MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-07-31 02:42:27 PST
Job id & description: 2055, E8
Query type: protein
Count queries & homologs: 1, 4
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
E8294340Completeunknownunknownunknownunknown100.0100.099.87
E8275395Completeunknownunknownunknownunknown95.8397.4552.25
E8278149Completeunknownunknownunknownunknown95.0596.9349.41
E8225052Completeunknownunknownunknownunknown91.892.5931.21
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesBacteroides_fragilis0.3551.09e-565.14e-54
speciesClostridium_nexile0.1952.01e-174.74e-15
speciesLactobacillus_salivarius0.183.92e-156.17e-13
speciesVeillonella_dispar0.1761.5e-141.77e-12
phylumFusobacteria0.1743.24e-142.18e-12
classFusobacteriia0.1743.24e-142.18e-12
orderFusobacteriales0.1743.24e-142.18e-12
genusFusobacterium0.1735.31e-143.13e-12
familyFusobacteriaceae0.1718.64e-144.53e-12
speciesBacteroides_thetaiotaomicron0.171.21e-135.71e-12
speciesFusobacterium_mortiferum0.1673.2e-131.37e-11
speciesSubdoligranulum_unclassified-0.1631.46e-125.74e-11
genusSubdoligranulum-0.1621.7e-126.17e-11
speciesPrevotella_buccae0.163.18e-121.07e-10
speciesVeillonella_atypica0.163.63e-121.14e-10
speciesRuminococcus_gnavus0.1579.89e-122.92e-10
genusVeillonella0.1561.11e-113.08e-10
speciesVeillonella_parvula0.1498.7e-112.28e-09
speciesClostridium_symbiosum0.1481.24e-103.03e-09
speciesKlebsiella_pneumoniae0.1481.3e-103.03e-09
speciesCampylobacter_concisus0.1481.35e-103.03e-09
speciesVeillonella_unclassified0.1471.47e-103.15e-09
phylumProteobacteria0.1461.98e-104.06e-09
speciesMegasphaera_micronuciformis0.1462.13e-104.19e-09
genusKlebsiella0.1452.68e-105.06e-09
speciesClostridium_hathewayi0.1453.03e-105.5e-09
genusCoprococcus-0.1434.92e-108.6e-09
familyBacteroidaceae0.1426.47e-101.05e-08
genusBacteroides0.1426.47e-101.05e-08
speciesFusobacterium_ulcerans0.1382.3e-093.62e-08
classGammaproteobacteria0.1372.65e-094.03e-08
speciesClostridium_bolteae0.1336.96e-091.03e-07
genusMegasphaera0.1311.24e-081.77e-07
speciesCoprococcus_comes-0.131.6e-082.22e-07
speciesBifidobacterium_adolescentis-0.131.78e-082.4e-07
genusEscherichia0.131.89e-082.48e-07
speciesEscherichia_coli0.1264.06e-085.18e-07
orderCoriobacteriales-0.1264.5e-085.32e-07
familyCoriobacteriaceae-0.1264.5e-085.32e-07
genusCampylobacter0.1264.51e-085.32e-07
genusDorea-0.1255.71e-086.57e-07
orderEnterobacteriales0.1256.19e-086.79e-07
familyEnterobacteriaceae0.1256.19e-086.79e-07
speciesCollinsella_aerofaciens-0.1247.1e-087.62e-07
familyCampylobacteraceae0.1247.88e-088.27e-07
speciesBacteroides_oleiciplenus0.1231.01e-071.04e-06
genusCollinsella-0.1221.28e-071.29e-06
genusHaemophilus0.1211.6e-071.57e-06
speciesFusobacterium_nucleatum0.121.73e-071.63e-06
speciesHaemophilus_parainfluenzae0.1211.73e-071.63e-06
speciesBacteroides_intestinalis0.121.82e-071.68e-06
orderPasteurellales0.1192.6e-072.32e-06
familyPasteurellaceae0.1192.6e-072.32e-06
speciesCoprococcus_catus-0.1174e-073.5e-06
speciesClostridiales_bacterium_1_7_47FAA0.1174.26e-073.66e-06
classEpsilonproteobacteria0.1165.11e-074.23e-06
orderCampylobacterales0.1165.11e-074.23e-06
speciesDorea_longicatena-0.1156e-074.88e-06
genusCitrobacter0.1147.62e-076.1e-06
speciesLactobacillus_mucosae0.1111.65e-061.3e-05
