MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-06-29 17:51:33 PST
Job id & description: 2034, CsrA
Query type: protein
Count queries & homologs: 1, 117
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
CsrA8834993CompleteK03563COG1551ProteobacteriaEnterobacter100.0100.0100.0
CsrA8810089CompleteK03563COG1551ProteobacteriaKlebsiella100.0100.0100.0
CsrA8689638Lack 5'-endK03563COG1551ProteobacteriaEscherichia100.093.85100.0
CsrA8846673CompleteK03563COG1551Proteobacteriaunknown100.0100.096.72
CsrA8839225CompleteK03563COG1551ProteobacteriaVibrio100.0100.096.72
CsrA8757184CompleteK03563COG1551ProteobacteriaProvidencia98.3695.2495.0
CsrA8835766CompleteK03563COG1551ProteobacteriaProvidencia98.3698.3693.33
CsrA8795012CompleteK03563COG1551ProteobacteriaProteus98.3696.7791.67
CsrA8795408CompleteK03563COG1551ProteobacteriaAeromonas90.1688.71100.0
CsrA8877095CompleteK03563COG1551ProteobacteriaAggregatibacter98.36100.065.0
CsrA8868264CompleteK03563COG1551ProteobacteriaHaemophilus93.4495.070.18
CsrA8736520CompleteK03563COG1551ProteobacteriaHaemophilus95.0892.0667.24
CsrA8190379CompleteK03563COG1551unknownunknown93.4473.0850.88
CsrA8114252Lack 5'-endK03563COG1551unknownunknown96.7273.7547.46
CsrA8112576CompleteK03563COG1551unknownunknown96.7273.7547.46
CsrA8401936CompleteK03563COG1551unknownunknown88.5275.057.41
CsrA8406141CompleteK03563COG1551unknownunknown88.5275.055.56
CsrA8164132Lack 5'-endK03563COG1551unknownunknown98.3675.9548.33
CsrA8393886CompleteK03563COG1551unknownunknown85.2572.2255.77
CsrA8177874CompleteK03563COG1551unknownunknown96.7275.6447.46
CsrA8216280CompleteK03563COG1551unknownunknown93.4474.0347.37
CsrA8255705CompleteK03563COG1551unknownunknown96.7277.6347.46
CsrA8425216CompleteK03563COG1551FirmicutesClostridium85.2572.2250.0
CsrA8193088CompleteK03563COG1551unknownunknown96.7275.6447.46
CsrA7990393Lack 5'-endK03563COG1551unknownunknown96.7270.2447.46
CsrA8284152CompleteK03563COG1551FirmicutesEubacterium96.7278.6747.46
CsrA8550258Lack 3'-endK03563COG1551Proteobacteriaunknown88.5278.2651.85
CsrA8393895CompleteK03563COG1551FirmicutesRoseburia88.5275.053.7
CsrA8392519CompleteK03563COG1551unknownunknown98.3683.3343.33
CsrA8436640CompleteK03563COG1551unknownunknown88.5276.0650.0
CsrA8374972Lack 5'-endK03563COG1551FirmicutesButyrivibrio98.3683.5650.82
CsrA8466881CompleteK03563COG1551unknownunknown88.5276.0653.7
CsrA8361570CompleteK03563COG1551unknownunknown85.2571.2353.85
CsrA8398109CompleteK03563COG1551SpirochaetesTreponema98.3683.3345.0
CsrA8382887CompleteK03563COG1551unknownunknown85.2571.2353.85
CsrA8430842CompleteK03563COG1551unknownunknown88.5276.0653.7
CsrA8430204CompleteK03563COG1551unknownunknown88.5276.0653.7
CsrA8355212CompleteK03563COG1551unknownunknown85.2571.2355.77
CsrA8451704CompleteK03563COG1551unknownunknown88.5276.0653.7
CsrA8433483CompleteK03563COG1551FirmicutesRoseburia88.5276.0650.0
CsrA8430591CompleteK03563COG1551FirmicutesRoseburia88.5276.0650.0
CsrA8396616CompleteK03563COG1551unknownunknown98.3683.3345.0
CsrA8392047CompleteK03563COG1551unknownunknown85.2572.2253.85
CsrA8462745CompleteK03563COG1551Firmicutesunknown88.5276.0648.15
CsrA8391739CompleteK03563COG1551unknownunknown85.2572.2251.92
CsrA8444503CompleteK03563COG1551unknownunknown85.2573.2453.85
CsrA8290148CompleteK03563COG1551unknownunknown93.4476.047.37
CsrA8394479CompleteK03563COG1551unknownunknown85.2572.2251.92
CsrA8410522CompleteK03563COG1551unknownunknown93.4479.1747.37
CsrA8409641CompleteK03563COG1551unknownunknown85.2572.2251.92
CsrA8433135CompleteK03563COG1551unknownunknown88.5276.0646.3
