MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-05-15 22:37:35 PST
Job id & description: 1813, fucosebifunc
Query type: dna
Count queries & homologs: 1, 1
Min % identity & max e-value: 90%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
bifunctionalkinase123987CompleteK05305COG2605;NOG147580FirmicutesBlautia100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesRuminococcus_gnavus0.5871.16e-1735.48e-171
speciesLachnospiraceae_bacterium_2_1_58FAA0.3512.88e-556.8e-53
speciesCoprobacillus_unclassified0.3091.23e-421.94e-40
genusCoprobacillus0.3066.9e-428.14e-40
speciesLachnospiraceae_bacterium_1_4_56FAA0.2981.38e-391.3e-37
speciesClostridium_ramosum0.2925.23e-384.11e-36
speciesClostridium_bolteae0.2773.39e-342.29e-32
speciesSubdoligranulum_unclassified-0.2741.46e-338.61e-32
genusSubdoligranulum-0.2661.29e-316.77e-30
familyFusobacteriaceae0.2635.55e-312.62e-29
phylumFusobacteria0.2637.41e-312.69e-29
classFusobacteriia0.2637.41e-312.69e-29
orderFusobacteriales0.2637.41e-312.69e-29
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2629.91e-313.34e-29
genusFusobacterium0.2611.51e-304.69e-29
speciesClostridium_nexile0.2611.59e-304.69e-29
genusEggerthella0.2593.96e-301.1e-28
speciesAlistipes_senegalensis-0.2562.34e-296.14e-28
speciesEggerthella_unclassified0.2562.47e-296.14e-28
genusBlautia0.2382.15e-255.07e-24
speciesClostridium_symbiosum0.2341.06e-242.38e-23
speciesRoseburia_hominis-0.2332.02e-244.33e-23
genusOxalobacter-0.2263.79e-237.45e-22
speciesOxalobacter_formigenes-0.2263.79e-237.45e-22
familyBacteroidales_noname-0.2214.16e-227.27e-21
genusBacteroidales_noname-0.2214.16e-227.27e-21
speciesBacteroidales_bacterium_ph8-0.2214.16e-227.27e-21
genusCoprococcus-0.225.47e-228.72e-21
genusFlavonifractor0.225.54e-228.72e-21
speciesFlavonifractor_plautii0.225.54e-228.72e-21
familyOxalobacteraceae-0.226.33e-229.64e-21
speciesLachnospiraceae_bacterium_6_1_63FAA0.2163.35e-214.94e-20
speciesEubacterium_eligens-0.2163.75e-215.36e-20
speciesCoprococcus_sp_ART55_1-0.2147.28e-211.01e-19
speciesEubacterium_dolichum0.2112.9e-203.91e-19
speciesCoprococcus_catus-0.2113.05e-204e-19
classMethanobacteria-0.213.92e-204.74e-19
orderMethanobacteriales-0.213.92e-204.74e-19
familyMethanobacteriaceae-0.213.92e-204.74e-19
speciesMethanobrevibacter_smithii-0.2071.34e-191.58e-18
genusMethanobrevibacter-0.2071.42e-191.63e-18
speciesEubacterium_siraeum-0.2044.29e-194.82e-18
phylumEuryarchaeota-0.2046.21e-196.82e-18
speciesBlautia_producta0.2029.72e-191.04e-17
speciesClostridium_clostridioforme0.1994.48e-184.7e-17
speciesAlistipes_shahii-0.1942.39e-172.45e-16
speciesAnaerotruncus_unclassified-0.1942.67e-172.68e-16
genusButyrivibrio-0.1891.87e-161.84e-15
speciesClostridiales_bacterium_1_7_47FAA0.1882.87e-162.76e-15
speciesStreptococcus_mitis_oralis_pneumoniae0.1865.74e-165.42e-15
speciesEggerthella_lenta0.1857.06e-166.53e-15
genusOdoribacter-0.1857.92e-167.19e-15
speciesErysipelotrichaceae_bacterium_2_2_44A0.1831.47e-151.31e-14
speciesOdoribacter_splanchnicus-0.1788.83e-157.72e-14
speciesLachnospiraceae_bacterium_5_1_57FAA0.1752.93e-142.51e-13
speciesBlautia_hydrogenotrophica0.1744.1e-143.46e-13
speciesFusobacterium_ulcerans0.1726.98e-145.78e-13
genusDesulfovibrio-0.1711.07e-138.71e-13
speciesMegasphaera_micronuciformis0.1691.76e-131.41e-12
