscillibacter_sp_KLE_1728-0.0110.6410.846
genusDialister0.0110.6460.846
phylumVerrucomicrobia0.0110.6490.846
classVerrucomicrobiae0.0110.6490.846
orderVerrucomicrobiales0.0110.6490.846
familyVerrucomicrobiaceae0.0110.6490.846
genusAkkermansia0.0110.6490.846
speciesAkkermansia_muciniphila0.0110.6490.846
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.010.6580.856
speciesOdoribacter_unclassified-0.010.6630.859
genusTunalikevirus0.010.6640.859
genusRuminococcus-0.010.670.862
genusGordonibacter0.010.6720.862
speciesGordonibacter_pamelaeae0.010.6720.862
speciesParaprevotella_clara0.010.6740.862
speciesErysipelotrichaceae_bacterium_3_1_53-0.010.6810.863
speciesClostridium_asparagiforme0.0090.6850.863
familyVeillonellaceae-0.0090.6860.863
genusTuricibacter-0.0090.6890.863
speciesBacteroides_ovatus0.0090.6890.863
speciesBilophila_wadsworthia0.0090.6930.863
speciesLactobacillus_ruminis-0.0090.6940.863
phylumSynergistetes0.0090.6950.863
classSynergistia0.0090.6950.863
orderSynergistales0.0090.6950.863
familySynergistaceae0.0090.6950.863
speciesLactobacillus_delbrueckii-0.0090.7010.866
speciesHoldemania_sp_AP2-0.0090.7040.866
genusButyricicoccus-0.0090.7080.866
speciesButyricicoccus_pullicaecorum-0.0090.7080.866
speciesBacteroides_sp_2_1_220.0090.7110.866
speciesTuricibacter_sanguinis-0.0090.7120.866
genusAcidaminococcaceae_unclassified0.0080.7140.866
familyAcidaminococcaceae0.0080.7150.866
speciesLactococcus_phage_jm20.0080.7160.866
speciesEubacterium_biforme0.0080.7180.866
speciesRuminococcus_bromii-0.0080.7180.866
speciesAlistipes_sp_HGB5-0.0080.7210.866
speciesBifidobacterium_bifidum0.0080.7210.866
genusBilophila0.0080.7240.866
genusMethanosphaera-0.0080.7290.866
speciesMethanosphaera_stadtmanae-0.0080.7290.866
speciesSutterella_wadsworthensis-0.0080.7290.866
speciesDialister_succinatiphilus-0.0080.730.866
familySuccinivibrionaceae-0.0080.7340.868
familySutterellaceae-0.0070.7620.899
genusAcidaminococcus0.0070.7710.908
speciesMethanobrevibacter_unclassified-0.0070.7740.909
speciesTuricibacter_unclassified-0.0070.7760.909
speciesEggerthella_sp_1_3_56FAA0.0060.7850.911
speciesBilophila_unclassified0.0060.7850.911
classDeltaproteobacteria-0.0060.7920.911
orderDesulfovibrionales-0.0060.7920.911
familyDesulfovibrionaceae-0.0060.7920.911
speciesEubacterium_limosum0.0060.7920.911
genusSuccinatimonas-0.0060.7950.911
speciesSuccinatimonas_hippei-0.0060.7950.911
speciesBifidobacterium_angulatum0.0060.7950.911
genusMethanobrevibacter0.0060.8020.917
speciesBacteroides_stercoris0.0060.8050.918
speciesPrevotella_bivia0.0050.8210.932
speciesLactobacillus_reuteri0.0050.8260.932
speciesAnaerostipes_hadrus-0.0050.8290.932
genusParasutterella-0.0050.8310.932
genusCollinsella-0.0050.8310.932
speciesAcidaminococcus_unclassified-0.0050.8310.932
speciesParasutterella_excrementihominis-0.0050.8310.932
speciesBacteroides_barnesiae-0.0050.8380.935
speciesHoldemania_unclassified-0.0050.8390.935
speciesParaprevotella_xylaniphila0.0050.840.935
genusPseudoflavonifractor-0.0040.8730.967
speciesPseudoflavonifractor_capillosus-0.0040.8730.967
speciesBacteroides_sp_4_3_47FAA0.0030.8920.978
speciesLactococcus_phage_P680-0.0030.8940.978
familyBurkholderiales_noname-0.0030.8970.978
classMethanobacteria0.0030.90.978
orderMethanobacteriales0.0030.90.978
familyMethanobacteriaceae0.0030.90.978
orderBurkholderiales-0.0030.9010.978
speciesBifidobacterium_animalis-0.0030.9040.978
speciesRuminococcus_sp_5_1_39BFAA-0.0030.9040.978
familyBacteroidaceae0.0030.9080.978
genusBacteroides0.0030.9080.978
genusPhascolarctobacterium-0.0030.910.978
speciesPhascolarctobacterium_succinatutens-0.0030.910.978
speciesLactococcus_lactis-0.0020.9260.99
speciesBifidobacterium_breve-0.0020.9290.99
genusPropionibacterium-0.0020.930.99
phylumEuryarchaeota0.0020.9360.99
classBetaproteobacteria0.0020.9430.99
classNegativicutes-0.0020.9440.99
orderSelenomonadales-0.0020.9440.99
genusSlackia0.0020.9470.99
speciesRoseburia_inulinivorans0.0010.950.99
genusLachnospiraceae_noname0.0010.9510.99
speciesMegamonas_funiformis-0.0010.9510.99
genusSutterella-0.0010.9520.99
genusBurkholderiales_noname-0.0010.9530.99
speciesBurkholderiales_bacterium_1_1_47-0.0010.9530.99
genusLeuconostoc0.0010.9540.99
speciesMethanobrevibacter_smithii-0.0010.9540.99
speciesBacteroides_sp_1_1_6-0.0010.9630.992
speciesLeuconostoc_lactis-0.0010.9680.992
speciesMitsuokella_multacida0.0010.9680.992
phylumBacteroidetes-0.0010.970.992
classBacteroidia-0.0010.970.992
orderBacteroidales-0.0010.970.992
speciesClostridium_spiroforme0.0010.9720.992
speciesMegasphaera_elsdenii-0.0010.9730.992
familyViruses_noname-0.0010.9820.995
genusViruses_noname-0.0010.9820.995
speciesAlistipes_putredinis0.00.9860.995
familyBacteroidales_noname0.00.9910.995
genusBacteroidales_noname0.00.9910.995
speciesBacteroidales_bacterium_ph80.00.9910.995
speciesBacteroides_oleiciplenus0.00.9940.995
speciesBifidobacterium_catenulatum0.00.9940.995
speciesClostridium_leptum0.00.9950.995
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.0007987128286780.0003813921166420.00318345095459320710.5123
Crohns diseaseSpain17660.001701440817976.12458489051e-050.00478377698512668122.2145
Liver cirrhosisChina1201140.004928347952660.0002042319968670.02538932916521276042.8634
Colorectal cancerAustria64350.0012744454880.0002235359535530.034043017146520877.06117
Rheumatoid arthritisChina127980.0009760598639530.001095940488290.0516263711233330311.0148
ObesityDenmark1691230.000614815536660.000588519114110.143266280308901829.6537
Ulcerative colitisSpain78660.0005141959998716.12458489051e-050.3147313470941423846.9684
Type II diabetesSweden53920.0009511857523560.001390523820960.6804069660182092170.8466
Type II diabetesChina1831850.000572873979080.0003681478216370.8132416298642684088.7009
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382