CsrA8432535CompleteK03563COG1551unknownunknown88.5276.0646.3
CsrA8393952CompleteK03563COG1551Firmicutesunknown98.3683.3346.67
CsrA8411196CompleteK03563COG1551unknownunknown88.5275.050.0
CsrA8392808CompleteK03563COG1551FirmicutesRoseburia88.5275.048.15
CsrA8291729CompleteK03563COG1551unknownunknown98.3680.043.33
CsrA8423398CompleteK03563COG1551FirmicutesRoseburia88.5275.048.15
CsrA8422452CompleteK03563COG1551FirmicutesRoseburia88.5275.048.15
CsrA8404213CompleteK03563COG1551unknownunknown98.3683.3338.33
CsrA8393072CompleteK03563COG1551unknownunknown83.6170.8347.06
CsrA8391429CompleteK03563COG1551unknownunknown98.3683.3345.0
CsrA8336643CompleteK03563COG1551unknownunknown91.875.6842.86
CsrA8391680CompleteK03563COG1551unknownunknown86.8973.6149.06
CsrA8441593CompleteK03563COG1551unknownunknown88.5276.0648.15
CsrA8408294CompleteK03563COG1551unknownunknown85.2572.2250.0
CsrA8077755CompleteK03563COG1551unknownunknown96.7272.8433.9
CsrA8421365CompleteK03563COG1551unknownunknown85.2572.2250.0
CsrA8399034CompleteK03563COG1551unknownunknown85.2572.2248.08
CsrA8406074CompleteK03563COG1551unknownunknown85.2572.2250.0
CsrA8440306CompleteK03563COG1551unknownunknown93.4480.2842.11
CsrA8333101CompleteK03563COG1551unknownunknown98.3681.0841.67
CsrA8330899CompleteK03563COG1551unknownunknown98.3681.0838.33
CsrA8391657CompleteK03563COG1551unknownunknown85.2572.2248.08
CsrA8399241CompleteK03563COG1551unknownunknown96.7280.5645.76
CsrA8332268CompleteK03563COG1551unknownunknown98.3681.0838.33
CsrA8393688CompleteK03563COG1551Firmicutesunknown98.3684.7242.62
CsrA8324231CompleteK03563COG1551unknownunknown98.3681.0838.33
CsrA8112311CompleteK03563COG1551unknownunknown98.3675.038.33
CsrA8391759CompleteK03563COG1551unknownunknown85.2572.2246.15
CsrA8374008Lack 5'-endK03563COG1551unknownunknown96.7280.8240.68
CsrA8329452CompleteK03563COG1551unknownunknown85.2570.2744.23
CsrA8393408CompleteK03563COG1551unknownunknown96.7280.5644.07
CsrA8379020CompleteK03563COG1551FirmicutesSelenomonas98.3682.1941.67
CsrA8395046CompleteK03563COG1551unknownunknown96.7281.9440.68
CsrA8480167CompleteK03563COG1551unknownunknown93.4481.4340.35
CsrA8434266CompleteK03563COG1551unknownunknown96.7283.140.68
CsrA8438383CompleteK03563COG1551unknownunknown85.2573.2440.38
CsrA8295658CompleteK03563unknownunknownunknown98.3680.036.67
CsrA8463392CompleteK03563COG1551unknownunknown96.7283.140.68
CsrA8440054CompleteK03563COG1551Firmicutesunknown93.4480.2838.6
CsrA8340152CompleteK03563COG1551unknownunknown93.4477.0340.35
CsrA8481988CompleteK03563COG1551unknownunknown85.2574.2942.31
CsrA8400696CompleteK03563COG1551unknownunknown85.2572.2242.31
CsrA8477934CompleteK03563COG1551unknownunknown98.3685.7133.33
CsrA8392581CompleteK03563COG1551unknownunknown85.2572.2244.23
CsrA8477931CompleteK03563COG1551unknownunknown93.4481.4338.6
CsrA8459042CompleteK03563COG1551unknownunknown88.5276.0637.04
CsrA8353726Lack 5'-endK03563COG1551unknownunknown93.4477.0338.6
CsrA8318838CompleteK03563COG1551FirmicutesClostridium96.7278.6730.51
CsrA8213138CompleteK03563COG1551unknownunknown100.076.6242.62
CsrA8234522CompleteK03563COG1551unknownunknown100.076.6242.62
CsrA8271347CompleteK03563COG1551unknownunknown100.077.6337.7
CsrA8235385CompleteK03563COG1551FirmicutesAnaerotruncus96.7274.0345.76
CsrA8218471CompleteK03563NOG74234unknownunknown98.3675.3241.67
CsrA9021436Lack 3'-endK03563NOG258522unknownunknown95.0898.2536.21
CsrA8410393CompleteK03563NOG258522unknownunknown98.3683.3331.67
CsrA8104927CompleteK03563NOG74234unknownunknown100.071.639.34
