MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-05-15 23:19:53 PST
Job id & description: 1815, R gnavus 16S
Query type: dna
Count queries & homologs: 1, 1
Min % identity & max e-value: 98%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
16S909967unknownunknownFirmicutesunknown99.41100.099.93
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusBlautia0.6589.89e-2334.67e-230
familyLachnospiraceae0.5187.1e-1291.68e-126
speciesRuminococcus_gnavus0.5071.46e-1222.3e-120
genusEggerthella0.4258.75e-831.03e-80
phylumBacteroidetes-0.4242.67e-821.85e-80
classBacteroidia-0.4242.74e-821.85e-80
orderBacteroidales-0.4242.74e-821.85e-80
familyRikenellaceae-0.4142.13e-781.12e-76
genusAlistipes-0.4142.13e-781.12e-76
speciesCoprobacillus_unclassified0.4135.78e-782.73e-76
speciesRuminococcus_torques0.4121.7e-777.29e-76
familyStreptococcaceae0.4113.89e-771.43e-75
speciesEggerthella_unclassified0.4113.95e-771.43e-75
genusStreptococcus0.4093.92e-761.32e-74
speciesLachnospiraceae_bacterium_5_1_63FAA0.3951.03e-703.24e-69
genusCoprobacillus0.3942.27e-706.7e-69
genusLachnospiraceae_noname0.3882.23e-686.19e-67
familyPorphyromonadaceae-0.3878.93e-682.34e-66
classBacilli0.3823.38e-668.4e-65
orderLactobacillales0.3781.13e-642.67e-63
genusOdoribacter-0.3774.26e-649.57e-63
genusActinomyces0.3742.58e-635.54e-62
familyActinomycetaceae0.3736.07e-631.25e-61
genusAnaerostipes0.3731.05e-622.07e-61
speciesOdoribacter_splanchnicus-0.3713.14e-625.93e-61
speciesClostridium_ramosum0.378e-621.45e-60
speciesStreptococcus_salivarius0.3624.7e-598.22e-58
phylumFirmicutes0.3597.92e-581.34e-56
speciesRuminococcus_sp_5_1_39BFAA0.3421.83e-522.98e-51
speciesAlistipes_shahii-0.3391.61e-512.53e-50
classClostridia0.3361.22e-501.8e-49
orderClostridiales0.3361.22e-501.8e-49
orderActinomycetales0.3331.57e-492.25e-48
speciesLachnospiraceae_bacterium_1_4_56FAA0.3322.87e-493.98e-48
speciesEggerthella_lenta0.337.11e-499.59e-48
familyBacillales_noname0.3276.26e-487.99e-47
genusGemella0.3276.26e-487.99e-47
speciesLachnospiraceae_bacterium_9_1_43BFAA0.3261.21e-471.5e-46
orderBacillales0.3261.7e-472.06e-46
genusSolobacterium0.328.76e-461.01e-44
speciesSolobacterium_moorei0.328.76e-461.01e-44
speciesAlistipes_putredinis-0.3161.63e-441.83e-43
speciesStreptococcus_sanguinis0.3152.3e-442.52e-43
genusParabacteroides-0.3082.07e-422.22e-41
speciesRuminococcus_obeum0.3082.96e-423.1e-41
genusDorea0.3051.15e-411.18e-40
speciesDorea_formicigenerans0.3012.39e-402.4e-39
familyBacteroidales_noname-0.2988.84e-408.34e-39
genusBacteroidales_noname-0.2988.84e-408.34e-39
speciesBacteroidales_bacterium_ph8-0.2988.84e-408.34e-39
orderCoriobacteriales0.2941.71e-381.55e-37
familyCoriobacteriaceae0.2941.71e-381.55e-37
speciesClostridium_bolteae0.2924.12e-383.67e-37
speciesBlautia_producta0.2919.05e-387.91e-37
speciesAnaerostipes_hadrus0.2812.43e-352.09e-34
speciesAlistipes_senegalensis-0.2797.81e-356.58e-34
