MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-06-29 18:39:26 PST
Job id & description: 2037, 22
Query type: protein
Count queries & homologs: 4, 6
Min % identity & max e-value: 80%, 1e-5
Min % query & target coverage: 80%, 80%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
2280073CompleteK01447COG0791;COG3103FirmicutesDorea100.099.49100.0
4308264CompleteK01447COG0791;COG3103FirmicutesBlautia100.0100.099.47
1307018CompleteK01447COG0791;COG3103FirmicutesDorea100.0100.096.96
1290025CompleteK01447COG0791;COG3103FirmicutesDorea100.096.8997.19
4429007Lack 5'-endK01447COG0791;COG3103FirmicutesBlautia86.64100.089.45
4579571Lack 3'-endK01447COG0791;COG3103FirmicutesBlautia86.24100.092.18
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusDorea0.8120.00.0
speciesDorea_formicigenerans0.7670.00.0
speciesDorea_longicatena0.6696.06e-2439.53e-241
speciesEubacterium_hallii0.5591.71e-1542.02e-152
orderCoriobacteriales0.5418.6e-1436.77e-141
familyCoriobacteriaceae0.5418.6e-1436.77e-141
speciesRuminococcus_sp_5_1_39BFAA0.5181.13e-1287.62e-127
speciesRuminococcus_obeum0.5099.09e-1245.36e-122
phylumBacteroidetes-0.4621.06e-994.55e-98
classBacteroidia-0.4621.06e-994.55e-98
orderBacteroidales-0.4621.06e-994.55e-98
phylumActinobacteria0.4574.04e-971.47e-95
classActinobacteria0.4574.04e-971.47e-95
phylumFirmicutes0.4546.14e-962.07e-94
classClostridia0.4492.22e-936.55e-92
orderClostridiales0.4492.22e-936.55e-92
speciesCoprococcus_comes0.4431.17e-903.25e-89
speciesEubacterium_ramulus0.4423.1e-908.13e-89
familyLachnospiraceae0.4395.3e-891.32e-87
genusBlautia0.4311.62e-853.82e-84
genusCollinsella0.4212.98e-816.7e-80
genusRuminococcus0.4184.6e-809.87e-79
speciesCoprococcus_catus0.4151.35e-782.77e-77
speciesAnaerostipes_hadrus0.4091.89e-763.72e-75
speciesRuminococcus_torques0.4086.59e-761.24e-74
speciesCollinsella_aerofaciens0.4071.18e-752.14e-74
genusCoprococcus0.3978.94e-721.56e-70
genusAnaerostipes0.3911.66e-692.8e-68
speciesLachnospiraceae_bacterium_5_1_63FAA0.3716.32e-621.03e-60
genusBifidobacterium0.3655.56e-608.75e-59
orderBifidobacteriales0.3648.67e-601.28e-58
familyBifidobacteriaceae0.3648.67e-601.28e-58
familyRuminococcaceae0.3611.47e-582.1e-57
familyBacteroidaceae-0.3443.51e-534.73e-52
genusBacteroides-0.3443.51e-534.73e-52
speciesBifidobacterium_adolescentis0.3375.8e-517.6e-50
genusAdlercreutzia0.3361.46e-501.81e-49
speciesAdlercreutzia_equolifaciens0.3361.46e-501.81e-49
speciesStreptococcus_thermophilus0.3292.13e-482.58e-47
speciesBifidobacterium_longum0.3161.04e-441.23e-43
familyEubacteriaceae0.3153.03e-443.49e-43
genusEubacterium0.3143.74e-444.2e-43
speciesEubacterium_rectale0.291.88e-372.06e-36
familyActinomycetaceae0.2876.59e-377.07e-36
genusActinomyces0.2852.35e-362.46e-35
speciesBacteroides_thetaiotaomicron-0.2838.64e-368.87e-35
genusLachnospiraceae_noname0.2751.01e-331.01e-32
genusGordonibacter0.2594.4e-304.24e-29
speciesGordonibacter_pamelaeae0.2594.4e-304.24e-29