CsrA9126944Lack 3'-endK03563COG1551unknownunknown83.6196.342.31
CsrA8968804Lack 3'-endK03563COG1551unknownunknown91.896.5541.07
CsrA8284741CompleteK03563COG1551FirmicutesEubacterium93.4478.6740.68
CsrA8283822CompleteK03563COG1551FirmicutesEubacterium93.4478.6740.68
CsrA8266201CompleteK03563COG1551ProteobacteriaHelicobacter98.3681.5841.94
CsrA8341282CompleteK03563COG1551unknownunknown98.3681.0831.67
CsrA8120786CompleteunknownNOG279869unknownunknown100.077.538.71
CsrA8407208CompleteK03563COG1551unknownunknown81.9773.6141.51
CsrA8238510CompleteK03563NOG74234unknownunknown98.3674.0338.33
CsrA8773936Completeunknownunknownunknownunknown72.1370.9740.91
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusRoseburia0.4654.31e-1012.03e-98
speciesRoseburia_inulinivorans0.3971.17e-712.76e-69
familyLachnospiraceae0.3542.85e-564.48e-54
genusFaecalibacterium0.3283.21e-483.03e-46
speciesFaecalibacterium_prausnitzii0.3283.21e-483.03e-46
classClostridia0.2932.32e-381.56e-36
orderClostridiales0.2932.32e-381.56e-36
phylumFirmicutes0.2719.62e-335.68e-31
classBacteroidia-0.2651.82e-317.85e-30
orderBacteroidales-0.2651.82e-317.85e-30
phylumBacteroidetes-0.2651.83e-317.85e-30
speciesEubacterium_eligens0.2593.93e-301.55e-28
classGammaproteobacteria0.2561.98e-297.19e-28
speciesRoseburia_intestinalis0.2554.09e-291.38e-27
genusButyrivibrio0.2456.56e-272.06e-25
phylumProteobacteria0.2357.34e-252.17e-23
speciesRoseburia_hominis0.2281.96e-235.44e-22
speciesHaemophilus_parainfluenzae0.2272.5e-236.56e-22
genusHaemophilus0.2264.6e-231.14e-21
speciesButyrivibrio_crossotus0.2255.77e-231.36e-21
orderPasteurellales0.2256.89e-231.48e-21
familyPasteurellaceae0.2256.89e-231.48e-21
genusKlebsiella0.2164.23e-218.68e-20
speciesVeillonella_unclassified0.2155.72e-211.12e-19
genusVeillonella0.2113.08e-205.82e-19
orderEnterobacteriales0.2089.41e-201.65e-18
familyEnterobacteriaceae0.2089.41e-201.65e-18
genusEubacterium0.2071.65e-192.78e-18
familyEubacteriaceae0.2071.75e-192.85e-18
genusPantoea0.2037.08e-191.08e-17
speciesPantoea_unclassified0.2037.08e-191.08e-17
speciesKlebsiella_pneumoniae0.2029.55e-191.41e-17
speciesVeillonella_parvula0.1961.19e-171.7e-16
genusEnterobacter0.1864.87e-166.76e-15
genusPeptostreptococcaceae_noname0.1821.89e-152.55e-14
speciesEubacterium_ventriosum0.1822.07e-152.68e-14
speciesEnterobacter_cloacae0.1822.1e-152.68e-14
speciesVeillonella_atypica0.184.59e-155.7e-14
speciesClostridium_perfringens0.1771.08e-141.31e-13
familyRuminococcaceae0.1752.22e-142.62e-13
speciesEubacterium_siraeum0.1752.7e-143.11e-13
speciesRuminococcus_lactaris0.1734.25e-144.78e-13
familyPeptostreptococcaceae0.1734.43e-144.86e-13
genusParabacteroides-0.1621.89e-122.03e-11
genusEggerthella-0.1612.24e-122.35e-11
genusActinobacillus0.1612.46e-122.44e-11
speciesActinobacillus_unclassified0.1612.46e-122.44e-11
genusEscherichia0.1612.48e-122.44e-11
speciesSubdoligranulum_sp_4_3_54A2FAA-0.163.29e-123.17e-11
speciesVeillonella_dispar0.1595.34e-125.04e-11
speciesStreptococcus_salivarius0.1586.09e-125.64e-11
speciesEggerthella_lenta-0.1551.41e-111.28e-10
speciesRuminococcus_callidus0.1542.29e-112.04e-10
speciesPeptostreptococcaceae_noname_unclassified0.1542.37e-112.07e-10
speciesEggerthella_unclassified-0.1523.42e-112.93e-10
speciesEscherichia_coli0.1523.81e-113.21e-10
familyPorphyromonadaceae-0.1498.78e-117.27e-10
speciesKlebsiella_oxytoca0.1462.11e-101.72e-09
speciesCoprococcus_catus0.1443.55e-102.84e-09
genusCitrobacter0.1444.3e-103.38e-09
speciesCitrobacter_unclassified0.1419.62e-107.44e-09
speciesBacteroides_pectinophilus0.1391.75e-091.33e-08
