MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-05-15 22:16:42 PST
Job id & description: 1811, arnc
Query type: protein
Count queries & homologs: 1, 1
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
arnC2063946Lack 5'-endK00754COG0463FirmicutesBlautia100.093.3100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesRuminococcus_gnavus0.5595.57e-1542.63e-151
speciesLachnospiraceae_bacterium_2_1_58FAA0.3314.02e-499.49e-47
speciesCoprobacillus_unclassified0.3161.45e-442.28e-42
genusCoprobacillus0.3074.27e-424.52e-40
speciesClostridium_ramosum0.3074.79e-424.52e-40
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2861.62e-361.27e-34
speciesLachnospiraceae_bacterium_1_4_56FAA0.2837.72e-365.21e-34
speciesSubdoligranulum_unclassified-0.2757.94e-344.68e-32
genusEggerthella0.2677.15e-323.75e-30
genusSubdoligranulum-0.2661.28e-316.04e-30
speciesClostridium_bolteae0.2652.36e-319.52e-30
speciesEggerthella_unclassified0.2652.42e-319.52e-30
phylumFusobacteria0.2611.41e-304.31e-29
classFusobacteriia0.2611.41e-304.31e-29
orderFusobacteriales0.2611.41e-304.31e-29
genusFusobacterium0.2611.46e-304.31e-29
familyFusobacteriaceae0.2612.13e-305.91e-29
speciesAlistipes_senegalensis-0.2553.23e-298.47e-28
genusBlautia0.2462.95e-277.33e-26
speciesClostridium_nexile0.2381.97e-254.65e-24
speciesLachnospiraceae_bacterium_6_1_63FAA0.2382.08e-254.68e-24
speciesBlautia_producta0.2281.48e-233.18e-22
speciesClostridium_symbiosum0.2272.45e-235.03e-22
speciesEubacterium_siraeum-0.2198.57e-221.69e-20
speciesRoseburia_hominis-0.2191.1e-212.07e-20
familyBacteroidales_noname-0.2181.23e-212.07e-20
genusBacteroidales_noname-0.2181.23e-212.07e-20
speciesBacteroidales_bacterium_ph8-0.2181.23e-212.07e-20
genusCoprococcus-0.2181.35e-212.2e-20
classMethanobacteria-0.2131.51e-202.23e-19
orderMethanobacteriales-0.2131.51e-202.23e-19
familyMethanobacteriaceae-0.2131.51e-202.23e-19
genusOxalobacter-0.2121.71e-202.37e-19
speciesOxalobacter_formigenes-0.2121.71e-202.37e-19
genusMethanobrevibacter-0.2113.05e-204.11e-19
speciesCoprococcus_catus-0.2097.18e-209.41e-19
speciesMethanobrevibacter_smithii-0.2081.03e-191.31e-18
speciesEubacterium_eligens-0.2062.1e-192.61e-18
speciesClostridium_clostridioforme0.2062.69e-193.26e-18
familyOxalobacteraceae-0.2053.09e-193.65e-18
phylumEuryarchaeota-0.2045.42e-196.24e-18
speciesStreptococcus_mitis_oralis_pneumoniae0.2021.02e-181.15e-17
speciesErysipelotrichaceae_bacterium_2_2_44A0.1961.12e-171.23e-16
speciesEubacterium_dolichum0.1961.31e-171.41e-16
speciesLachnospiraceae_bacterium_5_1_57FAA0.1942.58e-172.71e-16
speciesEggerthella_lenta0.1933.14e-173.22e-16
speciesCoprococcus_sp_ART55_1-0.1925.13e-175.15e-16
speciesAnaerotruncus_unclassified-0.191.32e-161.3e-15
speciesAlistipes_shahii-0.1882.2e-162.12e-15
speciesClostridiales_bacterium_1_7_47FAA0.1864.93e-164.65e-15
genusFlavonifractor0.1856.31e-165.73e-15
speciesFlavonifractor_plautii0.1856.31e-165.73e-15
familyClostridiaceae0.1761.55e-141.38e-13
speciesAnaerostipes_unclassified0.1762.09e-141.83e-13
speciesAlistipes_indistinctus-0.1743.9e-143.35e-13
speciesOdoribacter_splanchnicus-0.1725.95e-145.02e-13
genusOdoribacter-0.1718.89e-147.36e-13
genusClostridium0.1719.47e-147.71e-13
familyBacillales_noname0.171.46e-131.15e-12
genusGemella0.171.46e-131.15e-12
