MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-05-22 00:21:18 PST
Job id & description: 1850, LY_Rg3a
Query type: dna
Count queries & homologs: 1, 1
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
Rg3a3612832Lack 5'-endK00076COG1028FirmicutesBlautia100.099.2199.87
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesRuminococcus_gnavus0.6875.64e-2612.66e-258
speciesCoprobacillus_unclassified0.4163.55e-798.38e-77
genusCoprobacillus0.3941.67e-702.63e-68
speciesClostridium_ramosum0.3811.47e-651.73e-63
speciesLachnospiraceae_bacterium_9_1_43BFAA0.3773.17e-642.99e-62
speciesLachnospiraceae_bacterium_2_1_58FAA0.3691.47e-611.16e-59
speciesSubdoligranulum_unclassified-0.3451.68e-531.13e-51
speciesClostridium_bolteae0.3452.69e-531.59e-51
genusSubdoligranulum-0.3353.54e-501.86e-48
speciesClostridium_nexile0.331.19e-485.62e-47
speciesLachnospiraceae_bacterium_6_1_63FAA0.3051.18e-415.06e-40
genusEggerthella0.2963.51e-391.38e-37
speciesEggerthella_unclassified0.2956.33e-392.3e-37
genusBlautia0.2957.02e-392.37e-37
speciesCoprococcus_catus-0.291.43e-374.5e-36
speciesAlistipes_senegalensis-0.2893.2e-379.44e-36
speciesLachnospiraceae_bacterium_1_4_56FAA0.2837.1e-361.97e-34
speciesBlautia_producta0.2821.54e-353.69e-34
familyBacteroidales_noname-0.2821.64e-353.69e-34
genusBacteroidales_noname-0.2821.64e-353.69e-34
speciesBacteroidales_bacterium_ph8-0.2821.64e-353.69e-34
genusCoprococcus-0.2812.18e-354.68e-34
phylumFusobacteria0.2772.24e-344.1e-33
classFusobacteriia0.2772.24e-344.1e-33
orderFusobacteriales0.2772.24e-344.1e-33
speciesClostridium_symbiosum0.2772.26e-344.1e-33
familyFusobacteriaceae0.2764.9e-348.57e-33
speciesClostridium_clostridioforme0.2765.51e-349.29e-33
genusFusobacterium0.2741.25e-332.03e-32
genusFlavonifractor0.2691.88e-322.86e-31
speciesFlavonifractor_plautii0.2691.88e-322.86e-31
speciesAlistipes_shahii-0.2683.84e-325.66e-31
speciesAnaerostipes_unclassified0.2684.86e-326.95e-31
speciesAnaerotruncus_unclassified-0.2675.8e-328.05e-31
speciesRoseburia_hominis-0.2635.51e-317.43e-30
speciesClostridiales_bacterium_1_7_47FAA0.262.65e-303.47e-29
speciesEubacterium_siraeum-0.2562.18e-292.78e-28
genusOdoribacter-0.255.99e-287.44e-27
familyRuminococcaceae-0.2422.36e-262.86e-25
familyRikenellaceae-0.2423.01e-263.47e-25
genusAlistipes-0.2423.01e-263.47e-25
genusButyrivibrio-0.2373.35e-253.76e-24
speciesOdoribacter_splanchnicus-0.2331.57e-241.72e-23
speciesEubacterium_eligens-0.2323.16e-243.39e-23
familyClostridiaceae0.2272.28e-232.39e-22
speciesClostridium_hathewayi0.2273.38e-233.47e-22
speciesAlistipes_putredinis-0.2265.01e-235.03e-22
genusClostridium0.2249.84e-239.68e-22
speciesErysipelotrichaceae_bacterium_2_2_44A0.2231.47e-221.42e-21
speciesLachnospiraceae_bacterium_5_1_57FAA0.2222.3e-222.17e-21
genusBarnesiella-0.226.51e-225.91e-21
speciesBarnesiella_intestinihominis-0.226.51e-225.91e-21