speciesStreptococcus_mitis_oralis_pneumoniae0.2781.82e-341.51e-33
speciesStreptococcus_parasanguinis0.2773.57e-342.91e-33
speciesLachnospiraceae_bacterium_2_1_58FAA0.2763.98e-343.18e-33
speciesStreptococcus_australis0.2751.1e-338.65e-33
phylumActinobacteria0.2741.2e-339.14e-33
classActinobacteria0.2741.2e-339.14e-33
speciesParabacteroides_merdae-0.2717.88e-335.9e-32
speciesClostridium_nexile0.271.49e-321.1e-31
familyPeptostreptococcaceae0.2692.73e-321.98e-31
speciesLachnospiraceae_bacterium_6_1_63FAA0.2634.84e-313.46e-30
speciesEubacterium_hallii0.2636.4e-314.51e-30
genusClostridium0.263.23e-302.24e-29
familyClostridiaceae0.2594.41e-303.02e-29
genusPeptostreptococcaceae_noname0.2562.87e-291.94e-28
speciesAlistipes_finegoldii-0.254.05e-282.69e-27
speciesRothia_mucilaginosa0.2481.38e-279.05e-27
speciesAnaerotruncus_unclassified-0.2449.08e-275.87e-26
familyFusobacteriaceae0.2431.57e-261e-25
genusFusobacterium0.2422.84e-261.79e-25
genusOxalobacter-0.2414.88e-262.99e-25
speciesOxalobacter_formigenes-0.2414.88e-262.99e-25
phylumFusobacteria0.2398.91e-265.26e-25
classFusobacteriia0.2398.91e-265.26e-25
orderFusobacteriales0.2398.91e-265.26e-25
genusRothia0.2381.68e-259.79e-25
familyMicrococcaceae0.2381.91e-251.1e-24
familyOscillospiraceae-0.2364.14e-252.33e-24
genusOscillibacter-0.2364.14e-252.33e-24
familyOxalobacteraceae-0.2364.34e-252.41e-24
speciesStreptococcus_anginosus0.2315.31e-242.91e-23
speciesAlistipes_indistinctus-0.236.72e-243.65e-23
genusRuminococcus0.236.81e-243.65e-23
speciesOscillibacter_unclassified-0.2281.72e-239.12e-23
speciesStreptococcus_vestibularis0.2282.15e-231.13e-22
genusPeptostreptococcus0.2154.6e-212.39e-20
orderBurkholderiales-0.2155.77e-212.96e-20
classBetaproteobacteria-0.2131.33e-206.75e-20
speciesClostridium_clostridioforme0.2096.78e-203.4e-19
familySutterellaceae-0.2088.48e-204.21e-19
genusBarnesiella-0.2089.67e-204.71e-19
speciesBarnesiella_intestinihominis-0.2089.67e-204.71e-19
speciesClostridium_symbiosum0.2071.43e-196.89e-19
speciesErysipelotrichaceae_bacterium_2_2_44A0.2062.53e-191.21e-18
orderEnterobacteriales0.2021.24e-185.79e-18
familyEnterobacteriaceae0.2021.24e-185.79e-18
speciesClostridium_bartlettii0.2021.3e-186.02e-18
genusAnaerotruncus-0.2011.65e-187.56e-18
familyPrevotellaceae-0.2011.81e-188.21e-18
speciesStreptococcus_thermophilus0.2011.86e-188.36e-18
genusEscherichia0.22.33e-181.04e-17
speciesStreptococcus_gordonii0.1985.78e-182.55e-17
familyEnterococcaceae0.1961.05e-174.59e-17
genusEnterococcus0.1961.32e-175.72e-17
classErysipelotrichia0.1933.39e-171.43e-16
orderErysipelotrichales0.1933.39e-171.43e-16
familyErysipelotrichaceae0.1933.39e-171.43e-16
speciesEscherichia_coli0.1933.65e-171.52e-16
speciesAlistipes_onderdonkii-0.1934.53e-171.88e-16
orderBifidobacteriales0.1925.05e-172.05e-16
familyBifidobacteriaceae0.1925.05e-172.05e-16
speciesBacteroides_uniformis-0.1925.91e-172.38e-16
classGammaproteobacteria0.191.15e-164.6e-16
genusGordonibacter0.1891.66e-166.53e-16
