MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-05-20 10:57:10 PST
Job id & description: 1847, test
Query type: dna
Count queries & homologs: 1, 5
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
test1886983unknownunknownActinobacteriaBifidobacterium99.172.4698.03
test1882600unknownunknownActinobacteriaBifidobacterium99.171.9693.55
test1864726unknownunknownActinobacteriaBifidobacterium99.172.3290.96
test11081828unknownunknownActinobacteriaActinomyces94.1675.783.81
test11317042unknownunknownFirmicutesBlautia89.4975.2177.42
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumActinobacteria0.8440.00.0
classActinobacteria0.8440.00.0
orderBifidobacteriales0.7610.00.0
familyBifidobacteriaceae0.7610.00.0
genusBifidobacterium0.7590.00.0
orderCoriobacteriales0.6815.74e-2553.87e-253
familyCoriobacteriaceae0.6815.74e-2553.87e-253
phylumBacteroidetes-0.651.46e-2247.32e-223
classBacteroidia-0.651.55e-2247.32e-223
orderBacteroidales-0.651.55e-2247.32e-223
speciesBifidobacterium_longum0.6285.14e-2062.21e-204
speciesRuminococcus_obeum0.6222.14e-2008.42e-199
speciesEubacterium_hallii0.5764.3e-1661.56e-164
speciesRuminococcus_sp_5_1_39BFAA0.5693.44e-1611.16e-159
genusDorea0.5566.72e-1522.11e-150
speciesLachnospiraceae_bacterium_5_1_63FAA0.5311.1e-1363.24e-135
genusAnaerostipes0.5292.09e-1355.8e-134
genusBlautia0.5225.46e-1311.43e-129
phylumFirmicutes0.5149.95e-1272.47e-125
speciesAnaerostipes_hadrus0.5082.21e-1235.22e-122
genusRuminococcus0.5051.17e-1212.63e-120
speciesDorea_formicigenerans0.4856.58e-1111.41e-109
classClostridia0.4821.85e-1093.64e-108
orderClostridiales0.4821.85e-1093.64e-108
orderLactobacillales0.4721.96e-1043.7e-103
classBacilli0.4722.5e-1044.54e-103
speciesDorea_longicatena0.4422.85e-904.98e-89
familyStreptococcaceae0.4393.77e-896.36e-88
genusCollinsella0.4382.09e-883.4e-87
genusStreptococcus0.4375.44e-888.56e-87
familyLachnospiraceae0.4329.73e-861.48e-84
familyActinomycetaceae0.4291.66e-842.45e-83
genusActinomyces0.4271.31e-831.87e-82
familyRuminococcaceae0.4221.23e-811.71e-80
speciesCollinsella_aerofaciens0.4143.16e-784.26e-77
speciesRuminococcus_torques0.4092.42e-763.17e-75
familyBacteroidaceae-0.4087.11e-768.83e-75
genusBacteroides-0.4087.11e-768.83e-75
speciesBifidobacterium_adolescentis0.4063.53e-754.27e-74
speciesCoprococcus_comes0.397.96e-699.39e-68
speciesEggerthella_lenta0.3891.76e-682.03e-67
genusAdlercreutzia0.3825.64e-666.19e-65
speciesAdlercreutzia_equolifaciens0.3825.64e-666.19e-65
genusEggerthella0.3744.09e-634.39e-62
orderActinomycetales0.3737.74e-638.12e-62
speciesStreptococcus_salivarius0.3691.74e-611.79e-60
genusGordonibacter0.3671.09e-601.07e-59
speciesGordonibacter_pamelaeae0.3671.09e-601.07e-59
speciesStreptococcus_thermophilus0.3641.63e-591.57e-58
genusLachnospiraceae_noname0.3631.83e-591.73e-58
speciesEggerthella_unclassified0.3512.28e-552.11e-54
speciesCoprococcus_catus0.3512.6e-552.36e-54
genusCoprococcus0.3461.04e-539.26e-53
