MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-06-25 10:05:22 PST
Job id & description: 2025, malQ
Query type: protein
Count queries & homologs: 2, 60
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
WP_000444353.1392209CompleteK00705COG1640ProteobacteriaEscherichia100.0100.099.28
WP_000444353.1393635CompleteK00705COG1640ProteobacteriaEscherichia100.0100.097.41
WP_000444353.1392075CompleteK00705COG1640ProteobacteriaCitrobacter98.5698.5689.78
WP_000444353.1392115CompleteK00705COG1640ProteobacteriaCitrobacter98.5698.5688.91
WP_000444353.1395134CompleteK00705COG1640ProteobacteriaEnterobacter100.0100.085.73
WP_000444353.1396944CompleteK00705COG1640ProteobacteriaEnterobacter99.86100.086.0
WP_000444353.1395345CompleteK00705COG1640ProteobacteriaEnterobacter99.8699.8685.86
WP_000444353.1395074CompleteK00705COG1640ProteobacteriaEnterobacter100.0100.085.3
WP_000444353.1396676CompleteK00705COG1640ProteobacteriaEnterobacter99.86100.085.28
WP_000444353.1387782CompleteK00705COG1640ProteobacteriaKlebsiella98.5698.2883.07
WP_000444353.1388868CompleteK00705COG1640ProteobacteriaKlebsiella98.5698.2882.19
WP_000444353.1387232CompleteK00705COG1640ProteobacteriaKlebsiella98.5698.1482.19
WP_000444353.1398595CompleteK00705COG1640ProteobacteriaEnterobacter99.2899.8679.86
WP_000444353.1473424Lack 5'-endK00705COG1640ProteobacteriaKlebsiella91.7998.1582.1
WP_000444353.1356266CompleteK00705COG1640Proteobacteriaunknown99.7197.564.39
WP_000444353.1336796CompleteK00705COG1640ProteobacteriaSuccinatimonas98.799.4539.86
WP_000444353.1388655CompleteK00705COG1640ProteobacteriaAggregatibacter84.0184.2244.93
WP_000444353.1388920CompleteK00705COG1640ProteobacteriaAggregatibacter84.0184.2245.1
WP_000444353.1386411CompleteK00705COG1640ProteobacteriaHaemophilus88.0487.9742.26
WP_000444353.1339303CompleteK00705COG1640unknownunknown98.4199.8639.51
WP_000444353.1335575CompleteK00705COG1640unknownunknown86.1782.8141.22
WP_000444353.1331066CompleteK00705COG1640unknownunknown85.381.6840.56
WP_000444353.1333961CompleteK02438COG1640unknownunknown98.799.1834.06
WP_000444353.1344146CompleteK02438COG1640unknownunknown86.683.7737.36
WP_000444353.1362111CompleteK00705COG1640unknownunknown84.7381.3738.72
WP_000444353.1318114CompleteK00705COG1640unknownunknown99.1498.6634.63
WP_000444353.1188061CompleteK00705COG1640unknownunknown92.6577.0434.11
WP_000444353.1341310CompleteK02438COG1640unknownunknown98.9999.3134.52
WP_000444353.1318350CompleteK00705COG1640unknownunknown99.7199.3333.78
WP_000444353.1360508CompleteK00705COG1640unknownunknown84.8781.5438.19
WP_000444353.1354914CompleteK00705COG1640unknownunknown84.7381.2234.67
WP_000444353.1360705CompleteK00705COG1640unknownunknown85.8882.6635.1
WP_000444353.1360812CompleteK00705COG1640unknownunknown88.3384.7634.03
WP_000444353.1409684Lack 3'-endK00705COG1640unknownunknown78.6778.8337.79
WP_000444353.1365258CompleteK00705COG1640unknownunknown85.1682.336.77
WP_000444353.1316044CompleteK00705COG1640unknownunknown94.6793.5932.01
WP_000444353.1471701Lack 5'-endK00705COG1640unknownunknown82.2886.9235.12
WP_000444353.1207899CompleteK00705COG3280;COG1640unknownunknown82.5670.6333.72
WP_000444353.1366353CompleteK00705COG1640unknownunknown88.985.9433.49
WP_000444353.1337114CompleteK00705COG1640ActinobacteriaBifidobacterium95.3992.6232.67
WP_000444353.1353723CompleteK00705COG1640ActinobacteriaBifidobacterium91.590.4233.58
WP_000444353.1354255CompleteK00705COG1640ActinobacteriaBifidobacterium95.9794.7231.82