speciesGordonibacter_pamelaeae0.1891.66e-166.53e-16
genusBifidobacterium0.1882.73e-161.06e-15
speciesBifidobacterium_longum0.1873.32e-161.28e-15
speciesAnaerostipes_unclassified0.1873.66e-161.4e-15
speciesLachnospiraceae_bacterium_5_1_57FAA0.1873.69e-161.4e-15
genusDesulfovibrio-0.1831.37e-155.17e-15
speciesEubacterium_siraeum-0.1813.19e-151.19e-14
familyLeuconostocaceae0.184.83e-151.8e-14
speciesStreptococcus_mutans0.1796.97e-152.57e-14
speciesClostridium_hathewayi0.1771.35e-144.94e-14
genusButyricimonas-0.1743.02e-141.09e-13
speciesButyricimonas_synergistica-0.1743.02e-141.09e-13
speciesDorea_longicatena0.1743.07e-141.1e-13
genusVeillonella0.1735.74e-142.04e-13
genusLeuconostoc0.1727.12e-142.51e-13
genusRoseburia0.1719.21e-143.22e-13
speciesSubdoligranulum_unclassified-0.1711.12e-133.89e-13
speciesClostridiales_bacterium_1_7_47FAA0.1691.87e-136.44e-13
genusCoprobacter-0.1682.59e-138.79e-13
speciesCoprobacter_fastidiosus-0.1682.59e-138.79e-13
genusPseudoflavonifractor-0.1682.67e-138.94e-13
speciesPseudoflavonifractor_capillosus-0.1682.67e-138.94e-13
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1656.24e-132.07e-12
genusSubdoligranulum-0.1657.32e-132.42e-12
speciesFusobacterium_ulcerans0.1641.01e-123.31e-12
familyLactobacillaceae0.1612.28e-127.42e-12
speciesLactobacillus_delbrueckii0.163.55e-121.15e-11
speciesVeillonella_parvula0.1594.56e-121.46e-11
speciesAlistipes_sp_AP11-0.1594.59e-121.46e-11
speciesMitsuokella_unclassified-0.1577.49e-122.37e-11
speciesPeptostreptococcus_stomatis0.1577.94e-122.5e-11
speciesParaprevotella_xylaniphila-0.1578.05e-122.52e-11
speciesEubacterium_ramulus0.1551.85e-115.74e-11
speciesDesulfovibrio_desulfuricans-0.1542.05e-116.32e-11
genusAdlercreutzia0.1532.56e-117.8e-11
speciesAdlercreutzia_equolifaciens0.1532.56e-117.8e-11
genusMitsuokella-0.1532.91e-118.8e-11
speciesEubacterium_dolichum0.1533.05e-119.17e-11
speciesBacteroides_caccae-0.1523.84e-111.15e-10
genusLactobacillus0.1523.98e-111.18e-10
familyClostridiales_Family_XI_Incertae_Sedis0.157.19e-112.12e-10
genusPrevotella-0.1499.42e-112.76e-10
speciesGemella_morbillorum0.1481.24e-103.61e-10
speciesVeillonella_unclassified0.1462.04e-105.91e-10
speciesFusobacterium_varium0.1453.02e-108.69e-10
speciesCoprococcus_comes0.1444.28e-101.22e-09
genusButyrivibrio-0.1435.68e-101.62e-09
speciesPrevotella_copri-0.1427.18e-102.03e-09
speciesMegasphaera_micronuciformis0.1427.66e-102.15e-09
speciesSutterella_wadsworthensis-0.1418.55e-102.39e-09
speciesLactobacillus_ruminis-0.1419.17e-102.55e-09
speciesErysipelotrichaceae_bacterium_3_1_530.1419.24e-102.55e-09
classMethanobacteria-0.141.2e-093.26e-09
orderMethanobacteriales-0.141.2e-093.26e-09
familyMethanobacteriaceae-0.141.2e-093.26e-09
phylumEuryarchaeota-0.1391.48e-093.97e-09
genusCatenibacterium-0.1391.49e-093.97e-09
speciesCatenibacterium_mitsuokai-0.1391.49e-093.97e-09
speciesBifidobacterium_dentium0.1391.59e-094.22e-09
