MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-05-15 22:15:37 PST
Job id & description: 1810, tagU
Query type: protein
Count queries & homologs: 1, 1
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
tagU999868CompleteunknownCOG1316FirmicutesBlautia100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesRuminococcus_gnavus0.5622.79e-1561.32e-153
speciesLachnospiraceae_bacterium_2_1_58FAA0.3413.73e-528.8e-50
speciesCoprobacillus_unclassified0.3082.18e-423.43e-40
speciesSubdoligranulum_unclassified-0.2861.19e-361.4e-34
genusCoprobacillus0.2852.4e-362.27e-34
speciesClostridium_bolteae0.2791.06e-347.28e-33
genusSubdoligranulum-0.2791.08e-347.28e-33
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2741.22e-337.2e-32
speciesClostridium_ramosum0.2692.73e-321.43e-30
genusFusobacterium0.2571.44e-296.8e-28
phylumFusobacteria0.2562.33e-297.68e-28
classFusobacteriia0.2562.33e-297.68e-28
orderFusobacteriales0.2562.33e-297.68e-28
speciesLachnospiraceae_bacterium_1_4_56FAA0.2562.39e-297.68e-28
familyFusobacteriaceae0.2562.44e-297.68e-28
speciesClostridium_nexile0.2513.6e-281.06e-26
speciesEggerthella_unclassified0.2431.28e-263.55e-25
genusEggerthella0.2431.63e-264.27e-25
speciesAlistipes_senegalensis-0.2423.02e-267.5e-25
speciesClostridium_symbiosum0.2414.8e-261.13e-24
genusCoprococcus-0.2281.52e-233.42e-22
classMethanobacteria-0.2256.62e-231.3e-21
orderMethanobacteriales-0.2256.62e-231.3e-21
familyMethanobacteriaceae-0.2256.62e-231.3e-21
genusMethanobrevibacter-0.2222.17e-224.1e-21
speciesEubacterium_siraeum-0.2213.83e-226.95e-21
speciesMethanobrevibacter_smithii-0.2214.43e-227.41e-21
genusOxalobacter-0.2214.55e-227.41e-21
speciesOxalobacter_formigenes-0.2214.55e-227.41e-21
speciesBlautia_producta0.2198.58e-221.35e-20
speciesLachnospiraceae_bacterium_6_1_63FAA0.2181.36e-212.06e-20
phylumEuryarchaeota-0.2181.4e-212.06e-20
familyBacteroidales_noname-0.2155.25e-217.08e-20
genusBacteroidales_noname-0.2155.25e-217.08e-20
speciesBacteroidales_bacterium_ph8-0.2155.25e-217.08e-20
familyOxalobacteraceae-0.2147.64e-211e-19
speciesCoprococcus_catus-0.2149.95e-211.27e-19
genusFlavonifractor0.2131.46e-201.77e-19
speciesFlavonifractor_plautii0.2131.46e-201.77e-19
genusBlautia0.2113.33e-203.93e-19
speciesRoseburia_hominis-0.2096.74e-207.76e-19
speciesClostridium_clostridioforme0.2062.5e-192.81e-18
speciesCoprococcus_sp_ART55_1-0.22.45e-182.69e-17
speciesEubacterium_dolichum0.22.81e-183.01e-17
speciesAnaerotruncus_unclassified-0.1933.55e-173.72e-16
speciesEubacterium_eligens-0.1891.6e-161.64e-15
speciesClostridiales_bacterium_1_7_47FAA0.1856.54e-166.57e-15
familyRuminococcaceae-0.184.9e-154.82e-14
genusButyrivibrio-0.1795.41e-155.21e-14
speciesLachnospiraceae_bacterium_5_1_57FAA0.1787.68e-157.25e-14
speciesAlistipes_shahii-0.1762.01e-141.86e-13
familyBacteroidaceae0.1743.22e-142.87e-13
genusBacteroides0.1743.22e-142.87e-13
speciesStreptococcus_mitis_oralis_pneumoniae0.1735.15e-144.5e-13
speciesErysipelotrichaceae_bacterium_2_2_44A0.1674.14e-133.54e-12
speciesAnaerostipes_unclassified0.1674.2e-133.54e-12
speciesEggerthella_lenta0.1665.08e-134.21e-12
speciesMethanobrevibacter_unclassified-0.1657.35e-135.98e-12
familyClostridiaceae0.1657.7e-136.16e-12
genusDesulfovibrio-0.1612.23e-121.75e-11