WP_000444353.1350460CompleteK00705COG1640ActinobacteriaBifidobacterium84.2981.633.98
WP_000444353.1353866CompleteK00705COG1640ActinobacteriaBifidobacterium86.0281.9434.8
WP_000444353.1352133CompleteK00705COG1640ActinobacteriaBifidobacterium93.892.0932.16
WP_000444353.1354244CompleteK00705COG1640ActinobacteriaBifidobacterium95.9794.7232.1
WP_000444353.1350745CompleteK00705COG1640ActinobacteriaBifidobacterium93.892.6632.23
WP_000444353.1353204CompleteK00705COG1640ActinobacteriaBifidobacterium95.9794.5931.2
WP_000444353.1353867CompleteK00705COG1640ActinobacteriaBifidobacterium95.9794.7231.72
WP_000444353.1347980CompleteK00705COG1640ActinobacteriaBifidobacterium95.3993.5231.42
WP_000444353.1351808CompleteK00705COG1640ActinobacteriaBifidobacterium84.2981.7233.33
WP_000444353.1350815CompleteK00705COG1640ActinobacteriaBifidobacterium93.891.032.11
WP_000444353.1350478CompleteK00705COG1640ActinobacteriaBifidobacterium91.2186.3132.04
WP_000444353.1295025CompleteK00705COG1640ActinobacteriaBifidobacterium97.5590.2330.77
WP_000444353.1320306CompleteK00705COG1640ActinobacteriaBifidobacterium94.3889.9530.75
WP_000444353.1304829CompleteK00705COG1640unknownunknown97.4192.2331.96
WP_000444353.1325398CompleteK00705COG1640ActinobacteriaBifidobacterium90.9285.0431.02
WP_000444353.1327340CompleteK00705COG1640ActinobacteriaBifidobacterium83.4378.7831.33
WP_000444353.1324184CompleteK00705COG1640ActinobacteriaBifidobacterium94.8190.3130.82
WP_000444353.1331531CompleteK00705COG1640ActinobacteriaActinomyces96.8395.5230.27
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
orderBifidobacteriales0.6425.58e-2181.32e-215
familyBifidobacteriaceae0.6425.58e-2181.32e-215
genusBifidobacterium0.6413.74e-2175.88e-215
phylumActinobacteria0.6071.26e-1881.19e-186
classActinobacteria0.6071.26e-1881.19e-186
speciesBifidobacterium_longum0.5117.57e-1255.96e-123
classBacteroidia-0.4511.96e-941.04e-92
orderBacteroidales-0.4511.96e-941.04e-92
phylumBacteroidetes-0.4511.98e-941.04e-92
orderCoriobacteriales0.3542.02e-568.67e-55
familyCoriobacteriaceae0.3542.02e-568.67e-55
orderEnterobacteriales0.3543.06e-561.11e-54
familyEnterobacteriaceae0.3543.06e-561.11e-54
orderLactobacillales0.3413.82e-521.29e-50
classBacilli0.3375.62e-511.77e-49
speciesBifidobacterium_adolescentis0.3378.31e-512.45e-49
classGammaproteobacteria0.3261.26e-473.5e-46
genusEscherichia0.3191.98e-455.19e-44
familyBacteroidaceae-0.314.54e-431.07e-41
genusBacteroides-0.314.54e-431.07e-41
genusPantoea0.3051.19e-412.55e-40
speciesPantoea_unclassified0.3051.19e-412.55e-40
speciesEscherichia_coli0.3043.01e-416.18e-40
phylumProteobacteria0.2972.32e-394.56e-38
familyLactobacillaceae0.2931.91e-383.61e-37
genusLactobacillus0.2893.36e-376.1e-36
familyActinomycetaceae0.2821.6e-352.8e-34
speciesBifidobacterium_catenulatum0.2813.31e-355.58e-34
familyStreptococcaceae0.2781.32e-342.15e-33
genusActinomyces0.2781.44e-342.27e-33
genusStreptococcus0.2733.17e-334.83e-32
genusBlautia0.2562.31e-293.41e-28
speciesBifidobacterium_dentium0.2545.22e-297.47e-28
speciesBifidobacterium_bifidum0.2545.76e-298e-28
genusEnterococcus0.2531.37e-281.85e-27
familyEnterococcaceae0.2512.7e-283.54e-27
genusCollinsella0.2481.4e-271.79e-26
familyBacillales_noname0.2471.78e-272.15e-26
genusGemella0.2471.78e-272.15e-26
speciesBifidobacterium_pseudocatenulatum0.2449.9e-271.17e-25
genusSolobacterium0.2382.04e-252.29e-24
speciesSolobacterium_moorei0.2382.04e-252.29e-24
speciesEscherichia_unclassified0.2372.37e-252.6e-24