speciesEggerthella_sp_1_3_56FAA0.1391.77e-094.67e-09
speciesLachnospiraceae_bacterium_2_1_46FAA0.1372.47e-096.48e-09
speciesLactobacillus_rhamnosus0.1372.55e-096.65e-09
speciesEnterococcus_faecalis0.1372.85e-097.39e-09
familyRuminococcaceae0.1373.09e-097.97e-09
genusSutterella-0.1363.86e-099.87e-09
speciesBlautia_hydrogenotrophica0.1363.87e-099.87e-09
speciesFusobacterium_nucleatum0.1364e-091.02e-08
speciesErysipelotrichaceae_bacterium_6_1_450.1354.13e-091.04e-08
speciesClostridium_citroniae0.1354.43e-091.11e-08
genusMethanobrevibacter-0.1345.71e-091.43e-08
speciesMethanobrevibacter_smithii-0.1346.05e-091.5e-08
speciesPropionibacterium_freudenreichii0.1346.46e-091.6e-08
speciesCoprococcus_sp_ART55_1-0.1337.9e-091.94e-08
genusLactococcus0.1311.33e-083.25e-08
genusKlebsiella0.131.76e-084.28e-08
familyBacteroidaceae-0.1292.18e-085.25e-08
genusBacteroides-0.1292.18e-085.25e-08
genusPropionibacterium0.1292.19e-085.25e-08
speciesEscherichia_unclassified0.1282.79e-086.65e-08
speciesBacteroides_ovatus-0.1273.35e-087.95e-08
speciesCitrobacter_unclassified0.1264.89e-081.15e-07
speciesLactococcus_lactis0.1256.59e-081.55e-07
speciesDesulfovibrio_piger-0.1246.64e-081.55e-07
speciesButyrivibrio_crossotus-0.1247.7e-081.79e-07
speciesRuminococcus_sp_JC3040.1248.4e-081.94e-07
genusRuminococcaceae_noname-0.1239.37e-082.15e-07
speciesRuminococcaceae_bacterium_D16-0.1239.37e-082.15e-07
speciesOscillibacter_sp_KLE_1728-0.1221.25e-072.85e-07
familyAcidaminococcaceae-0.1221.27e-072.88e-07
genusParasutterella-0.1221.36e-073.06e-07
speciesParasutterella_excrementihominis-0.1221.36e-073.06e-07
speciesBifidobacterium_animalis0.1211.38e-073.09e-07
genusErysipelotrichaceae_noname0.1211.47e-073.27e-07
speciesMethanobrevibacter_unclassified-0.1211.54e-073.41e-07
speciesEnterococcus_faecium0.121.81e-073.99e-07
speciesAlistipes_sp_HGB5-0.1192.2e-074.83e-07
genusClostridiales_noname0.1192.29e-075e-07
speciesErysipelotrichaceae_bacterium_21_30.1183.33e-077.24e-07
speciesClostridium_sp_L2_50-0.1173.85e-078.34e-07
genusCitrobacter0.1174.29e-079.25e-07
genusHoldemania0.1164.91e-071.05e-06
speciesFusobacterium_mortiferum0.1165.16e-071.1e-06
genusParaprevotella-0.1156.34e-071.35e-06
speciesVeillonella_atypica0.1156.49e-071.37e-06
speciesParaprevotella_unclassified-0.1156.61e-071.39e-06
speciesRuminococcus_champanellensis-0.1147.84e-071.64e-06
speciesRuminococcus_callidus-0.1148.57e-071.79e-06
speciesBacteroides_xylanisolvens-0.1148.62e-071.79e-06
speciesLactobacillus_casei_paracasei0.1138.88e-071.84e-06
speciesRoseburia_inulinivorans0.1139.1e-071.87e-06
genusFlavonifractor0.1139.14e-071.87e-06
speciesFlavonifractor_plautii0.1139.14e-071.87e-06
speciesC2likevirus_unclassified-0.1121.19e-062.42e-06
speciesLachnospiraceae_bacterium_1_1_57FAA0.1121.22e-062.47e-06
speciesMitsuokella_multacida-0.1121.27e-062.56e-06
speciesEubacterium_eligens-0.1111.42e-062.85e-06
genusC2likevirus-0.1111.45e-062.9e-06
