MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-05-09 23:02:36 PST
Job id & description: 1809, clbP
Query type: dna
Count queries & homologs: 1, 1
Min % identity & max e-value: 50%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
query919068CompleteK01286COG1680ProteobacteriaEscherichia100.0100.098.31
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEscherichia_coli0.2892.04e-379.63e-35
genusEscherichia0.2861.75e-364.13e-34
orderEnterobacteriales0.2758.31e-349.81e-32
familyEnterobacteriaceae0.2758.31e-349.81e-32
classGammaproteobacteria0.2513.09e-282.92e-26
phylumProteobacteria0.1917.13e-175.61e-15
genusPantoea0.1831.33e-157.85e-14
speciesPantoea_unclassified0.1831.33e-157.85e-14
speciesKlebsiella_pneumoniae0.1656.01e-133.15e-11
genusKlebsiella0.1657.13e-133.37e-11
speciesRuminococcus_gnavus0.1594.14e-121.78e-10
phylumFusobacteria0.156.38e-112.15e-09
classFusobacteriia0.156.38e-112.15e-09
orderFusobacteriales0.156.38e-112.15e-09
familyFusobacteriaceae0.1498.39e-112.64e-09
genusFusobacterium0.1491.07e-103.16e-09
speciesFusobacterium_ulcerans0.1481.16e-103.22e-09
speciesClostridium_hathewayi0.1471.83e-104.57e-09
genusCoprobacillus0.1471.84e-104.57e-09
speciesCoprobacillus_unclassified0.1435.84e-101.38e-08
speciesClostridium_bolteae0.141.19e-092.67e-08
genusMorganella0.1391.46e-093e-08
speciesMorganella_morganii0.1391.46e-093e-08
speciesClostridium_nexile0.1391.77e-093.36e-08
speciesClostridium_ramosum0.1391.78e-093.36e-08
speciesEubacterium_ramulus-0.1382.12e-093.85e-08
speciesClostridium_symbiosum0.1321.01e-081.77e-07
genusFaecalibacterium-0.1282.88e-084.69e-07
speciesFaecalibacterium_prausnitzii-0.1282.88e-084.69e-07
speciesAnaerostipes_unclassified0.1283.15e-084.96e-07
speciesEscherichia_unclassified0.1264.5e-086.85e-07
speciesLachnospiraceae_bacterium_2_1_58FAA0.1164.74e-076.94e-06
genusCoprococcus-0.1164.85e-076.94e-06
speciesFusobacterium_nucleatum0.1165.48e-077.61e-06
speciesCoprococcus_comes-0.1147.41e-079.99e-06
genusEubacterium-0.1148.25e-071.08e-05
familyEubacteriaceae-0.1148.44e-071.08e-05
speciesErysipelotrichaceae_bacterium_2_2_44A0.1138.66e-071.08e-05
speciesDorea_formicigenerans-0.1111.61e-061.95e-05
classClostridia-0.1083.01e-063.47e-05
orderClostridiales-0.1083.01e-063.47e-05
speciesMegasphaera_micronuciformis0.1073.57e-064.01e-05
speciesRoseburia_hominis-0.1064e-064.39e-05
speciesLactobacillus_vaginalis0.1046.05e-066.49e-05
familyRuminococcaceae-0.1047.03e-067.37e-05
speciesClostridiales_bacterium_1_7_47FAA0.1037.54e-067.74e-05
speciesSubdoligranulum_unclassified-0.1029.08e-069.12e-05
speciesBacteroides_fragilis0.1029.5e-069.34e-05
familyClostridiaceae0.1011.22e-050.000118
genusClostridium0.11.43e-050.000135
genusSubdoligranulum-0.0991.82e-050.000168
speciesEubacterium_rectale-0.0991.97e-050.000179
speciesCoprococcus_catus-0.0972.43e-050.000216
speciesEubacterium_siraeum-0.0972.5e-050.000219
phylumFirmicutes-0.0972.56e-050.00022
speciesEggerthella_unclassified0.0972.72e-050.000229
speciesErysipelotrichaceae_bacterium_6_1_450.0953.6e-050.000298
speciesEnterococcus_faecalis0.0954.06e-050.00033
speciesEubacterium_eligens-0.0935.29e-050.000423
speciesAlistipes_shahii-0.0935.97e-050.00047