speciesSubdoligranulum_unclassified0.2571.46e-291.38e-28
familyStreptococcaceae0.2562.31e-292.14e-28
speciesBlautia_hydrogenotrophica0.2553.65e-293.31e-28
genusSubdoligranulum0.2539.11e-298.11e-28
speciesClostridium_leptum0.2522.2e-281.92e-27
genusStreptococcus0.255.01e-284.3e-27
orderLactobacillales0.2463.05e-272.57e-26
classBacilli0.2463.1e-272.57e-26
classErysipelotrichia0.2455.17e-274.07e-26
orderErysipelotrichales0.2455.17e-274.07e-26
familyErysipelotrichaceae0.2455.17e-274.07e-26
orderActinomycetales0.2414.18e-263.23e-25
speciesDorea_unclassified-0.2358.83e-256.72e-24
speciesEggerthella_lenta0.2341.03e-247.72e-24
genusErysipelotrichaceae_noname0.2291.2e-238.85e-23
speciesLachnospiraceae_bacterium_6_1_63FAA0.2198.02e-225.82e-21
genusParabacteroides-0.2198.67e-226.2e-21
speciesErysipelotrichaceae_bacterium_21_30.2181.79e-211.26e-20
speciesRuminococcus_bromii0.2155.78e-214.01e-20
speciesStreptococcus_sanguinis0.2147.28e-214.98e-20
speciesEubacterium_ventriosum0.2149.72e-216.55e-20
speciesLactococcus_lactis0.2131.38e-209.17e-20
familyBacillales_noname0.2113.08e-201.99e-19
genusGemella0.2113.08e-201.99e-19
familyPeptostreptococcaceae0.2081.14e-197.27e-19
speciesBacteroides_xylanisolvens-0.2062.16e-191.36e-18
orderBacillales0.22.37e-181.47e-17
genusLactococcus0.22.95e-181.81e-17
genusPeptostreptococcaceae_noname0.1993.62e-182.19e-17
genusSolobacterium0.1961.28e-177.55e-17
speciesSolobacterium_moorei0.1961.28e-177.55e-17
speciesOlsenella_unclassified0.1952.11e-171.23e-16
speciesStreptococcus_parasanguinis0.1942.61e-171.5e-16
speciesBifidobacterium_bifidum0.1919.69e-175.51e-16
speciesBifidobacterium_animalis0.191.03e-165.79e-16
genusOlsenella0.1891.57e-168.72e-16
speciesStreptococcus_salivarius0.1891.92e-161.05e-15
familyPorphyromonadaceae-0.1882.61e-161.41e-15
speciesBacteroides_stercoris-0.1882.63e-161.41e-15
phylumViruses_noname0.1856.91e-163.62e-15
classViruses_noname0.1856.91e-163.62e-15
speciesKlebsiella_pneumoniae-0.1841.02e-155.29e-15
genusEggerthella0.1821.82e-159.34e-15
speciesPropionibacterium_freudenreichii0.1761.91e-149.69e-14
speciesBifidobacterium_catenulatum0.1752.69e-141.35e-13
familySiphoviridae0.1734.49e-142.23e-13
speciesLachnospiraceae_bacterium_3_1_46FAA0.1726.4e-143.15e-13
speciesLactobacillus_casei_paracasei0.1718.4e-144.09e-13
speciesLachnospiraceae_bacterium_1_4_56FAA0.171.42e-136.84e-13
speciesErysipelotrichaceae_bacterium_2_2_44A0.1691.65e-137.87e-13
speciesHaemophilus_parainfluenzae-0.1691.87e-138.83e-13
genusLeuconostoc0.1682.5e-131.17e-12
orderCaudovirales0.1682.94e-131.36e-12
genusHaemophilus-0.1673.23e-131.48e-12
phylumProteobacteria-0.1665.02e-132.28e-12
genusPropionibacterium0.1665.48e-132.46e-12
speciesClostridium_bartlettii0.1656.48e-132.89e-12
speciesEggerthella_unclassified0.1657.43e-133.28e-12
orderPasteurellales-0.1649.13e-133.95e-12
familyPasteurellaceae-0.1649.13e-133.95e-12
speciesErysipelotrichaceae_bacterium_6_1_450.1649.59e-134.11e-12