speciesStreptococcus_sanguinis0.3444.43e-533.87e-52
familyLactobacillaceae0.3361.19e-501.02e-49
genusParabacteroides-0.3361.39e-501.17e-49
genusLactobacillus0.3277.21e-485.97e-47
familyPorphyromonadaceae-0.3182.5e-452.03e-44
genusSolobacterium0.3182.59e-452.04e-44
speciesSolobacterium_moorei0.3182.59e-452.04e-44
speciesEubacterium_ramulus0.3176.75e-455.22e-44
familyBacillales_noname0.3113.14e-432.35e-42
genusGemella0.3113.14e-432.35e-42
orderBacillales0.3091.42e-421.05e-41
speciesStreptococcus_parasanguinis0.3061.01e-417.33e-41
speciesBifidobacterium_catenulatum0.2932.92e-382.09e-37
familyPeptostreptococcaceae0.291.57e-371.11e-36
genusOdoribacter-0.2861.38e-369.58e-36
speciesOdoribacter_splanchnicus-0.2853.45e-362.36e-35
genusPeptostreptococcaceae_noname0.2781.48e-349.98e-34
speciesBifidobacterium_bifidum0.2751.08e-337.18e-33
speciesBacteroides_xylanisolvens-0.2724.43e-332.9e-32
speciesErysipelotrichaceae_bacterium_21_30.2684.41e-322.76e-31
classErysipelotrichia0.2684.45e-322.76e-31
orderErysipelotrichales0.2684.45e-322.76e-31
familyErysipelotrichaceae0.2684.45e-322.76e-31
speciesBacteroides_thetaiotaomicron-0.2677.42e-324.55e-31
speciesErysipelotrichaceae_bacterium_2_2_44A0.2678.89e-325.38e-31
classBetaproteobacteria-0.2652.34e-311.4e-30
orderBurkholderiales-0.2611.31e-307.73e-30
speciesBlautia_hydrogenotrophica0.2611.35e-307.87e-30
speciesRuminococcus_bromii0.2594.23e-302.43e-29
genusEnterococcus0.2587.88e-304.48e-29
familyEnterococcaceae0.2588.35e-304.69e-29
speciesClostridium_bartlettii0.2571.11e-296.16e-29
familySutterellaceae-0.2571.73e-299.49e-29
speciesClostridium_leptum0.2512.89e-281.57e-27
genusPrevotella-0.2454.76e-272.55e-26
genusOlsenella0.2422.56e-261.36e-25
speciesBifidobacterium_animalis0.246.94e-263.64e-25
speciesBifidobacterium_dentium0.2391.09e-255.65e-25
familyMicrococcaceae0.2381.73e-258.88e-25
genusRothia0.2381.75e-258.88e-25
speciesStreptococcus_vestibularis0.2373.19e-251.6e-24
speciesStreptococcus_australis0.2365.53e-252.75e-24
speciesLactobacillus_delbrueckii0.2358.26e-254.06e-24
speciesErysipelotrichaceae_bacterium_6_1_450.2341.18e-245.74e-24
speciesRothia_mucilaginosa0.2331.73e-248.33e-24
speciesStreptococcus_mutans0.2332.24e-241.07e-23
speciesPrevotella_copri-0.2313.81e-241.8e-23
familyPrevotellaceae-0.2314.18e-241.95e-23
familyEubacteriaceae0.2315.02e-242.32e-23
genusEubacterium0.236.5e-242.98e-23
familyClostridiales_Family_XI_Incertae_Sedis0.236.85e-243.11e-23
speciesBacteroides_vulgatus-0.2272.78e-231.25e-22
speciesBifidobacterium_pseudocatenulatum0.2272.98e-231.33e-22
familyRikenellaceae-0.2264.65e-232.03e-22
genusAlistipes-0.2264.65e-232.03e-22
speciesLactobacillus_casei_paracasei0.2241.22e-225.28e-22
speciesStreptococcus_gordonii0.2231.47e-226.31e-22
speciesBlautia_producta0.227.67e-223.26e-21
speciesAlistipes_shahii-0.2191.12e-214.72e-21
genusErysipelotrichaceae_noname0.2191.13e-214.72e-21