speciesClostridium_perfringens0.1092.26e-061.75e-05
speciesAggregatibacter_segnis0.1073.62e-062.72e-05
speciesFusobacterium_varium0.1073.63e-062.72e-05
genusFlavonifractor0.1055.22e-063.79e-05
speciesFlavonifractor_plautii0.1055.22e-063.79e-05
speciesPrevotella_stercorea0.1046.26e-064.44e-05
speciesParaprevotella_xylaniphila-0.1046.3e-064.44e-05
speciesBacteroides_ovatus0.1046.44e-064.47e-05
speciesBifidobacterium_animalis-0.1046.6e-064.51e-05
genusAggregatibacter0.1046.91e-064.66e-05
genusEnterobacter0.1037.47e-064.97e-05
speciesParaprevotella_unclassified-0.1038.6e-065.64e-05
classBacteroidia0.1011.25e-057.93e-05
orderBacteroidales0.1011.25e-057.93e-05
phylumBacteroidetes0.1011.26e-057.93e-05
genusButyrivibrio-0.1011.3e-058.07e-05
genusParaprevotella-0.11.48e-058.9e-05
classClostridia-0.11.49e-058.9e-05
orderClostridiales-0.11.49e-058.9e-05
familyClostridiaceae0.11.56e-059.09e-05
familyRuminococcaceae-0.11.58e-059.09e-05
speciesParaprevotella_clara-0.11.58e-059.09e-05
familySiphoviridae-0.0991.68e-059.55e-05
speciesCitrobacter_unclassified0.0982.06e-050.000116
speciesEnterobacter_cloacae0.0982.11e-050.000117
speciesStreptococcus_salivarius0.0982.18e-050.00012
genusClostridium0.0982.28e-050.000124
phylumActinobacteria-0.0972.5e-050.000133
classActinobacteria-0.0972.5e-050.000133
speciesLachnospiraceae_bacterium_2_1_46FAA0.0972.66e-050.00014
speciesC2likevirus_unclassified-0.0963.15e-050.000163
genusC2likevirus-0.0944.83e-050.000248
speciesMegamonas_unclassified0.0935.96e-050.000302
speciesEscherichia_unclassified0.0926.35e-050.000315
genusPyramidobacter0.0926.4e-050.000315
speciesPyramidobacter_piscolens0.0926.4e-050.000315
genusMegamonas0.0926.63e-050.000323
speciesEubacterium_siraeum-0.0918.64e-050.000416
speciesEubacterium_ramulus-0.099.64e-050.000457
speciesRuminococcus_sp_5_1_39BFAA-0.099.69e-050.000457
speciesEnterobacter_aerogenes0.090.0001010.000467
speciesParabacteroides_distasonis0.090.0001010.000467
speciesEubacterium_hallii-0.090.0001030.000472
genusCoprobacillus0.0890.0001080.00049
speciesHaemophilus_paraphrohaemolyticus0.0890.000110.000494
genusAdlercreutzia-0.0890.0001170.000516
speciesAdlercreutzia_equolifaciens-0.0890.0001170.000516
speciesAcidaminococcus_fermentans0.0870.0001540.000673
speciesBacteroides_nordii0.0870.0001610.000691
speciesCoprobacillus_unclassified0.0870.0001610.000691
genusBarnesiella-0.0870.0001790.000754
speciesBarnesiella_intestinihominis-0.0870.0001790.000754
speciesStreptococcus_anginosus0.0860.0001890.000789
genusRuminococcus-0.0860.0001920.000795
phylumFirmicutes-0.0860.0001970.000809
speciesBifidobacterium_pseudocatenulatum0.0860.0002020.000822
speciesLactococcus_lactis-0.0860.0002130.000859
speciesClostridium_leptum-0.0850.0002170.000868
phylumSynergistetes0.0850.0002280.000882
classSynergistia0.0850.0002280.000882
orderSynergistales0.0850.0002280.000882
familySynergistaceae0.0850.0002280.000882
speciesDorea_formicigenerans-0.0850.000240.000921
speciesMitsuokella_unclassified-0.0850.0002530.000959
speciesMethanobrevibacter_smithii-0.0850.0002540.000959
speciesStreptococcus_thermophilus-0.0840.0002560.000959
genusParabacteroides0.0840.0002650.000985
speciesClostridium_citroniae0.0840.0002760.00102
speciesStreptococcus_pasteurianus0.0840.0002840.00104