genusKlebsiella-0.1641.09e-124.63e-12
speciesBacteroides_nordii-0.1631.31e-125.52e-12
phylumEuryarchaeota0.1621.91e-127.98e-12
genusC2likevirus0.1621.96e-128.12e-12
speciesMethanobrevibacter_smithii0.163.23e-121.33e-11
speciesOdoribacter_unclassified0.163.6e-121.46e-11
speciesC2likevirus_unclassified0.1585.55e-122.24e-11
speciesPrevotella_buccae-0.1585.77e-122.31e-11
speciesEubacterium_siraeum0.1587.41e-122.94e-11
genusPeptostreptococcus0.1578.81e-123.47e-11
speciesPeptostreptococcaceae_noname_unclassified0.1561.02e-113.98e-11
genusMethanobrevibacter0.1542.26e-118.74e-11
speciesBacteroides_ovatus-0.1524.54e-111.74e-10
classMethanobacteria0.1514.87e-111.82e-10
orderMethanobacteriales0.1514.87e-111.82e-10
familyMethanobacteriaceae0.1514.87e-111.82e-10
speciesLactobacillus_rhamnosus0.1515.43e-112.02e-10
speciesFusobacterium_mortiferum-0.1481.15e-104.24e-10
familyPropionibacteriaceae0.1481.25e-104.57e-10
familyClostridiales_Family_XI_Incertae_Sedis0.1471.81e-106.57e-10
genusDialister0.1461.96e-107.06e-10
speciesBacteroides_intestinalis-0.1462.4e-108.58e-10
genusSiphoviridae_noname0.1453.38e-101.2e-09
speciesStreptococcus_australis0.1444.15e-101.46e-09
speciesEubacterium_biforme0.1435.69e-101.99e-09
genusMitsuokella0.1417.96e-102.76e-09
familyLactobacillaceae0.1418.13e-102.8e-09
speciesLactobacillus_delbrueckii0.141.14e-093.9e-09
classBetaproteobacteria-0.141.19e-094.04e-09
speciesPrevotella_stercorea-0.1391.59e-095.32e-09
familyRikenellaceae-0.1391.6e-095.32e-09
genusAlistipes-0.1391.6e-095.32e-09
speciesEubacterium_cylindroides0.1381.99e-096.56e-09
speciesMitsuokella_unclassified0.1382e-096.56e-09
genusTuricibacter0.1372.51e-098.17e-09
orderBurkholderiales-0.1363.5e-091.13e-08
genusPrevotella-0.1363.97e-091.27e-08
speciesStreptococcus_vestibularis0.1363.97e-091.27e-08
genusHoldemania0.1364e-091.27e-08
familyFusobacteriaceae-0.1354.08e-091.28e-08
phylumFusobacteria-0.1354.19e-091.29e-08
classFusobacteriia-0.1354.19e-091.29e-08
orderFusobacteriales-0.1354.19e-091.29e-08
speciesStreptococcus_mutans0.1354.37e-091.34e-08
genusLactobacillus0.1338.6e-092.62e-08
genusFusobacterium-0.1311.23e-083.72e-08
speciesEubacterium_dolichum0.1311.34e-084.03e-08
speciesTuricibacter_sanguinis0.131.73e-085.17e-08
speciesOdoribacter_splanchnicus-0.131.79e-085.31e-08
genusPseudoflavonifractor0.1292.33e-086.83e-08
speciesPseudoflavonifractor_capillosus0.1292.33e-086.83e-08
orderViruses_noname0.1282.63e-087.66e-08
classGammaproteobacteria-0.1282.77e-088.02e-08
speciesBacteroides_vulgatus-0.1273.24e-089.32e-08
speciesBacteroides_fragilis-0.1273.73e-081.07e-07
phylumVerrucomicrobia0.1264.1e-081.13e-07
classVerrucomicrobiae0.1264.1e-081.13e-07
orderVerrucomicrobiales0.1264.1e-081.13e-07
familyVerrucomicrobiaceae0.1264.1e-081.13e-07
genusAkkermansia0.1264.1e-081.13e-07
speciesAkkermansia_muciniphila0.1264.1e-081.13e-07
familySutterellaceae-0.1264.71e-081.29e-07
speciesDialister_invisus0.1264.75e-081.29e-07