speciesEnterococcus_faecium0.2181.54e-216.38e-21
genusPeptostreptococcus0.2163.46e-211.42e-20
speciesLactobacillus_rhamnosus0.2156.03e-212.45e-20
speciesOlsenella_unclassified0.2131.17e-204.72e-20
genusCoprobacillus0.2112.37e-209.48e-20
speciesBacteroides_ovatus-0.213.9e-201.55e-19
genusLeuconostoc0.215.39e-202.12e-19
genusLactococcus0.2089.85e-203.84e-19
speciesLactococcus_lactis0.2062.69e-191.04e-18
speciesPropionibacterium_freudenreichii0.2053.72e-191.43e-18
speciesStreptococcus_anginosus0.2038.6e-193.27e-18
familyLeuconostocaceae0.2011.92e-187.25e-18
speciesLachnospiraceae_bacterium_1_4_56FAA0.1984.63e-181.73e-17
speciesParabacteroides_merdae-0.1986.36e-182.36e-17
genusSubdoligranulum0.1952.03e-177.49e-17
genusPropionibacterium0.1933.54e-171.3e-16
speciesCoprobacillus_unclassified0.1933.98e-171.45e-16
speciesPrevotella_stercorea-0.1934.19e-171.51e-16
speciesBacteroides_stercoris-0.1919.57e-173.42e-16
speciesSubdoligranulum_unclassified0.191.06e-163.76e-16
speciesStreptococcus_mitis_oralis_pneumoniae0.1882.22e-167.82e-16
genusParvimonas0.1864.32e-161.51e-15
speciesParvimonas_unclassified0.1864.42e-161.53e-15
speciesClostridium_ramosum0.1849.19e-163.17e-15
speciesAlistipes_putredinis-0.184.96e-151.7e-14
speciesLactobacillus_gasseri0.1795.51e-151.87e-14
genusButyricimonas-0.1771.45e-144.85e-14
speciesButyricimonas_synergistica-0.1771.45e-144.85e-14
speciesDialister_invisus0.1752.45e-148.14e-14
speciesLachnospiraceae_bacterium_5_1_57FAA0.1735.39e-141.78e-13
speciesLactobacillus_plantarum0.1726.7e-142.2e-13
speciesGemella_morbillorum0.171.15e-133.74e-13
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1691.92e-136.21e-13
genusDialister0.1673.49e-131.12e-12
speciesHaemophilus_parainfluenzae-0.1657.81e-132.49e-12
genusHaemophilus-0.1649.34e-132.96e-12
orderPasteurellales-0.1621.58e-124.94e-12
familyPasteurellaceae-0.1621.58e-124.94e-12
speciesEubacterium_limosum0.1621.95e-126.06e-12
speciesEubacterium_rectale0.163.04e-129.38e-12
speciesFusobacterium_mortiferum-0.1561.12e-113.43e-11
genusParasutterella-0.1551.51e-114.57e-11
speciesParasutterella_excrementihominis-0.1551.51e-114.57e-11
speciesRuminococcus_sp_JC3040.1523.47e-111.04e-10
speciesBifidobacterium_breve0.1523.88e-111.16e-10
speciesAlistipes_finegoldii-0.1514.58e-111.36e-10
genusHoldemania0.1471.53e-104.51e-10
speciesBacteroides_caccae-0.1471.56e-104.57e-10
speciesBacteroides_nordii-0.1453.23e-109.41e-10
speciesLachnospiraceae_bacterium_2_1_58FAA0.1443.57e-101.03e-09
speciesBacteroides_intestinalis-0.1444.54e-101.31e-09
speciesBacteroides_plebeius-0.1435.15e-101.47e-09
speciesEnterococcus_faecalis0.1435.63e-101.6e-09
speciesEggerthella_sp_1_3_56FAA0.1426.56e-101.85e-09
speciesBacteroides_massiliensis-0.1418.5e-102.39e-09
speciesEubacterium_ventriosum0.141.11e-093.1e-09
speciesBacteroides_uniformis-0.1382.01e-095.58e-09
familyPropionibacteriaceae0.1372.49e-096.87e-09
speciesBacteroides_finegoldii-0.1363.13e-098.59e-09