genusClostridium0.1612.29e-121.77e-11
speciesOlsenella_unclassified-0.1612.54e-121.93e-11
speciesFusobacterium_nucleatum0.1594.23e-123.17e-11
speciesBifidobacterium_adolescentis-0.1585.96e-124.4e-11
genusOdoribacter-0.1577.98e-125.79e-11
speciesButyrivibrio_crossotus-0.1561.03e-117.37e-11
speciesEubacterium_biforme-0.1561.33e-119.37e-11
speciesOdoribacter_splanchnicus-0.1542.47e-111.71e-10
phylumVerrucomicrobia-0.1533.17e-112.02e-10
classVerrucomicrobiae-0.1533.17e-112.02e-10
orderVerrucomicrobiales-0.1533.17e-112.02e-10
familyVerrucomicrobiaceae-0.1533.17e-112.02e-10
genusAkkermansia-0.1533.17e-112.02e-10
speciesAkkermansia_muciniphila-0.1533.17e-112.02e-10
speciesClostridium_hathewayi0.1523.48e-112.19e-10
speciesFusobacterium_mortiferum0.1523.72e-112.31e-10
speciesCoprococcus_comes-0.1514.77e-112.92e-10
speciesFusobacterium_ulcerans0.1514.99e-113.02e-10
speciesCoprococcus_eutactus-0.158.13e-114.86e-10
speciesClostridium_citroniae0.1499.33e-115.5e-10
speciesMegasphaera_micronuciformis0.1481.23e-107.17e-10
familyRikenellaceae-0.1471.5e-108.53e-10
genusAlistipes-0.1471.5e-108.53e-10
speciesAlistipes_indistinctus-0.1461.96e-101.1e-09
genusMitsuokella-0.1462.02e-101.12e-09
genusAnaerotruncus-0.1443.61e-101.98e-09
familyBacillales_noname0.1444.01e-102.15e-09
genusGemella0.1444.01e-102.15e-09
orderBacillales0.1444.42e-102.34e-09
speciesMitsuokella_unclassified-0.1434.56e-102.39e-09
genusBarnesiella-0.1435.08e-102.61e-09
speciesBarnesiella_intestinihominis-0.1435.08e-102.61e-09
speciesBacteroides_ovatus0.1427.62e-103.87e-09
genusCoprobacter-0.1418.98e-104.46e-09
speciesCoprobacter_fastidiosus-0.1418.98e-104.46e-09
speciesClostridium_sp_L2_50-0.141.32e-096.47e-09
speciesAlistipes_putredinis-0.141.33e-096.47e-09
speciesRuminococcus_callidus-0.1372.56e-091.23e-08
speciesPrevotella_buccae0.1363.78e-091.8e-08
speciesDesulfovibrio_piger-0.1354.12e-091.94e-08
speciesBacteroides_pectinophilus-0.1354.49e-092.1e-08
genusOlsenella-0.1345.29e-092.45e-08
speciesCollinsella_aerofaciens-0.1346.66e-093.05e-08
speciesBacteroides_fragilis0.1338.2e-093.72e-08
speciesEubacterium_sp_3_1_310.131.57e-087.06e-08
familyClostridiales_noname0.1292.05e-089.13e-08
speciesEubacterium_ventriosum-0.1292.35e-081.04e-07
familyEubacteriaceae-0.1282.66e-081.16e-07
genusEubacterium-0.1282.67e-081.16e-07
speciesRuminococcus_lactaris-0.1282.91e-081.25e-07
speciesRuminococcus_champanellensis-0.1264.16e-081.77e-07
speciesBlautia_hydrogenotrophica0.1264.5e-081.9e-07
genusClostridiaceae_noname0.1264.61e-081.91e-07
speciesClostridiaceae_bacterium_JC1180.1264.61e-081.91e-07
genusActinomyces0.1246.65e-082.73e-07
genusSolobacterium0.1247.02e-082.83e-07
speciesSolobacterium_moorei0.1247.02e-082.83e-07
speciesAlistipes_finegoldii-0.1248.28e-083.31e-07
speciesStreptococcus_sanguinis0.1238.8e-083.49e-07
speciesDorea_longicatena-0.1221.08e-074.25e-07
classClostridia-0.1221.14e-074.41e-07
orderClostridiales-0.1221.14e-074.41e-07
familyActinomycetaceae0.1221.21e-074.64e-07
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1211.37e-075.21e-07
genusPseudoflavonifractor-0.1182.97e-071.11e-06
speciesPseudoflavonifractor_capillosus-0.1182.97e-071.11e-06
speciesVeillonella_dispar0.1183.1e-071.15e-06
speciesEubacterium_ramulus-0.1173.52e-071.3e-06
