MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-05-19 04:23:07 PST
Job id & description: 1845, test1_highcutoff
Query type: protein
Count queries & homologs: 1, 2
Min % identity & max e-value: 70%, 1e-20
Min % query & target coverage: 90%, 90%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
6450246523555754CompleteK04114COG1924ActinobacteriaEggerthella100.099.6195.69
6450246523586781CompleteK04114COG1924unknownunknown95.6996.8570.85
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEggerthella_unclassified0.6425.29e-2182.5e-215
genusEggerthella0.6412.66e-2176.28e-215
speciesEggerthella_lenta0.4973.58e-1175.63e-115
genusGordonibacter0.3252.55e-472.41e-45
speciesGordonibacter_pamelaeae0.3252.55e-472.41e-45
genusCoprobacillus0.3122e-431.57e-41
speciesLachnospiraceae_bacterium_5_1_57FAA0.3012.11e-401.42e-38
speciesCoprobacillus_unclassified0.2981.1e-396.49e-38
speciesClostridium_ramosum0.2845.82e-363.05e-34
speciesClostridium_symbiosum0.2772.35e-341.11e-32
speciesClostridium_bolteae0.2772.6e-341.12e-32
speciesLachnospiraceae_bacterium_1_4_56FAA0.2732.92e-331.15e-31
speciesErysipelotrichaceae_bacterium_2_2_44A0.2684e-321.45e-30
speciesBlautia_producta0.2675.65e-321.9e-30
speciesRuminococcus_gnavus0.2652.13e-316.7e-30
speciesClostridium_hathewayi0.262.86e-308.44e-29
speciesClostridium_clostridioforme0.2586.63e-301.84e-28
genusBlautia0.2571.37e-293.59e-28
orderCoriobacteriales0.2548.13e-291.92e-27
familyCoriobacteriaceae0.2548.13e-291.92e-27
speciesClostridium_citroniae0.247.41e-261.67e-24
genusActinomyces0.2399.28e-261.99e-24
familyActinomycetaceae0.2399.77e-262e-24
speciesErysipelotrichaceae_bacterium_6_1_450.2222.84e-225.59e-21
orderActinomycetales0.2223.17e-225.98e-21
speciesAlistipes_senegalensis-0.2199.84e-221.79e-20
speciesClostridiales_bacterium_1_7_47FAA0.2181.39e-212.31e-20
genusSolobacterium0.2181.42e-212.31e-20
speciesSolobacterium_moorei0.2181.42e-212.31e-20
familySutterellaceae-0.2181.51e-212.38e-20
orderBacillales0.2071.72e-192.62e-18
phylumActinobacteria0.2062e-192.86e-18
classActinobacteria0.2062e-192.86e-18
speciesRuminococcus_sp_5_1_39BFAA0.2062.51e-193.48e-18
familyBacillales_noname0.2011.95e-182.56e-17
genusGemella0.2011.95e-182.56e-17
speciesRuminococcus_torques0.22.97e-183.79e-17
genusFlavonifractor0.1985.57e-186.74e-17
speciesFlavonifractor_plautii0.1985.57e-186.74e-17
speciesEggerthella_sp_1_3_56FAA0.1978.33e-189.83e-17
classBetaproteobacteria-0.1961.29e-171.49e-16
genusLachnospiraceae_noname0.1942.41e-172.71e-16
speciesErysipelotrichaceae_bacterium_21_30.1942.9e-173.18e-16
orderBurkholderiales-0.1933.45e-173.7e-16
speciesAnaerotruncus_colihominis0.1916.83e-177.16e-16
speciesEubacterium_sp_3_1_310.199.99e-171.03e-15
speciesDialister_invisus0.1882.76e-162.77e-15
speciesLachnospiraceae_bacterium_6_1_63FAA0.1882.87e-162.82e-15
familyPrevotellaceae-0.1864.47e-164.31e-15
speciesAlistipes_shahii-0.1831.53e-151.44e-14