speciesClostridium_sp_ATCC_BAA_4420.0830.0003170.00115
speciesStreptococcus_infantarius0.0830.0003420.00123
genusClostridiales_noname0.0820.0003610.00129
speciesBacteroides_xylanisolvens0.0820.0004130.00146
familyBurkholderiales_noname0.0820.0004150.00146
genusBurkholderiales_noname0.0810.0004320.0015
speciesBurkholderiales_bacterium_1_1_470.0810.0004320.0015
phylumEuryarchaeota-0.0810.0004420.00152
speciesKlebsiella_unclassified0.0810.0004460.00153
genusPhascolarctobacterium-0.0810.0004850.00164
speciesPhascolarctobacterium_succinatutens-0.0810.0004850.00164
speciesButyrivibrio_crossotus-0.080.0005380.0018
speciesLactobacillus_vaginalis0.080.0005410.0018
speciesCitrobacter_freundii0.0790.0005820.00192
classMethanobacteria-0.0790.0006410.00207
orderMethanobacteriales-0.0790.0006410.00207
familyMethanobacteriaceae-0.0790.0006410.00207
speciesHaemophilus_sputorum0.0790.0006450.00207
genusMethanobrevibacter-0.0790.000670.00214
speciesAnaerotruncus_unclassified-0.0780.0007450.00236
speciesLachnospiraceae_bacterium_5_1_57FAA0.0770.0008450.00266
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0770.0008790.00274
genusPseudoflavonifractor-0.0770.0008890.00274
speciesPseudoflavonifractor_capillosus-0.0770.0008890.00274
speciesRuminococcus_obeum-0.0770.0009020.00276
speciesOlsenella_unclassified-0.0760.0009370.00285
familyVeillonellaceae0.0760.0009780.00296
genusCatenibacterium-0.0760.0009940.00297
speciesCatenibacterium_mitsuokai-0.0760.0009940.00297
speciesDialister_succinatiphilus-0.0760.001080.00321
genusOlsenella-0.0740.001270.00375
familyClostridiales_noname0.0740.001440.00422
genusStreptococcus0.0740.001450.00422
speciesClostridium_asparagiforme0.0730.001480.00429
speciesOdoribacter_laneus-0.0730.001510.00435
speciesBacteroides_plebeius0.0730.001580.00452
genusMitsuokella-0.0730.001650.00469
speciesWeissella_confusa0.0730.001670.00472
genusWeissella0.0730.001680.00472
speciesBilophila_wadsworthia0.070.002350.00653
familyBacteroidales_noname-0.070.002380.00653
genusBacteroidales_noname-0.070.002380.00653
speciesBacteroidales_bacterium_ph8-0.070.002380.00653
speciesClostridium_ramosum0.070.00240.00655
speciesMegamonas_hypermegale0.070.002480.00673
speciesRoseburia_inulinivorans0.0690.002930.00788
speciesBifidobacterium_bifidum-0.0690.002940.00788
genusLactococcus-0.0690.003020.00805
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0680.003040.00806
speciesPrevotella_copri0.0680.00310.00817
orderBifidobacteriales-0.0680.003260.00845
familyBifidobacteriaceae-0.0680.003260.00845
genusBifidobacterium-0.0680.003260.00845
speciesPropionibacterium_freudenreichii-0.0680.003420.0088
familyStreptococcaceae0.0680.003430.0088
speciesLactobacillus_delbrueckii-0.0670.003570.00911
classBacilli0.0670.003590.00911
speciesAnaerostipes_hadrus-0.0670.003860.00974
classBetaproteobacteria0.0660.004090.0103
orderCaudovirales-0.0650.004790.012
genusCoprobacter-0.0650.00490.0121
speciesCoprobacter_fastidiosus-0.0650.00490.0121
speciesMegasphaera_unclassified0.0650.005030.0124
speciesMegamonas_rupellensis0.0640.00530.0129
genusRuminococcaceae_noname-0.0640.005310.0129
speciesRuminococcaceae_bacterium_D16-0.0640.005310.0129
orderBurkholderiales0.0640.005430.0131
