MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-06-25 19:21:27 PST
Job id & description: 2028, isca
Query type: protein
Count queries & homologs: 1, 127
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
VWQ04853.17238591CompleteK13628COG0316ProteobacteriaEscherichia100.098.17100.0
VWQ04853.17272595CompleteK13628COG0316ProteobacteriaCitrobacter100.0100.097.2
VWQ04853.17290496CompleteK13628COG0316ProteobacteriaEnterobacter100.0100.094.39
VWQ04853.17275000CompleteK13628COG0316ProteobacteriaKlebsiella100.0100.094.39
VWQ04853.17268217CompleteK13628COG0316ProteobacteriaKlebsiella100.0100.094.39
VWQ04853.17238543CompleteK13628COG0316ProteobacteriaEnterobacter100.098.1793.46
VWQ04853.17296513CompleteK13628COG0316Proteobacteriaunknown100.0100.080.37
VWQ04853.17288449CompleteK13628COG0316ProteobacteriaProvidencia100.0100.078.5
VWQ04853.17285423CompleteK13628COG0316Proteobacteriaunknown100.0100.075.7
VWQ04853.17285398CompleteK13628COG0316ProteobacteriaProteus100.0100.077.57
VWQ04853.17239006CompleteK13628COG0316ProteobacteriaAggregatibacter100.098.1775.7
VWQ04853.17291651CompleteK13628COG0316ProteobacteriaAggregatibacter100.0100.075.7
VWQ04853.16861062CompleteK13628COG0316ProteobacteriaHaemophilus100.087.773.83
VWQ04853.17287365CompleteK13628COG0316ProteobacteriaHaemophilus100.0100.071.96
VWQ04853.17290078CompleteK13628COG0316Proteobacteriaunknown100.0100.067.29
VWQ04853.17284390CompleteK13628COG0316unknownunknown100.0100.066.36
VWQ04853.17275312CompleteK13628COG0316unknownunknown100.0100.066.36
VWQ04853.17263629Lack 5'-endK13628COG0316Proteobacteriaunknown100.099.0765.42
VWQ04853.17296609CompleteK13628COG0316ProteobacteriaOxalobacter100.0100.066.36
VWQ04853.17280217CompleteK13628COG0316Proteobacteriaunknown100.0100.065.42
VWQ04853.17296219CompleteK13628COG0316Proteobacteriaunknown100.0100.065.42
VWQ04853.17268093CompleteK13628COG0316unknownunknown100.0100.063.55
VWQ04853.16895594Lack 5'-endK13628COG0316unknownunknown100.089.1765.42
VWQ04853.17286189CompleteK13628COG0316ProteobacteriaAchromobacter100.0100.067.29
VWQ04853.17270572CompleteK13628COG0316Proteobacteriaunknown100.0100.066.36
VWQ04853.17269331CompleteK13628COG0316ProteobacteriaSutterella100.0100.065.42
VWQ04853.17268723CompleteK13628COG0316unknownunknown100.0100.065.42
VWQ04853.17291098CompleteK13628COG0316Proteobacteriaunknown100.0100.074.77
VWQ04853.17280724CompleteK13628COG0316unknownunknown100.0100.065.42
VWQ04853.17280791CompleteK13628COG0316unknownunknown100.0100.065.42
VWQ04853.17292233CompleteK13628COG0316unknownunknown100.0100.065.42
VWQ04853.17274149CompleteK13628COG0316unknownunknown100.0100.065.42
VWQ04853.17268353CompleteK13628COG0316unknownunknown100.0100.062.62
VWQ04853.17296610CompleteK13628COG0316ProteobacteriaOxalobacter100.0100.065.42
VWQ04853.17023645Lack 5'-endK13628COG0316unknownunknown100.092.2468.22
VWQ04853.17292067CompleteK13628COG0316unknownunknown100.0100.065.42
VWQ04853.17278886Lack 5'-endK13628COG0316unknownunknown100.0100.065.42
VWQ04853.17283777CompleteK13628COG0316Proteobacteriaunknown100.0100.060.75
VWQ04853.17279972CompleteK13628COG0316Proteobacteriaunknown100.0100.059.81
VWQ04853.17291871CompleteK13628COG0316unknownunknown100.0100.063.55
VWQ04853.17292391CompleteK13628COG0316ProteobacteriaSutterella100.0100.065.42
VWQ04853.17273221CompleteK13628COG0316unknownunknown100.0100.065.42
VWQ04853.17287068CompleteK13628COG0316unknownunknown100.0100.063.55
VWQ04853.17293628CompleteK13628COG0316Proteobacteriaunknown100.0100.062.62
VWQ04853.17048818Lack 5'-endK13628COG0316unknownunknown98.1391.366.67
VWQ04853.16721769Lack 5'-endK13628COG0316unknownunknown100.084.2560.75
VWQ04853.17275283CompleteK13628COG0316unknownunknown100.0100.063.55
VWQ04853.17301829CompleteK13628COG0316unknownunknown98.1399.0665.71