speciesAnaerotruncus_unclassified0.1264.76e-081.29e-07
speciesTuricibacter_unclassified0.1255.21e-081.41e-07
genusParvimonas0.1255.82e-081.56e-07
speciesParvimonas_unclassified0.1255.93e-081.58e-07
speciesEnterococcus_faecium0.1256.62e-081.76e-07
speciesGemella_morbillorum0.1239.68e-082.55e-07
genusButyrivibrio0.1231e-072.62e-07
speciesButyrivibrio_unclassified0.1221.12e-072.92e-07
speciesStreptococcus_mitis_oralis_pneumoniae0.1211.51e-073.92e-07
familyLeuconostocaceae0.1211.52e-073.92e-07
speciesStreptococcus_gordonii0.1211.54e-073.95e-07
speciesVeillonella_dispar-0.1211.56e-073.98e-07
speciesVeillonella_atypica-0.1211.68e-074.26e-07
speciesFusobacterium_ulcerans-0.1192.32e-075.86e-07
familyEnterococcaceae0.1182.98e-077.48e-07
speciesRuminococcus_sp_JC3040.1183.09e-077.72e-07
speciesParabacteroides_goldsteinii-0.1183.12e-077.75e-07
genusEnterococcus0.1174.12e-071.02e-06
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1174.19e-071.03e-06
speciesLactobacillus_plantarum0.1174.25e-071.04e-06
genusMegamonas-0.1165.29e-071.29e-06
speciesMegamonas_unclassified-0.1165.41e-071.31e-06
speciesVeillonella_unclassified-0.1139.04e-072.18e-06
genusMegasphaera-0.1121.27e-063.04e-06
genusRothia0.1111.34e-063.19e-06
speciesRuminococcus_lactaris0.1111.37e-063.25e-06
familyMicrococcaceae0.1111.46e-063.45e-06
genusOdoribacter-0.1111.64e-063.85e-06
speciesClostridium_nexile-0.111.69e-063.95e-06
speciesMegasphaera_micronuciformis-0.1092.11e-064.91e-06
speciesBacteroides_oleiciplenus-0.1092.3e-065.32e-06
speciesAcidaminococcus_unclassified0.1083.08e-067.09e-06
speciesLachnospiraceae_bacterium_7_1_58FAA0.1073.4e-067.79e-06
familyAcidaminococcaceae0.1073.43e-067.82e-06
speciesHoldemania_filiformis0.1073.59e-068.15e-06
speciesMegamonas_funiformis-0.1064.38e-069.89e-06
familyPrevotellaceae-0.1064.63e-061.04e-05
speciesLachnospiraceae_bacterium_1_1_57FAA0.1064.74e-061.06e-05
speciesPeptostreptococcus_stomatis0.1055.58e-061.24e-05
speciesLactococcus_phage_P6800.1046.36e-061.41e-05
orderEnterobacteriales-0.1047.1e-061.56e-05
familyEnterobacteriaceae-0.1047.1e-061.56e-05
speciesPrevotella_copri-0.1047.16e-061.56e-05
speciesOdoribacter_laneus0.1038.06e-061.75e-05
speciesBlautia_producta0.1038.87e-061.92e-05
speciesRoseburia_intestinalis0.1011.11e-052.39e-05
speciesHoldemania_unclassified0.1011.23e-052.64e-05
speciesParabacteroides_merdae-0.11.36e-052.9e-05
genusVeillonella-0.11.57e-053.34e-05
speciesAlistipes_shahii-0.0991.72e-053.64e-05
speciesMethanobrevibacter_unclassified0.0991.92e-054.05e-05
genusRuminococcaceae_noname0.0982.27e-054.74e-05
speciesRuminococcaceae_bacterium_D160.0982.27e-054.74e-05
speciesBacteroides_salyersiae-0.0972.53e-055.26e-05
speciesEggerthella_sp_1_3_56FAA0.0972.79e-055.78e-05
speciesBacteroides_finegoldii-0.0972.91e-056e-05
speciesBacteroides_plebeius-0.0953.96e-058.13e-05
speciesRothia_mucilaginosa0.0935.28e-050.000108
speciesCoprococcus_sp_ART55_10.0935.63e-050.000115
speciesLactobacillus_salivarius-0.0927.02e-050.000142