genusCoprococcus0.1345.78e-094.33e-08
speciesRuminococcus_bromii0.1346.18e-094.56e-08
speciesErysipelotrichaceae_bacterium_6_1_45-0.1346.58e-094.78e-08
speciesClostridium_clostridioforme-0.1337.01e-095.01e-08
speciesCitrobacter_freundii0.1338.08e-095.69e-08
speciesErysipelotrichaceae_bacterium_2_2_44A-0.1321.01e-087.01e-08
familyOscillospiraceae-0.1273.29e-082.22e-07
genusOscillibacter-0.1273.29e-082.22e-07
speciesOscillibacter_unclassified-0.1264.61e-083.06e-07
genusCoprobacillus-0.1255.22e-083.42e-07
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.1248.32e-085.38e-07
speciesBlautia_hydrogenotrophica-0.1221.28e-078.16e-07
speciesClostridium_bolteae-0.1211.49e-079.38e-07
familyBacteroidaceae-0.1211.65e-071.01e-06
genusBacteroides-0.1211.65e-071.01e-06
familyStreptococcaceae0.1192.43e-071.47e-06
speciesHaemophilus_sputorum0.1183.38e-072.02e-06
classBacilli0.1164.59e-072.71e-06
orderLactobacillales0.1155.53e-073.22e-06
speciesCoprococcus_sp_ART55_10.1155.76e-073.32e-06
genusFlavonifractor-0.1148.29e-074.66e-06
speciesFlavonifractor_plautii-0.1148.29e-074.66e-06
genusStreptococcus0.1121.27e-067.05e-06
speciesClostridium_bartlettii0.111.73e-069.49e-06
speciesClostridiales_bacterium_1_7_47FAA-0.111.81e-069.76e-06
speciesKlebsiella_sp_MS_92_30.111.82e-069.76e-06
speciesMegasphaera_micronuciformis0.111.87e-069.92e-06
familyPropionibacteriaceae-0.1092.36e-061.24e-05
speciesLachnospiraceae_bacterium_1_1_57FAA0.1073.38e-061.74e-05
speciesEscherichia_unclassified0.1073.4e-061.74e-05
speciesBlautia_producta-0.1073.56e-061.81e-05
genusTuricibacter0.1064.47e-062.24e-05
genusMitsuokella0.1064.71e-062.34e-05
speciesMitsuokella_unclassified0.1054.91e-062.41e-05
speciesClostridium_leptum-0.1055.36e-062.61e-05
familyRikenellaceae-0.1046.11e-062.91e-05
genusAlistipes-0.1046.11e-062.91e-05
speciesAnaerostipes_unclassified-0.1047.28e-063.44e-05
speciesOscillibacter_sp_KLE_1728-0.1037.64e-063.57e-05
speciesRuminococcus_gnavus-0.1037.73e-063.58e-05
speciesEnterobacter_aerogenes0.1038.17e-063.74e-05
speciesCoprobacillus_sp_29_1-0.1038.69e-063.94e-05
speciesTuricibacter_unclassified0.1029.19e-064.09e-05
speciesBacteroides_ovatus-0.1029.19e-064.09e-05
speciesRuminococcus_obeum0.1029.35e-064.12e-05
genusAggregatibacter0.11.51e-056.6e-05
genusParasutterella0.0982e-058.58e-05
speciesParasutterella_excrementihominis0.0982e-058.58e-05
speciesAlistipes_sp_AP11-0.0982.14e-059.1e-05
genusRuminococcus0.0972.6e-050.00011
speciesEubacterium_sp_3_1_31-0.0972.63e-050.00011
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0963.18e-050.000132
speciesCampylobacter_concisus0.0953.68e-050.000151
speciesEubacterium_ramulus0.0953.91e-050.000159
speciesAnaerotruncus_colihominis-0.0944.4e-050.000178
speciesEubacterium_limosum-0.0944.89e-050.000196
speciesAnaerotruncus_unclassified0.0945.02e-050.000199
speciesParaprevotella_xylaniphila0.0945.08e-050.0002
speciesTuricibacter_sanguinis0.0935.24e-050.000204
speciesEubacterium_dolichum-0.0935.34e-050.000207
speciesLachnospiraceae_bacterium_3_1_46FAA0.0935.48e-050.00021
genusPropionibacterium-0.0926.91e-050.000263
genusOxalobacter0.099.56e-050.000358
speciesOxalobacter_formigenes0.099.56e-050.000358
speciesHaemophilus_paraphrohaemolyticus0.0890.0001110.000409
speciesDorea_formicigenerans0.0890.0001110.000409
phylumEuryarchaeota0.0880.000130.000476
speciesStreptococcus_australis0.0880.0001320.000479
speciesStreptococcus_parasanguinis0.0880.0001360.00049
genusClostridiaceae_noname-0.0880.0001420.000504
speciesClostridiaceae_bacterium_JC118-0.0880.0001420.000504