speciesEubacterium_dolichum0.2163.82e-213.4e-20
speciesCoprococcus_comes-0.2154.69e-214.1e-20
phylumEuryarchaeota-0.2147.65e-216.57e-20
classMethanobacteria-0.2131.48e-201.2e-19
orderMethanobacteriales-0.2131.48e-201.2e-19
familyMethanobacteriaceae-0.2131.48e-201.2e-19
speciesMethanobrevibacter_smithii-0.2121.68e-201.34e-19
speciesEscherichia_coli0.2112.99e-202.35e-19
speciesAlistipes_finegoldii-0.214.22e-203.27e-19
genusEscherichia0.215.26e-204e-19
genusMethanobrevibacter-0.2081.1e-198.24e-19
speciesEubacterium_biforme-0.2071.54e-191.14e-18
genusOxalobacter-0.2044.85e-193.47e-18
speciesOxalobacter_formigenes-0.2044.85e-193.47e-18
speciesCoprococcus_sp_ART55_1-0.2037.34e-195.17e-18
speciesRuminococcus_callidus-0.2011.46e-181.01e-17
familyOxalobacteraceae-0.2011.75e-181.2e-17
speciesButyrivibrio_crossotus-0.2011.98e-181.34e-17
orderEnterobacteriales0.1942.78e-171.82e-16
familyEnterobacteriaceae0.1942.78e-171.82e-16
speciesRuminococcus_lactaris-0.1942.89e-171.87e-16
speciesStreptococcus_mitis_oralis_pneumoniae0.1933.89e-172.48e-16
speciesEubacterium_ramulus-0.1925.86e-173.69e-16
classGammaproteobacteria0.1926.56e-174.07e-16
speciesClostridium_citroniae0.1919.59e-175.88e-16
phylumVerrucomicrobia-0.191.37e-167.79e-16
classVerrucomicrobiae-0.191.37e-167.79e-16
orderVerrucomicrobiales-0.191.37e-167.79e-16
familyVerrucomicrobiaceae-0.191.37e-167.79e-16
genusAkkermansia-0.191.37e-167.79e-16
speciesAkkermansia_muciniphila-0.191.37e-167.79e-16
genusAnaerotruncus-0.1891.45e-168.15e-16
speciesBifidobacterium_adolescentis-0.1892.02e-161.12e-15
speciesEggerthella_lenta0.1865.21e-162.86e-15
familyClostridiales_noname0.1857.79e-164.23e-15
genusFaecalibacterium-0.1831.66e-158.8e-15
speciesFaecalibacterium_prausnitzii-0.1831.66e-158.8e-15
genusClostridiales_noname0.1822.2e-151.15e-14
familyEubacteriaceae-0.1822.58e-151.34e-14
genusEubacterium-0.1812.68e-151.37e-14
genusMitsuokella-0.184.85e-152.46e-14
speciesMitsuokella_unclassified-0.184.94e-152.48e-14
speciesClostridium_sp_L2_50-0.1788.49e-154.22e-14
speciesFusobacterium_ulcerans0.1789.13e-154.49e-14
familyBacillales_noname0.1771.14e-145.49e-14
genusGemella0.1771.14e-145.49e-14
speciesFusobacterium_varium0.1761.75e-148.34e-14
speciesEubacterium_rectale-0.1752.56e-141.21e-13
speciesBacteroides_fragilis0.1743.21e-141.5e-13
genusDesulfovibrio-0.1726.3e-142.92e-13
familyBacteroidaceae0.1719.19e-144.17e-13
genusBacteroides0.1719.19e-144.17e-13
speciesLachnospiraceae_bacterium_2_1_46FAA0.1692.18e-139.8e-13
speciesParaprevotella_xylaniphila-0.1674.06e-131.81e-12
speciesAlistipes_indistinctus-0.1665.74e-132.53e-12
speciesFusobacterium_mortiferum0.1657.61e-133.33e-12
speciesParaprevotella_clara-0.1658.13e-133.51e-12
genusParaprevotella-0.1658.18e-133.51e-12
speciesParaprevotella_unclassified-0.1631.19e-125.06e-12
genusCoprobacter-0.1631.4e-125.85e-12
speciesCoprobacter_fastidiosus-0.1631.4e-125.85e-12