VWQ04853.17271530CompleteK13628COG0316Proteobacteriaunknown100.0100.062.62
VWQ04853.17286298CompleteK13628COG0316unknownunknown100.0100.061.68
VWQ04853.17291386CompleteK13628COG0316unknownunknown100.0100.061.68
VWQ04853.17399099CompleteK13628COG0316unknownunknown96.26100.062.14
VWQ04853.16760256CompleteK05997COG0316ProteobacteriaKlebsiella98.1384.049.52
VWQ04853.16770138CompleteK05997COG0316ProteobacteriaKlebsiella98.1384.048.57
VWQ04853.16776942CompleteK05997COG0316ProteobacteriaEnterobacter98.1384.048.57
VWQ04853.16866927CompleteK05997COG0316ProteobacteriaEnterobacter98.1386.0748.57
VWQ04853.16866795CompleteK05997COG0316ProteobacteriaEnterobacter98.1386.0748.57
VWQ04853.16762362CompleteK05997COG0316ProteobacteriaKlebsiella98.1384.047.62
VWQ04853.16862347CompleteK05997COG0316ProteobacteriaEnterobacter98.1386.0748.57
VWQ04853.16862664CompleteK05997COG0316ProteobacteriaEnterobacter98.1386.0748.57
VWQ04853.16862885CompleteK05997COG0316ProteobacteriaEnterobacter98.1386.0748.57
VWQ04853.18316690Lack 5'-endK13628COG0316ProteobacteriaHaemophilus70.09100.073.33
VWQ04853.16858646CompleteK05997COG0316ProteobacteriaEnterobacter98.1386.0748.57
VWQ04853.16782530CompleteK05997COG0316ProteobacteriaKlebsiella98.1384.047.62
VWQ04853.16761681CompleteK05997COG0316ProteobacteriaKlebsiella98.1384.047.62
VWQ04853.16867030CompleteK05997COG0316ProteobacteriaCitrobacter98.1386.0746.67
VWQ04853.16866835CompleteK05997COG0316ProteobacteriaCitrobacter98.1386.0746.67
VWQ04853.16839054CompleteK05997COG0316ProteobacteriaEscherichia98.1386.0747.62
VWQ04853.16866905CompleteK05997COG0316ProteobacteriaEscherichia98.1386.0746.67
VWQ04853.16859218CompleteK05997COG0316ProteobacteriaProvidencia98.1386.0743.81
VWQ04853.16856130CompleteK05997COG0316ProteobacteriaProteus98.1386.0743.81
VWQ04853.16846384CompleteK05997COG0316ProteobacteriaProteus98.1386.0742.86
VWQ04853.18132743Lack 3'-endK13628COG0316unknownunknown75.7100.056.79
VWQ04853.16646785CompleteK13628COG0316ActinobacteriaActinomyces97.286.1538.39
VWQ04853.16601013CompleteK13628COG0316ProteobacteriaSutterella98.1380.9240.19
VWQ04853.16782560CompleteK13628COG0316ProteobacteriaEscherichia100.086.440.0
VWQ04853.17093452CompleteK13628COG0316ProteobacteriaCitrobacter100.094.7439.09
VWQ04853.17085940CompleteK13628NOG294307;COG0316ProteobacteriaProvidencia100.094.7440.0
VWQ04853.17082960CompleteK13628COG0316Proteobacteriaunknown100.094.7440.91
VWQ04853.17070375CompleteK13628NOG294307;COG0316ProteobacteriaCitrobacter100.094.7439.09
VWQ04853.16587432Lack 5'-endK13628COG0316ProteobacteriaKlebsiella100.081.8240.0
VWQ04853.17087305CompleteK13628COG0316ProteobacteriaEnterobacter100.094.7439.09
VWQ04853.17087826CompleteK13628COG0316ProteobacteriaEnterobacter100.094.7440.0
VWQ04853.17072404CompleteK13628COG0316ProteobacteriaKlebsiella100.094.7440.0
VWQ04853.17090449CompleteK13628COG0316ProteobacteriaEnterobacter100.094.7439.09
VWQ04853.17093531CompleteK13628COG0316ProteobacteriaEnterobacter100.094.7439.09
VWQ04853.17087160CompleteK13628COG0316ProteobacteriaKlebsiella100.094.7440.0
VWQ04853.17093651CompleteK13628COG0316Proteobacteriaunknown100.094.7439.09
VWQ04853.17082927CompleteK13628COG0316ProteobacteriaProteus100.094.7439.09
VWQ04853.17087709CompleteK13628COG0316ProteobacteriaEnterobacter100.094.7439.09
VWQ04853.16649996CompleteK13628COG0316unknownunknown98.1382.1735.85
VWQ04853.16767392CompleteK13628COG0316unknownunknown98.1384.834.91
VWQ04853.17117296CompleteK13628COG0316ProteobacteriaAggregatibacter100.095.5837.27
VWQ04853.16545037CompleteK13628COG0316unknownunknown98.1379.735.85
VWQ04853.16267040CompleteK13628COG0316unknownunknown98.1373.6136.79
VWQ04853.16719275CompleteK13628COG0316Proteobacteriaunknown98.1383.4634.91
VWQ04853.16888407CompleteK13628COG0316ProteobacteriaDelftia98.1387.635.85