genusFaecalibacterium-0.1164.91e-071.78e-06
speciesFaecalibacterium_prausnitzii-0.1164.91e-071.78e-06
speciesCollinsella_intestinalis0.1148.54e-073.08e-06
speciesFusobacterium_varium0.1138.97e-073.21e-06
speciesVeillonella_atypica0.1139.33e-073.31e-06
genusPeptostreptococcus0.1139.66e-073.4e-06
genusCollinsella-0.1131.05e-063.67e-06
genusButyricimonas-0.1111.52e-065.24e-06
speciesButyricimonas_synergistica-0.1111.52e-065.24e-06
genusCatenibacterium-0.1082.87e-069.75e-06
speciesCatenibacterium_mitsuokai-0.1082.87e-069.75e-06
speciesGemella_morbillorum0.1083.08e-061.04e-05
speciesStreptococcus_anginosus0.1073.32e-061.11e-05
familyPrevotellaceae-0.1073.34e-061.11e-05
speciesErysipelotrichaceae_bacterium_3_1_530.1073.74e-061.23e-05
genusClostridiales_noname0.1073.88e-061.27e-05
genusMethanosphaera-0.1064.41e-061.43e-05
speciesMethanosphaera_stadtmanae-0.1064.41e-061.43e-05
speciesLactobacillus_ruminis-0.1055.16e-061.66e-05
genusEnterococcus0.1045.98e-061.91e-05
speciesLachnospiraceae_bacterium_2_1_46FAA0.1047.27e-062.3e-05
speciesEubacterium_rectale-0.1037.61e-062.39e-05
speciesParaprevotella_unclassified-0.1029.37e-062.93e-05
genusVeillonella0.1021.01e-053.14e-05
speciesStreptococcus_gordonii0.1021.03e-053.18e-05
speciesParaprevotella_xylaniphila-0.1021.09e-053.34e-05
familyEnterococcaceae0.1011.11e-053.38e-05
genusParaprevotella-0.11.35e-054.08e-05
speciesStreptococcus_australis0.0972.43e-057.31e-05
speciesCampylobacter_concisus0.0972.48e-057.41e-05
speciesParaprevotella_clara-0.0972.88e-058.55e-05
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0963.02e-058.91e-05
speciesParabacteroides_merdae-0.0963.5e-050.000103
speciesVeillonella_parvula0.0953.63e-050.000106
speciesStreptococcus_lutetiensis0.0953.66e-050.000106
genusPantoea0.0944.48e-050.000128
speciesPantoea_unclassified0.0944.48e-050.000128
speciesMitsuokella_multacida-0.0935.47e-050.000156
speciesClostridium_asparagiforme0.0927.29e-050.000205
speciesRuminococcus_obeum-0.0927.3e-050.000205
speciesDesulfovibrio_desulfuricans-0.0918.16e-050.000228
speciesClostridium_sp_ATCC_BAA_4420.099.42e-050.000262
genusButyricicoccus0.090.0001020.000279
speciesButyricicoccus_pullicaecorum0.090.0001020.000279
genusActinobacillus0.090.0001030.000279
speciesActinobacillus_unclassified0.090.0001030.000279
genusLachnospiraceae_noname0.0890.0001070.000289
phylumFirmicutes-0.0890.000110.000295
speciesMegamonas_unclassified0.0890.0001110.000296
genusMegamonas0.0890.0001120.000297
speciesAnaerotruncus_colihominis0.0890.0001130.000298
phylumProteobacteria0.0870.0001560.000407
genusCampylobacter0.0870.0001560.000407
speciesAggregatibacter_segnis0.0860.0001940.000503
orderActinomycetales0.0860.0002120.000547
genusMegasphaera0.0850.0002230.000572
familyClostridiales_Family_XI_Incertae_Sedis0.0850.0002430.00062
familyCampylobacteraceae0.0840.0002610.000662
familyStreptococcaceae0.0840.0002640.000666
speciesRuminococcus_bromii-0.0840.0002890.000726
speciesVeillonella_unclassified0.0830.0003460.000864
genusStreptococcus0.0820.0003850.000956
speciesAlistipes_onderdonkii-0.0820.0004090.00101
speciesBacteroides_cellulosilyticus-0.0810.0004350.00107
speciesEscherichia_coli0.0810.0004360.00107
speciesStreptococcus_vestibularis0.0810.000450.00109
speciesErysipelotrichaceae_bacterium_6_1_450.0810.0004570.00111