speciesParabacteroides_goldsteinii-0.1363.47e-099.47e-09
genusSiphoviridae_noname0.1363.83e-091.04e-08
speciesParabacteroides_distasonis-0.1345.67e-091.53e-08
speciesLactobacillus_acidophilus0.1338.39e-092.25e-08
speciesPeptostreptococcus_anaerobius0.1338.62e-092.3e-08
speciesSubdoligranulum_sp_4_3_54A2FAA0.1329.14e-092.42e-08
speciesPeptostreptococcaceae_noname_unclassified0.1329.19e-092.42e-08
genusSutterellaceae_unclassified-0.1311.41e-083.7e-08
speciesPeptostreptococcus_stomatis0.1283.03e-087.9e-08
speciesBacteroides_cellulosilyticus-0.1273.85e-089.98e-08
speciesErysipelotrichaceae_bacterium_3_1_530.1264.97e-081.28e-07
speciesEubacterium_cylindroides0.1256.05e-081.55e-07
orderPseudomonadales0.1256.25e-081.59e-07
speciesTuricibacter_sanguinis0.1238.99e-082.28e-07
speciesBacteroides_faecis-0.1231.02e-072.57e-07
genusPeptoniphilus0.1231.06e-072.66e-07
speciesLactobacillus_amylovorus0.1221.09e-072.72e-07
phylumViruses_noname0.1221.16e-072.87e-07
classViruses_noname0.1221.16e-072.87e-07
phylumProteobacteria-0.1221.35e-073.32e-07
phylumVerrucomicrobia0.1211.49e-073.55e-07
classVerrucomicrobiae0.1211.49e-073.55e-07
orderVerrucomicrobiales0.1211.49e-073.55e-07
familyVerrucomicrobiaceae0.1211.49e-073.55e-07
genusAkkermansia0.1211.49e-073.55e-07
speciesAkkermansia_muciniphila0.1211.49e-073.55e-07
speciesLachnospiraceae_bacterium_1_1_57FAA0.122.02e-074.79e-07
speciesKlebsiella_pneumoniae-0.1182.82e-076.66e-07
speciesLactobacillus_fermentum0.1183.31e-077.77e-07
genusTuricibacter0.1174.07e-079.51e-07
genusCoriobacteriaceae_noname0.1164.68e-071.09e-06
speciesCoriobacteriaceae_bacterium_phI0.1165.29e-071.22e-06
speciesRuminococcus_gnavus0.1156.16e-071.42e-06
familyBurkholderiales_noname-0.1147.69e-071.76e-06
genusBurkholderiales_noname-0.1139.39e-072.13e-06
speciesBurkholderiales_bacterium_1_1_47-0.1139.39e-072.13e-06
speciesEubacterium_eligens-0.1111.49e-063.36e-06
speciesLactococcus_phage_P6800.1111.5e-063.37e-06
genusFaecalibacterium0.111.75e-063.9e-06
speciesFaecalibacterium_prausnitzii0.111.75e-063.9e-06
familySiphoviridae0.1082.62e-065.81e-06
phylumFusobacteria-0.1083.1e-066.77e-06
classFusobacteriia-0.1083.1e-066.77e-06
orderFusobacteriales-0.1083.1e-066.77e-06
speciesHoldemania_filiformis0.1073.89e-068.46e-06
speciesOscillibacter_sp_KLE_1728-0.1063.98e-068.62e-06
speciesBacteroides_salyersiae-0.1064.53e-069.76e-06
speciesTuricibacter_unclassified0.1055.09e-061.09e-05
genusClostridium0.1055.73e-061.22e-05
classDeltaproteobacteria-0.1045.95e-061.25e-05
orderDesulfovibrionales-0.1045.95e-061.25e-05
familyDesulfovibrionaceae-0.1045.95e-061.25e-05
speciesClostridium_clostridioforme0.1045.99e-061.26e-05
speciesPrevotella_buccae-0.1046.7e-061.4e-05
familyFusobacteriaceae-0.1046.89e-061.43e-05
speciesDorea_unclassified-0.1037.31e-061.51e-05
familyClostridiaceae0.1037.39e-061.52e-05
speciesMegamonas_funiformis-0.1038.47e-061.74e-05