VWQ04853.17044029CompleteK13628COG0316ProteobacteriaHaemophilus98.1392.1737.96
VWQ04853.17045651CompleteK13628COG0316ProteobacteriaHaemophilus98.1392.1737.96
VWQ04853.17060174CompleteK13628COG0316ProteobacteriaHaemophilus98.1392.1737.96
VWQ04853.16778788CompleteK13628COG0316unknownunknown98.1384.835.85
VWQ04853.16757291CompleteK13628COG0316Proteobacteriaunknown98.1384.835.85
VWQ04853.16685017CompleteK13628COG0316unknownunknown98.1382.8133.96
VWQ04853.17034301CompleteK13628COG0316ProteobacteriaOxalobacter96.2689.6638.1
VWQ04853.16763250CompleteK13628COG0316unknownunknown98.1384.833.02
VWQ04853.16756077CompleteK13628COG0316unknownunknown98.1384.833.02
VWQ04853.16843030CompleteK13628COG0316unknownunknown96.2685.2534.62
VWQ04853.16788826CompleteK13628COG0316unknownunknown98.1385.4833.02
VWQ04853.16795886CompleteK13628COG0316unknownunknown98.1385.4833.02
VWQ04853.16973288CompleteK13628COG0316unknownunknown98.1389.8333.96
VWQ04853.17079986CompleteK13628COG0316unknownunknown98.1392.9837.96
VWQ04853.16976719CompleteK13628COG0316unknownunknown98.1389.8333.02
VWQ04853.16873987CompleteK13628COG0316unknownunknown98.1387.635.85
VWQ04853.16965267CompleteK13628COG0316unknownunknown98.1389.8333.02
VWQ04853.16963263CompleteK13628COG0316unknownunknown98.1389.8333.02
VWQ04853.16755283CompleteK13628COG0316unknownunknown98.1384.833.02
VWQ04853.16872165CompleteK13628COG0316unknownunknown98.1387.634.91
VWQ04853.16755472CompleteK13628COG0316unknownunknown98.1384.833.02
VWQ04853.16811554CompleteK13628COG0316unknownunknown98.1386.1833.02
VWQ04853.16491474Lack 5'-endK13628COG0316unknownunknown98.1378.5233.96
VWQ04853.16869327CompleteK13628COG0316unknownunknown98.1387.634.91
VWQ04853.17037678CompleteK13628COG0316ProteobacteriaOxalobacter96.2689.6634.29
VWQ04853.16671492Lack 5'-endK13628COG0316Proteobacteriaunknown98.1382.1732.08
VWQ04853.16826708CompleteK13628COG0316Proteobacteriaunknown98.1386.1832.08
VWQ04853.16815721CompleteK13628COG0316Proteobacteriaunknown98.1386.1832.08
VWQ04853.16826812CompleteK13628COG0316Proteobacteriaunknown98.1386.1832.08
VWQ04853.17822062Lack 3'-endK13628COG0316unknownunknown71.9686.6732.05
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumProteobacteria0.8170.00.0
classGammaproteobacteria0.7262.59e-3066.11e-304
orderEnterobacteriales0.6841.34e-2581.58e-256
familyEnterobacteriaceae0.6841.34e-2581.58e-256
genusEscherichia0.6156.46e-1956.1e-193
speciesEscherichia_coli0.5941.75e-1781.38e-176
genusKlebsiella0.51.33e-1188.97e-117
speciesKlebsiella_pneumoniae0.4967.76e-1174.58e-115
genusPantoea0.4399.6e-894.53e-87
speciesPantoea_unclassified0.4399.6e-894.53e-87
familyRuminococcaceae-0.394.13e-691.77e-67
speciesEscherichia_unclassified0.394.5e-691.77e-67
speciesSubdoligranulum_unclassified-0.3891.7e-686.17e-67
genusSubdoligranulum-0.3846.18e-672.08e-65
classClostridia-0.382.65e-657.82e-64
orderClostridiales-0.382.65e-657.82e-64
genusEnterobacter0.3482.74e-547.61e-53
phylumFusobacteria0.3431.03e-522.43e-51
classFusobacteriia0.3431.03e-522.43e-51
orderFusobacteriales0.3431.03e-522.43e-51
familyFusobacteriaceae0.3431.24e-522.77e-51
phylumFirmicutes-0.3431.29e-522.77e-51
speciesEnterobacter_cloacae0.3421.76e-523.61e-51
genusFusobacterium0.349.31e-521.83e-50
genusCoprococcus-0.341.1e-512.08e-50
speciesEubacterium_hallii-0.3244.31e-477.82e-46
speciesCoprococcus_catus-0.3215.41e-469.46e-45
speciesClostridium_leptum-0.3192.24e-453.78e-44
genusDorea-0.3143.31e-445.39e-43
speciesRuminococcus_obeum-0.3121.65e-432.6e-42
speciesRuminococcus_gnavus0.3051.54e-412.34e-40
speciesEubacterium_siraeum-0.2997.09e-401.05e-38
orderCoriobacteriales-0.2981.07e-391.49e-38
familyCoriobacteriaceae-0.2981.07e-391.49e-38
speciesMegasphaera_micronuciformis0.2981.53e-392.06e-38
speciesDorea_longicatena-0.2964.07e-395.34e-38