genusFlavonifractor0.0926.4e-050.000487
speciesFlavonifractor_plautii0.0926.4e-050.000487
speciesDorea_longicatena-0.0926.51e-050.000488
genusAdlercreutzia-0.0927.05e-050.000512
speciesAdlercreutzia_equolifaciens-0.0927.05e-050.000512
speciesClostridium_sp_L2_50-0.0918.1e-050.000579
familyClostridiales_Family_XI_Incertae_Sedis0.099.76e-050.000688
familyEnterococcaceae0.0890.0001150.000798
speciesCollinsella_aerofaciens-0.0880.0001290.000882
genusMegasphaera0.0880.000150.00101
speciesLachnospiraceae_bacterium_6_1_63FAA0.0870.0001720.00114
genusRoseburia-0.0870.0001770.00115
genusDorea-0.0870.0001780.00115
speciesClostridium_clostridioforme0.0860.0001820.00116
genusEggerthella0.0850.0002190.00138
genusEnterococcus0.0850.0002260.0014
speciesLactobacillus_salivarius0.0840.0002720.00167
speciesPrevotella_buccae0.0830.0003090.00186
speciesAlistipes_senegalensis-0.0830.0003120.00186
speciesFusobacterium_mortiferum0.0820.0003830.00226
speciesRuminococcus_obeum-0.0820.0003880.00226
genusProteus0.0820.0003990.0023
speciesAlistipes_finegoldii-0.0810.0004680.00266
speciesBacteroides_pectinophilus-0.080.00050.00281
genusButyrivibrio-0.080.0005240.00291
genusBarnesiella-0.080.0005390.00292
speciesBarnesiella_intestinihominis-0.080.0005390.00292
speciesStreptococcus_anginosus0.080.000560.003
speciesGemella_morbillorum0.080.0005670.00301
speciesEubacterium_hallii-0.0790.0006360.00334
speciesAggregatibacter_segnis0.0790.0006630.00344
genusCoprobacter-0.0770.0008640.00439
speciesCoprobacter_fastidiosus-0.0770.0008640.00439
speciesEubacterium_ventriosum-0.0770.0009070.00455
speciesFusobacterium_varium0.0760.0009740.00484
speciesBifidobacterium_dentium0.0760.0009910.00487
speciesClostridium_citroniae0.0750.001120.00545
genusParvimonas0.0750.001210.00583
speciesParvimonas_unclassified0.0750.001240.00585
speciesAnaerotruncus_unclassified-0.0750.001240.00585
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0740.001360.00636
speciesBifidobacterium_adolescentis-0.0740.001390.0064
familyRikenellaceae-0.0740.001410.0064
genusAlistipes-0.0740.001410.0064
speciesKlebsiella_unclassified0.0740.001430.00643
speciesClostridium_perfringens0.0730.001560.00695
speciesSutterella_wadsworthensis-0.0730.001580.00697
speciesRoseburia_intestinalis-0.0730.001650.00721
speciesDesulfovibrio_piger-0.0720.001710.0074
speciesVeillonella_parvula0.0720.001860.00798
genusCitrobacter0.070.002530.0108
genusVeillonella0.0690.002680.0113
speciesPeptostreptococcus_stomatis0.0690.002760.0115
speciesKlebsiella_oxytoca0.0690.002890.012
speciesBlautia_producta0.0690.002930.012
speciesVeillonella_atypica0.0680.003190.013
genusPeptostreptococcus0.0680.003230.013
speciesAlistipes_putredinis-0.0670.003540.0142
familyLachnospiraceae-0.0670.003880.0154
genusAggregatibacter0.0670.0040.0157
speciesAlistipes_indistinctus-0.0650.004770.0184
orderCaudovirales0.0650.00480.0184
familyBacteroidales_noname-0.0650.004870.0184
genusBacteroidales_noname-0.0650.004870.0184
speciesBacteroidales_bacterium_ph8-0.0650.004870.0184
speciesCitrobacter_unclassified0.0650.005260.0197
genusCollinsella-0.0640.005770.0214
speciesProteus_mirabilis0.0640.005930.0219