speciesCitrobacter_freundii0.1111.56e-063.11e-06
speciesParaprevotella_clara-0.1111.57e-063.11e-06
genusAcidaminococcaceae_unclassified-0.1092.46e-064.86e-06
speciesLactobacillus_plantarum0.1082.86e-065.62e-06
speciesBacteroides_cellulosilyticus-0.1082.91e-065.7e-06
speciesEubacterium_biforme-0.1073.84e-067.49e-06
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1073.87e-067.52e-06
genusMorganella0.1055.19e-061e-05
speciesMorganella_morganii0.1055.19e-061e-05
speciesParabacteroides_distasonis-0.1055.52e-061.06e-05
speciesKlebsiella_pneumoniae0.1055.69e-061.09e-05
speciesClostridium_perfringens0.1046.72e-061.28e-05
speciesRoseburia_hominis-0.1011.22e-052.31e-05
speciesPeptostreptococcaceae_noname_unclassified0.11.37e-052.59e-05
speciesLactobacillus_fermentum0.11.47e-052.76e-05
genusSutterellaceae_unclassified-0.11.51e-052.83e-05
familyEubacteriaceae0.0991.65e-053.08e-05
genusEubacterium0.0991.73e-053.21e-05
genusPantoea0.0981.99e-053.67e-05
speciesPantoea_unclassified0.0981.99e-053.67e-05
familyMyoviridae0.0972.44e-054.48e-05
speciesKlebsiella_oxytoca0.0972.68e-054.9e-05
speciesClostridium_asparagiforme0.0972.74e-054.99e-05
genusParvimonas0.0962.98e-055.39e-05
speciesParvimonas_unclassified0.0962.98e-055.39e-05
speciesRoseburia_unclassified-0.0962.99e-055.39e-05
phylumProteobacteria0.0963.35e-056.01e-05
speciesVeillonella_dispar0.0963.42e-056.11e-05
familyStaphylococcaceae0.0953.61e-056.43e-05
speciesCoprococcus_catus0.0944.9e-058.69e-05
speciesBacteroides_vulgatus-0.0935.21e-059.21e-05
speciesBacteroides_faecis-0.0935.59e-059.85e-05
speciesBifidobacterium_pseudocatenulatum0.0926.97e-050.000122
speciesStreptococcus_lutetiensis0.0927.29e-050.000127
speciesBacteroides_coprophilus-0.0927.34e-050.000128
familyBurkholderiales_noname-0.0917.6e-050.000132
genusWeissella0.0918.43e-050.000146
speciesHoldemania_sp_AP20.0918.56e-050.000147
genusBurkholderiales_noname-0.0918.84e-050.000151
speciesBurkholderiales_bacterium_1_1_47-0.0918.84e-050.000151
speciesHaemophilus_sputorum0.099.71e-050.000165
genusFaecalibacterium0.099.84e-050.000166
speciesFaecalibacterium_prausnitzii0.099.84e-050.000166
speciesLactobacillus_gasseri0.090.00010.000169
speciesParabacteroides_sp_D13-0.0890.0001130.00019
phylumVerrucomicrobia-0.0890.0001190.000196
classVerrucomicrobiae-0.0890.0001190.000196
orderVerrucomicrobiales-0.0890.0001190.000196
familyVerrucomicrobiaceae-0.0890.0001190.000196
genusAkkermansia-0.0890.0001190.000196
speciesAkkermansia_muciniphila-0.0890.0001190.000196
genusStaphylococcus0.0870.0001650.00027
speciesWeissella_cibaria0.0870.0001670.000273
classDeltaproteobacteria-0.0870.0001790.000289
orderDesulfovibrionales-0.0870.0001790.000289
familyDesulfovibrionaceae-0.0870.0001790.000289
genusProteus0.0860.0001960.000316
speciesCampylobacter_concisus0.0860.0001970.000316
speciesAcidaminococcus_fermentans-0.0860.0002010.000322
genusAggregatibacter0.0840.0002630.000419