speciesCoprococcus_comes-0.2917.07e-389.02e-37
genusRuminococcus-0.2845.14e-366.38e-35
speciesClostridium_nexile0.2831e-351.21e-34
speciesEubacterium_ramulus-0.285.12e-356.04e-34
speciesAnaerotruncus_unclassified-0.2732.35e-332.71e-32
speciesBifidobacterium_adolescentis-0.2683.23e-323.63e-31
speciesAnaerostipes_hadrus-0.2669.85e-321.08e-30
phylumVerrucomicrobia-0.2651.61e-311.55e-30
classVerrucomicrobiae-0.2651.61e-311.55e-30
orderVerrucomicrobiales-0.2651.61e-311.55e-30
familyVerrucomicrobiaceae-0.2651.61e-311.55e-30
genusAkkermansia-0.2651.61e-311.55e-30
speciesAkkermansia_muciniphila-0.2651.61e-311.55e-30
speciesDorea_formicigenerans-0.2643.15e-312.97e-30
genusCollinsella-0.2562.72e-292.52e-28
phylumActinobacteria-0.2553.1e-292.76e-28
classActinobacteria-0.2553.1e-292.76e-28
speciesCollinsella_aerofaciens-0.2553.5e-293.06e-28
genusCitrobacter0.2545.74e-294.93e-28
speciesRuminococcus_sp_5_1_39BFAA-0.2548.24e-296.95e-28
familyEubacteriaceae-0.2512.85e-282.36e-27
genusEubacterium-0.2513.02e-282.46e-27
speciesCitrobacter_unclassified0.254.77e-283.82e-27
speciesClostridium_bolteae0.2472.55e-272.01e-26
genusAdlercreutzia-0.2462.78e-272.12e-26
speciesAdlercreutzia_equolifaciens-0.2462.78e-272.12e-26
speciesCitrobacter_freundii0.2463.24e-272.43e-26
speciesClostridium_perfringens0.2414.58e-263.38e-25
speciesBacteroides_fragilis0.2414.73e-263.43e-25
genusVeillonella0.248.05e-265.76e-25
genusMegasphaera0.2391.12e-257.89e-25
speciesVeillonella_parvula0.2391.17e-258.12e-25
speciesKlebsiella_oxytoca0.2381.62e-251.11e-24
speciesMethanobrevibacter_smithii-0.2365.43e-253.66e-24
speciesVeillonella_dispar0.2331.88e-241.25e-23
classMethanobacteria-0.2332.07e-241.32e-23
orderMethanobacteriales-0.2332.07e-241.32e-23
familyMethanobacteriaceae-0.2332.07e-241.32e-23
genusMethanobrevibacter-0.2323.35e-242.11e-23
speciesFusobacterium_mortiferum0.2315.41e-243.36e-23
familyBacteroidaceae0.2315.58e-243.38e-23
genusBacteroides0.2315.58e-243.38e-23
genusHaemophilus0.2281.49e-238.9e-23
speciesHaemophilus_parainfluenzae0.2281.67e-239.85e-23
orderPasteurellales0.2282.15e-231.24e-22
familyPasteurellaceae0.2282.15e-231.24e-22
phylumEuryarchaeota-0.2263.75e-232.13e-22
familyLachnospiraceae-0.2248.64e-234.85e-22
classBetaproteobacteria0.2241.03e-225.72e-22
genusButyrivibrio-0.2232.03e-221.11e-21
genusPseudoflavonifractor-0.227.52e-224.03e-21
speciesPseudoflavonifractor_capillosus-0.227.52e-224.03e-21
speciesRoseburia_hominis-0.2191.15e-216.1e-21
speciesStreptococcus_thermophilus-0.2181.74e-219.13e-21
speciesEubacterium_rectale-0.2172.02e-211.05e-20
genusFlavonifractor0.2172.07e-211.05e-20
speciesFlavonifractor_plautii0.2172.07e-211.05e-20
speciesFusobacterium_ulcerans0.2172.53e-211.27e-20
orderBurkholderiales0.2172.81e-211.4e-20
genusBifidobacterium-0.2163.15e-211.55e-20
speciesFusobacterium_nucleatum0.2163.99e-211.94e-20
speciesLactobacillus_salivarius0.2155.31e-212.56e-20
speciesVeillonella_unclassified0.2156.45e-213.08e-20
orderBifidobacteriales-0.2146.87e-213.21e-20
familyBifidobacteriaceae-0.2146.87e-213.21e-20
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2131.09e-205.04e-20
speciesVeillonella_atypica0.213.84e-201.76e-19
genusAnaerostipes-0.2088.75e-203.97e-19
speciesBacteroides_stercoris0.2062.37e-191.07e-18
genusAnaerotruncus-0.2021.09e-184.85e-18
genusAggregatibacter0.2021.34e-185.91e-18
genusActinobacillus0.2012.02e-188.75e-18
speciesActinobacillus_unclassified0.2012.02e-188.75e-18
speciesLachnospiraceae_bacterium_5_1_63FAA-0.22.32e-189.95e-18
classBacteroidia0.1985.53e-182.33e-17
orderBacteroidales0.1985.53e-182.33e-17
phylumBacteroidetes0.1985.57e-182.33e-17
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1942.83e-171.17e-16
familySutterellaceae0.1891.55e-166.36e-16
speciesPrevotella_buccae0.1891.68e-166.84e-16