orderCaudovirales0.1029.3e-061.9e-05
speciesBacteroides_oleiciplenus-0.1029.91e-062.01e-05
genusStaphylococcus0.1029.94e-062.01e-05
genusFusobacterium-0.1011.12e-052.26e-05
familyStaphylococcaceae0.1011.15e-052.31e-05
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.11.5e-053e-05
speciesParaprevotella_xylaniphila-0.0991.84e-053.66e-05
speciesMegamonas_unclassified-0.0963.46e-056.86e-05
genusMegamonas-0.0953.87e-057.64e-05
speciesBacteroides_dorei-0.0926.49e-050.000128
speciesAnaerotruncus_colihominis0.0926.65e-050.00013
speciesCoprobacillus_sp_D60.0917.9e-050.000154
speciesFusobacterium_ulcerans-0.098.96e-050.000174
speciesLachnospiraceae_bacterium_3_1_46FAA0.090.0001040.000201
genusWeissella0.090.0001050.000202
speciesMegamonas_rupellensis-0.0890.0001120.000215
speciesParabacteroides_unclassified-0.0880.0001390.000266
genusKlebsiella-0.0880.0001460.000278
genusDesulfovibrio-0.0870.0001570.000298
genusPorphyromonas0.0870.0001610.000304
speciesBilophila_unclassified-0.0870.000170.00032
speciesLactobacillus_mucosae0.0860.0001970.000369
genusOxalobacter-0.0860.0002040.000379
speciesOxalobacter_formigenes-0.0860.0002040.000379
speciesFusobacterium_varium-0.0860.0002070.000383
speciesLachnospiraceae_bacterium_6_1_63FAA0.0860.000210.000387
speciesAlistipes_senegalensis-0.0850.0002510.000461
genusBilophila-0.0840.0002630.000481
speciesMegamonas_hypermegale-0.0840.0002790.000508
speciesBacteroides_coprocola-0.0840.0002960.000537
speciesWeissella_cibaria0.0830.0003440.000622
genusPseudoflavonifractor0.0820.00040.000718
speciesPseudoflavonifractor_capillosus0.0820.00040.000718
speciesClostridium_sp_KLE_17550.0820.0004150.000742
speciesLactobacillus_vaginalis0.0810.0004280.000762
familyOxalobacteraceae-0.080.0005240.00093
speciesLachnospiraceae_bacterium_9_1_43BFAA0.080.0005790.00102
speciesClostridium_spiroforme0.0780.0007090.00125
speciesParabacteroides_johnsonii-0.0780.0007680.00135
speciesBacteroides_fragilis-0.0760.0010.00175
speciesMethanobrevibacter_smithii0.0750.001110.00193
speciesClostridium_hathewayi0.0750.001120.00194
speciesRuminococcus_lactaris0.0750.001120.00194
familyOscillospiraceae-0.0750.001250.00213
genusRuminococcaceae_noname0.0750.001250.00213
genusOscillibacter-0.0750.001250.00213
speciesRuminococcaceae_bacterium_D160.0750.001250.00213
genusMethanobrevibacter0.0750.001260.00214
speciesDesulfovibrio_piger-0.0740.001390.00235
speciesAlistipes_indistinctus-0.0730.001520.00256
speciesPorphyromonas_asaccharolytica0.0710.002080.00349
speciesLactobacillus_sanfranciscensis0.0710.002250.00377
speciesHoldemania_unclassified0.070.002350.00392
speciesOscillibacter_unclassified-0.070.002460.00409
speciesWeissella_confusa0.0690.002690.00446
phylumEuryarchaeota0.0690.002780.00459
classMethanobacteria0.0690.002940.0048
orderMethanobacteriales0.0690.002940.0048
familyMethanobacteriaceae0.0690.002940.0048
speciesBacteroides_coprophilus-0.0690.003030.00493