speciesParabacteroides_goldsteinii-0.0840.0002840.00045
speciesBacteroides_dorei-0.0840.0002840.00045
speciesPeptostreptococcus_anaerobius0.0840.000290.000458
genusButyricicoccus0.0830.0003180.000499
speciesButyricicoccus_pullicaecorum0.0830.0003180.000499
speciesOscillibacter_sp_KLE_1745-0.0830.0003470.000542
speciesKlebsiella_unclassified0.0820.0003720.000579
genusMyoviridae_noname0.0820.0003820.000593
speciesEubacterium_sp_3_1_310.0810.0004230.000655
genusCollinsella0.0810.0004820.000743
speciesCoprococcus_eutactus-0.0810.0004880.00075
speciesProteus_mirabilis0.080.0005490.000841
speciesEnterobacteria_phage_HK5440.0780.0007380.00113
speciesTuricibacter_sanguinis0.0770.0008680.00132
speciesDorea_unclassified-0.0760.0009330.00142
familyClostridiales_noname0.0750.001230.00186
speciesBacteroides_salanitronis-0.0740.001340.00202
speciesBacteroides_pectinophilus-0.0730.001640.00247
speciesBifidobacterium_angulatum-0.0720.001760.00264
speciesOlsenella_unclassified-0.0720.001870.00279
genusAcidaminococcus-0.0720.00190.00283
familyPropionibacteriaceae0.0710.002090.0031
speciesCollinsella_aerofaciens0.0710.002260.00334
speciesLactobacillus_vaginalis0.070.002510.00369
speciesLactobacillus_salivarius0.070.002510.00369
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0690.002640.00387
speciesAggregatibacter_segnis0.0690.002660.00389
genusEnterobacter0.0690.003020.0044
speciesStreptococcus_pasteurianus0.0680.003040.00442
speciesLactococcus_garvieae0.0670.00370.00536
speciesEnterobacter_cloacae0.0670.003860.00557
speciesBacteroides_nordii-0.0670.00390.00561
speciesEnterobacter_aerogenes0.0670.003980.00571
genusCoprococcus0.0660.004030.00576
genusMethanosphaera-0.0650.004730.0067
speciesCollinsella_unclassified-0.0650.004730.0067
speciesMethanosphaera_stadtmanae-0.0650.004730.0067
orderPseudomonadales0.0650.005190.00733
speciesRoseburia_intestinalis0.0640.005470.00771
genusPhascolarctobacterium-0.0640.005570.0078
speciesPhascolarctobacterium_succinatutens-0.0640.005570.0078
genusSuccinatimonas-0.0630.006420.00894
speciesSuccinatimonas_hippei-0.0630.006420.00894
speciesPrevotella_buccae0.0630.006740.00936
speciesStreptococcus_infantarius0.0620.007260.01
speciesLactococcus_phage_936_sensu_lato-0.0610.007920.0109
genusPeptoniphilus0.0610.008010.011
speciesWeissella_confusa0.0610.008820.0121
speciesLeuconostoc_lactis0.0610.008870.0121
speciesLactobacillus_acidophilus0.060.009270.0126
speciesDialister_invisus0.060.009830.0133
speciesBacteroides_thetaiotaomicron-0.060.009830.0133
speciesClostridium_spiroforme0.0590.01120.0151
speciesPorphyromonas_asaccharolytica-0.0590.01130.0152
speciesBifidobacterium_adolescentis-0.0590.01130.0152
speciesClostridium_sp_KLE_17550.0580.01170.0157
speciesKlebsiella_sp_MS_92_30.0580.01190.0159
familySuccinivibrionaceae-0.0580.01210.0161
speciesButyrivibrio_unclassified-0.0580.01250.0166
speciesStreptococcus_phage_Sfi210.0570.01340.0178