speciesAnaerostipes_unclassified0.1673.99e-133.14e-12
speciesButyrivibrio_crossotus-0.1665.37e-134.16e-12
familyClostridiaceae0.1656.04e-134.6e-12
speciesFusobacterium_nucleatum0.1656.74e-135.05e-12
speciesEubacterium_biforme-0.1631.3e-129.59e-12
familyRikenellaceae-0.1631.53e-121.09e-11
genusAlistipes-0.1631.53e-121.09e-11
speciesClostridium_hathewayi0.1622.02e-121.42e-11
familyRuminococcaceae-0.1622.12e-121.47e-11
speciesAlistipes_indistinctus-0.1612.65e-121.81e-11
genusClostridium0.163.45e-122.33e-11
speciesClostridium_sp_L2_50-0.1594.47e-122.97e-11
familyBacteroidaceae0.1579.82e-126.35e-11
genusBacteroides0.1579.82e-126.35e-11
familyBacillales_noname0.1561.08e-116.8e-11
genusGemella0.1561.08e-116.8e-11
speciesFusobacterium_mortiferum0.1551.81e-111.12e-10
speciesAlistipes_putredinis-0.1514.95e-113.03e-10
speciesBifidobacterium_adolescentis-0.1515.91e-113.58e-10
orderBacillales0.1481.17e-106.59e-10
genusMitsuokella-0.1481.17e-106.59e-10
phylumVerrucomicrobia-0.1481.2e-106.59e-10
classVerrucomicrobiae-0.1481.2e-106.59e-10
orderVerrucomicrobiales-0.1481.2e-106.59e-10
familyVerrucomicrobiaceae-0.1481.2e-106.59e-10
genusAkkermansia-0.1481.2e-106.59e-10
speciesAkkermansia_muciniphila-0.1481.2e-106.59e-10
genusActinomyces0.1481.29e-107e-10
genusBarnesiella-0.1471.71e-109.07e-10
speciesBarnesiella_intestinihominis-0.1471.71e-109.07e-10
genusPeptostreptococcus0.1471.81e-109.49e-10
speciesMitsuokella_unclassified-0.1462.16e-101.12e-09
genusAnaerotruncus-0.1462.23e-101.14e-09
speciesCoprococcus_eutactus-0.1453.1e-101.57e-09
familyActinomycetaceae0.1443.46e-101.74e-09
speciesAlistipes_finegoldii-0.1444.29e-102.13e-09
genusClostridiaceae_noname0.141.15e-095.6e-09
speciesClostridiaceae_bacterium_JC1180.141.15e-095.6e-09
familyClostridiales_noname0.1391.42e-096.84e-09
speciesOlsenella_unclassified-0.1391.53e-097.29e-09
speciesRuminococcus_callidus-0.1391.62e-097.65e-09
speciesBacteroides_pectinophilus-0.1391.76e-098.22e-09
speciesRuminococcus_lactaris-0.1381.93e-098.93e-09
speciesClostridium_citroniae0.1354.42e-092.03e-08
speciesMethanobrevibacter_unclassified-0.1354.65e-092.11e-08
speciesPrevotella_buccae0.1345.49e-092.47e-08
speciesEubacterium_sp_3_1_310.1337.71e-093.43e-08
speciesDesulfovibrio_piger-0.1329.11e-094.02e-08
speciesEubacterium_ventriosum-0.1329.5e-094.15e-08
speciesStreptococcus_sanguinis0.131.61e-086.97e-08
genusSolobacterium0.131.76e-087.48e-08
speciesSolobacterium_moorei0.131.76e-087.48e-08
speciesCoprococcus_comes-0.1282.51e-081.06e-07
speciesRuminococcus_champanellensis-0.1273.37e-081.41e-07
genusCoprobacter-0.1273.95e-081.62e-07
speciesCoprobacter_fastidiosus-0.1273.95e-081.62e-07
familyEubacteriaceae-0.1211.58e-076.43e-07
genusEubacterium-0.1211.6e-076.45e-07
speciesLactobacillus_ruminis-0.1211.63e-076.52e-07
speciesPeptostreptococcus_stomatis0.121.78e-077.06e-07
genusButyricimonas-0.1182.82e-071.1e-06
speciesButyricimonas_synergistica-0.1182.82e-071.1e-06
genusFaecalibacterium-0.1183.25e-071.25e-06
speciesFaecalibacterium_prausnitzii-0.1183.25e-071.25e-06
speciesGemella_morbillorum0.1174.28e-071.63e-06
genusOlsenella-0.1174.31e-071.63e-06
speciesBacteroides_fragilis0.1164.55e-071.7e-06
speciesVeillonella_dispar0.1165.2e-071.93e-06
familyPrevotellaceae-0.1155.59e-072.06e-06