speciesFusobacterium_varium0.1882.2e-168.88e-16
speciesMitsuokella_unclassified-0.1882.48e-169.92e-16
speciesClostridium_symbiosum0.1873.11e-161.23e-15
speciesKlebsiella_unclassified0.1865.19e-162.04e-15
genusWeissella0.1865.92e-162.31e-15
speciesBacteroides_thetaiotaomicron0.1856.85e-162.65e-15
speciesAggregatibacter_segnis0.1841e-153.84e-15
speciesCampylobacter_concisus0.1841.15e-154.38e-15
speciesWeissella_confusa0.1831.38e-155.21e-15
genusMitsuokella-0.1831.58e-155.92e-15
speciesBifidobacterium_longum-0.1812.78e-151.03e-14
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1787.8e-152.88e-14
speciesRuminococcus_bromii-0.1743.71e-141.36e-13
speciesClostridium_hathewayi0.1735.38e-141.95e-13
speciesClostridiales_bacterium_1_7_47FAA0.1719.16e-143.3e-13
speciesEnterobacter_aerogenes0.1719.24e-143.3e-13
speciesCoprobacillus_unclassified0.1711.14e-134.05e-13
genusCampylobacter0.171.24e-134.37e-13
genusGordonibacter-0.171.57e-135.45e-13
speciesGordonibacter_pamelaeae-0.171.57e-135.45e-13
classEpsilonproteobacteria0.1691.98e-136.76e-13
orderCampylobacterales0.1691.98e-136.76e-13
speciesOlsenella_unclassified-0.1691.99e-136.76e-13
familyCampylobacteraceae0.1682.73e-139.2e-13
speciesLactobacillus_mucosae0.1682.9e-139.71e-13
genusBarnesiella-0.1657.04e-132.32e-12
speciesBarnesiella_intestinihominis-0.1657.04e-132.32e-12
speciesAlistipes_senegalensis-0.1657.9e-132.59e-12
speciesCoprococcus_sp_ART55_1-0.1641.1e-123.58e-12
genusCoprobacillus0.1641.11e-123.59e-12
speciesPropionibacterium_freudenreichii-0.1631.27e-124.08e-12
speciesErysipelotrichaceae_bacterium_21_3-0.1631.29e-124.11e-12
speciesStreptococcus_infantarius0.163.95e-121.25e-11
speciesMegamonas_unclassified0.1585.65e-121.78e-11
genusMegamonas0.1586.45e-122.02e-11
speciesButyrivibrio_unclassified-0.1578.56e-122.66e-11
speciesClostridium_ramosum0.1579.83e-123.03e-11
speciesBacteroides_plebeius0.1561.05e-113.22e-11
genusOlsenella-0.1561.33e-114.05e-11
speciesClostridium_citroniae0.1551.46e-114.42e-11
familyBacteroidales_noname-0.1551.67e-114.96e-11
genusBacteroidales_noname-0.1551.67e-114.96e-11
speciesBacteroidales_bacterium_ph8-0.1551.67e-114.96e-11
speciesHaemophilus_paraphrohaemolyticus0.1542.49e-117.35e-11
genusPrevotella0.1532.72e-117.97e-11
speciesC2likevirus_unclassified-0.157.28e-112.12e-10
genusC2likevirus-0.1481.14e-103.3e-10
speciesLactococcus_garvieae0.1471.55e-104.46e-10
speciesRuminococcus_lactaris-0.1462.08e-105.95e-10
genusBurkholderiales_noname0.1462.49e-107.04e-10
speciesBurkholderiales_bacterium_1_1_470.1462.49e-107.04e-10
speciesKlebsiella_sp_MS_92_30.1452.72e-107.64e-10
genusParasutterella0.1453.21e-108.91e-10
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speciesClostridium_sp_L2_50-0.1426.03e-101.65e-09
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speciesEubacterium_ventriosum-0.141.25e-093.33e-09
speciesWeissella_cibaria0.1391.39e-093.69e-09
speciesMethanobrevibacter_unclassified-0.1391.56e-094.11e-09
speciesHaemophilus_sputorum0.1391.58e-094.14e-09
speciesButyrivibrio_crossotus-0.1391.64e-094.28e-09
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genusParabacteroides0.1292.04e-084.99e-08
phylumSynergistetes0.1282.66e-086.37e-08
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familySiphoviridae-0.1221.24e-072.77e-07
speciesLachnospiraceae_bacterium_2_1_58FAA0.1211.37e-073.05e-07
speciesStreptococcus_mitis_oralis_pneumoniae0.1192.58e-075.72e-07
speciesParabacteroides_distasonis0.1183.46e-077.63e-07
speciesEnterococcus_faecalis0.1174.1e-079e-07
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speciesEubacterium_biforme-0.1164.65e-071.01e-06
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speciesBilophila_unclassified0.1121.23e-062.63e-06
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speciesStreptococcus_pasteurianus0.1121.34e-062.84e-06