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1821.82e-151.68e-14
familyClostridiales_Family_XI_Incertae_Sedis0.183.98e-153.61e-14
speciesStreptococcus_sanguinis0.184.58e-154.08e-14
speciesClostridium_asparagiforme0.1796.6e-155.77e-14
genusClostridium0.1789.75e-158.23e-14
familyClostridiaceae0.1789.77e-158.23e-14
genusAnaerostipes0.1727.86e-146.51e-13
speciesLachnospiraceae_bacterium_5_1_63FAA0.1728.1e-146.59e-13
genusOdoribacter-0.1691.83e-131.46e-12
speciesSubdoligranulum_sp_4_3_54A2FAA0.1673.15e-132.47e-12
speciesEubacterium_biforme-0.1673.19e-132.47e-12
genusPropionibacterium0.1665.04e-133.84e-12
speciesStreptococcus_mitis_oralis_pneumoniae0.1665.23e-133.92e-12
speciesOdoribacter_splanchnicus-0.1649.88e-137.29e-12
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1622.12e-121.54e-11
familyClostridiales_noname0.1612.47e-121.77e-11
speciesEubacterium_eligens-0.163e-122.11e-11
speciesParaprevotella_xylaniphila-0.163.34e-122.32e-11
genusRuminococcus0.163.44e-122.34e-11
speciesAlistipes_indistinctus-0.163.47e-122.34e-11
speciesParaprevotella_unclassified-0.1595.1e-123.39e-11
genusParaprevotella-0.1595.32e-123.49e-11
genusOxalobacter-0.1586.07e-123.87e-11
speciesOxalobacter_formigenes-0.1586.07e-123.87e-11
speciesAnaerostipes_unclassified0.1579e-125.66e-11
genusPeptostreptococcus0.1561.22e-117.58e-11
genusClostridiales_noname0.1551.82e-111.12e-10
speciesDesulfovibrio_piger-0.1533.07e-111.86e-10
familyOxalobacteraceae-0.1523.79e-112.26e-10
speciesClostridium_sp_KLE_17550.1524.34e-112.56e-10
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1514.58e-112.67e-10
familyStreptococcaceae0.1514.95e-112.85e-10
genusStreptococcus0.156.38e-113.63e-10
genusCoprobacter-0.158.1e-114.5e-10
speciesCoprobacter_fastidiosus-0.158.1e-114.5e-10
speciesErysipelotrichaceae_bacterium_3_1_530.1498.61e-114.73e-10
genusParvimonas0.1498.78e-114.76e-10
speciesParvimonas_unclassified0.1498.99e-114.82e-10
speciesParabacteroides_merdae-0.1499.35e-114.96e-10
classBacilli0.1481.28e-106.71e-10
speciesBlautia_hydrogenotrophica0.1471.57e-108.14e-10
speciesCoprococcus_sp_ART55_1-0.1471.66e-108.52e-10
speciesBifidobacterium_longum0.1471.7e-108.63e-10
orderLactobacillales0.1471.72e-108.64e-10
genusHoldemania0.1462.34e-101.16e-09
familyAcidaminococcaceae-0.1453.38e-101.66e-09
speciesClostridium_nexile0.1443.82e-101.86e-09
speciesEubacterium_siraeum-0.1444.37e-102.1e-09
genusButyrivibrio-0.1418.42e-104.01e-09
genusPhascolarctobacterium-0.1419.81e-104.58e-09
speciesPhascolarctobacterium_succinatutens-0.1419.81e-104.58e-09
familyPropionibacteriaceae0.141.33e-096.15e-09
familyBacteroidales_noname-0.141.37e-096.16e-09
genusBacteroidales_noname-0.141.37e-096.16e-09
speciesBacteroidales_bacterium_ph8-0.141.37e-096.16e-09
orderBifidobacteriales0.1372.46e-091.09e-08
familyBifidobacteriaceae0.1372.46e-091.09e-08
genusBarnesiella-0.1373.06e-091.32e-08