genusEscherichia-0.0918.46e-050.000171
speciesEscherichia_coli-0.099.43e-050.000189
genusCatenibacterium0.099.68e-050.000193
speciesCatenibacterium_mitsuokai0.099.68e-050.000193
speciesCoprobacillus_sp_D60.090.0001010.0002
genusParasutterella-0.0890.0001070.00021
speciesParasutterella_excrementihominis-0.0890.0001070.00021
genusAnaerotruncus0.0890.0001160.000227
genusBarnesiella0.0890.0001170.000227
speciesBarnesiella_intestinihominis0.0890.0001170.000227
speciesVeillonella_parvula-0.0880.0001470.000284
speciesMegamonas_rupellensis-0.0870.0001780.000343
genusCoriobacteriaceae_noname0.0860.0002070.000397
speciesRoseburia_hominis0.0840.0002890.000552
speciesClostridium_bolteae-0.0840.00030.000571
speciesCoriobacteriaceae_bacterium_phI0.0820.0003920.000743
speciesStreptococcus_anginosus0.0820.0004010.000757
speciesMegamonas_hypermegale-0.0810.0004380.000824
speciesLachnospiraceae_bacterium_8_1_57FAA0.0810.0004470.000837
speciesBacteroides_cellulosilyticus-0.0810.0004660.000869
speciesLachnospiraceae_bacterium_2_1_58FAA0.0810.0004870.000905
speciesAlistipes_finegoldii-0.080.0005360.000992
speciesEnterobacter_cloacae-0.080.0005540.00102
speciesLachnospiraceae_bacterium_5_1_57FAA0.080.0005630.00103
speciesLactococcus_phage_bIL670.080.0005710.00104
genusMethanosphaera0.080.0005730.00104
speciesMethanosphaera_stadtmanae0.080.0005730.00104
speciesPeptostreptococcus_anaerobius0.0790.0005920.00107
genusEnterobacter-0.0790.0006370.00115
genusPeptoniphilus0.0790.0006390.00115
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0780.0006880.00123
genusFaecalibacterium0.0780.0006930.00123
speciesFaecalibacterium_prausnitzii0.0780.0006930.00123
speciesStreptococcus_phage_Sfi210.0780.0006960.00123
speciesParabacteroides_distasonis-0.0780.0007470.00132
genusBurkholderiales_noname-0.0770.0008440.00148
speciesBurkholderiales_bacterium_1_1_47-0.0770.0008440.00148
speciesLactobacillus_acidophilus0.0770.0008750.00152
speciesClostridium_hathewayi-0.0770.0009280.00161
genusButyricimonas-0.0760.001050.0018
genusPyramidobacter-0.0760.001050.0018
speciesButyricimonas_synergistica-0.0760.001050.0018
speciesPyramidobacter_piscolens-0.0760.001050.0018
speciesBacteroides_dorei-0.0750.001110.00189
orderPseudomonadales0.0750.001130.00192
familyBurkholderiales_noname-0.0750.001150.00195
genusPhascolarctobacterium0.0750.001160.00195
speciesPhascolarctobacterium_succinatutens0.0750.001160.00195
phylumSynergistetes-0.0750.001240.00205
classSynergistia-0.0750.001240.00205
orderSynergistales-0.0750.001240.00205
familySynergistaceae-0.0750.001240.00205
speciesClostridium_symbiosum-0.0740.001360.00224
speciesClostridiales_bacterium_1_7_47FAA-0.0730.001560.00257
classDeltaproteobacteria-0.0730.001690.00275
orderDesulfovibrionales-0.0730.001690.00275
familyDesulfovibrionaceae-0.0730.001690.00275
speciesBacteroides_caccae-0.0720.001920.00311
speciesAlistipes_putredinis-0.0710.002160.00349