speciesCoprobacillus_unclassified-0.0880.0001460.000514
speciesMethanobrevibacter_smithii0.0870.0001550.000542
familyOxalobacteraceae0.0870.0001650.000573
speciesClostridium_ramosum-0.0870.0001760.000606
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0860.0001840.000629
speciesAggregatibacter_segnis0.0860.0001910.000649
genusGordonibacter-0.0860.0001990.000666
speciesGordonibacter_pamelaeae-0.0860.0001990.000666
speciesCoprococcus_eutactus0.0850.0002410.000801
genusProteus0.0850.0002470.000815
speciesDialister_succinatiphilus0.0850.0002510.000823
genusLachnospiraceae_noname0.0840.0002860.000931
speciesBacteroides_intestinalis0.0830.0003170.00102
speciesClostridium_symbiosum-0.0830.0003310.00106
speciesParaprevotella_clara0.0830.0003420.00109
genusMethanobrevibacter0.0830.0003430.00109
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0820.0003910.00123
familyVeillonellaceae0.0820.0003970.00124
speciesClostridium_hathewayi-0.0820.0004040.00125
classMethanobacteria0.0810.0004330.00132
orderMethanobacteriales0.0810.0004330.00132
familyMethanobacteriaceae0.0810.0004330.00132
genusParaprevotella0.0810.0004890.00148
genusDorea0.080.0005150.00155
phylumActinobacteria-0.080.0005520.00164
classActinobacteria-0.080.0005520.00164
speciesWeissella_confusa0.080.0005790.00171
orderCoriobacteriales-0.0790.0005860.00171
familyCoriobacteriaceae-0.0790.0005860.00171
speciesButyrivibrio_unclassified0.0790.0006540.00189
speciesClostridium_sp_L2_500.0780.0006870.00198
speciesAcidaminococcus_unclassified-0.0780.0007410.00212
speciesParaprevotella_unclassified0.0770.0008450.0024
speciesEubacterium_rectale0.0770.0008630.00244
genusWeissella0.0770.0009180.00258
speciesAlistipes_senegalensis0.0760.001010.00282
speciesBacteroides_cellulosilyticus0.0750.001190.0033
speciesDorea_longicatena0.0750.001210.00334
speciesCoprococcus_comes0.0740.001380.00379
speciesKlebsiella_unclassified0.0730.001470.00401
familyBurkholderiales_noname0.0730.001630.00442
genusBurkholderiales_noname0.0730.001660.00445
speciesBurkholderiales_bacterium_1_1_470.0730.001660.00445
orderViruses_noname0.0720.001750.00467
speciesLachnospiraceae_bacterium_5_1_63FAA0.0720.001760.00467
speciesMegasphaera_elsdenii0.0710.002140.00564
speciesClostridium_asparagiforme-0.0710.002180.00568
speciesPrevotella_stercorea0.0710.002180.00568
speciesPropionibacterium_freudenreichii-0.070.002350.00609
speciesLachnospiraceae_bacterium_6_1_63FAA-0.070.002450.00632
speciesMitsuokella_multacida0.070.002470.00634
speciesClostridium_sp_KLE_1755-0.070.002530.00645
speciesEubacterium_hallii0.070.002560.00649
speciesLactococcus_garvieae0.070.002570.00649
speciesBifidobacterium_animalis-0.0690.002690.00675
speciesAnaerostipes_hadrus0.0690.002960.00739
familyFusobacteriaceae0.0680.003470.00862
speciesLactobacillus_casei_paracasei-0.0670.00350.00865
speciesBacteroides_plebeius0.0670.003850.00944
speciesOscillibacter_sp_KLE_1745-0.0670.003860.00944
speciesRoseburia_unclassified-0.0660.004050.00985
speciesBacteroides_clarus0.0660.004070.00985
speciesPeptostreptococcus_anaerobius-0.0660.00410.00987
speciesEubacterium_biforme0.0660.00450.0108
genusFusobacterium0.0650.004990.0119
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speciesPrevotella_buccae0.0580.01210.0258
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speciesPrevotella_copri0.0530.02120.0419
familyClostridiales_Family_XI_Incertae_Sedis-0.0530.02190.0431
speciesParabacteroides_johnsonii0.0520.02480.0486
speciesLachnospiraceae_bacterium_2_1_58FAA-0.0520.02510.0489