speciesPeptostreptococcus_stomatis0.0810.0004740.00114
speciesBifidobacterium_pseudocatenulatum0.0810.0004840.00116
genusEscherichia0.080.0005270.00126
speciesRuminococcus_torques0.0790.000660.00157
genusAggregatibacter0.0790.0006740.00159
speciesClostridium_leptum-0.0780.0006910.00162
genusParvimonas0.0780.0007670.00179
speciesParvimonas_unclassified0.0780.0007770.00181
speciesEubacterium_hallii-0.0760.0009460.00219
speciesBacteroides_vulgatus0.0760.001030.00237
speciesMegamonas_rupellensis0.0750.001150.00263
speciesEggerthella_sp_1_3_56FAA0.0740.001310.00297
speciesEnterococcus_faecium0.0740.001310.00297
speciesStreptococcus_infantarius0.0740.001360.00307
orderEnterobacteriales0.0730.001490.00333
familyEnterobacteriaceae0.0730.001490.00333
classEpsilonproteobacteria0.0730.001520.00337
orderCampylobacterales0.0730.001520.00337
classGammaproteobacteria0.0730.001550.00342
speciesKlebsiella_pneumoniae0.0720.001820.004
speciesCitrobacter_unclassified0.0720.001870.00409
genusCitrobacter0.070.002630.00572
speciesKlebsiella_oxytoca0.0690.002670.00578
speciesClostridium_perfringens0.0690.002680.00578
classBacilli0.0690.00280.00601
genusKlebsiella0.0680.00320.00683
speciesCitrobacter_freundii0.0680.00330.00702
speciesLachnospiraceae_bacterium_5_1_63FAA0.0670.003580.00758
speciesDialister_succinatiphilus-0.0660.004450.00938
genusPhascolarctobacterium-0.0660.00460.00961
speciesPhascolarctobacterium_succinatutens-0.0660.00460.00961
classDeltaproteobacteria-0.0650.005120.0106
orderDesulfovibrionales-0.0650.005120.0106
familyDesulfovibrionaceae-0.0650.005120.0106
speciesLactobacillus_gasseri0.0640.005870.012
orderLactobacillales0.0640.005980.0122
speciesRuminococcus_sp_5_1_39BFAA0.0630.006330.0129
genusRothia0.0630.006780.0137
familyMicrococcaceae0.0620.007040.0142
speciesPrevotella_copri-0.0620.00720.0145
phylumBacteroidetes0.0620.00730.0145
classBacteroidia0.0620.00730.0145
orderBacteroidales0.0620.00730.0145
speciesEubacterium_cylindroides-0.0610.0080.0158
speciesRothia_mucilaginosa0.0610.008030.0158
speciesButyrivibrio_unclassified-0.0610.008390.0164
speciesStreptococcus_pasteurianus0.0610.008620.0168
speciesEnterococcus_faecalis0.060.009380.0182
speciesBacteroides_intestinalis-0.060.00970.0188
speciesLactobacillus_salivarius0.0590.01070.0206
speciesParabacteroides_goldsteinii-0.0590.01110.0213
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0590.01140.0218
speciesHaemophilus_sputorum0.0580.01170.0223
speciesStreptococcus_parasanguinis0.0570.01320.025
familyPropionibacteriaceae0.0570.01350.0255
speciesClostridium_sp_KLE_17550.0570.01380.026
speciesSubdoligranulum_sp_4_3_54A2FAA0.0570.0140.0262
speciesParabacteroides_unclassified0.0560.01510.0282
speciesOscillibacter_sp_KLE_17450.0560.01560.029
familyLeuconostocaceae0.0560.01610.0297
genusDorea-0.0560.01610.0297
speciesAcidaminococcus_fermentans-0.0560.01620.0298
speciesAcidaminococcus_intestini0.0560.01630.0298
speciesStreptococcus_mutans0.0550.0170.031
genusPrevotella-0.0550.01740.0316
speciesCollinsella_unclassified0.0540.01870.0338
familyPorphyromonadaceae-0.0540.01960.0353
speciesBacteroides_coprophilus-0.0540.01980.0355
speciesBacteroides_nordii-0.0540.02020.0361
speciesLactococcus_lactis0.0540.02060.0367