speciesBarnesiella_intestinihominis-0.1373.06e-091.32e-08
speciesEnterococcus_faecium0.1373.08e-091.32e-08
speciesStreptococcus_thermophilus0.1354.18e-091.78e-08
speciesSutterella_wadsworthensis-0.1354.8e-092.02e-08
genusDesulfovibrio-0.1354.88e-092.04e-08
genusBifidobacterium0.1355.11e-092.12e-08
speciesParaprevotella_clara-0.1345.81e-092.37e-08
genusSutterella-0.1345.83e-092.37e-08
speciesStreptococcus_anginosus0.1336.86e-092.77e-08
genusDialister0.1337.02e-092.81e-08
speciesLachnospiraceae_bacterium_1_1_57FAA0.1338.54e-093.39e-08
familyEnterococcaceae0.1321.01e-083.97e-08
genusEnterococcus0.1311.25e-084.88e-08
speciesPropionibacterium_freudenreichii0.1311.27e-084.91e-08
speciesButyrivibrio_crossotus-0.1311.29e-084.95e-08
speciesStreptococcus_gordonii0.1311.38e-085.25e-08
genusRothia0.131.59e-086e-08
familyMicrococcaceae0.131.71e-086.41e-08
speciesLactobacillus_rhamnosus0.1292.14e-087.95e-08
genusSutterellaceae_unclassified-0.1264.76e-081.76e-07
speciesRothia_mucilaginosa0.1248.1e-082.96e-07
genusMitsuokella-0.1248.29e-083.01e-07
speciesHoldemania_sp_AP20.1239.43e-083.4e-07
speciesClostridium_spiroforme0.1239.8e-083.5e-07
genusPrevotella-0.1231.01e-073.58e-07
speciesPrevotella_copri-0.1231.05e-073.7e-07
speciesStreptococcus_vestibularis0.1221.24e-074.34e-07
speciesStreptococcus_mutans0.1211.49e-075.17e-07
speciesMitsuokella_unclassified-0.1211.7e-075.86e-07
speciesMethanobrevibacter_smithii-0.1192.48e-078.48e-07
speciesAlistipes_putredinis-0.1192.58e-078.76e-07
phylumBacteroidetes-0.1182.91e-079.74e-07
classBacteroidia-0.1182.93e-079.74e-07
orderBacteroidales-0.1182.93e-079.74e-07
speciesClostridium_bartlettii0.1183.06e-071.01e-06
genusButyricimonas-0.1183.15e-071.03e-06
speciesButyricimonas_synergistica-0.1183.15e-071.03e-06
speciesPeptostreptococcus_stomatis0.1174.01e-071.3e-06
genusCatenibacterium-0.1174.13e-071.32e-06
speciesCatenibacterium_mitsuokai-0.1174.13e-071.32e-06
genusMethanobrevibacter-0.1165.46e-071.73e-06
genusClostridiaceae_noname0.1155.65e-071.77e-06
speciesClostridiaceae_bacterium_JC1180.1155.65e-071.77e-06
speciesAnaerostipes_hadrus0.1156.66e-072.07e-06
speciesBacteroides_faecis-0.1147.07e-072.18e-06
speciesBacteroides_cellulosilyticus-0.1147.66e-072.35e-06
classMethanobacteria-0.1148.2e-072.47e-06
orderMethanobacteriales-0.1148.2e-072.47e-06
familyMethanobacteriaceae-0.1148.2e-072.47e-06
speciesGemella_morbillorum0.1148.5e-072.54e-06
phylumEuryarchaeota-0.1148.57e-072.54e-06
speciesAnaerotruncus_unclassified-0.1131.04e-063.07e-06
speciesLachnospiraceae_bacterium_2_1_58FAA0.1131.07e-063.14e-06
speciesBacteroides_eggerthii-0.1111.39e-064.05e-06
genusFaecalibacterium-0.1092.51e-067.22e-06
speciesFaecalibacterium_prausnitzii-0.1092.51e-067.22e-06
familyLeuconostocaceae0.1082.58e-067.38e-06
familyPorphyromonadaceae-0.1082.86e-068.13e-06
speciesRoseburia_hominis-0.1082.93e-068.28e-06
speciesLactococcus_lactis0.1073.48e-069.78e-06