genusPseudoflavonifractor-0.163.58e-121.47e-11
speciesPseudoflavonifractor_capillosus-0.163.58e-121.47e-11
speciesEubacterium_ventriosum-0.1585.47e-122.23e-11
orderBacillales0.1579.54e-123.85e-11
speciesCollinsella_aerofaciens-0.1561.32e-115.28e-11
phylumProteobacteria0.1542.32e-119.2e-11
genusSolobacterium0.1532.53e-119.87e-11
speciesSolobacterium_moorei0.1532.53e-119.87e-11
speciesKlebsiella_pneumoniae0.1498.35e-113.23e-10
speciesDorea_longicatena-0.1498.6e-113.3e-10
classClostridia-0.1491e-103.78e-10
orderClostridiales-0.1491e-103.78e-10
genusKlebsiella0.1481.42e-105.32e-10
genusCatenibacterium-0.1481.45e-105.35e-10
speciesCatenibacterium_mitsuokai-0.1481.45e-105.35e-10
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1462.06e-107.54e-10
speciesCoprococcus_eutactus-0.1462.59e-109.4e-10
speciesFusobacterium_nucleatum0.1452.69e-109.69e-10
speciesDesulfovibrio_piger-0.1427.42e-102.65e-09
speciesAlistipes_onderdonkii-0.1418.16e-102.9e-09
speciesStreptococcus_sanguinis0.1372.89e-091.02e-08
speciesMethanobrevibacter_unclassified-0.1363.62e-091.27e-08
speciesMegasphaera_micronuciformis0.1363.69e-091.28e-08
speciesOlsenella_unclassified-0.1337.11e-092.45e-08
speciesStreptococcus_lutetiensis0.1338.55e-092.92e-08
familyPrevotellaceae-0.131.9e-086.45e-08
genusAdlercreutzia-0.1292.04e-086.83e-08
speciesAdlercreutzia_equolifaciens-0.1292.04e-086.83e-08
speciesRuminococcus_obeum-0.1282.47e-088.21e-08
genusButyricicoccus0.1282.55e-088.36e-08
speciesButyricicoccus_pullicaecorum0.1282.55e-088.36e-08
speciesClostridium_leptum-0.1273.17e-081.03e-07
genusEnterococcus0.1273.71e-081.2e-07
speciesClostridium_asparagiforme0.1264.19e-081.35e-07
genusCollinsella-0.1264.54e-081.45e-07
speciesStreptococcus_australis0.1264.73e-081.5e-07
genusPeptostreptococcus0.1255.52e-081.74e-07
genusStreptococcus0.1255.86e-081.83e-07
genusActinomyces0.1246.75e-082.1e-07
familyEnterococcaceae0.1248.36e-082.58e-07
speciesClostridium_sp_ATCC_BAA_4420.1239.28e-082.84e-07
familyStreptococcaceae0.1221.12e-073.41e-07
familyActinomycetaceae0.1221.27e-073.84e-07
speciesLactobacillus_salivarius0.1211.6e-074.81e-07
speciesRuminococcus_bromii-0.1211.65e-074.93e-07
speciesParabacteroides_merdae-0.121.84e-075.46e-07
speciesRuminococcus_torques0.121.98e-075.84e-07
speciesEubacterium_sp_3_1_310.122.14e-076.27e-07
speciesVeillonella_parvula0.1192.34e-076.82e-07
speciesStreptococcus_pasteurianus0.1192.64e-077.64e-07
genusVeillonella0.1182.98e-078.58e-07
genusPantoea0.1174.27e-071.21e-06
speciesPantoea_unclassified0.1174.27e-071.21e-06
speciesRuminococcus_champanellensis-0.1174.36e-071.23e-06
speciesPeptostreptococcus_stomatis0.1165.39e-071.51e-06
genusOlsenella-0.1156.22e-071.74e-06
speciesPrevotella_buccae0.1147.91e-072.2e-06
classBacilli0.1147.97e-072.2e-06
speciesVeillonella_dispar0.1148.08e-072.22e-06
speciesEnterococcus_faecium0.1138.8e-072.4e-06