speciesCoprococcus_sp_ART55_1-0.0630.006290.0229
speciesErysipelotrichaceae_bacterium_21_30.0630.006310.0229
speciesRuminococcus_lactaris-0.0630.00640.0231
speciesAnaerostipes_hadrus-0.0630.006590.0234
genusSutterella-0.0630.00660.0234
familyClostridiales_noname0.0630.006680.0235
genusDesulfovibrio-0.0630.006820.0238
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0620.007560.0262
genusMitsuokella-0.0610.007840.027
genusClostridiales_noname0.0610.008270.0283
speciesButyrivibrio_crossotus-0.060.008890.03
speciesMitsuokella_unclassified-0.060.008910.03
speciesLactobacillus_crispatus0.060.009220.0309
speciesLachnospiraceae_bacterium_8_1_57FAA-0.060.009510.0316
speciesEnterobacter_aerogenes0.0590.01130.0373
speciesBacteroides_cellulosilyticus-0.0580.01240.0404
speciesBacteroides_thetaiotaomicron0.0580.01240.0404
speciesOscillibacter_unclassified-0.0580.01260.0407
familySiphoviridae0.0570.01290.0414
speciesHaemophilus_paraphrohaemolyticus0.0570.01360.0434
genusOdoribacter-0.0570.0140.0441
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0570.0140.0441
genusEnterobacter0.0570.01440.045
genusAnaerotruncus-0.0560.01490.0463
speciesLachnospiraceae_bacterium_1_4_56FAA0.0560.0150.0463
familyOscillospiraceae-0.0550.01790.0545
genusOscillibacter-0.0550.01790.0545
speciesEggerthella_lenta0.0540.01850.056
genusRuminococcus-0.0540.0190.0571
speciesPorphyromonas_uenonis0.0540.01980.0591
speciesVeillonella_dispar0.0540.02050.0609
classErysipelotrichia0.0530.02120.0618
orderErysipelotrichales0.0530.02120.0618
familyErysipelotrichaceae0.0530.02120.0618
speciesParabacteroides_sp_20_30.0530.02220.0643
speciesRuminococcus_sp_5_1_39BFAA-0.0530.0230.0662
speciesEnterobacter_cloacae0.0520.02580.0738
speciesVeillonella_unclassified0.0510.02770.0786
genusErysipelotrichaceae_noname0.0510.02780.0786
speciesRuminococcus_champanellensis-0.050.02950.0829
genusActinomyces0.050.02970.0829
speciesParabacteroides_merdae-0.050.03060.085
speciesCitrobacter_freundii0.050.03110.0858
speciesEubacterium_limosum0.050.03220.0884
speciesBifidobacterium_breve0.0490.03350.0914
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0490.03380.0917
speciesAlistipes_onderdonkii-0.0490.0340.0917
familyActinomycetaceae0.0490.03470.0931
speciesEubacterium_sp_3_1_310.0490.03520.0939
familyPeptostreptococcaceae0.0490.03550.0941
speciesLactobacillus_mucosae0.0480.03640.096
speciesPorphyromonas_asaccharolytica0.0480.03660.096
genusSolobacterium0.0480.03710.0962
speciesSolobacterium_moorei0.0480.03710.0962
speciesStreptococcus_lutetiensis0.0480.03780.0975
speciesLactobacillus_fermentum0.0480.03830.0977
speciesOdoribacter_splanchnicus-0.0480.03830.0977
speciesStreptococcus_phage_Sfi210.0480.03950.1
genusOxalobacter-0.0470.040.1
speciesOxalobacter_formigenes-0.0470.040.1
speciesRuminococcus_callidus-0.0470.04090.102
speciesStreptococcus_mutans0.0470.04190.104
speciesCoprococcus_eutactus-0.0470.0420.104
speciesStreptococcus_mitis_oralis_pneumoniae0.0470.04290.105
orderCoriobacteriales-0.0470.04320.105
familyCoriobacteriaceae-0.0470.04320.105
genusBlautia0.0460.04450.108
familyOxalobacteraceae-0.0460.04810.116
phylumViruses_noname0.0450.04920.117