speciesCollinsella_intestinalis0.1155.7e-072.08e-06
speciesMitsuokella_multacida-0.1155.72e-072.08e-06
genusButyricicoccus0.1156.15e-072.2e-06
speciesButyricicoccus_pullicaecorum0.1156.15e-072.2e-06
speciesCampylobacter_concisus0.1156.62e-072.35e-06
speciesParaprevotella_unclassified-0.1146.99e-072.46e-06
speciesLachnospiraceae_bacterium_2_1_46FAA0.1147.34e-072.57e-06
genusParaprevotella-0.1147.85e-072.72e-06
speciesParaprevotella_xylaniphila-0.1121.17e-064.03e-06
speciesParaprevotella_clara-0.1111.6e-065.47e-06
speciesStreptococcus_anginosus0.111.71e-065.81e-06
speciesCollinsella_aerofaciens-0.111.79e-066.03e-06
speciesVeillonella_atypica0.111.81e-066.06e-06
speciesParabacteroides_merdae-0.112.01e-066.68e-06
familyStreptococcaceae0.1092.3e-067.59e-06
genusEnterococcus0.1092.35e-067.7e-06
classClostridia-0.1082.57e-068.31e-06
orderClostridiales-0.1082.57e-068.31e-06
familyEnterococcaceae0.1073.41e-061.09e-05
genusClostridiales_noname0.1073.47e-061.11e-05
speciesStreptococcus_lutetiensis0.1073.58e-061.13e-05
familyClostridiales_Family_XI_Incertae_Sedis0.1073.66e-061.15e-05
speciesBacteroides_ovatus0.1073.73e-061.17e-05
speciesStreptococcus_gordonii0.1073.83e-061.19e-05
orderActinomycetales0.1064.28e-061.32e-05
speciesStreptococcus_vestibularis0.1064.53e-061.39e-05
genusStreptococcus0.1054.88e-061.49e-05
speciesFusobacterium_varium0.1046.33e-061.92e-05
genusPseudoflavonifractor-0.1046.42e-061.92e-05
speciesPseudoflavonifractor_capillosus-0.1046.42e-061.92e-05
speciesDesulfovibrio_desulfuricans-0.1038.32e-062.47e-05
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1028.95e-062.64e-05
speciesErysipelotrichaceae_bacterium_6_1_450.1021.01e-052.96e-05
genusCatenibacterium-0.1021.03e-052.96e-05
speciesClostridium_asparagiforme0.1021.03e-052.96e-05
speciesCatenibacterium_mitsuokai-0.1021.03e-052.96e-05
genusMethanosphaera-0.1021.09e-053.1e-05
speciesMethanosphaera_stadtmanae-0.1021.09e-053.1e-05
speciesEubacterium_ramulus-0.11.44e-054.07e-05
genusPantoea0.0991.72e-054.8e-05
speciesPantoea_unclassified0.0991.72e-054.8e-05
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0991.78e-054.94e-05
speciesBacteroides_cellulosilyticus-0.0991.96e-055.41e-05
genusParvimonas0.0982.1e-055.76e-05
speciesParvimonas_unclassified0.0982.13e-055.81e-05
speciesDorea_longicatena-0.0982.24e-056.08e-05
speciesErysipelotrichaceae_bacterium_3_1_530.0972.88e-057.77e-05
speciesLactobacillus_gasseri0.0972.91e-057.8e-05
speciesEubacterium_rectale-0.0954.03e-050.000107
speciesAnaerotruncus_colihominis0.0954.06e-050.000108
genusActinobacillus0.0944.37e-050.000115
speciesActinobacillus_unclassified0.0944.37e-050.000115
speciesRuminococcus_torques0.0926.64e-050.000173
genusCampylobacter0.0926.77e-050.000176
speciesVeillonella_parvula0.0918.36e-050.000216
speciesStreptococcus_parasanguinis0.098.9e-050.000228
genusVeillonella0.099.09e-050.000232
genusMegasphaera0.0890.0001080.000274
familyCampylobacteraceae0.0890.0001230.00031
classDeltaproteobacteria-0.0880.0001310.000325
orderDesulfovibrionales-0.0880.0001310.000325
familyDesulfovibrionaceae-0.0880.0001310.000325
genusLachnospiraceae_noname0.0880.0001430.000353
classBacilli0.0870.0001640.000403
genusCollinsella-0.0850.000230.000562
speciesAlistipes_onderdonkii-0.0840.0002570.000625