orderLactobacillales0.1139.27e-072.51e-06
speciesDesulfovibrio_desulfuricans-0.1131.05e-062.83e-06
speciesErysipelotrichaceae_bacterium_3_1_530.1121.08e-062.89e-06
genusClostridiaceae_noname0.1121.09e-062.89e-06
speciesClostridiaceae_bacterium_JC1180.1121.09e-062.89e-06
speciesErysipelotrichaceae_bacterium_6_1_450.1121.14e-063.01e-06
genusMegasphaera0.1121.15e-063.02e-06
phylumFirmicutes-0.1111.35e-063.52e-06
speciesLactobacillus_ruminis-0.111.8e-064.67e-06
speciesBacteroides_pectinophilus-0.111.85e-064.77e-06
speciesGemella_morbillorum0.1073.52e-069.03e-06
speciesBacteroides_cellulosilyticus-0.1064.08e-061.04e-05
genusLachnospiraceae_noname0.1055.06e-061.28e-05
speciesStreptococcus_anginosus0.1055.83e-061.47e-05
speciesButyrivibrio_unclassified-0.1038.76e-062.2e-05
speciesEubacterium_hallii-0.1029.11e-062.28e-05
speciesVeillonella_atypica0.1021.02e-052.53e-05
speciesStreptococcus_vestibularis0.1011.23e-053.04e-05
speciesParabacteroides_unclassified0.11.41e-053.47e-05
genusMethanosphaera-0.11.49e-053.63e-05
speciesMethanosphaera_stadtmanae-0.11.49e-053.63e-05
speciesBifidobacterium_pseudocatenulatum0.0991.9e-054.6e-05
speciesStreptococcus_gordonii0.0972.5e-056.02e-05
speciesMitsuokella_multacida-0.0963.02e-057.24e-05
speciesLactobacillus_mucosae0.0954.19e-059.99e-05
genusButyricimonas-0.0944.69e-050.000111
speciesButyricimonas_synergistica-0.0944.69e-050.000111
speciesStreptococcus_infantarius0.0926.6e-050.000155
speciesCollinsella_intestinalis0.0927.18e-050.000168
speciesLactobacillus_rhamnosus0.0918.03e-050.000187
genusRuminococcus-0.0918.33e-050.000193
orderActinomycetales0.0890.0001090.000251
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0880.0001330.000305
speciesStreptococcus_salivarius0.0880.0001340.000306
speciesSutterella_wadsworthensis-0.0870.0001660.000377
speciesAggregatibacter_segnis0.0870.0001690.000382
speciesCampylobacter_concisus0.0860.0001970.000441
speciesBlautia_hydrogenotrophica0.0860.0001970.000441
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0850.0002270.000505
speciesLactobacillus_fermentum0.0850.0002530.000561
genusAggregatibacter0.0840.0002640.000582
speciesClostridium_bartlettii0.0840.0002710.000594
genusDorea-0.0840.0002720.000594
speciesRoseburia_inulinivorans-0.0840.0002930.000637
speciesEubacterium_limosum0.0830.0003040.000657
genusSutterella-0.0830.0003050.000657
speciesHoldemania_sp_AP20.0830.0003060.000657
classDeltaproteobacteria-0.0830.0003460.000732
orderDesulfovibrionales-0.0830.0003460.000732
familyDesulfovibrionaceae-0.0830.0003460.000732
genusMorganella0.0820.0003650.000766
speciesMorganella_morganii0.0820.0003650.000766
speciesStreptococcus_parasanguinis0.0810.000450.00094
speciesSubdoligranulum_sp_4_3_54A2FAA0.0810.0004740.000986
speciesEnterococcus_faecalis0.080.0005030.00104
speciesLactobacillus_crispatus0.080.000510.00105
speciesVeillonella_unclassified0.080.0005470.00112