familyRuminococcaceae-0.1656.65e-135.15e-12
speciesFusobacterium_mortiferum0.1641.08e-128.22e-12
genusDesulfovibrio-0.1594.44e-123.33e-11
familyRikenellaceae-0.1585.82e-124.23e-11
genusAlistipes-0.1585.82e-124.23e-11
speciesClostridium_hathewayi0.1577.96e-125.69e-11
speciesEubacterium_biforme-0.1561.06e-117.47e-11
speciesOlsenella_unclassified-0.1541.99e-111.38e-10
genusButyrivibrio-0.156.4e-114.38e-10
orderBacillales0.157.03e-114.74e-10
speciesCoprococcus_eutactus-0.1499.93e-116.6e-10
genusActinomyces0.1481.19e-107.8e-10
speciesRuminococcus_callidus-0.1481.21e-107.82e-10
speciesMegasphaera_micronuciformis0.1471.67e-101.07e-09
genusMitsuokella-0.1462.36e-101.49e-09
speciesFusobacterium_ulcerans0.1452.76e-101.71e-09
genusAnaerotruncus-0.1443.49e-102.14e-09
familyActinomycetaceae0.1435.1e-103.09e-09
speciesMethanobrevibacter_unclassified-0.1435.21e-103.11e-09
speciesMitsuokella_unclassified-0.1427.15e-104.22e-09
speciesClostridium_citroniae0.1411.02e-095.86e-09
genusBarnesiella-0.1411.03e-095.86e-09
speciesBarnesiella_intestinihominis-0.1411.03e-095.86e-09
speciesStreptococcus_sanguinis0.141.26e-097.08e-09
speciesFusobacterium_nucleatum0.141.32e-097.33e-09
speciesCoprococcus_comes-0.1391.47e-098.07e-09
speciesAlistipes_putredinis-0.1381.9e-091.02e-08
speciesButyrivibrio_crossotus-0.1381.96e-091.02e-08
phylumVerrucomicrobia-0.1382.03e-091.02e-08
classVerrucomicrobiae-0.1382.03e-091.02e-08
orderVerrucomicrobiales-0.1382.03e-091.02e-08
familyVerrucomicrobiaceae-0.1382.03e-091.02e-08
genusAkkermansia-0.1382.03e-091.02e-08
speciesAkkermansia_muciniphila-0.1382.03e-091.02e-08
speciesAlistipes_finegoldii-0.1382.31e-091.15e-08
genusPeptostreptococcus0.1382.33e-091.15e-08
speciesEubacterium_sp_3_1_310.1363.67e-091.78e-08
speciesBifidobacterium_adolescentis-0.1363.69e-091.78e-08
speciesRuminococcus_lactaris-0.1355.16e-092.46e-08
familyBacteroidaceae0.1345.36e-092.5e-08
genusBacteroides0.1345.36e-092.5e-08
speciesBlautia_hydrogenotrophica0.1338.34e-093.86e-08
genusSolobacterium0.1321.01e-084.58e-08
speciesSolobacterium_moorei0.1321.01e-084.58e-08
genusCoprobacter-0.1321.05e-084.68e-08
speciesCoprobacter_fastidiosus-0.1321.05e-084.68e-08
genusClostridiaceae_noname0.1321.08e-084.72e-08
speciesClostridiaceae_bacterium_JC1180.1321.08e-084.72e-08
speciesClostridium_sp_L2_50-0.1311.16e-085.02e-08
speciesBacteroides_pectinophilus-0.1311.17e-085.02e-08
familyEubacteriaceae-0.1291.93e-088.06e-08
genusEubacterium-0.1291.93e-088.06e-08
speciesCollinsella_aerofaciens-0.1291.93e-088.06e-08
genusButyricimonas-0.1292.38e-089.77e-08
speciesButyricimonas_synergistica-0.1292.38e-089.77e-08
speciesPrevotella_buccae0.1282.6e-081.06e-07
speciesStreptococcus_lutetiensis0.1273.98e-081.61e-07
speciesEubacterium_ventriosum-0.1264.58e-081.83e-07
genusOlsenella-0.1255.4e-082.14e-07
genusFaecalibacterium-0.1255.63e-082.2e-07
speciesFaecalibacterium_prausnitzii-0.1255.63e-082.2e-07
speciesDesulfovibrio_piger-0.1231.02e-073.95e-07
speciesRuminococcus_champanellensis-0.121.86e-077.14e-07
speciesParaprevotella_xylaniphila-0.1192.71e-071.03e-06
genusButyricicoccus0.1182.86e-071.07e-06
speciesButyricicoccus_pullicaecorum0.1182.86e-071.07e-06
genusEnterococcus0.1182.9e-071.08e-06
speciesFusobacterium_varium0.1183.31e-071.22e-06