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speciesStreptococcus_thermophilus-0.0520.02530.0489
speciesBacteroides_sp_1_1_6-0.0510.02610.0503
genusMyoviridae_noname0.0510.02630.0503
speciesDorea_unclassified-0.0510.02630.0503
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0510.02820.0536
familyClostridiales_noname-0.0510.02830.0536
speciesSubdoligranulum_unclassified0.050.02930.0553
genusPhascolarctobacterium0.050.03060.0573
speciesPhascolarctobacterium_succinatutens0.050.03060.0573
speciesParabacteroides_merdae-0.0490.03440.0641
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speciesCollinsella_intestinalis-0.0480.03780.07
speciesStreptococcus_vestibularis0.0480.0390.0719
speciesDialister_invisus-0.0470.04080.0749
speciesProteus_mirabilis0.0460.04480.082
genusMethanosphaera0.0460.04780.0864
speciesMethanosphaera_stadtmanae0.0460.04780.0864
speciesFusobacterium_mortiferum0.0460.04780.0864
genusSutterellaceae_unclassified0.0450.04970.0895
speciesPorphyromonas_asaccharolytica-0.0450.05040.0901
speciesLachnospiraceae_bacterium_8_1_57FAA0.0450.05040.0901
speciesRothia_mucilaginosa0.0450.0530.0944
speciesMegamonas_unclassified0.0440.05460.0969
speciesBacteroides_eggerthii0.0440.05630.0995
genusMegamonas0.0440.05720.1
speciesEnterobacteria_phage_HK5440.0440.05720.1
genusPseudoflavonifractor0.0440.05960.104
speciesPseudoflavonifractor_capillosus0.0440.05960.104
genusCampylobacter0.0430.06380.111
speciesStreptococcus_mitis_oralis_pneumoniae0.0430.06430.111
speciesParvimonas_unclassified-0.0430.06540.112
genusParvimonas-0.0430.06550.112
speciesErysipelotrichaceae_bacterium_21_3-0.0420.0690.118
speciesBifidobacterium_longum-0.0420.06910.118
speciesLactobacillus_acidophilus-0.0420.06990.119
genusOlsenella0.0420.0710.12
speciesBacteroides_massiliensis0.0420.07150.121
genusSubdoligranulum0.0420.0720.121
speciesAlistipes_onderdonkii-0.0420.07250.121
familySutterellaceae0.0410.07670.128
familyClostridiaceae-0.0410.07760.129
genusAcidaminococcus-0.0410.07860.13
familyCampylobacteraceae0.040.0810.134
genusAnaerotruncus0.040.08530.14
speciesLactococcus_phage_phi70.040.08540.14
speciesBacteroides_sp_2_1_22-0.040.08710.142
genusBarnesiella0.0390.08990.146
speciesBarnesiella_intestinihominis0.0390.08990.146
genusCoprobacter0.0390.09190.148
speciesCoprobacter_fastidiosus0.0390.09190.148
speciesBifidobacterium_breve-0.0380.09720.156
speciesEubacterium_cylindroides0.0380.09750.156
genusTunalikevirus0.0380.09810.156
speciesBacteroides_oleiciplenus0.0380.1050.167
genusClostridium-0.0370.1070.169
classEpsilonproteobacteria0.0370.110.173
orderCampylobacterales0.0370.110.173
familyBacillales_noname0.0370.1110.173
genusGemella0.0370.1110.173
speciesEggerthella_sp_1_3_56FAA-0.0370.1110.173
genusPorphyromonas-0.0370.1140.177
speciesParabacteroides_sp_D130.0360.1160.18
speciesAlistipes_indistinctus-0.0360.1240.191
speciesKlebsiella_phage_KP360.0350.1260.194
familyBacteroidales_noname0.0350.1290.196
genusBacteroidales_noname0.0350.1290.196
speciesBacteroidales_bacterium_ph80.0350.1290.196
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.0340.1420.216
genusSlackia-0.0340.1460.221
speciesPrevotella_bivia-0.0340.1470.222
speciesLeuconostoc_lactis0.0330.1480.222
familyActinomycetaceae-0.0330.150.225
genusActinomyces-0.0330.1550.232
speciesDesulfovibrio_piger0.0330.1560.232
speciesLactobacillus_delbrueckii-0.0330.160.237
orderPseudomonadales-0.0320.1680.249
genusDesulfovibrio0.0320.1720.252
speciesMegamonas_funiformis0.0320.1720.252
speciesAlistipes_putredinis-0.0320.1720.252
genusCollinsella-0.0310.1780.26