familyLactobacillaceae0.1073.6e-061.01e-05
speciesClostridium_sp_L2_50-0.1073.78e-061.05e-05
speciesLactobacillus_gasseri0.1064.28e-061.18e-05
speciesStreptococcus_salivarius0.1055.71e-061.57e-05
speciesEubacterium_hallii0.1038.44e-062.3e-05
speciesPeptostreptococcus_anaerobius0.1029.81e-062.66e-05
speciesStreptococcus_australis0.1011.1e-052.97e-05
genusLactobacillus0.11.36e-053.65e-05
genusLactococcus0.11.38e-053.68e-05
speciesStreptococcus_parasanguinis0.11.45e-053.84e-05
genusPeptoniphilus0.11.5e-053.96e-05
speciesAlistipes_finegoldii-0.11.56e-054.09e-05
speciesLactobacillus_plantarum0.0991.63e-054.25e-05
speciesRuminococcus_obeum0.0991.88e-054.88e-05
orderPseudomonadales0.0982.19e-055.65e-05
speciesDialister_succinatiphilus-0.0972.41e-056.18e-05
genusAdlercreutzia0.0972.48e-056.29e-05
speciesAdlercreutzia_equolifaciens0.0972.48e-056.29e-05
speciesLactobacillus_ruminis-0.0972.56e-056.46e-05
speciesCoriobacteriaceae_bacterium_phI0.0972.62e-056.58e-05
speciesPrevotella_stercorea-0.0972.83e-057.07e-05
speciesLactobacillus_sanfranciscensis0.0963.05e-057.58e-05
speciesBifidobacterium_animalis0.0954.19e-050.000104
genusCoriobacteriaceae_noname0.0944.82e-050.000118
speciesBacteroides_pectinophilus-0.0944.85e-050.000119
speciesBacteroides_plebeius-0.0945.08e-050.000124
speciesLactobacillus_casei_paracasei0.0935.3e-050.000128
speciesEubacterium_dolichum0.0935.37e-050.000129
speciesLactobacillus_delbrueckii0.0935.56e-050.000133
genusLeuconostoc0.0926.46e-050.000154
speciesDorea_formicigenerans0.0927.1e-050.000168
speciesCoprococcus_eutactus-0.0918.69e-050.000205
speciesBacteroides_caccae-0.099.12e-050.000214
speciesPorphyromonas_uenonis0.099.45e-050.000221
speciesSubdoligranulum_unclassified-0.090.0001050.000244
familyPeptostreptococcaceae0.0880.0001360.000315
genusEscherichia0.0870.0001740.000401
speciesCollinsella_aerofaciens-0.0860.0001810.000415
speciesClostridium_sp_ATCC_BAA_4420.0860.0001870.000426
genusCoprococcus-0.0850.0002380.000537
speciesRuminococcus_callidus-0.0850.0002380.000537
speciesBacteroides_finegoldii-0.0840.0002670.0006
genusSubdoligranulum-0.0840.0002780.000622
familyRikenellaceae-0.0830.0003130.000694
genusAlistipes-0.0830.0003130.000694
genusParabacteroides-0.0830.0003290.000726
speciesRuminococcus_champanellensis-0.0830.0003480.000764
genusDorea0.0820.0003590.000784
speciesEubacterium_limosum0.0820.0003750.000816
speciesPrevotella_bivia0.0820.0003910.000847
genusHaemophilus-0.0820.0004130.00089
speciesBacteroides_coprophilus-0.0810.000440.00094
speciesParabacteroides_goldsteinii-0.0810.0004430.00094
speciesEscherichia_coli0.0810.0004430.00094
speciesMitsuokella_multacida-0.0810.0004440.00094
speciesRoseburia_inulinivorans-0.0810.0004910.00103
speciesHaemophilus_parainfluenzae-0.080.0005320.00112
orderPasteurellales-0.080.0005390.00112
familyPasteurellaceae-0.080.0005390.00112
speciesOlsenella_unclassified-0.080.0005520.00114