familyLactobacillaceae0.0790.0006140.00125
speciesBacteroides_coprophilus-0.0790.0006360.00129
speciesAlistipes_sp_HGB5-0.0780.0006810.00138
genusPhascolarctobacterium-0.0780.0006960.0014
speciesPhascolarctobacterium_succinatutens-0.0780.0006960.0014
speciesKlebsiella_unclassified0.0770.0008010.0016
familyMyoviridae0.0770.0009250.00184
speciesBifidobacterium_dentium0.0760.001020.00202
genusMegamonas0.0760.001040.00205
speciesMegamonas_unclassified0.0760.001070.0021
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0750.00110.00215
genusAnaerostipes0.0750.001150.00224
genusCampylobacter0.0750.00120.00233
speciesAnaerotruncus_colihominis0.0740.001270.00246
speciesBacteroides_stercoris0.0740.001290.00249
speciesBifidobacterium_angulatum-0.0740.001310.00251
genusLactobacillus0.0740.001430.00273
genusRuminococcaceae_noname-0.0730.001660.00315
speciesRuminococcaceae_bacterium_D16-0.0730.001660.00315
speciesAlistipes_sp_AP11-0.0730.001680.00316
speciesBacteroides_finegoldii-0.0730.001680.00316
familyCampylobacteraceae0.0720.001940.00363
familyPorphyromonadaceae-0.0710.001990.00371
genusRoseburia-0.0710.002090.00388
speciesStreptococcus_mutans0.0710.002180.00404
speciesEscherichia_unclassified0.070.002530.00466
genusParasutterella-0.0690.002780.00509
speciesParasutterella_excrementihominis-0.0690.002780.00509
speciesAcidaminococcus_intestini0.0680.003410.00621
speciesDorea_formicigenerans-0.0670.003750.00681
speciesLactobacillus_gasseri0.0670.00380.00687
familyPeptostreptococcaceae0.0660.004050.0073
speciesClostridium_perfringens0.0660.00420.00754
speciesDialister_succinatiphilus-0.0660.004530.0081
familyClostridiales_Family_XI_Incertae_Sedis0.0650.004790.00853
speciesOscillibacter_unclassified-0.0650.005130.0091
classEpsilonproteobacteria0.0640.005320.00937
orderCampylobacterales0.0640.005320.00937
genusActinobacillus0.0640.005450.00953
speciesActinobacillus_unclassified0.0640.005450.00953
speciesBacteroides_thetaiotaomicron0.0630.006220.0108
genusPeptostreptococcaceae_noname0.0610.007970.0138
speciesBacteroides_uniformis-0.0610.00820.0142
familyOscillospiraceae-0.0610.008580.0147
genusOscillibacter-0.0610.008580.0147
speciesLactobacillus_delbrueckii0.0610.008760.015
speciesMegasphaera_unclassified0.060.009050.0154
speciesLactococcus_phage_936_sensu_lato-0.0590.01010.0171
speciesLactobacillus_vaginalis0.0590.01030.0174
speciesLachnospiraceae_bacterium_5_1_63FAA0.0590.01030.0174
orderPseudomonadales0.0590.01050.0176
speciesLactobacillus_oris0.0590.01090.0182
speciesWeissella_cibaria0.0580.01240.0207
familyLeuconostocaceae0.0580.01260.0209
speciesRothia_mucilaginosa0.0570.01310.0217
speciesCollinsella_unclassified0.0570.01340.0221
genusProteus0.0560.01460.024
genusDialister-0.0560.01590.0261
speciesBifidobacterium_breve0.0550.01760.0287
familyAcidaminococcaceae-0.0540.01890.0308