speciesCollinsella_aerofaciens0.2363.53e-253.79e-24
orderActinomycetales0.2356.75e-257.08e-24
genusAnaerostipes0.2357.57e-257.77e-24
orderBacillales0.2313.76e-243.78e-23
speciesStreptococcus_salivarius0.236.96e-246.84e-23
genusOdoribacter-0.237.53e-247.25e-23
speciesEubacterium_hallii0.2291.06e-231e-22
genusDorea0.2249.4e-238.7e-22
speciesRuminococcus_sp_5_1_39BFAA0.2213.56e-223.23e-21
familyPorphyromonadaceae-0.2214.16e-223.7e-21
speciesBacteroides_uniformis-0.225.63e-224.92e-21
familyRikenellaceae-0.226.36e-225.36e-21
genusAlistipes-0.226.36e-225.36e-21
speciesStreptococcus_sanguinis0.227.35e-226.09e-21
genusParabacteroides-0.2163.12e-212.54e-20
speciesOdoribacter_splanchnicus-0.2164.18e-213.34e-20
genusRuminococcus0.2122.18e-201.71e-19
genusEggerthella0.2062.17e-191.68e-18
speciesAlistipes_shahii-0.2036.7e-195.1e-18
speciesRuminococcus_obeum0.2037.34e-195.5e-18
speciesAnaerostipes_hadrus0.2011.85e-181.36e-17
genusKlebsiella0.1993.33e-182.42e-17
speciesBifidobacterium_breve0.1985.1e-183.65e-17
speciesStreptococcus_anginosus0.1986.34e-184.47e-17
speciesEggerthella_lenta0.1977.04e-184.89e-17
speciesEggerthella_unclassified0.1951.71e-171.17e-16
speciesBacteroides_xylanisolvens-0.1924.8e-173.24e-16
speciesStreptococcus_thermophilus0.1916.96e-174.63e-16
speciesLachnospiraceae_bacterium_5_1_63FAA0.191.02e-166.69e-16
genusCoprobacillus0.1892.02e-161.31e-15
speciesEnterococcus_faecium0.1882.17e-161.38e-15
speciesStreptococcus_mutans0.1882.41e-161.52e-15
genusOlsenella0.1873.13e-161.94e-15
genusPeptostreptococcus0.1873.2e-161.96e-15
speciesStreptococcus_gordonii0.1864.39e-162.66e-15
genusGordonibacter0.1865.23e-163.09e-15
speciesGordonibacter_pamelaeae0.1865.23e-163.09e-15
familyLeuconostocaceae0.1865.64e-163.29e-15
familyPeptostreptococcaceae0.1858.25e-164.75e-15
speciesDorea_longicatena0.1841.14e-156.48e-15
speciesKlebsiella_pneumoniae0.1841.16e-156.52e-15
speciesBacteroides_thetaiotaomicron-0.1812.76e-151.53e-14
speciesStreptococcus_vestibularis0.1787.94e-154.36e-14
speciesBacteroides_vulgatus-0.1771.35e-147.32e-14
speciesDorea_formicigenerans0.1761.75e-149.39e-14
speciesEnterococcus_faecalis0.1752.77e-141.47e-13
speciesLactobacillus_gasseri0.1743.7e-141.94e-13
classErysipelotrichia0.1718.67e-144.4e-13
orderErysipelotrichales0.1718.67e-144.4e-13
familyErysipelotrichaceae0.1718.67e-144.4e-13
speciesStreptococcus_mitis_oralis_pneumoniae0.1718.99e-144.51e-13
genusPeptostreptococcaceae_noname0.1691.66e-138.25e-13
speciesStreptococcus_parasanguinis0.1691.69e-138.31e-13
phylumFirmicutes0.1691.73e-138.42e-13
speciesCoprobacillus_unclassified0.1682.36e-131.14e-12
speciesAlistipes_putredinis-0.1657.27e-133.47e-12
speciesClostridium_bartlettii0.1649.48e-134.47e-12
speciesKlebsiella_oxytoca0.1641.06e-124.95e-12
speciesOlsenella_unclassified0.1641.08e-125e-12
speciesLactobacillus_mucosae0.1641.1e-125.04e-12
speciesClostridium_ramosum0.1631.21e-125.49e-12
genusErysipelotrichaceae_noname0.1621.83e-128.23e-12
speciesLactobacillus_rhamnosus0.1622.01e-128.95e-12
familyMicrococcaceae0.163.42e-121.51e-11
speciesEubacterium_eligens-0.163.57e-121.56e-11
genusRothia0.163.62e-121.57e-11
speciesRothia_mucilaginosa0.163.96e-121.7e-11
orderBurkholderiales-0.1594.13e-121.76e-11
genusWeissella0.1586.9e-122.91e-11
speciesBacteroides_ovatus-0.1561.1e-114.59e-11
familySutterellaceae-0.1551.52e-116.29e-11
speciesGemella_morbillorum0.1542.29e-119.4e-11
classBetaproteobacteria-0.1532.6e-111.06e-10