familyVeillonellaceae0.0530.02090.0369
speciesOscillibacter_sp_KLE_17280.0530.02090.0369
speciesEnterobacter_aerogenes0.0530.02190.0386
speciesBifidobacterium_dentium0.0530.02270.0398
speciesBifidobacterium_angulatum-0.0520.02430.0425
speciesClostridium_spiroforme0.0520.02440.0425
genusAnaerostipes0.0520.02560.0444
familyStaphylococcaceae0.0510.02620.0453
speciesLactococcus_phage_P680-0.0510.02740.0472
speciesLactobacillus_fermentum0.0510.02790.0479
speciesOdoribacter_laneus-0.050.02930.0501
genusPropionibacterium0.050.03130.0533
familyAcidaminococcaceae-0.0490.03340.0567
speciesBacteroides_xylanisolvens0.0490.03350.0567
speciesKlebsiella_sp_MS_92_30.0490.03450.0582
speciesLactobacillus_rhamnosus0.0490.03530.0593
genusParasutterella-0.0480.03690.0615
speciesParasutterella_excrementihominis-0.0480.03690.0615
familySuccinivibrionaceae-0.0480.03770.0627
speciesBacteroides_sp_2_1_220.0480.03850.0638
genusPeptoniphilus0.0480.03870.0639
speciesMegamonas_hypermegale0.0480.03980.0655
speciesHaemophilus_paraphrohaemolyticus0.0470.04030.066
speciesBacteroides_thetaiotaomicron0.0470.04150.0678
genusAdlercreutzia-0.0470.04240.0688
speciesAdlercreutzia_equolifaciens-0.0470.04240.0688
genusWeissella0.0470.04260.0689
speciesLactococcus_phage_936_sensu_lato-0.0470.04280.0689
speciesProteus_mirabilis0.0470.04390.0705
speciesBacteroides_salanitronis-0.0460.04570.0731
genusSuccinatimonas-0.0460.04640.0737
speciesSuccinatimonas_hippei-0.0460.04640.0737
genusHoldemania0.0460.04680.0741
speciesBifidobacterium_breve0.0460.04740.0748
speciesBacteroides_stercoris0.0460.04820.0758
orderPseudomonadales0.0450.04950.0776
genusProteus0.0450.04970.0777
speciesLactobacillus_reuteri0.0450.05070.079
genusLeuconostoc0.0450.0520.0807
genusCoriobacteriaceae_noname0.0450.05350.0828
speciesCoriobacteriaceae_bacterium_phI0.0450.05430.0836
genusLactococcus0.0440.05440.0836
speciesBacteroides_eggerthii-0.0430.06180.0947
speciesWeissella_cibaria0.0420.07220.11
speciesLachnospiraceae_bacterium_1_1_57FAA0.0410.07620.116
speciesSutterella_wadsworthensis-0.0410.07720.117
speciesPeptostreptococcus_anaerobius0.0410.07790.118
speciesLactobacillus_vaginalis0.0410.07830.118
speciesBifidobacterium_animalis0.040.08110.122
speciesBacteroides_barnesiae-0.040.0820.123
speciesParabacteroides_sp_D13-0.0390.08970.134
speciesBifidobacterium_bifidum0.0380.09660.144
speciesLactobacillus_delbrueckii0.0380.0980.145
genusHaemophilus0.0380.1030.152
speciesBacteroides_finegoldii-0.0370.1070.158
speciesParabacteroides_sp_20_3-0.0370.1090.16
speciesRoseburia_unclassified-0.0370.1090.16
speciesHaemophilus_parainfluenzae0.0360.1150.168
orderPasteurellales0.0360.1170.169
familyPasteurellaceae0.0360.1170.169
genusRuminococcus-0.0360.1170.169
genusStaphylococcus0.0360.1190.171
genusSutterella-0.0360.1190.171
speciesBacteroides_massiliensis0.0360.120.172
speciesLactococcus_garvieae0.0350.1270.182
orderCoriobacteriales-0.0350.130.185
familyCoriobacteriaceae-0.0350.130.185
speciesPeptostreptococcaceae_noname_unclassified-0.0340.1380.196
genusGordonibacter0.0340.1420.199
speciesGordonibacter_pamelaeae0.0340.1420.199
speciesHoldemania_filiformis0.0340.1420.199
speciesBacteroides_dorei-0.0330.1490.209
speciesMegamonas_funiformis0.0330.150.209