speciesPorphyromonas_uenonis-0.0310.1830.267
speciesBacteroides_barnesiae0.0310.1870.271
speciesAlistipes_finegoldii-0.0310.1870.271
genusClostridiales_noname-0.030.1880.271
genusSolobacterium0.030.1890.271
speciesSolobacterium_moorei0.030.1890.271
speciesLactococcus_lactis-0.030.190.272
genusCatenibacterium0.030.1980.281
speciesCatenibacterium_mitsuokai0.030.1980.281
orderBacillales0.030.2010.285
classBetaproteobacteria0.0290.2030.287
genusMorganella0.0290.2120.298
speciesMorganella_morganii0.0290.2120.298
speciesBacteroides_thetaiotaomicron-0.0290.2130.298
genusRuminococcaceae_noname0.0280.2180.304
speciesRuminococcaceae_bacterium_D160.0280.2180.304
speciesBacteroides_coprophilus0.0270.2370.329
genusAcidaminococcaceae_unclassified-0.0270.2440.338
speciesLactobacillus_oris-0.0270.2450.338
speciesStreptococcus_gordonii0.0260.2640.362
speciesParabacteroides_distasonis0.0260.2640.362
orderBurkholderiales0.0250.2720.372
speciesLactobacillus_salivarius0.0250.2740.374
speciesFusobacterium_varium0.0250.2780.378
phylumSynergistetes0.0240.3010.405
classSynergistia0.0240.3010.405
orderSynergistales0.0240.3010.405
familySynergistaceae0.0240.3010.405
speciesMegamonas_hypermegale0.0240.3060.409
phylumVerrucomicrobia-0.0230.3110.409
classVerrucomicrobiae-0.0230.3110.409
orderVerrucomicrobiales-0.0230.3110.409
familyVerrucomicrobiaceae-0.0230.3110.409
genusAkkermansia-0.0230.3110.409
speciesDesulfovibrio_desulfuricans0.0230.3110.409
speciesAkkermansia_muciniphila-0.0230.3110.409
speciesBifidobacterium_pseudocatenulatum0.0230.3180.417
genusRothia0.0230.3190.417
familyMicrococcaceae0.0230.3270.426
phylumViruses_noname0.0220.3340.433
classViruses_noname0.0220.3340.433
speciesLactobacillus_reuteri0.0220.3410.441
speciesLactobacillus_crispatus0.0220.3490.45
genusButyricicoccus-0.0210.3540.454
speciesButyricicoccus_pullicaecorum-0.0210.3540.454
speciesStreptococcus_phage_Sfi210.0210.3630.464
speciesBifidobacterium_dentium0.0210.370.472
speciesStreptococcus_lutetiensis0.0210.3720.473
genusBlautia-0.0210.3730.473
speciesCoriobacteriaceae_bacterium_phI-0.020.3840.486
genusButyricimonas0.020.3910.492
speciesButyricimonas_synergistica0.020.3910.492
speciesAlistipes_sp_HGB5-0.020.3930.493
speciesParabacteroides_sp_20_30.020.3950.495
genusSiphoviridae_noname0.0190.40.499
speciesBacteroides_salanitronis0.0190.4040.503
familySiphoviridae-0.0190.4140.514
speciesFusobacterium_ulcerans0.0180.4340.538
speciesBilophila_wadsworthia0.0180.4390.542
genusAnaerostipes0.0180.4450.545
genusLactococcus-0.0180.4470.545
speciesBacteroides_faecis0.0180.4470.545
classErysipelotrichia0.0180.4480.545
orderErysipelotrichales0.0180.4480.545
familyErysipelotrichaceae0.0180.4480.545
genusStaphylococcus-0.0170.4520.548
speciesBacteroides_fragilis0.0170.4560.552
speciesLactococcus_phage_936_sensu_lato0.0160.4870.588
speciesRuminococcus_sp_JC304-0.0160.4960.597
speciesSlackia_piriformis-0.0160.4970.597
genusCoriobacteriaceae_noname-0.0160.4990.597
speciesLactobacillus_vaginalis0.0160.50.597
speciesOdoribacter_laneus0.0150.5030.6
speciesLactobacillus_fermentum0.0150.5070.603
genusAdlercreutzia0.0150.5120.606
speciesAdlercreutzia_equolifaciens0.0150.5120.606
speciesBifidobacterium_catenulatum-0.0150.5160.609
speciesBacteroides_sp_3_1_190.0150.5210.613
genusPyramidobacter0.0150.5240.614
speciesPyramidobacter_piscolens0.0150.5240.614
speciesBifidobacterium_adolescentis0.0140.5350.625
familySuccinivibrionaceae0.0140.5450.635
speciesClostridium_nexile0.0140.5460.635
speciesBacteroides_fluxus0.0140.5530.641
speciesAcidaminococcus_intestini0.0140.5550.642