genusPrevotella0.0640.005650.0135
speciesAlistipes_senegalensis-0.0630.006170.0147
speciesEnterobacteria_phage_HK5440.0630.006380.0151
speciesBacteroides_coprocola0.0630.006450.0152
genusActinobacillus0.0630.00660.0154
speciesActinobacillus_unclassified0.0630.00660.0154
genusDesulfovibrio-0.0620.007430.0173
genusDialister-0.0620.007640.0173
genusBilophila0.0620.007710.0173
phylumVerrucomicrobia-0.0620.007740.0173
classVerrucomicrobiae-0.0620.007740.0173
orderVerrucomicrobiales-0.0620.007740.0173
familyVerrucomicrobiaceae-0.0620.007740.0173
genusAkkermansia-0.0620.007740.0173
speciesAkkermansia_muciniphila-0.0620.007740.0173
speciesLachnospiraceae_bacterium_6_1_63FAA0.0610.00810.018
speciesBacteroides_salyersiae0.0610.008180.0181
speciesMegasphaera_elsdenii0.0610.008330.0184
speciesBilophila_unclassified0.060.009330.0205
speciesCoprococcus_eutactus-0.060.009680.0212
speciesBifidobacterium_dentium0.060.009740.0212
speciesBacteroides_stercoris0.060.009920.0215
speciesParabacteroides_goldsteinii0.0590.01120.0241
speciesBifidobacterium_longum-0.0580.01160.0249
speciesRoseburia_unclassified-0.0580.01250.0267
orderLactobacillales0.0580.01280.0271
speciesLactobacillus_oris0.0580.01280.0271
familyLachnospiraceae-0.0570.01320.0278
familyPorphyromonadaceae0.0570.01380.0288
speciesBlautia_hydrogenotrophica-0.0570.01380.0288
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0570.01410.0293
speciesEubacterium_eligens0.0570.01440.0298
speciesStreptococcus_mutans0.0560.0160.033
speciesDesulfovibrio_piger-0.0550.01740.0357
speciesCollinsella_tanakaei0.0550.01750.0358
genusRoseburia0.0550.01770.036
speciesLactococcus_phage_P680-0.0550.01810.0367
speciesCoprococcus_sp_ART55_1-0.0540.01940.0391
speciesBacteroides_vulgatus0.0540.02050.0412
speciesWeissella_cibaria0.0530.02120.0422
speciesPeptostreptococcus_stomatis0.0530.02120.0422
familyPropionibacteriaceae-0.0530.02140.0424
speciesErysipelotrichaceae_bacterium_21_3-0.0530.02220.0438
familyAcidaminococcaceae-0.0520.02360.0464
genusProteus0.0520.02370.0464
speciesButyrivibrio_unclassified-0.0520.02420.0472
speciesProteus_mirabilis0.0520.02480.0482
speciesAcidaminococcus_intestini0.0520.02590.0501
speciesEggerthella_unclassified0.0510.02660.0512
speciesLachnospiraceae_bacterium_2_1_58FAA0.0510.02740.0526
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0510.02840.0543
speciesRuminococcus_bromii-0.0490.03240.0615
genusSiphoviridae_noname-0.0490.03270.0615
speciesMethanobrevibacter_unclassified-0.0490.03270.0615
speciesEubacterium_biforme-0.0490.03270.0615
speciesBacteroides_sp_1_1_60.0490.03320.0622
speciesBacteroides_cellulosilyticus0.0490.03370.0629
speciesLactobacillus_rhamnosus-0.0490.03470.0645
speciesLachnospiraceae_bacterium_1_1_57FAA0.0480.03660.0677
speciesBacteroides_pectinophilus-0.0480.03990.0736
classErysipelotrichia-0.0470.04270.0775
orderErysipelotrichales-0.0470.04270.0775
familyErysipelotrichaceae-0.0470.04270.0775
genusErysipelotrichaceae_noname-0.0470.04270.0775
speciesBifidobacterium_catenulatum-0.0460.04630.0837
genusClostridiaceae_noname0.0460.04860.0872
speciesClostridiaceae_bacterium_JC1180.0460.04860.0872
genusFaecalibacterium0.0450.0530.0944
speciesFaecalibacterium_prausnitzii0.0450.0530.0944
genusAnaerotruncus-0.0450.05430.096