familyStreptococcaceae0.1174.12e-071.51e-06
speciesParaprevotella_unclassified-0.1165.13e-071.86e-06
familyEnterococcaceae0.1165.48e-071.97e-06
familyClostridiales_noname0.1156.69e-072.39e-06
speciesEubacterium_ramulus-0.1147.18e-072.54e-06
genusParaprevotella-0.1147.2e-072.54e-06
familyPrevotellaceae-0.1148.01e-072.8e-06
speciesParaprevotella_clara-0.1148.2e-072.85e-06
speciesErysipelotrichaceae_bacterium_3_1_530.1139.53e-073.28e-06
genusStreptococcus0.1131.03e-063.52e-06
genusLachnospiraceae_noname0.1121.22e-064.14e-06
speciesGemella_morbillorum0.1121.3e-064.38e-06
speciesLachnospiraceae_bacterium_2_1_46FAA0.1111.4e-064.69e-06
speciesBacteroides_fragilis0.1111.48e-064.92e-06
speciesStreptococcus_gordonii0.1092.35e-067.76e-06
speciesPeptostreptococcus_stomatis0.1092.46e-068.06e-06
genusClostridiales_noname0.1082.61e-068.5e-06
speciesMitsuokella_multacida-0.1082.8e-069.05e-06
speciesEubacterium_rectale-0.1082.99e-069.6e-06
speciesStreptococcus_anginosus0.1073.62e-061.15e-05
speciesCampylobacter_concisus0.1064.27e-061.35e-05
speciesBacteroides_cellulosilyticus-0.1064.67e-061.47e-05
genusCollinsella-0.1055.13e-061.6e-05
speciesVeillonella_atypica0.1055.31e-061.65e-05
speciesErysipelotrichaceae_bacterium_6_1_450.1055.82e-061.8e-05
genusPantoea0.1046.18e-061.88e-05
speciesPantoea_unclassified0.1046.18e-061.88e-05
speciesRuminococcus_torques0.1046.22e-061.88e-05
speciesVeillonella_dispar0.1037.37e-062.22e-05
speciesDesulfovibrio_desulfuricans-0.1037.82e-062.34e-05
genusPseudoflavonifractor-0.1037.99e-062.36e-05
speciesPseudoflavonifractor_capillosus-0.1037.99e-062.36e-05
orderActinomycetales0.1038.12e-062.38e-05
classBacilli0.1029.96e-062.9e-05
speciesBacteroides_ovatus0.1021.02e-052.95e-05
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1011.13e-053.25e-05
orderLactobacillales0.1011.27e-053.63e-05
classClostridia-0.11.46e-054.13e-05
orderClostridiales-0.11.46e-054.13e-05
genusCatenibacterium-0.11.54e-054.3e-05
speciesCatenibacterium_mitsuokai-0.11.54e-054.3e-05
speciesLactobacillus_rhamnosus0.0982.31e-056.41e-05
speciesEnterococcus_faecium0.0972.66e-057.34e-05
speciesCollinsella_intestinalis0.0963.33e-059.14e-05
speciesStreptococcus_australis0.0944.9e-050.000134
speciesStreptococcus_vestibularis0.0935.65e-050.000153
speciesLactobacillus_ruminis-0.0935.74e-050.000155
genusMethanosphaera-0.0936.16e-050.000164
speciesMethanosphaera_stadtmanae-0.0936.16e-050.000164
speciesStreptococcus_parasanguinis0.0927.01e-050.000186
speciesParabacteroides_merdae-0.0918.09e-050.000213
speciesDorea_longicatena-0.0918.42e-050.000221
classDeltaproteobacteria-0.0918.82e-050.000227
orderDesulfovibrionales-0.0918.82e-050.000227
familyDesulfovibrionaceae-0.0918.82e-050.000227
speciesParabacteroides_goldsteinii-0.099.48e-050.000243
orderEnterobacteriales0.0880.0001310.000332
familyEnterobacteriaceae0.0880.0001310.000332
classGammaproteobacteria0.0870.0001580.000397
genusEscherichia0.0870.0001580.000397
speciesClostridium_asparagiforme0.0870.0001590.000397
speciesEscherichia_coli0.0870.0001640.000407
genusMegasphaera0.0860.0001880.000465
speciesSubdoligranulum_sp_4_3_54A2FAA0.0860.0001920.000472
speciesLactobacillus_fermentum0.0850.0002260.000553
speciesLactobacillus_gasseri0.0850.0002490.000606
speciesClostridium_sp_ATCC_BAA_4420.0850.0002520.00061