speciesBacteroides_cellulosilyticus-0.1533.26e-111.32e-10
speciesAlistipes_finegoldii-0.1523.51e-111.4e-10
familyClostridiales_Family_XI_Incertae_Sedis0.1523.96e-111.57e-10
speciesLactobacillus_amylovorus0.156.18e-112.43e-10
speciesErysipelotrichaceae_bacterium_2_2_44A0.1498.82e-113.44e-10
genusRoseburia-0.1462.21e-108.55e-10
speciesParabacteroides_merdae-0.1462.52e-109.67e-10
familyOscillospiraceae-0.1452.97e-101.12e-09
genusOscillibacter-0.1452.97e-101.12e-09
speciesRuminococcus_gnavus0.1435.57e-102.09e-09
speciesWeissella_confusa0.1427.29e-102.71e-09
speciesRuminococcus_torques0.1418.14e-103e-09
speciesPeptostreptococcus_stomatis0.1419.07e-103.32e-09
speciesErysipelotrichaceae_bacterium_21_30.1419.78e-103.55e-09
genusParvimonas0.1391.57e-095.66e-09
speciesStreptococcus_australis0.1391.61e-095.75e-09
speciesParvimonas_unclassified0.1391.62e-095.75e-09
speciesLactobacillus_delbrueckii0.1391.75e-096.16e-09
familyPrevotellaceae-0.1391.77e-096.19e-09
speciesRuminococcus_bromii0.1382.05e-097.11e-09
speciesLactobacillus_casei_paracasei0.1372.54e-098.75e-09
speciesLactobacillus_fermentum0.1363.18e-091.09e-08
speciesCoprococcus_comes0.1363.41e-091.16e-08
speciesLactococcus_garvieae0.1346.17e-092.08e-08
genusAdlercreutzia0.1346.33e-092.1e-08
speciesAdlercreutzia_equolifaciens0.1346.33e-092.1e-08
speciesErysipelotrichaceae_bacterium_6_1_450.1346.73e-092.22e-08
genusLactococcus0.1336.84e-092.24e-08
speciesOscillibacter_unclassified-0.1338.02e-092.61e-08
genusButyricimonas-0.1338.74e-092.81e-08
speciesButyricimonas_synergistica-0.1338.74e-092.81e-08
speciesEnterobacter_cloacae0.1338.81e-092.81e-08
familyLachnospiraceae0.1321.07e-083.39e-08
genusLeuconostoc0.1311.44e-084.53e-08
speciesRoseburia_inulinivorans-0.1292e-086.25e-08
speciesWeissella_cibaria0.1292.26e-087.02e-08
speciesCoprococcus_catus0.1273.73e-081.15e-07
familyRuminococcaceae0.1246.95e-082.13e-07
speciesBlautia_producta0.1247.48e-082.28e-07
speciesFusobacterium_nucleatum0.1238.62e-082.61e-07
genusEnterobacter0.1239.03e-082.71e-07
genusPrevotella-0.1239.63e-082.88e-07
speciesParabacteroides_goldsteinii-0.1231.04e-073.09e-07
speciesBacteroides_massiliensis-0.1221.27e-073.75e-07
classClostridia0.1211.62e-074.72e-07
orderClostridiales0.1211.62e-074.72e-07
speciesDialister_invisus0.122.14e-076.2e-07
speciesLachnospiraceae_bacterium_2_1_58FAA0.1192.35e-076.76e-07
speciesPrevotella_copri-0.1165.41e-071.54e-06
speciesRoseburia_hominis-0.1165.41e-071.54e-06
speciesBifidobacterium_animalis0.1155.76e-071.63e-06
speciesKlebsiella_sp_MS_92_30.1155.8e-071.63e-06
speciesBacteroides_dorei-0.1155.98e-071.67e-06
genusCitrobacter0.1148.2e-072.28e-06
speciesLactobacillus_plantarum0.1138.84e-072.44e-06
speciesCitrobacter_freundii0.1131.03e-062.83e-06
genusDialister0.1121.12e-063.06e-06
speciesBacteroides_nordii-0.1121.27e-063.45e-06
genusClostridium0.1111.44e-063.88e-06
speciesEubacterium_limosum0.1111.64e-064.4e-06
speciesStreptococcus_lutetiensis0.111.88e-065.01e-06
speciesCitrobacter_unclassified0.1092.12e-065.62e-06
speciesLactobacillus_vaginalis0.1092.21e-065.83e-06
speciesClostridium_perfringens0.1092.23e-065.85e-06
familyClostridiaceae0.1092.33e-066.08e-06
genusLachnospiraceae_noname0.1082.66e-066.9e-06
speciesLactobacillus_salivarius0.1082.74e-067.07e-06
speciesBacteroides_intestinalis-0.1082.84e-067.29e-06
speciesBacteroides_caccae-0.1064.69e-061.2e-05
genusCoprococcus0.1055.28e-061.34e-05
speciesLactococcus_lactis0.1046.24e-061.58e-05