speciesBacteroides_fragilis0.080.0005570.00115
speciesKlebsiella_oxytoca0.0790.0006040.00124
speciesLachnospiraceae_bacterium_2_1_46FAA0.0790.0006110.00125
orderEnterobacteriales0.0790.0006290.00127
familyEnterobacteriaceae0.0790.0006290.00127
speciesBifidobacterium_dentium0.0790.0006730.00136
familyLachnospiraceae0.0780.0006810.00137
speciesBacteroides_coprocola-0.0780.000740.00148
speciesBacteroides_dorei-0.0780.0007540.0015
speciesEscherichia_unclassified0.0760.0009390.00186
speciesEubacterium_cylindroides-0.0760.0009590.00189
speciesHoldemania_filiformis0.0750.001120.0022
speciesFusobacterium_ulcerans0.0750.001220.00239
speciesMegasphaera_unclassified-0.0750.001260.00246
speciesClostridium_leptum0.0740.001420.00276
genusPeptostreptococcaceae_noname0.0730.001550.003
speciesBacteroides_intestinalis-0.0730.001630.00314
familyStaphylococcaceae0.0720.001840.00353
speciesDesulfovibrio_desulfuricans-0.0710.002110.00403
speciesBacteroides_massiliensis-0.070.002370.00451
speciesRuminococcus_sp_JC3040.070.002530.0048
genusMorganella0.070.002610.00491
speciesMorganella_morganii0.070.002610.00491
speciesMethanobrevibacter_unclassified-0.0690.002670.005
genusParasutterella-0.0690.002810.00522
speciesParasutterella_excrementihominis-0.0690.002810.00522
speciesBifidobacterium_pseudocatenulatum0.0690.002820.00522
speciesCollinsella_unclassified0.0690.002930.0054
speciesBacteroides_clarus-0.0690.002980.00547
speciesAcidaminococcus_intestini-0.0680.003150.00576
speciesWeissella_cibaria0.0680.003160.00576
speciesEubacterium_rectale-0.0680.003270.00594
speciesCoprobacillus_sp_D60.0680.003330.00602
speciesFusobacterium_nucleatum0.0680.003450.00622
speciesStreptococcus_phage_Sfi210.0660.004180.0075
genusButyricicoccus0.0660.004240.00755
speciesButyricicoccus_pullicaecorum0.0660.004240.00755
genusEubacterium-0.0660.004510.008
classErysipelotrichia0.0660.004580.00804
orderErysipelotrichales0.0660.004580.00804
familyErysipelotrichaceae0.0660.004580.00804
familyEubacteriaceae-0.0650.004840.00846
genusWeissella0.0650.004930.00859
speciesEnterococcus_faecalis0.0640.005310.00921
speciesBacteroides_vulgatus-0.0640.00550.00951
genusStaphylococcus0.0640.00580.00999
speciesBacteroides_salyersiae-0.0630.006290.0108
speciesRuminococcus_lactaris-0.0620.007310.0125
speciesCoprococcus_catus-0.0620.007330.0125
genusMegasphaera-0.0610.008610.0146
speciesLactobacillus_fermentum0.0610.008710.0147
speciesWeissella_confusa0.060.009860.0166
speciesParabacteroides_distasonis-0.0590.01060.0178
speciesCoprobacillus_sp_29_10.0590.01130.0189
genusRoseburia-0.0580.01170.0195
speciesLactobacillus_vaginalis0.0580.01210.0201
speciesAlistipes_unclassified0.0560.0150.0248
speciesPorphyromonas_asaccharolytica0.0560.01550.0256
speciesRuminococcus_bromii0.0560.01560.0257
orderAeromonadales-0.0560.01610.0264
speciesBifidobacterium_bifidum0.0540.01840.0301