speciesBacteroides_ovatus0.0540.01990.0323
speciesOdoribacter_laneus-0.0540.02040.033
speciesBacteroides_intestinalis-0.0530.02130.0343
genusMyoviridae_noname0.0530.02160.0347
speciesBacteroides_salanitronis-0.0520.02350.0376
phylumBacteroidetes0.0510.0260.0412
classBacteroidia0.0510.0260.0412
orderBacteroidales0.0510.0260.0412
speciesCoriobacteriaceae_bacterium_phI0.0510.02620.0414
familyMicrococcaceae0.0510.02670.042
speciesCitrobacter_unclassified0.0510.02720.0427
genusWeissella0.0510.02740.0428
genusRothia0.0510.02810.0438
speciesDorea_unclassified0.0510.02860.0444
speciesRoseburia_intestinalis-0.050.030.0464
speciesBacteroides_eggerthii-0.050.03170.0489
speciesPrevotella_copri-0.050.03210.0493
speciesProteus_mirabilis0.050.03220.0493
genusCitrobacter0.0490.03560.0544
genusCoriobacteriaceae_noname0.0480.03730.0568
speciesClostridium_spiroforme0.0480.03860.0586
speciesCollinsella_tanakaei0.0460.0480.0726
speciesHaemophilus_paraphrohaemolyticus0.0460.04830.0728
speciesParabacteroides_sp_D13-0.0450.05270.0792
speciesAnaerostipes_hadrus-0.0440.05640.0845
speciesMegamonas_rupellensis0.0440.05720.0854
genusPrevotella-0.0430.06090.0907
speciesErysipelotrichaceae_bacterium_21_30.0430.06120.0908
speciesEnterobacteria_phage_HK5440.0430.06210.0919
familySutterellaceae-0.0430.06240.092
speciesKlebsiella_oxytoca0.0430.06270.0922
speciesAcidaminococcus_fermentans-0.0420.0670.0982
speciesLactococcus_phage_P680-0.0420.06720.0982
familyPropionibacteriaceae0.0420.0690.101
speciesHaemophilus_sputorum0.0420.06950.101
speciesBacteroides_faecis-0.0420.07050.102
speciesLactobacillus_amylovorus0.0420.07130.103
speciesTuricibacter_unclassified-0.0410.07420.107
familySuccinivibrionaceae-0.0410.07610.109
familyStaphylococcaceae0.040.08210.117
speciesPeptostreptococcaceae_noname_unclassified-0.040.08220.117
genusTuricibacter-0.040.08240.117
speciesStreptococcus_phage_Sfi210.040.08470.12
genusPeptoniphilus0.0390.09020.127
speciesC2likevirus_unclassified-0.0390.0940.132
genusSuccinatimonas-0.0390.09450.132
speciesSuccinatimonas_hippei-0.0390.09450.132
genusParvimonas0.0390.09510.133
speciesBacteroides_vulgatus0.0390.09580.133
speciesParvimonas_unclassified0.0380.09620.134
speciesCitrobacter_freundii0.0380.09830.136
speciesPrevotella_bivia0.0380.1030.142
speciesBacteroides_caccae-0.0370.1050.144
familyBurkholderiales_noname-0.0370.1070.147
genusBurkholderiales_noname-0.0370.110.15
speciesBurkholderiales_bacterium_1_1_47-0.0370.110.15
genusHaemophilus0.0370.1110.151
speciesRuminococcus_sp_JC3040.0370.1130.153
speciesClostridium_sp_KLE_17550.0370.1140.154
genusC2likevirus-0.0360.1170.158
genusHoldemania0.0360.1190.16
speciesHaemophilus_parainfluenzae0.0360.120.161
orderBurkholderiales-0.0360.1210.162
orderPasteurellales0.0360.1220.162
familyPasteurellaceae0.0360.1220.162
speciesEnterobacter_aerogenes0.0360.1250.165
speciesRoseburia_unclassified-0.0350.1250.165