speciesAlistipes_unclassified0.0680.003050.00495
speciesParabacteroides_sp_D13-0.0670.003520.00569
speciesEubacterium_dolichum0.0660.004120.00664
orderViruses_noname0.0660.004310.00692
speciesLactobacillus_crispatus0.0660.004580.00733
genusParaprevotella-0.0650.004870.00776
speciesAlistipes_sp_AP110.0650.00490.00776
speciesAlistipes_onderdonkii-0.0650.00490.00776
speciesDesulfovibrio_desulfuricans-0.0630.006390.0101
genusEnterobacter-0.0630.006590.0104
speciesEnterobacter_cloacae-0.0630.006610.0104
speciesParaprevotella_unclassified-0.0630.00670.0105
speciesClostridium_bolteae0.0630.006710.0105
speciesRoseburia_inulinivorans-0.0630.00680.0106
speciesClostridium_nexile-0.060.009070.014
speciesParaprevotella_clara-0.0590.01010.0156
speciesEubacterium_sp_3_1_310.0590.01020.0157
speciesLactococcus_garvieae0.0580.01230.0188
speciesLactobacillus_oris0.0560.01510.0231
speciesBilophila_wadsworthia-0.0550.0170.0259
speciesVeillonella_dispar-0.0550.01710.026
speciesBacteroides_clarus-0.0550.01720.026
genusSutterella-0.0540.01880.0284
speciesAcidaminococcus_unclassified0.0540.0190.0286
speciesMitsuokella_unclassified0.0540.02010.0301
genusMitsuokella0.0540.02020.0302
genusActinobacillus-0.0540.02040.0303
speciesActinobacillus_unclassified-0.0540.02040.0303
speciesAlistipes_sp_HGB5-0.0530.02150.0318
speciesMitsuokella_multacida-0.0530.0220.0324
speciesOdoribacter_laneus0.0530.02260.0332
speciesPorphyromonas_uenonis0.0520.0240.0352
speciesCampylobacter_concisus-0.0520.02410.0352
speciesBacteroides_sp_3_1_19-0.0520.02490.0363
speciesVeillonella_unclassified-0.0510.02650.0385
genusButyricicoccus0.0510.02690.0388
speciesButyricicoccus_pullicaecorum0.0510.02690.0388
speciesLeuconostoc_lactis0.0510.02890.0416
speciesPrevotella_bivia0.050.03230.0463
speciesRoseburia_unclassified0.0490.0330.0472
speciesEscherichia_unclassified0.0490.03420.0488
speciesBacteroides_eggerthii-0.0490.03430.0488
speciesEubacterium_siraeum0.0490.03480.0493
genusAcidaminococcus0.0480.0380.0537
speciesClostridium_symbiosum0.0480.03950.0557
orderAeromonadales-0.0470.04320.0607
speciesLachnospiraceae_bacterium_8_1_57FAA0.0460.04530.0634
genusMegasphaera-0.0460.04570.0638
speciesCoprobacillus_sp_29_10.0460.04650.0647
speciesStreptococcus_phage_Sfi210.0450.04930.0684
speciesSutterella_wadsworthensis-0.0450.05160.0714
speciesLactococcus_phage_bIL670.0440.05740.0792
genusLambdalikevirus0.0430.06350.0874
speciesStreptococcus_lutetiensis0.0430.06540.0897
genusAnaerotruncus0.0420.06770.0926
speciesVeillonella_atypica-0.0410.07480.102
speciesMegasphaera_micronuciformis-0.0410.07750.105
speciesKlebsiella_oxytoca0.0410.07960.108
speciesCollinsella_tanakaei-0.040.08230.111
genusC2likevirus0.040.08450.114
speciesAnaerostipes_unclassified0.0390.09020.121
speciesLactococcus_phage_jm20.0390.09190.123
phylumSynergistetes-0.0390.09380.124
classSynergistia-0.0390.09380.124
orderSynergistales-0.0390.09380.124
familySynergistaceae-0.0390.09380.124