classViruses_noname0.0450.04920.117
speciesClostridium_bartlettii0.0450.04950.117
speciesLachnospiraceae_bacterium_5_1_57FAA0.0450.05210.123
speciesClostridium_leptum-0.0440.05640.132
speciesMegasphaera_unclassified0.0440.05720.134
speciesMethanobrevibacter_unclassified-0.0440.05890.137
speciesClostridium_sp_ATCC_BAA_4420.0430.06150.142
genusHoldemania-0.0430.06380.147
genusLactobacillus0.0420.06720.154
speciesCoprobacillus_sp_29_10.0420.06760.154
genusPeptostreptococcaceae_noname0.0420.07080.161
familyCampylobacteraceae0.0420.07220.163
speciesBacteroides_salanitronis0.0410.07340.165
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0410.07460.167
speciesCollinsella_unclassified0.0410.07760.173
speciesClostridium_asparagiforme0.0410.07850.174
familyPodoviridae0.040.080.176
orderLactobacillales0.040.08160.179
classBacilli0.040.0830.181
speciesDorea_unclassified0.040.08340.181
genusCampylobacter0.040.08630.186
speciesEubacterium_biforme-0.040.08630.186
speciesSutterella_parvirubra0.040.08650.186
classEpsilonproteobacteria0.0390.08850.188
orderCampylobacterales0.0390.08850.188
genusParaprevotella-0.0390.0920.194
speciesCampylobacter_concisus0.0390.09230.194
speciesHoldemania_filiformis-0.0390.09230.194
speciesSlackia_piriformis-0.0390.09410.196
speciesLactococcus_lactis-0.0390.09410.196
familyLactobacillaceae0.0390.09450.196
speciesParaprevotella_unclassified-0.0380.09850.203
speciesStreptococcus_infantarius0.0380.09870.203
familyBacteroidaceae0.0380.1010.204
genusActinobacillus0.0380.1010.204
genusBacteroides0.0380.1010.204
speciesActinobacillus_unclassified0.0380.1010.204
speciesBacteroides_sp_3_1_19-0.0380.1020.205
speciesPropionibacterium_freudenreichii-0.0380.1030.206
speciesLactobacillus_gasseri0.0370.1050.208
speciesRoseburia_inulinivorans-0.0380.1050.208
speciesBacteroides_massiliensis-0.0370.1060.209
speciesButyrivibrio_unclassified-0.0370.1070.21
familyPropionibacteriaceae-0.0370.1080.211
genusCatenibacterium-0.0370.1090.211
speciesLactobacillus_plantarum0.0370.1090.211
speciesCatenibacterium_mitsuokai-0.0370.1090.211
genusGordonibacter-0.0370.110.211
speciesGordonibacter_pamelaeae-0.0370.110.211
genusLambdalikevirus0.0370.1110.212
speciesBacteroides_plebeius0.0370.1140.217
speciesCollinsella_intestinalis0.0360.1170.222
speciesPrevotella_stercorea0.0350.1250.236
speciesBifidobacterium_bifidum0.0350.1290.243
genusPorphyromonas0.0350.130.243
speciesDesulfovibrio_desulfuricans-0.0340.1390.259
speciesStreptococcus_pasteurianus0.0340.1410.262
speciesStreptococcus_vestibularis0.0340.1430.265
genusCoriobacteriaceae_noname0.0340.1450.267
orderActinomycetales0.0340.1460.268
speciesBacteroides_uniformis-0.0340.1470.269
speciesRoseburia_unclassified-0.0330.1490.272
familySutterellaceae-0.0330.1560.283
speciesStreptococcus_gordonii0.0330.1580.286
speciesLactobacillus_sanfranciscensis0.0320.1620.292
speciesLeuconostoc_lactis-0.0320.1630.293
speciesCoriobacteriaceae_bacterium_phI0.0320.1660.297
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0320.1690.299
phylumVerrucomicrobia-0.0320.1730.299
classVerrucomicrobiae-0.0320.1730.299
orderVerrucomicrobiales-0.0320.1730.299
familyBacillales_noname0.0320.1730.299