genusProteus0.1111.38e-062.91e-06
speciesProteus_mirabilis0.1111.64e-063.44e-06
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genusPropionibacterium-0.1092.27e-064.72e-06
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genusDialister-0.1073.66e-067.51e-06
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speciesAlistipes_shahii-0.1011.13e-052.2e-05
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speciesLactococcus_lactis-0.0953.8e-057.12e-05
speciesBacteroides_intestinalis0.0944.32e-058.06e-05
genusSiphoviridae_noname-0.0944.46e-058.29e-05
speciesParabacteroides_unclassified0.0944.65e-058.61e-05
speciesEubacterium_dolichum0.0935.85e-050.000108
speciesOdoribacter_unclassified-0.0936.09e-050.000112
speciesBifidobacterium_pseudocatenulatum0.0927.01e-050.000127
classDeltaproteobacteria0.0927.05e-050.000127
orderDesulfovibrionales0.0927.05e-050.000127
familyDesulfovibrionaceae0.0927.05e-050.000127
speciesLactobacillus_acidophilus-0.0917.56e-050.000136
speciesEnterobacteria_phage_HK5440.099.15e-050.000164
speciesMegamonas_funiformis0.099.17e-050.000164
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familyErysipelotrichaceae-0.099.61e-050.00017
familyLeuconostocaceae0.0880.0001450.000255
genusErysipelotrichaceae_noname-0.0870.0001530.000268
speciesClostridium_spiroforme-0.0870.0001640.000287
speciesEubacterium_cylindroides-0.0870.0001690.000294
speciesLactobacillus_fermentum0.0860.0001920.000333
familyOscillospiraceae-0.0860.0001960.000338
genusOscillibacter-0.0860.0001960.000338
speciesBilophila_wadsworthia0.0860.0002080.000357
familyVeillonellaceae0.0850.000250.000428
speciesBacteroides_nordii0.0840.0002720.000463
speciesCollinsella_tanakaei0.0840.0002790.000474
speciesMegamonas_hypermegale0.0840.0002950.000499
speciesLactobacillus_crispatus0.0830.0003120.000524
speciesAlistipes_finegoldii-0.0830.0003120.000524
genusPeptostreptococcus0.0830.0003350.000561
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speciesPeptostreptococcus_stomatis0.0810.000420.000698
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speciesBacteroides_uniformis-0.0810.0004650.000767
speciesAlistipes_onderdonkii-0.0790.0005840.00096
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speciesRuminococcus_callidus-0.0790.0006010.000982
speciesBacteroides_oleiciplenus0.0790.0006360.00104
speciesErysipelotrichaceae_bacterium_6_1_45-0.0790.0006550.00106
speciesLactobacillus_vaginalis0.0790.0006710.00108
speciesHoldemania_unclassified-0.0790.0006770.00109
genusLambdalikevirus0.0780.0007190.00115
speciesBacteroides_finegoldii0.0780.0007530.0012
speciesBacteroides_pectinophilus-0.0750.001160.00185
speciesLactobacillus_amylovorus0.0750.001180.00188
genusCatenibacterium-0.0750.001220.00193
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familyPrevotellaceae0.0750.001260.00198
speciesEggerthella_lenta-0.0750.001260.00198
speciesLactococcus_phage_jm2-0.0740.001420.00222
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speciesSutterella_wadsworthensis-0.0710.002270.00351
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speciesLactobacillus_oris0.0690.002880.00441
familyBacillales_noname0.0680.003250.00495
genusGemella0.0680.003250.00495
speciesLachnospiraceae_bacterium_1_4_56FAA0.0680.00340.00516
genusMethanosphaera-0.0660.004020.00606
speciesMethanosphaera_stadtmanae-0.0660.004020.00606
genusTuricibacter-0.0660.004180.00628
speciesParaprevotella_clara-0.0660.004260.00638
speciesAlistipes_sp_HGB5-0.0650.004670.00698
familyOxalobacteraceae-0.0650.00520.00774
speciesMitsuokella_multacida-0.0640.005830.00865
genusOxalobacter-0.0630.006220.00917
speciesOxalobacter_formigenes-0.0630.006220.00917
speciesBacteroides_massiliensis0.0630.006730.0099