speciesDesulfovibrio_desulfuricans-0.0450.05430.096
genusMethanosphaera-0.0440.05480.0962
speciesMethanosphaera_stadtmanae-0.0440.05480.0962
genusAnaerostipes-0.0440.05790.101
speciesLactobacillus_crispatus0.0430.06040.105
phylumViruses_noname-0.0430.06170.107
classViruses_noname-0.0430.06170.107
speciesStreptococcus_parasanguinis0.0430.06490.112
speciesClostridium_spiroforme-0.0420.0680.117
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0420.06870.117
genusParasutterella0.0420.06990.119
speciesParasutterella_excrementihominis0.0420.06990.119
familyPeptostreptococcaceae0.0420.07010.119
familySuccinivibrionaceae-0.0410.07460.126
speciesRuminococcus_torques-0.0410.07610.128
speciesClostridium_sp_L2_50-0.0410.07680.128
classDeltaproteobacteria0.0410.0770.128
orderDesulfovibrionales0.0410.0770.128
familyDesulfovibrionaceae0.0410.0770.128
familySutterellaceae0.0410.07730.128
familyStaphylococcaceae0.040.08060.132
speciesKlebsiella_oxytoca0.040.08060.132
genusEggerthella0.040.08130.133
genusSuccinatimonas-0.040.08490.138
speciesSuccinatimonas_hippei-0.040.08490.138
speciesStreptococcus_mitis_oralis_pneumoniae0.040.08510.138
genusLactobacillus0.040.08560.138
speciesMitsuokella_multacida-0.0390.08970.144
familyLactobacillaceae0.0390.09190.147
speciesSutterella_wadsworthensis-0.0390.09470.151
speciesAlistipes_finegoldii-0.0390.09590.152
speciesAnaerostipes_unclassified0.0380.09620.152
orderPseudomonadales-0.0380.09680.153
familyEubacteriaceae-0.0380.09920.156
speciesHoldemania_filiformis-0.0380.10.156
speciesParabacteroides_johnsonii0.0380.10.156
genusEubacterium-0.0380.1010.157
genusPropionibacterium-0.0380.1030.16
genusSutterella-0.0380.1040.161
genusMorganella0.0360.1160.178
speciesMorganella_morganii0.0360.1160.178
speciesKlebsiella_sp_MS_92_30.0360.120.183
speciesLactococcus_garvieae0.0360.120.183
speciesRuminococcus_champanellensis-0.0350.1250.19
familyViruses_noname0.0350.1310.198
genusViruses_noname0.0350.1310.198
speciesAnaerotruncus_colihominis0.0350.1350.204
speciesClostridium_bartlettii0.0350.1360.204
familyMyoviridae0.0340.1420.212
speciesBacteroides_finegoldii0.0340.1420.212
speciesLactobacillus_acidophilus-0.0340.1440.214
speciesTuricibacter_unclassified-0.0340.1440.214
genusPeptostreptococcaceae_noname0.0340.1450.214
speciesCollinsella_intestinalis0.0340.1450.214
genusStaphylococcus0.0340.1470.216
speciesMegamonas_funiformis0.0330.150.22
familyLeuconostocaceae0.0330.1520.222
speciesSlackia_piriformis-0.0330.1540.224
speciesBacteroides_faecis0.0330.1580.229
speciesRuminococcus_callidus-0.0320.1620.235
speciesLactobacillus_casei_paracasei-0.0320.1670.241
genusTuricibacter-0.0320.170.245
genusPeptostreptococcus0.0310.1740.25
speciesEubacterium_rectale-0.0310.1760.252
speciesOscillibacter_sp_KLE_1728-0.0310.1790.255
speciesDialister_invisus-0.0310.1810.257
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0310.1820.258
speciesStreptococcus_vestibularis0.0310.1840.26
genusGordonibacter-0.0310.1850.26
speciesGordonibacter_pamelaeae-0.0310.1850.26
speciesBacteroides_uniformis0.030.190.266
speciesAlistipes_putredinis-0.030.1950.272
speciesBacteroides_sp_4_3_47FAA0.030.1960.273
speciesAcidaminococcus_unclassified-0.030.1970.273
speciesDorea_unclassified-0.0290.2030.281