speciesClostridium_sp_L2_500.070.002460.00396
speciesSlackia_piriformis0.0690.002870.00461
speciesSutterella_wadsworthensis0.0690.002880.00461
speciesDialister_succinatiphilus0.0680.003260.0052
speciesBacteroides_massiliensis-0.0670.003540.00563
speciesPorphyromonas_asaccharolytica0.0670.004010.00635
speciesBacteroides_uniformis-0.0660.004020.00635
speciesAlistipes_unclassified0.0660.004290.00675
speciesLactobacillus_mucosae-0.0650.004620.00724
genusAcidaminococcus0.0650.004660.00728
speciesKlebsiella_unclassified-0.0650.004880.0076
speciesBilophila_unclassified-0.0640.005290.00821
speciesSubdoligranulum_sp_4_3_54A2FAA0.0640.005450.00843
speciesLactobacillus_gasseri0.0640.005570.00859
speciesErysipelotrichaceae_bacterium_3_1_530.0640.005810.00893
speciesClostridium_citroniae-0.0630.006030.00924
genusPorphyromonas0.0630.006510.00994
speciesClostridium_asparagiforme-0.0630.006580.01
speciesRoseburia_inulinivorans0.0630.00670.0102
genusBilophila-0.0620.006880.0104
familyStaphylococcaceae0.0620.007050.0106
genusRoseburia0.0610.008560.0129
speciesKlebsiella_phage_KP36-0.0610.008620.0129
genusSlackia0.060.00960.0143
speciesCampylobacter_concisus-0.060.009950.0148
speciesMegasphaera_unclassified-0.0590.01030.0153
genusAcidaminococcaceae_unclassified0.0590.01060.0157
speciesRuminococcus_callidus0.0590.01110.0164
genusSutterella0.0580.01160.0171
familyOscillospiraceae-0.0560.01470.0215
genusOscillibacter-0.0560.01470.0215
speciesParabacteroides_unclassified-0.0560.01490.0217
speciesClostridium_spiroforme0.0560.01580.0229
genusSutterellaceae_unclassified-0.0550.01670.0242
speciesBifidobacterium_dentium0.0540.01860.0268
speciesFusobacterium_varium-0.0540.0190.0273
speciesBacteroides_sp_3_1_19-0.0540.01920.0275
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0530.0210.03
speciesOscillibacter_sp_KLE_1728-0.0530.02220.0317
genusCoprobacter0.0530.02270.0322
speciesCoprobacter_fastidiosus0.0530.02270.0322
speciesStreptococcus_pasteurianus-0.0520.02440.0344
speciesLactococcus_phage_jm20.0520.02440.0344
genusStaphylococcus0.0520.02540.0357
speciesMitsuokella_multacida0.0510.02650.0371
genusActinobacillus-0.0510.02830.0393
speciesActinobacillus_unclassified-0.0510.02830.0393
speciesBilophila_wadsworthia-0.0510.02830.0393
genusClostridiales_noname-0.050.02910.0403
genusAggregatibacter-0.050.0310.0428
genusFlavonifractor-0.050.03180.0436
speciesFlavonifractor_plautii-0.050.03180.0436
genusTunalikevirus-0.0490.0330.0451
speciesButyrivibrio_crossotus0.0490.03440.0469
speciesLactococcus_phage_phi70.0480.03980.0541
speciesRuminococcus_champanellensis0.0470.04060.0551
speciesLactococcus_phage_936_sensu_lato0.0460.04790.0648
speciesCoprobacillus_sp_29_10.0450.04960.0669
speciesAlistipes_sp_AP110.0450.05220.0702
speciesEnterococcus_faecalis0.0450.05330.0715
speciesBacteroides_coprocola-0.0440.05660.0757
speciesStreptococcus_lutetiensis0.0440.05930.0791
speciesOscillibacter_unclassified-0.0430.06020.08