speciesBilophila_unclassified-0.0350.1260.166
genusLeuconostoc0.0350.130.171
speciesParabacteroides_goldsteinii-0.0350.1340.176
speciesAcidaminococcus_unclassified0.0340.1440.188
speciesMegamonas_hypermegale0.0340.1470.192
speciesBacteroides_fluxus0.0330.1510.196
speciesOscillibacter_sp_KLE_17280.0330.1520.197
speciesLactobacillus_reuteri0.0320.160.207
genusBilophila-0.0320.1630.21
speciesLactococcus_phage_phi7-0.0320.1660.213
classBetaproteobacteria-0.0320.1690.217
speciesEubacterium_cylindroides-0.0310.1730.221
speciesLactococcus_lactis0.0310.1740.222
speciesAlistipes_unclassified0.0310.1750.222
speciesBacteroides_coprocola-0.0310.1750.222
genusSlackia0.0310.1790.227
genusStaphylococcus0.0310.180.227
genusAcidaminococcus0.0310.1840.232
orderCoriobacteriales-0.030.1880.235
familyCoriobacteriaceae-0.030.1880.235
speciesLachnospiraceae_bacterium_1_1_57FAA0.030.1910.238
speciesKlebsiella_sp_MS_92_30.030.1940.241
speciesEggerthella_sp_1_3_56FAA0.030.1940.241
speciesTuricibacter_sanguinis-0.030.2010.249
speciesOdoribacter_unclassified-0.0290.2050.253
speciesBacteroides_oleiciplenus0.0290.210.259
speciesBacteroides_barnesiae-0.0280.220.27
speciesLactobacillus_sanfranciscensis0.0270.2410.295
speciesOscillibacter_sp_KLE_17450.0270.2410.295
speciesBacteroides_sp_2_1_220.0270.2420.295
classNegativicutes-0.0250.2780.337
orderSelenomonadales-0.0250.2780.337
speciesPeptostreptococcus_anaerobius0.0240.290.351
speciesBacteroides_xylanisolvens0.0240.2970.359
familySiphoviridae-0.0240.30.361
speciesLactobacillus_casei_paracasei0.0230.3210.386
genusAcidaminococcaceae_unclassified-0.0230.3250.389
genusEnterobacter0.0230.3270.391
speciesPrevotella_stercorea0.0220.3320.396
genusParabacteroides0.0220.3330.396
genusGordonibacter-0.0220.340.401
speciesGordonibacter_pamelaeae-0.0220.340.401
speciesEnterobacter_cloacae0.0220.340.401
genusLactococcus0.0220.3430.404
phylumSynergistetes-0.0220.3520.41
classSynergistia-0.0220.3520.41
orderSynergistales-0.0220.3520.41
familySynergistaceae-0.0220.3520.41
classErysipelotrichia0.0210.3570.413
orderErysipelotrichales0.0210.3570.413
familyErysipelotrichaceae0.0210.3570.413
speciesHoldemania_unclassified-0.0210.3610.417
speciesLactobacillus_acidophilus-0.0210.3690.425
speciesStreptococcus_thermophilus0.020.3760.432
speciesDialister_invisus-0.020.3770.432
speciesParabacteroides_johnsonii-0.020.3860.441
familyVeillonellaceae0.020.3890.443
genusPropionibacterium0.020.3950.449
speciesWeissella_confusa0.0190.4040.458
speciesCoprobacillus_sp_D60.0190.4150.47
speciesBifidobacterium_bifidum0.0180.430.486
speciesLactococcus_phage_jm2-0.0180.4420.498
speciesLactococcus_garvieae0.0170.4510.507
speciesBifidobacterium_longum0.0170.4520.507
speciesBacteroides_sp_3_1_190.0170.4640.518
speciesBacteroides_dorei-0.0170.4640.518
speciesBacteroides_salyersiae-0.0170.4680.521
speciesKlebsiella_phage_KP36-0.0160.4770.53