familyVerrucomicrobiaceae-0.0320.1730.299
genusGemella0.0320.1730.299
genusAkkermansia-0.0320.1730.299
speciesAkkermansia_muciniphila-0.0320.1730.299
speciesParabacteroides_unclassified0.0310.1740.3
speciesParabacteroides_distasonis-0.0310.1810.311
orderAeromonadales0.0310.1820.311
speciesBacteroides_ovatus0.0310.1870.319
orderBurkholderiales-0.030.1890.321
speciesParabacteroides_goldsteinii0.030.1930.327
genusStreptococcus0.030.1940.327
speciesC2likevirus_unclassified0.030.1960.329
speciesSubdoligranulum_sp_4_3_54A2FAA0.030.1970.33
speciesBacteroides_vulgatus-0.030.1980.33
classMethanobacteria-0.030.2020.333
orderMethanobacteriales-0.030.2020.333
familyMethanobacteriaceae-0.030.2020.333
genusPrevotella0.0290.2040.335
phylumEuryarchaeota-0.0290.2060.336
speciesBacteroides_coprophilus0.0290.2060.336
speciesClostridium_sp_KLE_17550.0290.2090.339
speciesPeptostreptococcaceae_noname_unclassified-0.0290.2090.339
speciesParabacteroides_sp_D13-0.0290.2110.341
speciesMethanobrevibacter_smithii-0.0290.2130.343
speciesBacteroides_fluxus-0.0290.2140.344
speciesParaprevotella_clara-0.0290.2180.349
speciesAlistipes_unclassified-0.0280.2230.356
familyStreptococcaceae0.0280.2250.358
genusC2likevirus0.0280.2260.358
speciesDialister_succinatiphilus-0.0280.2270.358
genusBifidobacterium-0.0280.2330.367
classBetaproteobacteria-0.0280.2340.367
orderPseudomonadales0.0270.2360.368
speciesRothia_mucilaginosa0.0270.2360.368
orderBacillales0.0270.2390.371
speciesStreptococcus_australis0.0270.2470.382
genusPeptoniphilus0.0270.2490.384
genusMethanobrevibacter-0.0270.2520.387
speciesBacteroides_dorei-0.0260.2530.388
speciesHoldemania_unclassified-0.0260.2570.393
orderBifidobacteriales-0.0260.2620.398
familyBifidobacteriaceae-0.0260.2620.398
speciesRuminococcus_bromii-0.0250.2780.421
speciesOdoribacter_unclassified-0.0250.280.422
phylumActinobacteria-0.0250.2840.426
classActinobacteria-0.0250.2840.426
speciesBifidobacterium_angulatum0.0250.2850.426
speciesLactobacillus_oris0.0250.2880.429
speciesBacteroides_nordii-0.0250.2890.429
speciesParaprevotella_xylaniphila-0.0240.2910.431
speciesPrevotella_copri0.0240.2960.437
speciesCoprobacillus_sp_D60.0240.2970.437
familyVeillonellaceae0.0240.2990.438
speciesParabacteroides_johnsonii0.0240.3030.443
genusLactococcus-0.0240.3040.443
genusPropionibacterium-0.0240.3080.447
genusSiphoviridae_noname0.0240.3090.447
speciesBifidobacterium_longum-0.0230.3110.448
speciesStreptococcus_salivarius0.0230.3120.448
speciesHaemophilus_sputorum0.0230.3130.448
speciesEnterococcus_faecium0.0230.3130.448
genusBilophila0.0230.3150.449
speciesBilophila_unclassified0.0230.3180.452
speciesOlsenella_unclassified-0.0230.3190.452
speciesBacteroides_caccae0.0230.320.452
speciesCollinsella_tanakaei0.0230.3270.461
genusLachnospiraceae_noname0.0220.3380.475
speciesBacteroides_intestinalis-0.0220.3430.48
genusButyricimonas-0.0220.3450.48
speciesButyricimonas_synergistica-0.0220.3450.48
speciesEubacterium_dolichum0.0220.3460.48
genusSutterellaceae_unclassified-0.0220.3470.48
classNegativicutes0.0220.3510.483
orderSelenomonadales0.0220.3510.483
genusTunalikevirus0.0220.3520.483
phylumBacteroidetes0.0210.3690.502