speciesBacteroides_stercoris-0.0570.01420.0188
speciesHaemophilus_paraphrohaemolyticus0.0560.01460.0192
genusTuricibacter0.0560.01470.0193
speciesBacteroides_fragilis0.0560.01610.0211
speciesLactobacillus_oris0.0550.01770.0231
genusActinobacillus0.0540.02060.0268
speciesActinobacillus_unclassified0.0540.02060.0268
speciesClostridium_leptum-0.0540.02070.0268
speciesAcidaminococcus_unclassified-0.0530.02170.0281
speciesMegasphaera_unclassified-0.0530.02280.0294
speciesEubacterium_limosum0.0520.02320.0298
speciesMegasphaera_elsdenii-0.0520.02390.0307
speciesBacteroides_sp_1_1_6-0.0520.02540.0325
speciesLactobacillus_sanfranciscensis0.0510.02730.0348
speciesDialister_succinatiphilus-0.0510.02760.0351
speciesClostridium_sp_ATCC_BAA_4420.0510.02830.0359
speciesBilophila_unclassified-0.050.0290.0367
speciesRuminococcus_bromii0.050.03230.0408
genusBilophila-0.0490.03510.0442
speciesTuricibacter_unclassified0.0480.03740.0469
speciesCollinsella_intestinalis0.0470.04060.0508
speciesBacteroides_finegoldii-0.0470.04140.0517
speciesMegamonas_unclassified0.0460.04580.057
genusMegamonas0.0460.04650.0578
genusCoriobacteriaceae_noname0.0450.05040.0624
speciesLactobacillus_crispatus0.0450.05340.0659
speciesCoriobacteriaceae_bacterium_phI0.0450.05350.0659
genusPorphyromonas-0.0430.06170.0758
speciesLactobacillus_reuteri0.0410.07630.0935
familySiphoviridae-0.0410.07650.0935
orderAeromonadales-0.0410.07710.094
speciesHoldemania_filiformis0.0410.07930.0965
genusSiphoviridae_noname0.040.0840.102
speciesBacteroides_sp_4_3_47FAA-0.040.08650.105
speciesBacteroides_intestinalis-0.0390.08980.108
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0380.1030.124
speciesEubacterium_ventriosum0.0370.1070.129
speciesBacteroides_plebeius-0.0370.1110.133
genusOlsenella-0.0370.1130.135
speciesBifidobacterium_catenulatum0.0360.1180.141
speciesBacteroides_sp_2_1_22-0.0360.120.143
familyViruses_noname0.0350.1250.148
genusViruses_noname0.0350.1250.148
phylumSynergistetes-0.0350.1270.149
classSynergistia-0.0350.1270.149
orderSynergistales-0.0350.1270.149
familySynergistaceae-0.0350.1270.149
familyVeillonellaceae0.0340.1360.159
genusClostridiaceae_noname0.0340.1370.159
speciesClostridiaceae_bacterium_JC1180.0340.1370.159
speciesSutterella_parvirubra0.0340.1410.164
speciesParabacteroides_johnsonii-0.0330.150.174
speciesMegamonas_funiformis-0.0330.1520.175
speciesCoprobacillus_sp_D60.0330.1560.18
genusCampylobacter0.0320.1610.184
speciesBilophila_wadsworthia-0.0320.1610.184
familyCampylobacteraceae0.0320.1710.195
speciesRuminococcus_lactaris-0.0310.1850.211
speciesEubacterium_cylindroides-0.030.20.227
speciesAnaerotruncus_colihominis0.0290.2050.233
speciesLactobacillus_amylovorus0.0290.2160.244
speciesSubdoligranulum_sp_4_3_54A2FAA0.0280.2190.247
genusPyramidobacter-0.0280.2230.251
speciesPyramidobacter_piscolens-0.0280.2230.251
speciesLactobacillus_mucosae0.0270.2440.274
speciesCollinsella_tanakaei-0.0270.250.28