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0840.000260.000626
speciesEggerthella_sp_1_3_56FAA0.0830.0003090.00074
speciesEnterococcus_faecalis0.0830.000330.000787
speciesVeillonella_parvula0.0830.0003450.000818
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0830.000350.000826
genusVeillonella0.0820.0003850.000904
speciesRothia_mucilaginosa0.0820.0003970.000928
speciesStreptococcus_infantarius0.0810.0004250.000988
genusKlebsiella0.0810.0004480.00104
genusParvimonas0.080.0005520.00127
speciesParvimonas_unclassified0.080.0005620.00129
speciesStreptococcus_mutans0.0790.0005840.00133
genusRothia0.0790.0005970.00135
familyMicrococcaceae0.0790.0006210.0014
speciesAnaerotruncus_colihominis0.0780.0007640.00172
familyClostridiales_Family_XI_Incertae_Sedis0.0780.000790.00177
speciesRuminococcus_bromii-0.0770.0007970.00177
speciesStreptococcus_pasteurianus0.0770.0008720.00193
speciesLactobacillus_salivarius0.0760.0010.00221
speciesKlebsiella_pneumoniae0.0760.001030.00226
speciesBacteroides_intestinalis-0.0750.001120.00245
phylumProteobacteria0.0750.001150.0025
familyLeuconostocaceae0.0750.001190.00258
genusCampylobacter0.0740.001460.00313
speciesAlistipes_onderdonkii-0.0740.001460.00313
speciesBifidobacterium_dentium0.0720.001820.00389
speciesRuminococcus_obeum-0.0720.001830.00389
speciesKlebsiella_oxytoca0.0710.002150.00455
familyCampylobacteraceae0.0710.002170.00457
genusLactococcus0.0710.002240.0047
genusAggregatibacter0.070.002470.00516
speciesLactococcus_lactis0.070.002480.00516
genusCitrobacter0.070.002580.00534
speciesCitrobacter_freundii0.070.002620.0054
speciesBifidobacterium_pseudocatenulatum0.0690.002650.00544
speciesClostridium_leptum-0.0690.002690.0055
speciesDialister_succinatiphilus-0.0690.002780.00565
speciesRuminococcus_sp_5_1_39BFAA0.0690.002790.00565
speciesCitrobacter_unclassified0.0690.002820.00569
genusAnaerostipes0.0680.003160.00635
speciesEubacterium_cylindroides-0.0680.003180.00636
speciesLachnospiraceae_bacterium_5_1_63FAA0.0670.003560.00709
orderPseudomonadales0.0670.003950.00783
speciesLactobacillus_mucosae0.0660.004070.00804
familyPorphyromonadaceae-0.0660.004530.00891
speciesClostridium_perfringens0.0650.005120.01
speciesLactobacillus_delbrueckii0.0650.00520.0101
genusAdlercreutzia-0.0640.00540.0104
speciesLactobacillus_crispatus0.0640.00540.0104
speciesAdlercreutzia_equolifaciens-0.0640.00540.0104
speciesLactobacillus_casei_paracasei0.0640.005580.0107
genusActinobacillus0.0640.005960.0113
speciesActinobacillus_unclassified0.0640.005960.0113
speciesPrevotella_copri-0.0630.006240.0118
speciesAggregatibacter_segnis0.0620.006960.0131
phylumFirmicutes-0.0620.007080.0133
familyLactobacillaceae0.0620.007210.0135
speciesClostridium_sp_KLE_17550.0620.007630.0142
speciesWeissella_cibaria0.0620.007650.0142
classEpsilonproteobacteria0.0610.007980.0147
orderCampylobacterales0.0610.007980.0147
genusWeissella0.060.008920.0164
speciesDialister_invisus0.060.0090.0165
speciesAcidaminococcus_intestini0.060.009430.0172
genusLactobacillus0.0590.01030.0187
speciesLactobacillus_reuteri0.0590.01120.0203
genusLeuconostoc0.0580.0120.0216
speciesStreptococcus_salivarius0.0580.01230.0221
speciesKlebsiella_unclassified0.0570.01360.0243
speciesBacteroides_nordii-0.0570.01450.0258