speciesAlistipes_indistinctus-0.1046.44e-061.62e-05
genusParasutterella-0.1038.43e-062.09e-05
speciesParasutterella_excrementihominis-0.1038.43e-062.09e-05
speciesLactobacillus_crispatus0.1029.61e-062.37e-05
genusMegasphaera0.1021.08e-052.66e-05
speciesPrevotella_stercorea-0.11.54e-053.77e-05
speciesBlautia_hydrogenotrophica0.0972.75e-056.69e-05
speciesClostridium_hathewayi0.0953.59e-058.69e-05
speciesLachnospiraceae_bacterium_1_4_56FAA0.0953.91e-059.42e-05
speciesAlistipes_senegalensis-0.0953.93e-059.42e-05
orderPseudomonadales0.0944.47e-050.000107
genusPropionibacterium0.0935.25e-050.000125
speciesStreptococcus_infantarius0.0935.74e-050.000135
speciesMegasphaera_micronuciformis0.0926.25e-050.000147
speciesParabacteroides_johnsonii-0.0927.21e-050.000168
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0918.82e-050.000205
classDeltaproteobacteria-0.099.54e-050.000219
orderDesulfovibrionales-0.099.54e-050.000219
familyDesulfovibrionaceae-0.099.54e-050.000219
speciesBacteroides_faecis-0.090.0001010.00023
genusSutterellaceae_unclassified-0.090.0001030.000233
speciesLachnospiraceae_bacterium_5_1_57FAA0.090.0001030.000233
speciesRoseburia_intestinalis-0.0880.0001290.00029
speciesOscillibacter_sp_KLE_1728-0.0880.0001420.000318
genusMorganella0.0870.0001560.000346
speciesMorganella_morganii0.0870.0001560.000346
speciesBacteroides_stercoris-0.0860.0001820.000401
speciesAlistipes_onderdonkii-0.0860.0001880.000413
familyVeillonellaceae0.0860.0001890.000413
speciesPropionibacterium_freudenreichii0.0850.0002190.000476
speciesLactobacillus_sanfranciscensis0.0840.0002780.000602
genusLambdalikevirus0.0830.0003490.000752
speciesVeillonella_parvula0.0820.0003730.0008
speciesPeptostreptococcus_anaerobius0.0820.0003820.000816
speciesBilophila_unclassified-0.0820.0003840.000816
speciesCoprobacillus_sp_D60.0810.0004630.00098
genusBilophila-0.0810.0004910.00103
speciesAnaerostipes_unclassified0.080.0004930.00103
speciesClostridium_clostridioforme0.080.000570.00119
genusAcidaminococcus0.0790.0006090.00127
familyBurkholderiales_noname-0.0790.0006390.00132
speciesParaprevotella_xylaniphila-0.0790.0006630.00137
speciesEggerthella_sp_1_3_56FAA0.0780.000690.00142
genusPeptoniphilus0.0780.0007870.00161
speciesCoriobacteriaceae_bacterium_phI0.0770.0007970.00162
genusProteus0.0770.0009020.00183
genusBurkholderiales_noname-0.0770.0009130.00183
speciesBurkholderiales_bacterium_1_1_47-0.0770.0009130.00183
speciesTuricibacter_sanguinis0.0770.0009160.00183
speciesSubdoligranulum_sp_4_3_54A2FAA0.0750.001090.00217
genusCoriobacteriaceae_noname0.0750.00120.00238
speciesBacteroides_salyersiae-0.0730.001590.00314
speciesEubacterium_siraeum-0.0730.00160.00315
speciesRuminococcus_sp_JC3040.0730.001620.00317
speciesBacteroides_finegoldii-0.0720.001750.00341
speciesBacteroides_oleiciplenus-0.0720.001890.00366
phylumViruses_noname0.0720.00190.00366
classViruses_noname0.0720.00190.00366
phylumSynergistetes0.0690.002710.00514
classSynergistia0.0690.002710.00514
orderSynergistales0.0690.002710.00514
familySynergistaceae0.0690.002710.00514
speciesMegasphaera_elsdenii0.0690.002910.00549
genusSiphoviridae_noname0.0690.003020.00568
speciesFusobacterium_mortiferum-0.0680.003090.00579
speciesKlebsiella_unclassified0.0680.003130.00583
speciesEubacterium_cylindroides0.0680.003140.00583
speciesLactobacillus_acidophilus0.0680.003210.00594
speciesDorea_unclassified-0.0680.003350.00618
orderViruses_noname0.0670.003610.00663
speciesEubacterium_ramulus0.0670.00390.00713