speciesBacteroides_nordii-0.0540.020.0326
speciesAlistipes_onderdonkii-0.0530.02130.0345
speciesLactobacillus_oris0.0520.02360.0381
speciesHoldemania_unclassified0.0510.0270.0435
classGammaproteobacteria0.0510.02720.0437
speciesBacteroides_salanitronis-0.0510.02730.0437
genusPorphyromonas0.0510.02860.0455
genusCollinsella-0.0510.02860.0455
familySuccinivibrionaceae-0.050.02980.0472
speciesCitrobacter_freundii0.050.03010.0475
speciesMegasphaera_elsdenii-0.050.03190.0502
speciesParabacteroides_sp_D13-0.0490.03230.0506
familyFusobacteriaceae0.0490.03240.0506
genusFusobacterium0.0490.03250.0506
speciesBacteroides_uniformis-0.0490.03290.0511
speciesAcidaminococcus_fermentans-0.0490.03320.0514
speciesParabacteroides_johnsonii-0.0480.03680.0565
genusSuccinatimonas-0.0480.03690.0565
speciesSuccinatimonas_hippei-0.0480.03690.0565
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0480.03760.0574
phylumFusobacteria0.0480.03820.0578
classFusobacteriia0.0480.03820.0578
orderFusobacteriales0.0480.03820.0578
genusTunalikevirus-0.0470.04190.0632
speciesLactobacillus_reuteri0.0460.04720.071
genusOlsenella-0.0460.04740.071
genusCitrobacter0.0460.04870.0727
speciesBifidobacterium_angulatum-0.0460.04880.0727
speciesCollinsella_tanakaei-0.0450.05250.0779
speciesKlebsiella_phage_KP36-0.0440.05510.0815
speciesBacteroides_xylanisolvens-0.0440.05640.0832
genusPyramidobacter0.0440.0570.0836
speciesPyramidobacter_piscolens0.0440.0570.0836
speciesOscillibacter_sp_KLE_17280.0440.05810.0849
genusPseudoflavonifractor-0.0440.05960.0866
speciesPseudoflavonifractor_capillosus-0.0440.05960.0866
speciesCitrobacter_unclassified0.0430.06080.088
speciesLactobacillus_salivarius0.0430.06190.0893
speciesBifidobacterium_adolescentis-0.0430.06350.0914
genusMethanosphaera-0.0420.06710.096
speciesMethanosphaera_stadtmanae-0.0420.06710.096
speciesFusobacterium_mortiferum-0.0420.06860.0978
speciesBacteroides_sp_4_3_47FAA-0.0420.07090.101
speciesBacteroides_stercoris-0.0420.07220.102
speciesButyrivibrio_unclassified-0.0420.07260.103
speciesCollinsella_intestinalis0.0410.07750.109
classNegativicutes-0.040.08170.114
orderSelenomonadales-0.040.08170.114
speciesSlackia_piriformis-0.040.08180.114
speciesBifidobacterium_breve0.040.08440.118
speciesLactococcus_phage_936_sensu_lato-0.0390.09440.131
familyMyoviridae-0.0380.09680.134
speciesParabacteroides_sp_20_3-0.0380.09760.135
speciesCampylobacter_concisus-0.0380.09850.136
classClostridia0.0380.1040.142
orderClostridiales0.0380.1040.142
speciesMegasphaera_micronuciformis0.0370.1060.145
phylumFirmicutes0.0370.1080.147
speciesDorea_unclassified0.0370.1120.151
speciesCoprococcus_comes-0.0370.1120.151
phylumSynergistetes0.0370.1130.151
classSynergistia0.0370.1130.151
orderSynergistales0.0370.1130.151
familySynergistaceae0.0370.1130.151
speciesLactobacillus_crispatus0.0370.1140.152
speciesEubacterium_ventriosum-0.0360.1160.154
speciesBacteroides_ovatus0.0360.1170.155