speciesLactococcus_garvieae0.0560.0150.0266
speciesProteus_mirabilis0.0560.01510.0267
familyPropionibacteriaceae0.0560.01560.0275
genusPrevotella-0.0550.01740.0304
speciesBifidobacterium_angulatum-0.0550.01740.0304
genusPhascolarctobacterium-0.0550.01750.0304
speciesPhascolarctobacterium_succinatutens-0.0550.01750.0304
speciesVeillonella_unclassified0.0550.01760.0304
speciesCoriobacteriaceae_bacterium_phI0.0530.02090.036
speciesCoprobacillus_sp_D60.0520.02330.04
genusSutterella-0.0520.0240.041
genusBilophila-0.0520.02510.0428
speciesLactobacillus_vaginalis0.0520.02590.044
speciesBilophila_unclassified-0.0510.02610.0442
speciesHaemophilus_paraphrohaemolyticus0.0510.02630.0443
speciesSutterella_wadsworthensis-0.0510.02710.0455
speciesEubacterium_hallii-0.0510.02740.0459
genusCoriobacteriaceae_noname0.0510.02830.0472
genusProteus0.0510.02840.0472
speciesBifidobacterium_breve0.050.03170.0525
speciesStreptococcus_thermophilus0.0490.03350.0553
genusHoldemania0.0490.03410.0561
speciesOdoribacter_laneus-0.0490.03550.0582
familyOscillospiraceae-0.0490.03580.0583
genusOscillibacter-0.0490.03580.0583
speciesBifidobacterium_animalis0.0480.03790.0613
speciesBacteroides_sp_2_1_220.0480.03790.0613
speciesLactococcus_phage_936_sensu_lato-0.0470.0420.0674
speciesEscherichia_unclassified0.0470.0420.0674
speciesMegamonas_unclassified0.0470.04290.0685
speciesCollinsella_unclassified0.0470.04310.0685
speciesHoldemania_sp_AP20.0470.04310.0685
genusMegamonas0.0470.04420.07
speciesAcidaminococcus_fermentans-0.0460.04770.0753
speciesRuminococcus_sp_JC3040.0450.05130.0806
speciesBacteroides_finegoldii-0.0450.05140.0806
genusPeptoniphilus0.0450.05170.0808
speciesButyrivibrio_unclassified-0.0450.05240.0816
speciesOscillibacter_unclassified-0.0450.05430.0842
familySuccinivibrionaceae-0.0440.05440.0842
speciesStreptococcus_phage_Sfi210.0440.05530.0853
speciesBacteroides_eggerthii-0.0440.05610.0863
genusSuccinatimonas-0.0430.06490.0991
speciesSuccinatimonas_hippei-0.0430.06490.0991
familyVeillonellaceae0.0420.06720.102
speciesBifidobacterium_longum0.0420.07150.109
speciesHaemophilus_sputorum0.0410.07430.112
speciesPeptostreptococcus_anaerobius0.0410.07480.113
speciesOdoribacter_unclassified0.0410.07750.116
familyAcidaminococcaceae-0.040.08090.121
speciesLactococcus_phage_P680-0.0390.0890.133
speciesEnterobacter_aerogenes0.0390.08930.133
speciesBacteroides_salanitronis-0.0390.08940.133
genusPropionibacterium0.0390.09360.138
speciesWeissella_confusa0.0380.09620.142
speciesMegamonas_rupellensis0.0380.09750.143
genusRuminococcaceae_noname-0.0380.10.146
speciesRuminococcaceae_bacterium_D16-0.0380.10.146
genusGordonibacter0.0380.1010.147
speciesGordonibacter_pamelaeae0.0380.1010.147
speciesBacteroides_thetaiotaomicron0.0370.1050.152
speciesParabacteroides_sp_D13-0.0370.1070.154
speciesOscillibacter_sp_KLE_17280.0370.1090.157
familyStaphylococcaceae0.0370.1140.164
speciesBacteroides_coprophilus-0.0360.1160.166
speciesKlebsiella_sp_MS_92_30.0360.1170.167
speciesHoldemania_filiformis0.0360.1210.172
speciesBacteroides_stercoris0.0360.1230.174
genusMorganella0.0350.1250.176
speciesMorganella_morganii0.0350.1250.176
speciesErysipelotrichaceae_bacterium_21_30.0350.130.183
speciesBacteroides_clarus-0.0350.1340.188