speciesLeuconostoc_lactis0.0660.004210.00767
speciesStreptococcus_phage_Sfi210.0660.004460.0081
genusTuricibacter0.0650.005070.00917
speciesAnaerotruncus_unclassified-0.0640.005290.00953
speciesParabacteroides_sp_D13-0.0640.00550.00987
genusParaprevotella-0.0640.005730.0102
speciesMegasphaera_unclassified0.0640.005810.0103
genusVeillonella0.0630.006260.011
genusCampylobacter0.0630.006290.011
genusPyramidobacter0.0630.00630.011
speciesPyramidobacter_piscolens0.0630.00630.011
speciesErysipelotrichaceae_bacterium_3_1_530.0630.006310.011
speciesHaemophilus_parainfluenzae-0.0630.006710.0117
speciesMegamonas_rupellensis-0.0620.006950.0121
speciesFusobacterium_ulcerans0.0620.007190.0124
speciesParaprevotella_unclassified-0.0620.007440.0128
speciesParaprevotella_clara-0.0620.007750.0133
familyCampylobacteraceae0.0620.007760.0133
genusHaemophilus-0.0610.007810.0133
speciesProteus_mirabilis0.0610.00860.0146
orderPasteurellales-0.060.009640.0163
familyPasteurellaceae-0.060.009640.0163
speciesParabacteroides_distasonis-0.060.009830.0165
genusPorphyromonas0.060.009860.0165
speciesLactobacillus_oris0.0590.01070.0178
speciesAcidaminococcus_fermentans0.0580.01180.0196
classEpsilonproteobacteria0.0580.01240.0205
orderCampylobacterales0.0580.01240.0205
genusCoprobacter-0.0570.01360.0223
speciesCoprobacter_fastidiosus-0.0570.01360.0223
speciesEubacterium_dolichum0.0570.01370.0224
speciesMitsuokella_unclassified0.0570.01450.0236
speciesBilophila_wadsworthia-0.0560.01480.024
genusDesulfovibrio-0.0550.01680.0272
genusMitsuokella0.0540.01920.0308
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0540.01920.0308
genusButyricicoccus0.0540.020.0318
genusButyrivibrio-0.0540.020.0318
speciesButyricicoccus_pullicaecorum0.0540.020.0318
familyMyoviridae0.0530.0210.0333
speciesPorphyromonas_uenonis0.0530.02130.0336
speciesTuricibacter_unclassified0.0520.02340.0368
speciesEnterobacter_aerogenes0.0520.02360.037
speciesHaemophilus_paraphrohaemolyticus0.0520.02380.0372
familyPropionibacteriaceae0.0520.0250.0389
speciesVeillonella_atypica0.0510.0260.0404
speciesAnaerotruncus_colihominis0.0510.02610.0404
speciesBacteroides_clarus-0.0510.02770.0426
speciesClostridium_bolteae0.0510.02770.0426
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0510.02780.0426
speciesOdoribacter_unclassified-0.050.03010.046
speciesClostridium_leptum0.050.03120.0475
speciesLachnospiraceae_bacterium_6_1_63FAA0.050.03160.0478
speciesAcidaminococcus_intestini0.050.03160.0478
speciesCoprobacillus_sp_29_10.050.0320.0483
genusPhascolarctobacterium-0.0490.03240.0484
speciesBacteroides_fluxus-0.0490.03240.0484
speciesPhascolarctobacterium_succinatutens-0.0490.03240.0484
speciesRuminococcus_lactaris-0.0490.03330.0496
speciesAcidaminococcus_unclassified0.0480.03750.0557
speciesRoseburia_unclassified0.0480.03860.0571
familyStaphylococcaceae0.0480.03910.0577
genusClostridiaceae_noname-0.0480.03940.0578
speciesClostridiaceae_bacterium_JC118-0.0480.03940.0578
genusAggregatibacter0.0470.04030.0589
genusStaphylococcus0.0470.04310.0628
speciesLactococcus_phage_936_sensu_lato-0.0470.04340.063
speciesCampylobacter_concisus0.0460.04690.0679
speciesPorphyromonas_asaccharolytica0.0460.04720.0679
genusOxalobacter-0.0460.04730.0679
speciesOxalobacter_formigenes-0.0460.04730.0679
speciesBacteroides_pectinophilus-0.0460.04750.0679
speciesMegamonas_hypermegale-0.0440.05510.0786
genusFaecalibacterium-0.0440.05590.0792