classBacteroidia0.0210.3690.502
orderBacteroidales0.0210.3690.502
genusMegamonas0.0210.3740.507
speciesMegamonas_unclassified0.0210.3750.507
genusPseudoflavonifractor-0.020.3790.51
speciesPseudoflavonifractor_capillosus-0.020.3790.51
speciesOscillibacter_sp_KLE_1745-0.020.3930.527
genusTuricibacter-0.020.3960.529
speciesBacteroides_eggerthii-0.020.3990.532
genusPhascolarctobacterium-0.0190.4020.533
speciesPhascolarctobacterium_succinatutens-0.0190.4020.533
speciesEggerthella_sp_1_3_56FAA-0.0190.4060.537
speciesBifidobacterium_pseudocatenulatum0.0190.4070.537
speciesMitsuokella_multacida-0.0190.4140.544
speciesBacteroides_sp_2_1_22-0.0190.4150.544
genusMethanosphaera-0.0190.4210.549
speciesMethanosphaera_stadtmanae-0.0190.4210.549
genusClostridiaceae_noname0.0180.4260.551
speciesClostridiaceae_bacterium_JC1180.0180.4260.551
speciesAcidaminococcus_unclassified-0.0180.4260.551
genusHaemophilus0.0180.4320.557
speciesDialister_invisus0.0180.4390.565
familyMicrococcaceae0.0180.4430.568
speciesPeptostreptococcus_anaerobius0.0170.4540.581
genusRothia0.0170.4590.586
speciesTuricibacter_unclassified-0.0170.4620.588
speciesStreptococcus_parasanguinis0.0170.4680.593
familyMyoviridae0.0170.4690.593
genusParabacteroides0.0170.470.593
orderPasteurellales0.0170.4740.595
familyPasteurellaceae0.0170.4740.595
speciesHaemophilus_parainfluenzae0.0170.4760.596
genusWeissella0.0160.4880.609
speciesLactobacillus_acidophilus-0.0150.5050.627
speciesWeissella_cibaria0.0150.5050.627
speciesErysipelotrichaceae_bacterium_3_1_530.0150.5080.629
speciesTuricibacter_sanguinis-0.0150.5160.638
speciesLactococcus_phage_936_sensu_lato-0.0150.5190.64
speciesRuminococcus_torques-0.0150.5230.643
speciesAlistipes_sp_AP110.0150.5270.646
speciesBacteroides_coprocola-0.0140.5320.651
speciesLactobacillus_casei_paracasei0.0140.5450.664
speciesEubacterium_cylindroides-0.0140.5460.664
speciesLactobacillus_delbrueckii-0.0140.5470.664
speciesBilophila_wadsworthia0.0140.5490.664
speciesBacteroides_finegoldii-0.0140.5550.67
speciesLachnospiraceae_bacterium_1_1_57FAA0.0130.5850.704
speciesLactococcus_garvieae0.0130.5860.704
genusRuminococcaceae_noname-0.0120.6010.718
speciesRuminococcaceae_bacterium_D16-0.0120.6010.718
speciesPrevotella_bivia0.0120.6060.722
familySuccinivibrionaceae-0.0120.6090.723
familyAcidaminococcaceae-0.0120.610.723
speciesStreptococcus_sanguinis0.0120.6140.723
speciesBacteroides_stercoris0.0120.6150.723
speciesKlebsiella_phage_KP360.0120.6160.723
speciesLactococcus_phage_phi70.0120.6160.723
genusLeuconostoc-0.0110.6250.732
familyLeuconostocaceae0.0110.6280.732
speciesHoldemania_sp_AP20.0110.6280.732
speciesBacteroides_barnesiae-0.0110.6340.733
genusPyramidobacter0.0110.6360.733
speciesPyramidobacter_piscolens0.0110.6360.733
speciesBacteroides_sp_4_3_47FAA-0.0110.6370.733
speciesOdoribacter_laneus-0.0110.6370.733
speciesMegamonas_funiformis-0.0110.6390.734
speciesMegamonas_hypermegale-0.0110.6470.741
familyPrevotellaceae-0.010.6660.757
genusSuccinatimonas-0.010.6660.757
speciesSuccinatimonas_hippei-0.010.6660.757
speciesStreptococcus_thermophilus-0.010.6680.758
orderViruses_noname-0.010.6740.762
genusButyricicoccus-0.010.6780.762