speciesErysipelotrichaceae_bacterium_3_1_530.0290.2070.286
genusLeuconostoc-0.0290.2130.291
genusAcidaminococcaceae_unclassified-0.0290.2130.291
speciesEubacterium_cylindroides-0.0290.2130.291
speciesRuminococcus_sp_JC304-0.0280.2190.299
speciesEubacterium_limosum0.0280.2240.304
genusButyricimonas0.0280.2250.304
speciesButyricimonas_synergistica0.0280.2250.304
speciesAlistipes_shahii-0.0280.2270.306
genusSlackia-0.0270.2380.32
genusCoriobacteriaceae_noname-0.0270.2460.33
speciesEggerthella_lenta-0.0270.2470.33
speciesBacteroides_dorei0.0270.2490.332
classNegativicutes0.0260.2560.339
orderSelenomonadales0.0260.2560.339
orderBacillales0.0260.2580.341
speciesLactobacillus_ruminis-0.0260.2660.351
speciesClostridium_clostridioforme0.0250.2780.366
speciesCoriobacteriaceae_bacterium_phI-0.0250.2790.366
speciesRoseburia_hominis-0.0250.2840.371
speciesAlistipes_sp_AP11-0.0240.2910.379
speciesBacteroides_sp_3_1_190.0240.30.39
speciesEubacterium_ventriosum-0.0240.3050.395
genusMyoviridae_noname0.0230.310.401
genusAcidaminococcus0.0230.3220.415
speciesLactobacillus_fermentum0.0230.3240.416
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0230.3240.416
speciesEubacterium_sp_3_1_31-0.0230.330.422
genusParvimonas0.0220.3410.435
speciesParvimonas_unclassified0.0220.3420.435
speciesBlautia_producta0.0210.3530.448
speciesAlistipes_unclassified0.0210.3540.448
speciesPrevotella_bivia0.0210.3550.448
speciesStreptococcus_phage_Sfi21-0.0210.3560.448
speciesAlistipes_sp_HGB50.0210.3730.468
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0210.3740.468
speciesStreptococcus_gordonii0.020.3820.477
speciesStreptococcus_lutetiensis0.0190.4180.521
speciesLachnospiraceae_bacterium_1_4_56FAA0.0190.4210.523
speciesStreptococcus_sanguinis0.0190.4220.523
speciesRuminococcus_lactaris0.0180.4360.539
speciesCoprobacillus_sp_29_10.0180.4410.543
speciesOdoribacter_unclassified-0.0180.4440.546
speciesPeptostreptococcus_anaerobius-0.0170.460.564
speciesCollinsella_unclassified0.0170.4650.569
speciesOdoribacter_splanchnicus0.0170.470.573
genusPantoea0.0160.4780.579
speciesKlebsiella_phage_KP36-0.0160.4780.579
speciesPantoea_unclassified0.0160.4780.579
speciesParabacteroides_sp_D130.0160.4970.6
familyOxalobacteraceae-0.0160.4990.601
speciesClostridium_sp_KLE_1755-0.0160.5020.603
genusHoldemania-0.0150.5150.617
genusSutterellaceae_unclassified0.0150.5160.617
speciesBacteroides_salanitronis-0.0150.5220.622
speciesLeuconostoc_lactis0.0150.5250.624
speciesLactobacillus_plantarum-0.0150.5260.624
speciesParabacteroides_unclassified0.0150.5310.628
speciesBacteroides_coprophilus0.0140.5520.651
speciesBifidobacterium_breve-0.0130.560.655
speciesLactococcus_phage_936_sensu_lato-0.0130.560.655
genusActinomyces0.0130.5610.655
genusOxalobacter-0.0130.5620.655
speciesOxalobacter_formigenes-0.0130.5620.655
genusLambdalikevirus0.0130.5680.659
speciesEnterococcus_faecalis0.0130.5680.659
speciesBacteroides_massiliensis0.0130.5710.661
speciesCoprobacillus_sp_D6-0.0120.5960.688
genusPeptoniphilus-0.0120.6010.692
speciesStreptococcus_australis0.0120.6150.706
familyActinomycetaceae0.0110.620.709
speciesBacteroides_sp_2_1_220.0110.6210.709
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0110.6220.709
familyPodoviridae0.0110.630.717