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0360.1180.156
genusAcidaminococcus-0.0350.1270.167
speciesBacteroides_sp_2_1_22-0.0350.1320.174
speciesLactococcus_phage_bIL670.0340.1380.181
speciesLactococcus_garvieae0.0340.140.183
speciesMegamonas_funiformis-0.0330.1530.199
speciesLeuconostoc_lactis0.0320.170.221
speciesPeptostreptococcaceae_noname_unclassified-0.0320.1710.222
speciesLactococcus_phage_phi7-0.0310.1790.231
familyPodoviridae0.0310.1810.233
familyBurkholderiales_noname-0.0310.1820.234
speciesOscillibacter_unclassified0.0310.1860.239
speciesHaemophilus_paraphrohaemolyticus-0.030.1880.24
classDeltaproteobacteria-0.030.190.241
orderDesulfovibrionales-0.030.190.241
familyDesulfovibrionaceae-0.030.190.241
genusBurkholderiales_noname-0.030.1910.241
speciesBurkholderiales_bacterium_1_1_47-0.030.1910.241
genusAcidaminococcaceae_unclassified-0.030.1940.244
speciesMegamonas_rupellensis-0.0290.2040.256
speciesBacteroides_sp_3_1_190.0290.2140.268
speciesKlebsiella_unclassified0.0280.2270.283
speciesLactobacillus_amylovorus0.0250.280.348
speciesRoseburia_intestinalis-0.0250.280.348
speciesLactobacillus_acidophilus0.0250.2860.353
speciesVeillonella_parvula0.0250.2860.353
speciesMegamonas_hypermegale-0.0250.2880.355
familyViruses_noname-0.0240.2920.358
genusViruses_noname-0.0240.2920.358
speciesLactobacillus_mucosae-0.0230.3110.38
genusPantoea0.0230.3160.383
speciesPantoea_unclassified0.0230.3160.383
speciesOscillibacter_sp_KLE_17450.0230.3160.383
genusErysipelotrichaceae_noname0.0230.3290.398
familyVeillonellaceae0.0220.3480.42
familyOscillospiraceae0.0220.3510.422
genusOscillibacter0.0220.3510.422
familyRuminococcaceae0.020.3770.452
speciesLachnospiraceae_bacterium_7_1_58FAA-0.020.390.466
speciesAlistipes_sp_HGB5-0.020.3980.474
speciesAlistipes_sp_AP110.0190.4070.484
genusLambdalikevirus-0.0180.4340.515
speciesEnterobacter_aerogenes-0.0180.4410.522
speciesParabacteroides_unclassified0.0180.4460.526
genusKlebsiella0.0170.4540.534
speciesBifidobacterium_catenulatum0.0170.4570.536
speciesTuricibacter_sanguinis0.0170.4590.536
genusActinobacillus-0.0170.460.536
speciesActinobacillus_unclassified-0.0170.460.536
speciesOdoribacter_laneus0.0160.480.558
speciesEubacterium_ramulus-0.0160.4970.576
speciesFusobacterium_varium0.0150.5110.591
speciesOdoribacter_unclassified-0.0150.5130.592
genusAnaerotruncus-0.0150.5180.596
speciesVeillonella_unclassified-0.0150.5290.607
speciesKlebsiella_sp_MS_92_30.0150.530.607
speciesStreptococcus_lutetiensis0.0140.5540.633
speciesProteus_mirabilis-0.0140.5570.635
speciesBacteroides_fluxus0.0130.560.637
genusC2likevirus0.0130.5650.641
speciesSutterella_parvirubra-0.0120.60.679
phylumProteobacteria-0.0110.6280.709
speciesTuricibacter_unclassified0.0110.6410.722
speciesBacteroides_sp_1_1_6-0.0110.6460.726
genusMyoviridae_noname-0.010.6510.728
speciesC2likevirus_unclassified0.010.6510.728