speciesMegamonas_funiformis-0.0160.4780.53
speciesBacteroides_nordii-0.0160.4860.537
genusSiphoviridae_noname-0.0150.5180.571
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0150.5210.573
speciesBifidobacterium_animalis0.0150.5220.573
speciesHoldemania_filiformis-0.0140.5450.596
genusPyramidobacter-0.0140.5470.596
speciesPyramidobacter_piscolens-0.0140.5470.596
speciesBacteroides_plebeius-0.0140.550.598
speciesBacteroides_sp_4_3_47FAA-0.0140.5530.6
speciesPorphyromonas_asaccharolytica-0.0130.5770.625
familyLachnospiraceae0.0120.5950.643
speciesLactobacillus_plantarum0.0120.6020.648
speciesBacteroides_sp_1_1_6-0.0120.6030.648
speciesBacteroides_clarus-0.0120.6050.649
genusLambdalikevirus0.0110.620.663
speciesLeuconostoc_lactis0.0110.6210.663
speciesParabacteroides_sp_20_30.010.6630.706
speciesRuminococcus_sp_5_1_39BFAA0.010.6740.717
speciesLactococcus_phage_bIL670.0090.7080.751
speciesCoprobacillus_sp_29_10.0080.7330.776
speciesSutterella_parvirubra0.0070.7520.794
speciesSlackia_piriformis0.0070.7740.815
familyViruses_noname-0.0060.7910.83
genusViruses_noname-0.0060.7910.83
genusTunalikevirus-0.0060.80.837
speciesMegasphaera_elsdenii-0.0060.8040.84
speciesPropionibacterium_freudenreichii-0.0060.8080.842
genusPorphyromonas-0.0050.8160.848
genusSutterellaceae_unclassified-0.0050.8210.849
orderCaudovirales-0.0050.8220.849
phylumViruses_noname-0.0050.8240.849
classViruses_noname-0.0050.8240.849
orderViruses_noname0.0050.8280.851
orderAeromonadales0.0050.8410.863
speciesBilophila_wadsworthia0.0040.8520.872
speciesBifidobacterium_catenulatum-0.0040.8670.886
phylumActinobacteria0.0030.8870.902
classActinobacteria0.0030.8870.902
familyPodoviridae0.0030.8890.902
speciesPorphyromonas_uenonis-0.0030.90.912
genusBifidobacterium-0.0030.9020.912
genusErysipelotrichaceae_noname0.0020.920.928
speciesBacteroides_massiliensis0.0020.930.936
speciesParabacteroides_distasonis0.0010.9510.955
orderBifidobacteriales0.00.9870.987
familyBifidobacteriaceae0.00.9870.987
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.003657001491060.0004304828212337.32425301136e-066862.28096
Liver cirrhosisChina1201140.00216711015670.0004870351367080.000363271128695636021.3645
Type II diabetesChina1831850.002180995264410.002072322631490.2237860178021405546.449
Type II diabetesSweden53920.0005876271102820.001223072654080.3743693948341230441.6661
ObesityDenmark1691230.0003812619538220.0004189006390660.3987611720241690955.6016
Ulcerative colitisSpain78660.0008520088258160.0004304828212330.4945605962531899662.6641
Rheumatoid arthritisChina127980.001582721839150.0006880509755380.5319170143561835661.2132
Colorectal cancerAustria64350.002509548527330.008996753070890.6907738939782285777.3345
Type II diabetesDenmark752770.0001593721453570.0002629555895330.952258015242961297.0662
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382