speciesBacteroides_barnesiae-0.0260.2580.288
speciesAlistipes_unclassified0.0260.2680.298
speciesLactococcus_phage_P6800.0250.2710.301
speciesBifidobacterium_breve0.0250.2770.307
speciesLactococcus_phage_phi7-0.0240.290.321
classNegativicutes-0.0230.3110.342
orderSelenomonadales-0.0230.3110.342
orderViruses_noname0.0230.3270.359
genusDialister0.0220.3330.365
speciesOdoribacter_unclassified-0.0220.3420.374
speciesPrevotella_bivia0.0210.3660.399
speciesMegamonas_rupellensis0.020.3760.409
genusHaemophilus0.020.3810.413
orderPasteurellales0.0190.40.432
familyPasteurellaceae0.0190.40.432
speciesHaemophilus_parainfluenzae0.0190.4050.436
genusLambdalikevirus0.0190.4130.443
classEpsilonproteobacteria0.0190.4140.443
orderCampylobacterales0.0190.4140.443
speciesPrevotella_stercorea-0.0190.4230.452
speciesLactococcus_phage_jm20.0180.4370.466
speciesAcidaminococcus_intestini-0.0170.4540.483
genusSlackia0.0170.4690.497
speciesPorphyromonas_uenonis-0.0160.4790.507
speciesBacteroides_oleiciplenus0.0160.4860.513
speciesHoldemania_unclassified0.0150.5060.532
speciesBacteroides_eggerthii-0.0150.5060.532
speciesParabacteroides_unclassified0.0150.5070.532
familyPodoviridae-0.0140.5470.572
speciesEubacterium_rectale-0.0140.5520.576
speciesKlebsiella_phage_KP36-0.0130.5840.608
speciesCoprobacillus_sp_29_1-0.0120.5960.62
orderCaudovirales-0.0110.6240.647
speciesParabacteroides_sp_20_3-0.0110.6340.656
speciesBifidobacterium_bifidum-0.010.6620.684
speciesMegamonas_hypermegale-0.010.6650.685
speciesBacteroides_salyersiae0.010.6780.697
genusMegasphaera0.0090.7050.723
speciesBacteroides_fluxus0.0090.7070.724
speciesBacteroides_sp_3_1_190.0080.7260.742
speciesOdoribacter_laneus-0.0080.7330.747
speciesBacteroides_clarus-0.0060.810.824
speciesLactococcus_phage_bIL670.0040.8460.859
phylumViruses_noname0.0040.8580.867
classViruses_noname0.0040.8580.867
speciesBacteroides_massiliensis-0.0040.8740.881
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0030.9040.909
speciesBacteroides_coprocola0.0030.9050.909
genusTunalikevirus-0.0020.9170.919
speciesSlackia_piriformis0.0010.9710.971
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.08744987910650.04230762441149.67722331085e-0519056.33416
Liver cirrhosisChina1201140.07303241812710.04815324823520.00154054966998793026.6384
Type II diabetesSweden53920.07588629912150.068119138640.02382258706249043.06129
Type II diabetesDenmark752770.02882695897350.03362512577650.0638931551053806226.4267
Ulcerative colitisSpain78660.04811017917530.04230762441140.3367263753271488049.0862
Colorectal cancerAustria64350.1272123420990.1547732018370.4891451080881795660.7525
Type II diabetesChina1831850.06834522600090.07321040349110.51697021682142270.7955
ObesityDenmark1691230.03419129205870.03398309816330.7286912101712467181.1253
Rheumatoid arthritisChina127980.07396055843280.07463888477630.7764074423122432681.1218
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382