speciesClostridium_perfringens-0.010.660.736
classEpsilonproteobacteria-0.010.6680.742
orderCampylobacterales-0.010.6680.742
speciesMegamonas_unclassified-0.010.6750.748
genusProteus-0.0090.6820.754
speciesPrevotella_buccae-0.0090.6850.755
speciesHaemophilus_sputorum0.0090.6890.757
orderCaudovirales-0.0090.690.757
genusMegamonas-0.0090.70.766
genusSiphoviridae_noname0.0090.7010.766
speciesAcidaminococcus_unclassified0.0090.7090.773
genusSlackia-0.0090.7130.775
speciesStreptococcus_pasteurianus0.0080.7260.788
genusRuminococcaceae_noname-0.0080.7420.801
speciesRuminococcaceae_bacterium_D16-0.0080.7420.801
speciesStreptococcus_infantarius0.0070.7460.804
speciesEnterobacteria_phage_HK544-0.0070.7550.812
speciesVeillonella_atypica-0.0070.7580.813
familyBacteroidaceae-0.0070.7620.814
genusBacteroides-0.0070.7620.814
familyCampylobacteraceae-0.0060.7850.836
speciesBacteroides_barnesiae-0.0060.7860.836
genusEnterobacter-0.0060.7920.838
speciesBilophila_wadsworthia0.0060.7920.838
familySiphoviridae-0.0060.7950.838
speciesBacteroides_oleiciplenus0.0060.7950.838
speciesAggregatibacter_segnis0.0060.8030.844
speciesLactococcus_phage_P680-0.0060.8050.844
speciesRoseburia_unclassified-0.0050.8410.88
speciesBilophila_unclassified0.0040.8480.886
speciesDorea_longicatena-0.0040.8540.89
orderViruses_noname-0.0040.870.901
genusCampylobacter-0.0040.8730.901
phylumViruses_noname-0.0040.8780.901
classViruses_noname-0.0040.8780.901
speciesKlebsiella_pneumoniae-0.0030.880.901
genusTuricibacter0.0030.8830.901
phylumVerrucomicrobia0.0030.8880.901
classVerrucomicrobiae0.0030.8880.901
orderVerrucomicrobiales0.0030.8880.901
familyVerrucomicrobiaceae0.0030.8880.901
genusAkkermansia0.0030.8880.901
speciesAkkermansia_muciniphila0.0030.8880.901
genusBilophila0.0030.8950.907
speciesEnterobacter_cloacae-0.0020.9140.924
speciesBacteroides_thetaiotaomicron0.0020.9260.934
genusAggregatibacter-0.0020.9340.94
speciesVeillonella_dispar0.0010.9520.956
genusVeillonella-0.0010.9660.968
speciesLactococcus_phage_jm20.0010.980.98
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.0002124985316559.24410689935e-050.0115422862731835127.7672
Type II diabetesSweden53920.0005544323344170.0002025031300580.03005949878511874.01964
ObesityDenmark1691234.32203949941e-052.28259197386e-050.0366997117657424013.9423
Ulcerative colitisSpain78660.000151287878379.24410689935e-050.0623504430347536017.6816
Liver cirrhosisChina1201140.0001435958138149.29980960616e-050.1378356543751768459.4041
Type II diabetesDenmark752772.25130402593e-053.4978475404e-050.2260963277181373945.0356
Type II diabetesChina1831850.0002168869871879.21807962124e-050.2859872461021576552.1002
Colorectal cancerAustria64350.0008280664813720.003105416881610.396331610751491950.4771
Rheumatoid arthritisChina127980.0003727246647640.0005614886311190.4401020973721590653.043
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382