speciesClostridium_sp_ATCC_BAA_4420.0830.000320.000775
speciesStreptococcus_mutans0.0830.0003230.000778
orderLactobacillales0.0830.0003250.000779
speciesLactobacillus_fermentum0.0820.000360.000858
speciesRuminococcus_obeum-0.0820.0003660.000868
classEpsilonproteobacteria0.0810.000440.00103
orderCampylobacterales0.0810.000440.00103
speciesEscherichia_coli0.0810.000480.00112
speciesEnterococcus_faecium0.0810.0004810.00112
speciesEggerthella_sp_1_3_56FAA0.080.0005340.00124
genusRothia0.080.0005630.0013
speciesRuminococcus_bromii-0.080.0005660.0013
familyMicrococcaceae0.0790.0005940.00135
speciesBacteroides_intestinalis-0.0790.0006320.00143
speciesLactococcus_lactis0.0790.0006690.00151
speciesStreptococcus_australis0.0780.0007840.00176
speciesRothia_mucilaginosa0.0770.000810.00181
phylumFirmicutes-0.0770.0008760.00195
speciesRuminococcus_sp_5_1_39BFAA0.0770.0008830.00196
genusEscherichia0.0770.0009230.00203
genusLactococcus0.0770.0009260.00203
genusAggregatibacter0.0760.0009680.00212
speciesEnterococcus_faecalis0.0750.001160.00252
speciesKlebsiella_oxytoca0.0740.001310.00282
speciesLactobacillus_salivarius0.0740.001310.00282
genusPeptoniphilus0.0740.001370.00294
speciesClostridium_perfringens0.0730.001490.00318
speciesLactobacillus_delbrueckii0.0730.001510.00321
speciesDialister_succinatiphilus-0.0720.001860.00394
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0720.001890.00398
genusMegamonas0.0720.001950.00409
speciesClostridium_spiroforme0.0720.001960.00409
speciesMegamonas_unclassified0.0710.002010.00416
speciesPrevotella_copri-0.0710.002010.00416
speciesCoriobacteriaceae_bacterium_phI0.0710.002040.0042
speciesVeillonella_unclassified0.0710.002080.00427
speciesMegamonas_rupellensis0.0710.002190.00447
genusCoriobacteriaceae_noname0.0710.002280.00464
speciesAggregatibacter_segnis0.070.00230.00466
classGammaproteobacteria0.070.002320.00468
orderEnterobacteriales0.070.002340.00468
familyEnterobacteriaceae0.070.002340.00468
speciesHaemophilus_sputorum0.070.002510.005
genusKlebsiella0.0690.002650.00526
genusAnaerostipes0.0680.003130.00618
speciesCitrobacter_unclassified0.0680.003170.00623
speciesDialister_invisus0.0680.00330.00646
genusCitrobacter0.0670.003630.00708
speciesBifidobacterium_dentium0.0670.003860.0075
genusPrevotella-0.0660.00410.00793
speciesOscillibacter_sp_KLE_17280.0660.004250.00819
phylumProteobacteria0.0660.00450.00863
speciesBacteroides_nordii-0.0650.004770.00912
speciesButyrivibrio_unclassified-0.0650.005230.00995
genusPhascolarctobacterium-0.0630.006310.0119
speciesPhascolarctobacterium_succinatutens-0.0630.006310.0119
speciesCitrobacter_freundii0.0620.007610.0143
speciesLactobacillus_rhamnosus0.0610.007820.0146
speciesStreptococcus_pasteurianus0.0610.008240.0154
speciesCollinsella_unclassified0.0610.00840.0155
speciesStreptococcus_thermophilus0.0610.00840.0155
speciesLachnospiraceae_bacterium_5_1_63FAA0.060.008980.0166
speciesStreptococcus_infantarius0.060.009340.0172
speciesBifidobacterium_pseudocatenulatum0.060.010.0183
speciesParabacteroides_goldsteinii-0.0590.01050.0191
speciesKlebsiella_pneumoniae0.0590.01060.0192
speciesClostridium_sp_KLE_17550.0590.01070.0194
speciesKlebsiella_unclassified0.0590.01120.0202
speciesSubdoligranulum_sp_4_3_54A2FAA0.0580.01140.0205