speciesButyrivibrio_unclassified0.0380.1010.134
speciesClostridium_asparagiforme0.0380.1050.138
speciesC2likevirus_unclassified0.0370.1080.142
genusAggregatibacter-0.0370.1090.143
classEpsilonproteobacteria-0.0350.1260.164
orderCampylobacterales-0.0350.1260.164
speciesCoprococcus_sp_ART55_10.0350.1350.176
speciesLactobacillus_salivarius0.0340.1380.179
speciesBacteroides_fluxus-0.0340.1460.189
genusSlackia0.0340.1470.19
genusMethanosphaera0.0330.150.192
speciesMethanosphaera_stadtmanae0.0330.150.192
speciesSutterella_parvirubra-0.0330.1520.194
genusPyramidobacter-0.0330.1560.198
speciesPyramidobacter_piscolens-0.0330.1560.198
genusCampylobacter-0.0330.1570.199
speciesMethanobrevibacter_unclassified0.0320.1630.206
speciesAggregatibacter_segnis-0.0320.1690.213
speciesLactobacillus_reuteri0.0320.1690.213
familyCampylobacteraceae-0.0310.1760.221
speciesBacteroides_pectinophilus-0.0310.1790.224
genusPhascolarctobacterium-0.030.1930.24
speciesPhascolarctobacterium_succinatutens-0.030.1930.24
speciesBacteroides_sp_2_1_22-0.030.1980.246
genusEscherichia0.030.20.248
genusPantoea-0.0290.2030.25
speciesPantoea_unclassified-0.0290.2030.25
speciesLactococcus_phage_936_sensu_lato-0.0290.210.258
speciesCollinsella_unclassified-0.0290.2160.265
genusCatenibacterium-0.0290.2170.265
speciesCatenibacterium_mitsuokai-0.0290.2170.265
speciesFusobacterium_nucleatum0.0280.220.268
familyVeillonellaceae0.0280.2210.268
familyBacteroidales_noname-0.0270.2360.284
genusBacteroidales_noname-0.0270.2360.284
speciesBacteroidales_bacterium_ph8-0.0270.2360.284
speciesButyrivibrio_crossotus-0.0270.2510.301
genusSuccinatimonas-0.0260.2540.304
speciesSuccinatimonas_hippei-0.0260.2540.304
genusVeillonella-0.0260.2610.311
speciesEscherichia_coli0.0260.2680.319
classGammaproteobacteria-0.0260.270.32
speciesBacteroides_sp_1_1_6-0.0250.2750.325
familySuccinivibrionaceae-0.0230.3130.369
speciesMegasphaera_unclassified-0.0220.350.412
speciesOdoribacter_unclassified0.0210.360.423
speciesLachnospiraceae_bacterium_7_1_58FAA0.020.3770.442
speciesHaemophilus_sputorum0.020.3810.445
genusBarnesiella0.020.3890.452
speciesBarnesiella_intestinihominis0.020.3890.452
speciesKlebsiella_unclassified-0.020.3930.456
speciesLactococcus_phage_phi70.0190.40.463
speciesEnterobacter_aerogenes-0.0190.4140.478
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0170.4530.521
speciesVeillonella_parvula-0.0170.4540.521
genusAcidaminococcaceae_unclassified0.0170.460.527
speciesAcidaminococcus_intestini0.0160.4890.559
speciesClostridium_citroniae0.0160.4980.567
genusClostridiaceae_noname0.0160.50.567
speciesClostridiaceae_bacterium_JC1180.0160.50.567
speciesClostridium_perfringens-0.0150.5070.572
speciesCollinsella_intestinalis0.0150.5070.572
orderEnterobacteriales0.0140.5380.605
familyEnterobacteriaceae0.0140.5380.605
speciesDialister_succinatiphilus0.0130.5630.631
genusRoseburia-0.0130.5730.641