phylumViruses_noname-0.0610.00880.0129
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speciesTuricibacter_unclassified-0.060.009090.0132
genusBlautia-0.0590.01030.015
speciesLactococcus_phage_phi7-0.0590.01070.0155
genusSutterella-0.0580.01170.0169
speciesSutterella_parvirubra0.0580.01190.0171
speciesEnterococcus_faecium0.0580.01190.0171
speciesPeptostreptococcaceae_noname_unclassified-0.0580.01250.0179
speciesBifidobacterium_breve0.0570.01390.0198
speciesParabacteroides_goldsteinii0.0570.01440.0205
speciesParaprevotella_unclassified-0.0560.01560.0221
speciesStreptococcus_vestibularis0.0560.01570.0222
speciesAlistipes_unclassified-0.0550.01660.0234
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orderSelenomonadales0.0550.01680.0235
genusParaprevotella-0.0550.01830.0256
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0540.01880.0262
speciesEggerthella_sp_1_3_56FAA-0.0540.01920.0267
speciesLactobacillus_gasseri0.0530.02160.0299
speciesRuminococcus_sp_JC304-0.0520.02350.0324
genusLactococcus-0.0520.02370.0326
speciesClostridium_bartlettii-0.0520.0240.0329
familyPorphyromonadaceae0.0520.02410.033
orderBacillales0.0520.0250.0341
genusMyoviridae_noname0.0510.02670.0363
speciesEubacterium_eligens-0.0510.0270.0366
speciesBacteroides_sp_1_1_6-0.0510.02710.0367
speciesRoseburia_intestinalis-0.050.02980.0402
classBacilli0.050.0320.043
orderLactobacillales0.0490.03280.044
speciesEggerthella_unclassified0.0490.03550.0475
speciesStreptococcus_gordonii0.0480.0360.048
genusLactobacillus0.0480.03620.0481
speciesBacteroides_sp_3_1_190.0480.03680.0488
familyLactobacillaceae0.0480.0380.0502
speciesGemella_morbillorum0.0480.03830.0505
speciesBacteroides_caccae0.0480.03980.0523
speciesMegasphaera_elsdenii0.0460.04440.0582
genusActinomyces-0.0460.04490.0587
speciesDesulfovibrio_piger-0.0460.04650.0606
speciesPorphyromonas_uenonis0.0460.04670.0607
speciesTuricibacter_sanguinis-0.0450.05090.066
speciesLactobacillus_delbrueckii-0.0450.0520.0672
speciesHoldemania_sp_AP20.0450.05230.0674
speciesParaprevotella_xylaniphila-0.0450.05310.0683
speciesRothia_mucilaginosa0.0450.05390.0691
speciesLactobacillus_sanfranciscensis0.0440.05440.0696
speciesStreptococcus_australis0.0440.05470.0698
speciesClostridium_asparagiforme0.0440.05570.0709
familyActinomycetaceae-0.0440.05630.0714
genusPhascolarctobacterium-0.0430.06150.0776
speciesPhascolarctobacterium_succinatutens-0.0430.06150.0776
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0420.07270.0915
genusSolobacterium0.0410.07720.0967
speciesSolobacterium_moorei0.0410.07720.0967
speciesParabacteroides_sp_D13-0.0410.07840.0979
speciesLactobacillus_ruminis-0.0390.09330.116
speciesBacteroides_clarus0.0390.09380.117
speciesParabacteroides_johnsonii0.0380.1020.126
genusPeptostreptococcaceae_noname-0.0370.1050.13
speciesCollinsella_intestinalis0.0370.1070.132
speciesBacteroides_coprophilus0.0360.1150.141
genusOdoribacter-0.0360.1190.146
genusAcidaminococcaceae_unclassified-0.0360.1210.148
speciesBacteroides_faecis0.0360.1210.148
genusTunalikevirus0.0360.1220.148
genusClostridiaceae_noname0.0360.1230.149
speciesClostridiaceae_bacterium_JC1180.0360.1230.149
orderActinomycetales-0.0350.130.157
speciesCoriobacteriaceae_bacterium_phI-0.0350.130.157
speciesBifidobacterium_bifidum-0.0350.1320.159
speciesAnaerotruncus_colihominis0.0340.1360.163
speciesRoseburia_inulinivorans0.0340.1370.164
genusButyricimonas0.0340.1460.173
speciesButyricimonas_synergistica0.0340.1460.173
speciesLactobacillus_reuteri0.0340.1460.173
speciesLachnospiraceae_bacterium_5_1_57FAA0.0330.1480.175
genusAcidaminococcus0.0330.1540.181
genusDesulfovibrio-0.0330.1540.181
genusEggerthella0.0330.160.188
speciesPrevotella_bivia0.0320.1610.189
genusCoriobacteriaceae_noname-0.0320.1690.197
speciesAcidaminococcus_fermentans0.030.1890.22