speciesEnterobacteria_phage_HK5440.010.6780.762
speciesButyricicoccus_pullicaecorum-0.010.6780.762
speciesMegasphaera_elsdenii0.0090.6990.784
speciesBacteroides_xylanisolvens-0.0080.7380.825
familyBurkholderiales_noname-0.0080.740.826
speciesLachnospiraceae_bacterium_2_1_46FAA0.0070.7490.834
genusAcidaminococcaceae_unclassified-0.0070.7530.836
speciesLactobacillus_reuteri0.0070.7580.837
genusStaphylococcus-0.0070.7590.837
speciesWeissella_confusa0.0070.7590.837
speciesOscillibacter_sp_KLE_1728-0.0070.7650.839
familyViruses_noname-0.0070.7660.839
genusViruses_noname-0.0070.7660.839
speciesLactococcus_phage_P680-0.0070.770.841
genusSlackia-0.0070.7740.844
speciesBifidobacterium_catenulatum-0.0070.7760.844
speciesBacteroides_clarus-0.0060.780.846
speciesLactococcus_phage_jm2-0.0060.7940.855
genusBurkholderiales_noname-0.0060.7960.855
speciesBurkholderiales_bacterium_1_1_47-0.0060.7960.855
phylumSynergistetes0.0060.8030.855
classSynergistia0.0060.8030.855
orderSynergistales0.0060.8030.855
familySynergistaceae0.0060.8030.855
speciesBacteroides_sp_1_1_60.0060.8040.855
speciesLactobacillus_amylovorus-0.0060.8040.855
speciesMegamonas_rupellensis0.0050.8140.863
familyStaphylococcaceae0.0050.8210.869
speciesClostridium_spiroforme0.0050.830.876
speciesBlautia_hydrogenotrophica-0.0050.8410.886
speciesAcidaminococcus_intestini0.0040.8550.899
genusParasutterella-0.0040.860.9
speciesParasutterella_excrementihominis-0.0040.860.9
genusOlsenella-0.0040.8640.902
speciesBacteroides_oleiciplenus-0.0040.8720.909
genusDialister0.0040.8740.909
speciesBacteroides_salyersiae-0.0040.8770.91
speciesKlebsiella_sp_MS_92_3-0.0030.8930.924
speciesLactobacillus_ruminis0.0030.9040.934
speciesBacteroides_faecis0.0020.9180.946
speciesLactococcus_phage_bIL67-0.0020.9290.955
genusAcidaminococcus-0.0020.9350.959
familyPorphyromonadaceae-0.0020.9380.96
genusMyoviridae_noname-0.0010.9530.974
speciesAnaerotruncus_colihominis0.0010.9550.974
speciesLactobacillus_rhamnosus-0.0010.9580.974
classDeltaproteobacteria-0.0010.9640.974
orderDesulfovibrionales-0.0010.9640.974
familyDesulfovibrionaceae-0.0010.9640.974
speciesAlistipes_sp_HGB50.0010.9670.975
speciesAcidaminococcus_fermentans0.0010.970.976
genusAnaerostipes-0.0010.980.981
speciesBifidobacterium_animalis0.0010.980.981
speciesRuminococcus_sp_JC304-0.0010.9810.981
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.004848585099020.0001705254990437.46221043524e-05490716.4836
Type II diabetesDenmark752770.0008703505970330.0005623269538230.0010346968885425298.2899
Crohns diseaseSpain17660.001975664322146.76760344816e-050.00737143952727755825.1305
Colorectal cancerAustria64350.001297622434630.0002466415163730.0710024372997386113.0633
Ulcerative colitisSpain78660.0006098852658976.76760344816e-050.0737330466013595419.6411
ObesityDenmark1691230.0009131193926220.0007088764819730.157899124026955231.4097
Rheumatoid arthritisChina127980.001016653644940.001143741840180.231060630979992233.0877
Type II diabetesChina1831850.0006995069845090.0004746340143120.324170149871692455.9305
Type II diabetesSweden53920.001341604070150.001609666902960.5520078617431741558.9739
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382