speciesHaemophilus_paraphrohaemolyticus-0.0130.5780.645
speciesRuminococcus_champanellensis-0.0130.5870.653
speciesKlebsiella_phage_KP36-0.0120.5960.662
speciesBifidobacterium_angulatum0.0120.6030.668
genusMorganella0.0120.6170.68
speciesMorganella_morganii0.0120.6170.68
genusClostridiales_noname-0.0110.6230.685
genusMyoviridae_noname0.0110.6270.688
speciesEubacterium_biforme0.0110.6310.691
speciesClostridium_sp_L2_500.0110.6450.705
speciesOscillibacter_sp_KLE_1745-0.0110.6490.707
speciesStreptococcus_infantarius-0.010.6620.72
genusCoprobacter-0.0090.6850.742
speciesCoprobacter_fastidiosus-0.0090.6850.742
speciesCitrobacter_unclassified0.0090.6910.746
speciesBacteroides_barnesiae-0.0090.6930.747
familyMyoviridae0.0090.6960.748
speciesAnaerotruncus_unclassified0.0080.7360.79
familyClostridiales_noname0.0080.7410.793
speciesKlebsiella_sp_MS_92_30.0070.750.8
speciesHoldemania_sp_AP20.0070.7510.8
genusCitrobacter0.0060.7920.842
speciesClostridiales_bacterium_1_7_47FAA0.0060.7950.842
speciesClostridium_sp_ATCC_BAA_442-0.0060.7960.842
speciesMegasphaera_elsdenii-0.0060.7970.842
speciesProteus_mirabilis0.0060.8010.844
genusTunalikevirus-0.0060.8090.85
speciesParabacteroides_sp_20_30.0050.8350.874
speciesSlackia_piriformis0.0050.8360.874
familyViruses_noname0.0050.8390.874
genusViruses_noname0.0050.8390.874
speciesStreptococcus_pasteurianus-0.0040.8490.883
familyPodoviridae0.0040.8530.885
speciesEnterobacteria_phage_HK544-0.0040.8570.887
speciesRoseburia_intestinalis0.0040.8630.891
speciesLactobacillus_ruminis0.0040.870.897
speciesCoprococcus_eutactus0.0040.8770.902
classNegativicutes0.0030.8890.91
orderSelenomonadales0.0030.8890.91
speciesBacteroides_salanitronis-0.0030.8980.917
speciesRuminococcus_callidus-0.0030.9090.927
speciesRoseburia_hominis0.0020.9140.93
genusFlavonifractor0.0020.9190.931
speciesFlavonifractor_plautii0.0020.9190.931
speciesAcidaminococcus_fermentans0.0020.9250.935
speciesCitrobacter_freundii-0.0020.9430.951
speciesBacteroides_sp_4_3_47FAA-0.0010.9830.989
genusButyrivibrio0.00.9910.994
genusProteus0.00.9920.994
familyAcidaminococcaceae0.01.01.0
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.1588751990570.0772502666080.0031585414397224618.13312
Ulcerative colitisSpain78660.1425411255910.122593489550.0603917243793527417.3979
Crohns diseaseSpain17660.1418261866710.122593489550.1378575103971513250.3142
Type II diabetesDenmark752770.06107946603640.05624255184430.1861743294361262641.3872
Colorectal cancerAustria64350.4542371462480.5736228466990.2460076009021036635.0724
Type II diabetesSweden53920.2616372196540.2511676993820.3227900825191110637.6092
Rheumatoid arthritisChina127980.1273164869140.1088751703720.4987578398551763258.7988
ObesityDenmark1691230.05422583763410.05868804482510.6356785367842245373.8318
Liver cirrhosisChina1201140.05616973868470.04429190201640.8317490242342803694.1785
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382