speciesFaecalibacterium_prausnitzii-0.0440.05590.0792
speciesDesulfovibrio_piger-0.0440.0570.0805
genusBarnesiella-0.0440.05730.0805
speciesBarnesiella_intestinihominis-0.0440.05730.0805
genusMethanobrevibacter0.0440.0580.081
speciesClostridium_nexile0.0440.0580.081
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0440.05960.083
speciesMegamonas_funiformis-0.0440.060.0833
speciesC2likevirus_unclassified-0.0430.06240.0864
speciesEnterobacteria_phage_HK5440.0430.06270.0865
familyOxalobacteraceae-0.0430.06520.0897
speciesAlistipes_sp_AP110.0420.06660.0914
speciesAggregatibacter_segnis0.0420.06690.0915
orderCaudovirales0.0420.07220.0985
speciesHaemophilus_sputorum0.0410.0740.101
classNegativicutes0.0410.07450.101
orderSelenomonadales0.0410.07450.101
genusAcidaminococcaceae_unclassified0.0410.07510.101
speciesClostridium_asparagiforme-0.0410.07780.105
familyFusobacteriaceae0.040.08220.11
speciesPeptostreptococcaceae_noname_unclassified0.040.0840.112
speciesAlistipes_sp_HGB5-0.040.0850.113
genusFusobacterium0.040.08550.114
speciesButyrivibrio_crossotus-0.040.08570.114
speciesDesulfovibrio_desulfuricans-0.040.08670.115
phylumEuryarchaeota0.0390.09290.122
genusC2likevirus-0.0380.09710.128
speciesOscillibacter_sp_KLE_1745-0.0380.09980.131
speciesCollinsella_tanakaei-0.0380.1010.132
speciesOdoribacter_laneus0.0370.1090.142
classMethanobacteria0.0360.1180.153
orderMethanobacteriales0.0360.1180.153
familyMethanobacteriaceae0.0360.1180.153
phylumFusobacteria0.0360.1190.153
classFusobacteriia0.0360.1190.153
orderFusobacteriales0.0360.1190.153
speciesMethanobrevibacter_smithii0.0360.1240.159
speciesVeillonella_unclassified0.0350.1320.168
speciesHoldemania_unclassified-0.0350.1330.169
speciesRuminococcus_callidus-0.0350.1360.173
speciesVeillonella_dispar0.0340.1380.175
familyBacteroidales_noname-0.0340.1410.177
genusBacteroidales_noname-0.0340.1410.177
speciesBacteroidales_bacterium_ph8-0.0340.1410.177
speciesCoprococcus_eutactus-0.0340.1420.178
speciesMegamonas_unclassified-0.0340.1440.18
genusMegamonas-0.0340.1450.181
orderAeromonadales0.0330.1550.193
speciesPrevotella_bivia0.0320.1660.206
speciesButyrivibrio_unclassified-0.030.1980.245
speciesBacteroides_plebeius-0.030.2010.248
speciesPrevotella_buccae0.0290.2050.252
genusMyoviridae_noname0.0290.2130.261
genusSlackia0.0290.2160.264
speciesMethanobrevibacter_unclassified0.0280.2210.27
speciesClostridium_symbiosum0.0280.2220.27
speciesLachnospiraceae_bacterium_1_1_57FAA0.0280.2290.278
speciesClostridiales_bacterium_1_7_47FAA0.0270.2350.284
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0270.2360.285
speciesAlistipes_unclassified0.0270.2520.303
genusRuminococcaceae_noname-0.0260.260.311
speciesRuminococcaceae_bacterium_D16-0.0260.260.311
speciesBacteroides_fragilis0.0260.2630.314
genusSubdoligranulum0.0260.2640.314
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0260.2640.314
speciesBacteroides_sp_1_1_6-0.0260.2690.319
speciesLactobacillus_ruminis0.0250.280.331
speciesLactobacillus_reuteri0.0250.2850.336
speciesLactococcus_phage_P6800.0250.2870.338
speciesBacteroides_sp_2_1_22-0.0240.3050.358
speciesParabacteroides_unclassified-0.0240.3070.36
genusTunalikevirus0.0230.3130.366
familySiphoviridae0.0230.3150.367
speciesClostridium_spiroforme0.0230.3210.373
speciesCollinsella_unclassified0.0230.3260.377
genusAnaerotruncus-0.0230.3270.377
speciesBacteroides_coprocola-0.0230.3270.377
speciesLactococcus_phage_bIL670.0230.3290.379
genusEubacterium-0.0220.3430.394