speciesCitrobacter_unclassified-0.0430.06540.0867
speciesCitrobacter_freundii-0.0420.06770.0895
speciesWeissella_cibaria0.0410.07490.0988
speciesStreptococcus_infantarius-0.0410.07630.1
genusClostridiaceae_noname0.0410.07930.104
speciesClostridiaceae_bacterium_JC1180.0410.07930.104
speciesEubacterium_sp_3_1_310.040.08040.105
genusCampylobacter-0.040.08220.107
genusOxalobacter-0.040.08420.109
speciesOxalobacter_formigenes-0.040.08420.109
speciesEnterobacter_aerogenes-0.040.08540.11
genusPantoea-0.040.08690.111
speciesPantoea_unclassified-0.040.08690.111
familyViruses_noname0.0380.10.128
genusViruses_noname0.0380.10.128
classNegativicutes0.0370.1060.134
orderSelenomonadales0.0370.1060.134
speciesParabacteroides_sp_D13-0.0370.110.139
speciesBacteroides_coprophilus-0.0370.110.139
speciesAnaerostipes_unclassified-0.0370.1140.143
classEpsilonproteobacteria-0.0360.1150.144
orderCampylobacterales-0.0360.1150.144
speciesBifidobacterium_angulatum0.0360.1170.146
speciesLactobacillus_sanfranciscensis0.0360.120.149
speciesBacteroides_pectinophilus0.0360.1210.15
familyCampylobacteraceae-0.0360.1220.151
familyOxalobacteraceae-0.0360.1230.152
speciesCoprococcus_eutactus0.0350.1290.159
speciesRoseburia_unclassified0.0350.1310.161
speciesHaemophilus_sputorum-0.0350.1350.166
speciesLactobacillus_reuteri0.0340.1460.179
speciesSutterella_parvirubra-0.0340.1470.179
speciesBacteroides_salanitronis0.0330.1490.181
genusMorganella0.0330.1570.19
speciesMorganella_morganii0.0330.1570.19
speciesClostridium_perfringens-0.0320.1630.197
speciesAcidaminococcus_fermentans-0.0320.1640.197
speciesClostridium_clostridioforme-0.0320.1680.202
genusCitrobacter-0.0320.1690.202
speciesEubacterium_limosum0.0320.1690.202
speciesHaemophilus_paraphrohaemolyticus-0.0310.1740.207
speciesKlebsiella_sp_MS_92_30.0310.1770.21
genusButyricicoccus0.0310.180.213
speciesButyricicoccus_pullicaecorum0.0310.180.213
speciesAlistipes_sp_HGB5-0.0310.1820.215
genusCoprobacillus0.0310.1840.217
speciesFusobacterium_nucleatum-0.030.1990.232
speciesHoldemania_sp_AP20.030.1990.232
speciesClostridium_sp_ATCC_BAA_442-0.030.1990.232
familyClostridiales_noname-0.0290.2070.241
speciesCollinsella_intestinalis0.0290.2160.251
speciesAnaerotruncus_colihominis0.0290.2170.252
speciesParabacteroides_sp_20_30.0270.2380.275
speciesAcidaminococcus_intestini0.0270.240.277
speciesEubacterium_eligens-0.0260.2610.3
speciesBacteroides_eggerthii-0.0260.2690.309
speciesLactobacillus_amylovorus0.0250.2740.314
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0240.2960.338
speciesAggregatibacter_segnis-0.0240.3070.35
speciesMegasphaera_elsdenii-0.0230.3110.354
speciesAlistipes_onderdonkii-0.0230.3250.369
speciesParaprevotella_clara0.0230.3270.37
genusParaprevotella0.0220.3450.39
familyBacteroidales_noname0.0220.3520.395
genusBacteroidales_noname0.0220.3520.395
speciesBacteroidales_bacterium_ph80.0220.3520.395
genusMyoviridae_noname0.0210.3540.396
speciesParaprevotella_unclassified0.0210.360.402