speciesClostridium_spiroforme0.0340.1370.191
speciesBacteroides_caccae-0.0340.1370.191
speciesLactobacillus_oris0.0340.1420.197
speciesEubacterium_limosum0.0340.1450.2
speciesBacteroides_barnesiae-0.0340.1450.2
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0330.1480.204
speciesTuricibacter_unclassified-0.0330.150.206
genusParasutterella-0.0330.1520.207
speciesParasutterella_excrementihominis-0.0330.1520.207
speciesBacteroides_dorei-0.0330.1530.208
genusTuricibacter-0.0330.1540.209
speciesParabacteroides_unclassified0.0330.1590.215
speciesAlistipes_sp_HGB5-0.0320.1630.219
speciesBacteroides_faecis-0.0320.1630.219
speciesOscillibacter_sp_KLE_17450.0310.180.241
genusRoseburia-0.0290.2040.273
speciesLactobacillus_sanfranciscensis0.0290.2050.273
speciesParabacteroides_sp_20_3-0.0290.2130.283
speciesRoseburia_inulinivorans-0.0280.2230.296
phylumBacteroidetes0.0280.2240.296
classBacteroidia0.0280.2250.296
orderBacteroidales0.0280.2250.296
speciesPrevotella_bivia0.0280.2310.302
speciesBilophila_wadsworthia-0.0280.2310.302
speciesBacteroides_salyersiae-0.0270.2410.314
speciesMegasphaera_unclassified0.0270.2460.32
speciesBacteroides_xylanisolvens0.0260.2530.328
genusDorea-0.0260.2650.343
genusRuminococcus-0.0250.2740.353
speciesBifidobacterium_bifidum0.0250.2850.367
speciesLachnospiraceae_bacterium_1_1_57FAA0.0250.2860.367
speciesBifidobacterium_catenulatum-0.0240.2930.375
speciesTuricibacter_sanguinis-0.0240.2940.375
speciesBacteroides_massiliensis0.0240.2980.379
speciesBacteroides_uniformis-0.0240.3020.383
genusSlackia0.0230.3150.399
genusSutterellaceae_unclassified-0.0230.3240.409
speciesRoseburia_unclassified-0.0230.3260.41
genusDialister0.0220.340.427
genusAcidaminococcus0.0220.3470.433
speciesAlistipes_sp_AP11-0.0220.3470.433
familySutterellaceae-0.0220.3490.435
phylumActinobacteria0.0220.3510.435
classActinobacteria0.0220.3510.435
speciesBacteroides_fluxus0.0210.3590.444
speciesBacteroides_vulgatus0.0210.360.444
genusStaphylococcus0.020.3780.463
speciesBacteroides_sp_1_1_60.020.3780.463
speciesLeuconostoc_lactis0.020.3850.47
speciesLactobacillus_amylovorus0.020.3850.47
speciesParabacteroides_johnsonii-0.020.3870.471
orderBifidobacteriales0.020.3920.474
familyBifidobacteriaceae0.020.3920.474
familyLachnospiraceae0.020.3970.479
speciesParabacteroides_distasonis-0.0190.4030.485
phylumSynergistetes-0.0190.4080.486
classSynergistia-0.0190.4080.486
orderSynergistales-0.0190.4080.486
familySynergistaceae-0.0190.4080.486
classNegativicutes0.0180.4370.518
orderSelenomonadales0.0180.4370.518
genusBifidobacterium0.0170.4530.536
speciesDorea_unclassified0.0170.4580.54
speciesLactobacillus_plantarum0.0170.4740.558
familySiphoviridae0.0160.4770.56
genusAcidaminococcaceae_unclassified-0.0160.4810.563
genusTunalikevirus0.0160.4860.568
orderBurkholderiales-0.0150.5040.587
speciesLactococcus_phage_jm2-0.0150.5060.588
speciesHoldemania_unclassified-0.0150.5130.595
genusMyoviridae_noname-0.0150.5250.607
speciesPeptostreptococcaceae_noname_unclassified-0.0150.5260.607
speciesMegamonas_hypermegale0.0150.5290.609
familyMyoviridae-0.0140.5440.625
speciesAcidaminococcus_unclassified0.0140.5560.637
genusSiphoviridae_noname0.0130.5620.642
genusBurkholderiales_noname-0.0130.570.648
speciesBurkholderiales_bacterium_1_1_47-0.0130.570.648