speciesEubacterium_cylindroides-0.0570.01310.0234
familyPorphyromonadaceae-0.0570.01370.0244
familyPropionibacteriaceae0.0570.01380.0245
speciesBifidobacterium_breve0.0570.01430.0253
speciesBacteroides_stercoris0.0560.01490.0262
speciesClostridium_leptum-0.0560.01540.027
genusAdlercreutzia-0.0560.01570.0273
speciesAdlercreutzia_equolifaciens-0.0560.01570.0273
familyVeillonellaceae0.0550.01740.0302
speciesSutterella_wadsworthensis-0.0540.01980.0342
speciesLactobacillus_crispatus0.0540.02030.035
speciesBacteroides_vulgatus0.0540.02060.0354
speciesLactococcus_phage_936_sensu_lato-0.0530.02080.0354
speciesAcidaminococcus_intestini0.0530.02080.0354
speciesHaemophilus_paraphrohaemolyticus0.0530.02150.0365
speciesBacteroides_dorei-0.0530.02250.0381
speciesStreptococcus_salivarius0.0520.02430.041
speciesBacteroides_sp_2_1_220.0520.02570.0432
speciesOdoribacter_laneus-0.0510.02620.0439
familyAcidaminococcaceae-0.0510.02720.0454
speciesEubacterium_hallii-0.0510.02750.0457
genusParasutterella-0.0510.0280.0462
speciesParasutterella_excrementihominis-0.0510.0280.0462
speciesWeissella_cibaria0.0510.02810.0462
speciesBifidobacterium_angulatum-0.0510.02880.047
speciesBifidobacterium_animalis0.0510.02880.047
familySuccinivibrionaceae-0.050.02920.0475
speciesLactobacillus_reuteri0.050.02940.0477
genusHoldemania0.050.030.0485
familyLeuconostocaceae0.050.03090.0498
speciesLactobacillus_oris0.0490.03460.0555
genusSutterella-0.0490.03590.0574
genusSuccinatimonas-0.0480.03740.0594
speciesSuccinatimonas_hippei-0.0480.03740.0594
speciesLactobacillus_mucosae0.0480.03880.0615
speciesHoldemania_filiformis0.0470.04060.0641
speciesPeptostreptococcus_anaerobius0.0470.04270.0672
speciesLactobacillus_vaginalis0.0470.04310.0676
speciesBacteroides_coprophilus-0.0460.04550.0711
speciesBifidobacterium_longum0.0460.04580.0713
speciesCoprobacillus_sp_D60.0460.04720.0733
speciesBacteroides_finegoldii-0.0450.05340.0826
speciesMegamonas_hypermegale0.0450.0540.0833
genusPropionibacterium0.0450.05420.0833
familyLactobacillaceae0.0430.06210.095
familyStaphylococcaceae0.0430.06220.095
genusProteus0.0430.06250.0952
speciesLactococcus_phage_P680-0.0420.07050.107
genusWeissella0.0410.07590.115
speciesParabacteroides_sp_D13-0.0410.07710.116
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0410.07770.117
speciesLactococcus_garvieae0.0410.07960.119
orderPseudomonadales0.040.08030.12
speciesLactobacillus_casei_paracasei0.040.08150.121
speciesBacteroides_fluxus0.040.08320.123
phylumBacteroidetes0.040.08380.123
classBacteroidia0.040.08380.123
orderBacteroidales0.040.08380.123
genusLactobacillus0.040.08570.126
speciesBacteroides_salanitronis-0.0390.0890.13
genusRoseburia-0.0390.09010.131
speciesBacteroides_eggerthii-0.0390.09240.134
speciesProteus_mirabilis0.0380.09820.142
genusGordonibacter0.0380.09960.143
speciesGordonibacter_pamelaeae0.0380.09960.143
speciesPrevotella_bivia0.0370.1060.152
speciesBacteroides_xylanisolvens0.0370.110.157
speciesOscillibacter_sp_KLE_17450.0370.1110.158
speciesAlistipes_sp_HGB5-0.0370.1130.161
genusLeuconostoc0.0370.1140.161
genusBilophila-0.0370.1140.161
speciesAcidaminococcus_fermentans-0.0360.1150.162
speciesBilophila_unclassified-0.0360.1190.167
speciesStreptococcus_phage_Sfi210.0350.1340.188
phylumSynergistetes-0.0350.1360.188