speciesGemella_morbillorum0.0140.5560.642
speciesParabacteroides_unclassified-0.0130.5680.654
familyStaphylococcaceae-0.0130.5710.654
speciesCollinsella_tanakaei-0.0130.5720.654
genusEnterococcus0.0130.5730.654
speciesBifidobacterium_angulatum0.0130.5740.654
speciesStreptococcus_anginosus0.0130.5790.659
genusPeptostreptococcus-0.0130.5830.661
familyAcidaminococcaceae0.0120.5980.677
speciesBacteroides_stercoris-0.0120.6010.679
speciesLactobacillus_plantarum-0.0120.6050.682
genusSuccinatimonas0.0120.6120.686
speciesSuccinatimonas_hippei0.0120.6120.686
speciesBacteroides_nordii0.0120.6180.691
genusDialister-0.0110.6370.711
familyEnterococcaceae0.010.6530.725
speciesAlistipes_unclassified0.010.6540.725
speciesBacteroides_vulgatus-0.010.6540.725
speciesLactococcus_phage_P6800.010.6640.734
familyLactobacillaceae0.0090.6820.752
speciesMegamonas_rupellensis0.0090.6840.753
speciesLactobacillus_sanfranciscensis0.0090.6940.762
speciesEnterococcus_faecium-0.0080.7190.787
speciesStreptococcus_pasteurianus-0.0080.7250.792
classDeltaproteobacteria0.0080.7410.804
orderDesulfovibrionales0.0080.7410.804
familyDesulfovibrionaceae0.0080.7410.804
speciesParabacteroides_goldsteinii0.0070.7480.81
speciesLactobacillus_gasseri-0.0070.760.821
genusOdoribacter0.0070.7660.825
genusLactobacillus0.0070.7740.832
speciesLactobacillus_mucosae0.0070.7770.834
speciesHoldemania_sp_AP2-0.0060.7810.836
speciesSutterella_parvirubra-0.0060.7860.839
genusHoldemania-0.0050.8160.869
speciesOdoribacter_splanchnicus-0.0050.8430.896
orderCaudovirales0.0040.8570.909
genusSutterella-0.0030.8820.933
speciesBacteroides_sp_4_3_47FAA-0.0030.8860.935
speciesStreptococcus_sanguinis-0.0030.8870.935
speciesLactobacillus_amylovorus0.0030.8940.939
speciesPeptostreptococcus_stomatis0.0030.8950.939
speciesStreptococcus_mutans-0.0030.9050.947
speciesHoldemania_filiformis0.0030.9070.947
speciesBacteroides_caccae0.0030.9090.947
speciesBacteroides_finegoldii0.0020.9210.958
speciesLactococcus_phage_bIL670.0020.9270.961
genusErysipelotrichaceae_noname-0.0020.9280.961
orderActinomycetales-0.0020.9440.975
speciesLactococcus_phage_jm20.0010.9490.976
speciesBilophila_unclassified-0.0010.9490.976
speciesHoldemania_unclassified0.0010.9540.979
speciesRuminococcus_sp_5_1_39BFAA0.0010.9590.982
speciesRuminococcus_torques0.0010.9710.992
speciesBacteroides_xylanisolvens-0.0010.9760.995
genusBilophila-0.0010.9790.996
speciesSutterella_wadsworthensis0.00.9850.997
speciesCollinsella_aerofaciens0.00.9860.997
speciesLachnospiraceae_bacterium_2_1_46FAA0.00.9880.997
genusLeuconostoc0.00.990.997
speciesAlistipes_shahii0.00.9930.997
speciesAcidaminococcus_fermentans0.00.9940.997
familyPodoviridae0.00.9950.997
speciesMegasphaera_unclassified0.00.9980.998
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.05106033274950.06938881352660.00087194596757415605.15549
Crohns diseaseSpain17660.06169289193080.04617981343070.06027875780811215640.419
Type II diabetesDenmark752770.06010198438430.06688728172160.076348906636863528.305
Type II diabetesSweden53920.04626738048890.0591044592950.0774616066884296410.0373
Colorectal cancerAustria64350.05871463870590.03509100501770.163221830367727924.6278
ObesityDenmark1691230.06396613288620.07653513636050.2024536255851110936.5295
Ulcerative colitisSpain78660.05418687254020.04617981343070.4192198996461724056.8714
Rheumatoid arthritisChina127980.0674257366020.06604646461210.6652192378592150571.7144
Liver cirrhosisChina1201140.07488752007140.0631122507280.7128265319622685390.2046
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382