speciesBacteroides_barnesiae0.0210.3630.404
speciesEscherichia_unclassified-0.020.3850.428
speciesLeuconostoc_lactis0.020.3870.429
speciesBacteroides_faecis-0.020.3920.433
speciesLactobacillus_ruminis0.0190.4150.458
speciesBifidobacterium_pseudocatenulatum0.0180.430.473
speciesBifidobacterium_breve0.0180.4320.474
speciesKlebsiella_oxytoca0.0180.4380.48
genusProteus-0.0170.4520.494
genusDesulfovibrio-0.0150.510.556
speciesParabacteroides_johnsonii-0.0150.5130.558
genusWeissella0.0150.5280.573
familyClostridiaceae0.0140.5350.579
speciesPrevotella_bivia0.0140.540.583
speciesRuminococcus_gnavus-0.0130.560.603
genusClostridium0.0130.5780.621
genusLambdalikevirus0.0120.5920.635
familyMyoviridae0.0120.6090.652
speciesClostridium_ramosum0.0120.6150.657
speciesLactobacillus_fermentum-0.0110.6230.664
orderAeromonadales-0.010.6770.72
speciesPorphyromonas_uenonis0.0090.6840.726
speciesBacteroides_sp_2_1_22-0.0090.6980.739
speciesLactococcus_garvieae0.0090.7050.744
speciesLactobacillus_oris0.0090.7130.751
speciesDesulfovibrio_desulfuricans0.0080.7150.752
speciesBacteroides_clarus0.0080.7250.76
speciesCollinsella_unclassified-0.0080.7340.768
speciesEnterobacteria_phage_HK544-0.0080.7380.771
speciesAlistipes_indistinctus-0.0070.7740.806
speciesBacteroides_fluxus-0.0070.7750.806
speciesLactobacillus_crispatus-0.0070.7790.808
speciesClostridium_sp_KLE_1755-0.0060.7870.814
familyPodoviridae0.0060.7890.814
speciesAlistipes_senegalensis-0.0060.790.814
speciesCollinsella_tanakaei-0.0060.7930.815
genusSuccinatimonas0.0050.8310.851
speciesSuccinatimonas_hippei0.0050.8310.851
speciesDesulfovibrio_piger-0.0050.8370.855
familySuccinivibrionaceae0.0040.8550.872
speciesProteus_mirabilis-0.0040.8630.876
speciesLactobacillus_vaginalis0.0040.8630.876
speciesOscillibacter_sp_KLE_1745-0.0040.8740.885
speciesBacteroides_sp_4_3_47FAA-0.0040.8790.888
speciesParaprevotella_xylaniphila0.0030.890.898
speciesWeissella_confusa-0.0030.9050.911
speciesBacteroides_sp_1_1_60.0020.9450.949
familyVeillonellaceae-0.0010.9620.964
speciesCoprobacillus_unclassified0.00.9840.984
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
ObesityDenmark1691230.001394335958120.0010037137410.0025443355261713154.32409
Crohns diseaseSpain17660.007227792868550.003585597840090.00827733541815775125.7722
Liver cirrhosisChina1201140.0005762425874970.0007136834721850.03726436568041369145.9908
Rheumatoid arthritisChina127980.001784639543730.002233395853060.0692675434246401313.3825
Type II diabetesSweden53920.006177919994950.004700914280270.126385410717450115.2421
Type II diabetesDenmark752770.001075334238550.001238638005860.7211832448672517482.5188
Ulcerative colitisSpain78660.003386649724710.003585597840090.8105970302932595085.604
Type II diabetesChina1831850.001442390864250.00121642907030.9770643255072990598.8301
Colorectal cancerAustria64350.005020397550970.005797324323761.02946999.7056
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382