classSynergistia-0.0350.1360.188
orderSynergistales-0.0350.1360.188
familySynergistaceae-0.0350.1360.188
genusMorganella0.0340.1410.194
speciesMorganella_morganii0.0340.1410.194
speciesParabacteroides_unclassified0.0340.1450.199
speciesLachnospiraceae_bacterium_1_1_57FAA0.0340.1460.2
genusDorea-0.0330.1480.202
speciesBacteroides_barnesiae-0.0330.1490.202
speciesBacteroides_massiliensis0.0330.1490.202
speciesRoseburia_inulinivorans-0.0330.1510.204
familyOscillospiraceae-0.0330.1540.207
genusOscillibacter-0.0330.1540.207
speciesHoldemania_sp_AP20.0330.1550.208
speciesBacteroides_thetaiotaomicron0.0320.1650.221
genusEnterobacter-0.0310.1780.237
speciesBifidobacterium_bifidum0.0310.180.239
familyPodoviridae0.0310.1810.24
speciesKlebsiella_sp_MS_92_30.0310.1850.245
familySutterellaceae-0.030.1890.249
speciesBacteroides_uniformis-0.030.190.25
genusStaphylococcus0.0290.2040.267
speciesRuminococcus_sp_JC3040.0290.2070.271
speciesBacteroides_salyersiae-0.0290.2080.271
speciesEubacterium_limosum0.0280.2190.285
speciesEnterobacter_aerogenes0.0280.2260.293
genusDialister0.0280.2340.303
speciesBacteroides_faecis-0.0270.2390.308
classNegativicutes0.0270.2420.31
orderSelenomonadales0.0270.2420.31
speciesOscillibacter_unclassified-0.0270.2420.31
genusPyramidobacter-0.0270.2460.313
speciesPyramidobacter_piscolens-0.0270.2460.313
speciesRoseburia_unclassified-0.0260.2560.325
familySiphoviridae0.0260.2610.33
orderBurkholderiales-0.0250.2750.347
genusBurkholderiales_noname-0.0250.2770.348
speciesBurkholderiales_bacterium_1_1_47-0.0250.2770.348
familyBurkholderiales_noname-0.0250.2890.362
speciesEnterobacter_cloacae-0.0250.290.362
genusRuminococcus-0.0240.2940.366
speciesHoldemania_unclassified-0.0240.2990.371
familyPeptostreptococcaceae0.0240.3090.382
genusRuminococcaceae_noname-0.0230.310.382
speciesRuminococcaceae_bacterium_D16-0.0230.310.382
speciesErysipelotrichaceae_bacterium_21_30.0230.3270.402
speciesAlistipes_unclassified0.0220.3340.409
genusSlackia0.0220.3480.426
orderCaudovirales0.0210.3530.431
speciesClostridium_bartlettii0.0210.3560.433
speciesCoprobacillus_sp_29_10.020.3760.456
orderBifidobacteriales0.020.3790.458
familyBifidobacteriaceae0.020.3790.458
orderViruses_noname0.020.3920.472
speciesBacteroides_clarus-0.020.3930.472
phylumActinobacteria0.020.3980.476
classActinobacteria0.020.3980.476
genusBifidobacterium0.0180.430.513
speciesPrevotella_stercorea0.0180.440.523
classBetaproteobacteria-0.0170.4560.54
speciesSutterella_parvirubra0.0170.4570.54
genusAcidaminococcaceae_unclassified-0.0170.4590.54
speciesLeuconostoc_lactis0.0170.4590.54
speciesBacteroides_caccae-0.0170.4650.546
speciesMegamonas_funiformis0.0160.4880.571
genusAcidaminococcus0.0160.4890.571
speciesLactococcus_phage_bIL670.0160.4930.575
genusSiphoviridae_noname0.0150.5220.607
genusHaemophilus0.0140.5340.619
speciesMegasphaera_unclassified0.0140.5430.628
speciesBacteroides_sp_3_1_19-0.0140.5470.63
speciesBacteroides_plebeius-0.0140.5470.63
orderPasteurellales0.0140.550.63
familyPasteurellaceae0.0140.550.63
genusErysipelotrichaceae_noname-0.0140.5520.631
speciesHaemophilus_parainfluenzae0.0140.5590.637
speciesBilophila_wadsworthia-0.0130.5810.66
genusPeptostreptococcaceae_noname0.0130.5820.66
speciesLactobacillus_acidophilus0.0120.6010.679