genusEnterococcus0.0110.6340.719
speciesBacteroides_caccae-0.010.6510.737
genusPorphyromonas0.010.6780.763
speciesErysipelotrichaceae_bacterium_6_1_45-0.010.6780.763
speciesAlistipes_indistinctus-0.010.6790.763
speciesPorphyromonas_uenonis-0.0090.6820.765
orderActinomycetales-0.0090.6840.765
familyEnterococcaceae0.0090.6970.776
speciesBacteroides_clarus0.0090.6970.776
genusLachnospiraceae_noname0.0090.7130.792
speciesLactobacillus_sanfranciscensis0.0080.7180.796
speciesLactobacillus_gasseri0.0080.7310.808
genusOdoribacter0.0080.7330.808
speciesGemella_morbillorum0.0080.7450.82
familyPrevotellaceae-0.0070.7590.831
speciesBacteroides_eggerthii-0.0070.7590.831
genusTunalikevirus-0.0070.7650.836
speciesLactococcus_phage_phi70.0070.7730.841
genusButyricicoccus0.0070.7770.841
speciesButyricicoccus_pullicaecorum0.0070.7770.841
speciesRothia_mucilaginosa0.0070.7770.841
speciesOscillibacter_sp_KLE_17450.0060.7850.845
genusSolobacterium0.0060.7860.845
speciesSolobacterium_moorei0.0060.7860.845
speciesBifidobacterium_angulatum-0.0060.7910.849
speciesEggerthella_sp_1_3_56FAA-0.0060.7960.852
speciesHoldemania_sp_AP20.0060.8010.855
familyRikenellaceae0.0050.830.879
genusAlistipes0.0050.830.879
familyBacillales_noname0.0050.8310.879
genusGemella0.0050.8310.879
speciesAlistipes_onderdonkii0.0050.8380.885
speciesLactococcus_phage_bIL67-0.0040.8510.897
speciesLactococcus_phage_jm2-0.0040.860.904
speciesLactobacillus_reuteri0.0040.8630.905
speciesHoldemania_unclassified0.0040.8670.907
speciesBacteroides_fluxus-0.0040.8790.915
familyOscillospiraceae0.0030.880.915
genusOscillibacter0.0030.880.915
speciesBacteroides_barnesiae0.0030.8930.926
speciesLactobacillus_amylovorus-0.0030.8970.928
speciesTuricibacter_sanguinis-0.0030.9120.942
speciesParabacteroides_sp_20_3-0.0020.9240.952
speciesPeptostreptococcaceae_noname_unclassified0.0020.9260.952
genusRothia0.0020.9330.957
familyMicrococcaceae0.0020.9380.959
speciesOscillibacter_unclassified-0.0020.9390.959
speciesRoseburia_intestinalis0.0010.9490.967
speciesParabacteroides_merdae-0.0010.9520.967
familyClostridiales_Family_XI_Incertae_Sedis-0.0010.9530.967
speciesSutterella_parvirubra-0.0010.9610.973
speciesPorphyromonas_asaccharolytica-0.0010.9650.974
speciesEubacterium_dolichum0.0010.9660.974
genusBlautia0.00.9830.989
speciesEnterococcus_faecium0.00.9850.989
orderAeromonadales0.00.9930.995
orderViruses_noname0.00.9960.996
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.0007415068020790.0009563073160870.0145053907841481815.7931
Colorectal cancerAustria64355.76699144968e-052.35336050689e-050.222179323356961732.5382
Liver cirrhosisChina1201140.009161971844870.001861638291630.4224397909242337778.528
Crohns diseaseSpain17666.43861714746e-050.002741337416480.4579971889412252174.8828
Ulcerative colitisSpain78660.0002171626556810.002741337416480.7251578999862421179.8674
Type II diabetesChina1831850.003592168967750.0023010850990.7747377869412615586.4371
Rheumatoid arthritisChina127980.001112377181280.0009818609597930.8421683147372593486.4841
ObesityDenmark1691230.001362560462030.0003644041222190.9087372863042854593.8641
Type II diabetesSweden53920.0002910307552940.0001443238279080.9778712317032887297.7718
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382