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0330.1520.212
speciesBifidobacterium_longum0.0320.1670.232
genusTuricibacter-0.0320.1680.233
speciesAlistipes_sp_HGB5-0.0320.1730.239
speciesLactobacillus_crispatus0.0310.1780.244
speciesDialister_invisus0.0310.1780.244
speciesLactococcus_phage_phi7-0.0310.1790.245
genusErysipelotrichaceae_noname-0.0310.1870.255
speciesLactobacillus_mucosae0.030.1950.265
speciesEubacterium_limosum0.0290.2050.278
speciesBacteroides_sp_1_1_6-0.0290.2060.279
speciesTuricibacter_unclassified-0.0290.2080.281
speciesCollinsella_tanakaei0.0290.210.282
speciesPrevotella_bivia0.0290.2150.288
genusMorganella0.0290.2160.288
speciesMorganella_morganii0.0290.2160.288
speciesStreptococcus_salivarius0.0280.2280.303
orderViruses_noname0.0270.2370.314
speciesStreptococcus_phage_Sfi210.0260.2570.34
speciesStreptococcus_thermophilus0.0260.2660.351
speciesBacteroides_salyersiae-0.0250.2710.356
speciesBilophila_unclassified-0.0250.2740.359
classNegativicutes0.0250.2770.361
orderSelenomonadales0.0250.2770.361
speciesLactococcus_phage_bIL670.0250.2790.363
genusBurkholderiales_noname-0.0250.2830.366
speciesBurkholderiales_bacterium_1_1_47-0.0250.2830.366
speciesLactobacillus_casei_paracasei0.0240.290.374
speciesBacteroides_fluxus0.0240.2920.376
genusSlackia0.0240.2930.376
speciesKlebsiella_unclassified0.0240.2970.38
speciesMegasphaera_unclassified0.0240.30.383
familyBurkholderiales_noname-0.0240.3030.385
genusBilophila-0.0230.310.393
speciesDorea_formicigenerans-0.0230.3280.415
speciesLeuconostoc_lactis0.0220.3360.423
speciesBifidobacterium_catenulatum-0.0220.3360.423
speciesWeissella_confusa0.0220.3420.429
speciesLactobacillus_amylovorus0.0220.3440.431
speciesLactobacillus_sanfranciscensis0.0210.360.45
familyPodoviridae0.0210.3660.456
speciesLactobacillus_oris0.020.3870.481
speciesCoprobacillus_sp_29_1-0.020.3890.482
speciesAcidaminococcus_unclassified0.020.390.482
speciesTuricibacter_sanguinis-0.020.3950.487
speciesPorphyromonas_asaccharolytica0.0190.4010.493
speciesEnterobacteria_phage_HK5440.0190.4080.5
speciesLactobacillus_plantarum0.0190.410.501
speciesAlistipes_sp_AP11-0.0190.4110.501
speciesEscherichia_unclassified0.0190.4130.502
phylumSynergistetes-0.0180.4280.515
classSynergistia-0.0180.4280.515
orderSynergistales-0.0180.4280.515
familySynergistaceae-0.0180.4280.515
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0180.4330.52
speciesErysipelotrichaceae_bacterium_21_30.0180.440.527
speciesCoprobacillus_sp_D60.0180.4460.533
speciesOscillibacter_unclassified-0.0170.4510.538
speciesHoldemania_sp_AP20.0170.4530.539
familyLactobacillaceae0.0170.470.557
classErysipelotrichia-0.0170.4730.557
orderErysipelotrichales-0.0170.4730.557
familyErysipelotrichaceae-0.0170.4730.557
speciesLactococcus_phage_jm2-0.0170.4760.559
speciesSutterella_parvirubra0.0160.4790.561
speciesDorea_unclassified0.0160.4840.565
speciesBacteroides_clarus-0.0160.4960.578
orderAeromonadales-0.0160.4970.578
speciesParabacteroides_distasonis-0.0150.5040.584
genusRuminococcaceae_noname-0.0150.5230.604
speciesRuminococcaceae_bacterium_D16-0.0150.5230.604
genusLambdalikevirus0.0140.5330.612
genusLactobacillus0.0140.5340.612
speciesBacteroides_sp_4_3_47FAA-0.0140.5340.612
genusAcidaminococcus0.0140.5380.615
familyOscillospiraceae-0.0140.5420.616