familyEubacteriaceae-0.0220.3510.402
speciesSutterella_parvirubra-0.0210.3540.405
speciesStreptococcus_pasteurianus0.0210.3550.405
speciesLactococcus_phage_jm2-0.0210.3590.408
familyViruses_noname0.020.3780.428
genusViruses_noname0.020.3780.428
speciesSubdoligranulum_unclassified0.020.3840.434
genusActinobacillus0.0190.4120.459
speciesActinobacillus_unclassified0.0190.4120.459
phylumVerrucomicrobia0.0190.4140.459
classVerrucomicrobiae0.0190.4140.459
orderVerrucomicrobiales0.0190.4140.459
familyVerrucomicrobiaceae0.0190.4140.459
genusAkkermansia0.0190.4140.459
speciesAkkermansia_muciniphila0.0190.4140.459
speciesBacteroides_barnesiae-0.0180.4250.47
genusMethanosphaera0.0180.4350.479
speciesMethanosphaera_stadtmanae0.0180.4350.479
genusCatenibacterium-0.0180.4370.479
speciesCatenibacterium_mitsuokai-0.0180.4370.479
speciesParabacteroides_sp_20_3-0.0170.4710.512
speciesClostridium_sp_KLE_17550.0170.4710.512
speciesLachnospiraceae_bacterium_2_1_46FAA0.0170.4710.512
speciesBifidobacterium_angulatum0.0160.4780.519
speciesKlebsiella_phage_KP360.0160.4850.525
speciesBacteroides_eggerthii-0.0160.4920.531
genusSutterella-0.0150.5070.546
familyPodoviridae0.0150.5080.546
speciesClostridium_citroniae0.0150.5120.549
familyAcidaminococcaceae0.0140.5430.581
speciesHoldemania_filiformis-0.0140.5470.584
speciesMitsuokella_multacida-0.0140.5550.591
genusHoldemania-0.0140.5560.591
speciesCoprococcus_sp_ART55_1-0.0140.560.594
speciesHoldemania_sp_AP20.0130.5660.599
speciesEubacterium_biforme0.0130.5790.611
speciesCollinsella_intestinalis0.0130.5870.618
speciesEubacterium_rectale-0.0120.6110.642
speciesLactococcus_phage_phi7-0.0110.6230.653
familyClostridiales_noname-0.0090.6990.732
speciesSutterella_wadsworthensis-0.0090.7050.736
genusPseudoflavonifractor-0.0080.7180.746
speciesPseudoflavonifractor_capillosus-0.0080.7180.746
speciesBacteroides_salanitronis-0.0080.7210.748
speciesDialister_succinatiphilus0.0070.7520.778
speciesFusobacterium_varium0.0070.7760.801
speciesBacteroides_sp_4_3_47FAA0.0060.7930.815
speciesRuminococcus_champanellensis0.0060.7930.815
speciesSlackia_piriformis-0.0050.8210.842
speciesBacteroides_coprophilus-0.0050.8360.856
genusClostridiales_noname-0.0040.8690.888
familySuccinivibrionaceae-0.0040.8710.888
speciesEubacterium_ventriosum0.0040.8730.888
genusFlavonifractor0.0030.90.912
speciesFlavonifractor_plautii0.0030.90.912
speciesBacteroides_sp_3_1_19-0.0030.9020.912
genusSuccinatimonas-0.0020.9360.942
speciesSuccinatimonas_hippei-0.0020.9360.942
speciesClostridium_sp_ATCC_BAA_4420.0020.940.944
speciesClostridium_sp_L2_500.0010.970.972
speciesEubacterium_sp_3_1_310.00.9990.999
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.05368415216620.01716799315011.83489073335e-05392113.1714
Type II diabetesChina1831850.08352604865740.04058673156260.0177801239653458515.1525
Crohns diseaseSpain17660.07962072701790.03818991649080.022985151503965732.1097
Type II diabetesDenmark752770.03048879984490.02641200204280.0565605829205757224.8205
Type II diabetesSweden53920.05068401634990.0554494255080.3828184939381251442.3772
Ulcerative colitisSpain78660.03657963006690.03818991649080.4409507071761773658.5076
ObesityDenmark1691230.02742410471320.0326743937180.4524071157821824159.9816
Colorectal cancerAustria64350.1818553856530.1811585560330.453120299651634155.2883
Rheumatoid arthritisChina127980.05388920341850.04834240688430.8874863774092738891.3329
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382