speciesSutterella_parvirubra-0.0130.5720.649
familyPodoviridae0.0130.5830.66
familyBurkholderiales_noname-0.0120.5960.673
speciesBacteroides_sp_4_3_47FAA0.0120.6020.678
speciesLactococcus_phage_bIL670.0120.6050.68
genusParabacteroides-0.0120.6070.681
genusHaemophilus0.0120.6090.681
speciesBacteroides_oleiciplenus-0.0120.6150.685
speciesLactococcus_phage_phi7-0.0120.6170.685
speciesHaemophilus_parainfluenzae0.0120.6170.685
speciesClostridium_bartlettii0.0110.620.687
orderPasteurellales0.0110.6260.69
familyPasteurellaceae0.0110.6260.69
classBetaproteobacteria-0.010.650.715
phylumViruses_noname-0.010.6640.726
classViruses_noname-0.010.6640.726
familyViruses_noname0.010.6660.726
genusViruses_noname0.010.6660.726
speciesPorphyromonas_uenonis0.010.6730.732
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.010.6760.733
speciesPropionibacterium_freudenreichii0.010.6790.735
orderCoriobacteriales-0.0090.6820.735
familyCoriobacteriaceae-0.0090.6820.735
genusErysipelotrichaceae_noname-0.0090.7010.754
speciesBacteroides_plebeius-0.0080.7270.78
speciesCollinsella_tanakaei-0.0080.7290.78
speciesBacteroides_sp_3_1_19-0.0080.7340.784
genusEnterobacter-0.0070.7560.805
genusPyramidobacter-0.0070.7650.811
speciesPyramidobacter_piscolens-0.0070.7650.811
speciesMegasphaera_elsdenii0.0070.770.815
speciesMegamonas_funiformis-0.0060.7920.836
genusLambdalikevirus0.0050.8120.856
speciesAlistipes_unclassified0.0050.8190.861
speciesSlackia_piriformis-0.0050.8270.867
speciesDorea_formicigenerans-0.0050.8440.883
speciesC2likevirus_unclassified-0.0040.850.888
speciesKlebsiella_phage_KP360.0040.8520.888
speciesCoprobacillus_sp_29_10.0040.8580.892
orderAeromonadales-0.0040.8650.897
familyPeptostreptococcaceae0.0040.8720.903
speciesRoseburia_intestinalis-0.0030.8930.921
speciesLactobacillus_acidophilus0.0030.8940.921
speciesBacteroides_coprocola0.0030.8970.922
orderCaudovirales0.0020.9290.952
speciesEnterobacter_cloacae-0.0020.930.952
genusC2likevirus-0.0020.9370.957
speciesEnterobacteria_phage_HK5440.0020.9390.957
speciesPrevotella_stercorea-0.0020.9450.961
orderViruses_noname-0.0010.9580.972
classErysipelotrichia0.0010.970.975
orderErysipelotrichales0.0010.970.975
familyErysipelotrichaceae0.0010.970.975
genusPorphyromonas-0.0010.9730.975
genusPeptostreptococcaceae_noname-0.0010.9730.975
speciesPorphyromonas_asaccharolytica0.0010.9730.975
speciesAnaerostipes_hadrus0.01.01.0
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.001943951683990.0002740559733691.06007480546e-05363012.1939
Crohns diseaseSpain17660.00105237111460.0002132582586370.000369130271145303310.0848
ObesityDenmark1691230.0001201459554768.47619689428e-050.0405873540251451814.8565
Type II diabetesSweden53920.0002036200271055.60248908285e-050.121714973805433114.6664
Rheumatoid arthritisChina127980.0006618248126670.001047040286060.3331835739541296343.2287
Type II diabetesChina1831850.001164312528880.0007557251899470.3626535504561801459.5327
Colorectal cancerAustria64350.003174940690190.0009546091296760.7524497210352417681.7973
Ulcerative colitisSpain78660.0003708943641540.0002132582586370.875948565572745890.5786
Type II diabetesDenmark752770.0001159007807080.0001060187623840.9237388058982907195.2929
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382