genusOscillibacter-0.0140.5420.616
speciesBacteroides_caccae-0.0140.5470.621
speciesAnaerostipes_hadrus-0.0140.5490.621
speciesBacteroides_uniformis-0.0140.5570.629
speciesAlistipes_unclassified0.0130.5750.648
speciesBacteroides_faecis-0.0130.5790.651
genusRoseburia-0.0130.5820.653
genusTunalikevirus0.0120.5970.666
orderBifidobacteriales0.0120.5980.666
familyBifidobacteriaceae0.0120.5980.666
genusPeptostreptococcaceae_noname-0.0110.6260.695
speciesC2likevirus_unclassified-0.0110.630.697
speciesRoseburia_inulinivorans-0.0110.6310.697
speciesRoseburia_intestinalis0.0110.6370.702
speciesHoldemania_unclassified0.0110.6410.705
genusBifidobacterium0.010.6610.726
familyViruses_noname0.0090.6810.744
genusViruses_noname0.0090.6810.744
speciesOdoribacter_unclassified0.0090.6870.749
genusMyoviridae_noname0.0090.6890.749
classBetaproteobacteria0.0090.6910.75
familyLachnospiraceae-0.0090.6990.755
genusC2likevirus-0.0090.6990.755
genusAcidaminococcaceae_unclassified-0.0090.7060.761
speciesPrevotella_stercorea0.0090.7110.764
speciesRuminococcus_sp_JC3040.0090.7120.764
speciesEnterobacter_cloacae0.0080.7280.779
familySiphoviridae0.0070.7580.809
speciesBacteroides_oleiciplenus0.0070.7680.818
speciesLactobacillus_acidophilus-0.0070.7740.823
speciesClostridium_bartlettii0.0060.7840.832
speciesPorphyromonas_uenonis0.0050.8210.869
speciesSlackia_piriformis-0.0050.8250.869
genusDialister-0.0050.8270.869
speciesBilophila_wadsworthia0.0050.8270.869
genusPyramidobacter-0.0050.8330.872
speciesPyramidobacter_piscolens-0.0050.8330.872
speciesBacteroides_plebeius-0.0040.8490.884
phylumActinobacteria0.0040.8510.884
classActinobacteria0.0040.8510.884
genusEnterobacter0.0040.8520.884
speciesBacteroides_coprocola-0.0040.8590.889
speciesBacteroides_sp_3_1_190.0040.8640.892
familyPeptostreptococcaceae-0.0040.8740.901
orderBurkholderiales0.0040.8760.901
speciesPropionibacterium_freudenreichii0.0030.8810.904
speciesMegasphaera_elsdenii-0.0030.8840.905
phylumViruses_noname-0.0030.890.907
classViruses_noname-0.0030.890.907
genusPorphyromonas0.0030.8930.908
genusSutterellaceae_unclassified-0.0030.8970.909
speciesParabacteroides_johnsonii-0.0030.8970.909
genusParabacteroides-0.0010.9480.958
genusSiphoviridae_noname-0.0010.9640.972
orderCaudovirales0.0010.970.975
speciesKlebsiella_phage_KP360.0010.9710.975
familySutterellaceae-0.0010.9810.983
familyMyoviridae0.00.9920.992
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.001254960241670.0002540515765388.31801345027e-0518076.00831
Liver cirrhosisChina1201140.002251641289570.0003355293212170.000105278197358517717.3906
ObesityDenmark1691230.0001187731151230.0001001868450380.0266894515323364111.9726
Ulcerative colitisSpain78660.0004387331482180.0002540515765380.217142266871121937.0093
Rheumatoid arthritisChina127980.0007678869313890.001184122396730.2487505628171040434.695
Type II diabetesSweden53920.0002177371621670.0001099145091750.3167073936591090336.9218
Type II diabetesChina1831850.001323463242910.0008090480529520.5376038258582176571.929
Colorectal cancerAustria64350.00347513649180.001094359565050.7325496747852379380.5014
Type II diabetesDenmark752770.0001142195740490.0001115649317110.936731267712932896.1353
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382