familyMyoviridae-0.0120.6020.679
genusC2likevirus0.0120.6030.679
speciesDorea_formicigenerans-0.0120.6070.682
speciesKlebsiella_phage_KP36-0.0120.6080.682
speciesTuricibacter_unclassified-0.0120.610.682
genusTuricibacter-0.0120.6160.687
genusMyoviridae_noname-0.0110.6210.691
speciesEscherichia_unclassified0.0110.6270.696
speciesWeissella_confusa0.0110.6290.697
speciesC2likevirus_unclassified0.010.6570.726
speciesBacteroides_coprocola-0.0090.690.761
speciesAlistipes_sp_AP11-0.0090.70.77
speciesPorphyromonas_uenonis0.0080.7160.786
speciesMegasphaera_elsdenii-0.0080.7190.787
speciesLactobacillus_amylovorus0.0080.7240.791
speciesLactococcus_phage_jm2-0.0080.7370.803
speciesDorea_unclassified0.0080.7380.803
speciesEnterobacteria_phage_HK5440.0070.760.825
genusLambdalikevirus0.0070.7650.826
orderCoriobacteriales-0.0070.7690.826
familyCoriobacteriaceae-0.0070.7690.826
phylumViruses_noname0.0070.770.826
classViruses_noname0.0070.770.826
speciesParabacteroides_johnsonii-0.0060.7890.844
speciesPeptostreptococcaceae_noname_unclassified-0.0060.8030.858
speciesLactobacillus_plantarum0.0050.8130.866
speciesLactococcus_phage_phi70.0050.8370.89
speciesCollinsella_tanakaei-0.0040.8520.904
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0040.8630.913
genusParabacteroides-0.0040.8680.917
genusSutterellaceae_unclassified-0.0040.8780.925
speciesAnaerostipes_hadrus-0.0030.8830.928
speciesLactobacillus_sanfranciscensis0.0030.8890.931
speciesBifidobacterium_catenulatum-0.0030.890.931
speciesOdoribacter_unclassified-0.0030.8940.934
speciesAcidaminococcus_unclassified0.0030.8960.934
speciesParabacteroides_distasonis-0.0030.910.946
orderAeromonadales-0.0020.9180.952
genusPorphyromonas-0.0020.9260.957
speciesTuricibacter_sanguinis-0.0020.9270.957
speciesPorphyromonas_asaccharolytica-0.0020.9360.965
speciesBacteroides_oleiciplenus-0.0020.9460.97
classErysipelotrichia-0.0010.9490.97
orderErysipelotrichales-0.0010.9490.97
familyErysipelotrichaceae-0.0010.9490.97
speciesPropionibacterium_freudenreichii-0.0010.9550.97
speciesRoseburia_intestinalis-0.0010.9550.97
speciesParabacteroides_sp_20_30.0010.9560.97
speciesBacteroides_sp_4_3_47FAA-0.0010.9720.985
genusTunalikevirus-0.0010.9770.985
speciesBacteroides_sp_1_1_6-0.0010.9770.985
familyViruses_noname0.00.990.994
genusViruses_noname0.00.990.994
speciesSlackia_piriformis0.00.9950.997
familyLachnospiraceae0.00.9990.999
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.002094751432390.0003309799150992.70874331614e-05415813.9676
Crohns diseaseSpain17660.00101430462820.0002517751294930.00047071229603329210.946
ObesityDenmark1691230.0001258559987737.57698817468e-050.0374832922549431814.1988
Rheumatoid arthritisChina127980.0006218991526740.001102037439690.2537415267271054035.1486
Type II diabetesChina1831850.001161149411860.000706449729660.337603042891719956.8393
Type II diabetesSweden53920.0002143088554019.19161807971e-050.3999015775711296143.891
Colorectal cancerAustria64350.003269526477840.0009858079305220.5784959989832007867.9321
Ulcerative colitisSpain78660.0004199380511020.0002517751294930.827370436352631886.818
Type II diabetesDenmark752779.8679435515e-050.0001056901795360.9282445163922915795.5748
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382