speciesBifidobacterium_angulatum-0.030.20.233
speciesBacteroides_barnesiae-0.0290.2060.239
speciesCoprobacillus_sp_D60.0290.2120.245
genusLeuconostoc-0.0280.2220.256
speciesBacteroides_cellulosilyticus-0.0280.2220.256
speciesLactococcus_phage_936_sensu_lato-0.0280.2240.257
speciesStreptococcus_salivarius0.0280.2260.259
speciesKlebsiella_phage_KP360.0280.230.263
speciesBacteroides_salanitronis-0.0270.2440.278
familyClostridiales_Family_XI_Incertae_Sedis0.0270.2490.283
speciesAcidaminococcus_unclassified-0.0260.2620.297
speciesClostridium_sp_KLE_1755-0.0250.2770.314
familyPeptostreptococcaceae-0.0250.2780.314
speciesBacteroides_eggerthii0.0240.2920.329
speciesStreptococcus_parasanguinis-0.0240.3030.341
familyMicrococcaceae0.0240.3050.342
speciesDialister_succinatiphilus-0.0240.3070.343
genusRothia0.0230.3130.349
genusButyricicoccus0.0230.3210.356
speciesButyricicoccus_pullicaecorum0.0230.3210.356
genusRoseburia-0.0220.350.388
speciesOdoribacter_splanchnicus-0.0210.3650.403
speciesSlackia_piriformis-0.0210.3740.412
speciesDesulfovibrio_desulfuricans-0.020.3830.421
speciesBacteroides_sp_4_3_47FAA0.020.3890.427
familyAcidaminococcaceae-0.020.390.427
orderPseudomonadales-0.0190.4010.437
speciesBacteroides_sp_2_1_22-0.0190.4010.437
familyViruses_noname0.0190.4030.437
genusViruses_noname0.0190.4030.437
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0170.4630.501
genusPeptoniphilus0.0170.4710.508
genusStaphylococcus-0.0170.4710.508
speciesOdoribacter_laneus-0.0170.4740.51
speciesStreptococcus_mutans0.0160.4820.517
speciesLactococcus_phage_bIL67-0.0160.5010.536
speciesStreptococcus_phage_Sfi210.0150.5140.549
genusParvimonas0.0150.5150.549
speciesParvimonas_unclassified0.0150.5170.549
familyStreptococcaceae0.0150.5180.549
familyPodoviridae0.0140.5340.565
speciesParabacteroides_sp_20_3-0.0140.5570.588
genusSuccinatimonas0.0130.5630.592
speciesSuccinatimonas_hippei0.0130.5630.592
speciesPeptostreptococcus_anaerobius-0.0130.5730.601
speciesErysipelotrichaceae_bacterium_3_1_53-0.0130.5890.616
speciesCoprobacillus_sp_29_10.0120.6160.643
speciesBacteroides_dorei-0.010.6660.693
genusStreptococcus0.010.6670.693
orderViruses_noname-0.010.680.705
speciesStreptococcus_sanguinis-0.0090.6960.72
familySuccinivibrionaceae0.0090.7080.731
speciesEubacterium_sp_3_1_31-0.0090.7110.733
speciesPorphyromonas_asaccharolytica-0.0080.7260.747
speciesCollinsella_unclassified0.0080.7340.753
speciesBacteroides_fluxus-0.0080.7380.756
speciesEubacterium_limosum0.0080.7430.759
speciesParabacteroides_merdae0.0070.7640.779
speciesOscillibacter_sp_KLE_1745-0.0060.7810.794
speciesBlautia_producta0.0060.7820.794
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0060.7930.803
speciesDorea_unclassified0.0060.7970.806
genusSlackia-0.0050.8210.828
speciesOscillibacter_sp_KLE_1728-0.0050.8430.848
speciesLactobacillus_plantarum-0.0030.8820.886
familyStaphylococcaceae-0.0030.8890.891
genusPorphyromonas0.0030.9010.901
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.1322288883080.03835416414922.02572943205e-0913964.68944
Type II diabetesDenmark752770.03838393191980.02132927450821.17073490125e-0710243.35661
Crohns diseaseSpain17660.1117545855640.02456798988350.00013369047200521587.1754
Type II diabetesChina1831850.09458164937040.07302168368760.058650220178747824.7133
Colorectal cancerAustria64350.1281595733180.0358259292250.0594536599682333011.2667
ObesityDenmark1691230.02561765626340.03454117496760.154766195629945731.0973
Ulcerative colitisSpain78660.01804798929270.02456798988350.8186223021952612986.1945
Type II diabetesSweden53920.02144716936130.02219944763520.9637871852982855296.6881
Rheumatoid arthritisChina127980.05955443602120.05013928914630.9662257533752917697.2955
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382