MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-04 10:39:55 PST
Job id & description: 2068, Bo2228_N
Query type: dna
Count queries & homologs: 1, 3
Min % identity & max e-value: 90%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
Bo2228_N3005303CompleteunknownNOG42312BacteroidetesBacteroides100.0100.099.77
Bo2228_N3012027CompleteunknownNOG42312BacteroidetesBacteroides100.0100.094.81
Bo2228_N3020145Lack 5'-endunknownNOG42312BacteroidetesBacteroides100.099.6592.96
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesBacteroides_ovatus0.7261.44e-3066.8e-304
familyBacteroidaceae0.678.34e-2441.31e-241
genusBacteroides0.678.34e-2441.31e-241
phylumBacteroidetes0.5147.03e-1275.62e-125
classBacteroidia0.5147.15e-1275.62e-125
orderBacteroidales0.5147.15e-1275.62e-125
speciesBacteroides_xylanisolvens0.4934.33e-1152.92e-113
speciesBacteroides_thetaiotaomicron0.4521.34e-947.91e-93
phylumFirmicutes-0.4381.06e-885.56e-87
genusParabacteroides0.41.34e-726.32e-71
classClostridia-0.394.14e-691.63e-67
orderClostridiales-0.394.14e-691.63e-67
genusDorea-0.3882.53e-689.19e-67
speciesDorea_longicatena-0.3846.96e-672.35e-65
speciesRuminococcus_obeum-0.3662.14e-606.73e-59
speciesCoprococcus_catus-0.3581.2e-573.54e-56
genusCoprococcus-0.3564.95e-571.37e-55
familyRuminococcaceae-0.3537.71e-562.02e-54
orderCoriobacteriales-0.3461.23e-532.9e-52
familyCoriobacteriaceae-0.3461.23e-532.9e-52
speciesCollinsella_aerofaciens-0.3444.04e-539.08e-52
speciesMethanobrevibacter_smithii-0.3375.98e-511.28e-49
classMethanobacteria-0.3379.35e-511.77e-49
orderMethanobacteriales-0.3379.35e-511.77e-49
familyMethanobacteriaceae-0.3379.35e-511.77e-49
familyPorphyromonadaceae0.3352.39e-504.34e-49
genusMethanobrevibacter-0.3331.36e-492.38e-48
phylumActinobacteria-0.3284.36e-487.1e-47
classActinobacteria-0.3284.36e-487.1e-47
phylumEuryarchaeota-0.3276.68e-481.05e-46
genusCollinsella-0.3277.32e-481.11e-46
speciesEubacterium_hallii-0.3183.03e-454.47e-44
speciesBacteroides_uniformis0.3144.75e-446.79e-43
speciesBacteroides_fragilis0.3131.03e-431.43e-42
genusFlavonifractor0.3112.8e-433.67e-42
speciesFlavonifractor_plautii0.3112.8e-433.67e-42
speciesCoprococcus_comes-0.3099.55e-431.22e-41
genusOlsenella-0.3033.86e-414.79e-40
familyLachnospiraceae-0.3028.84e-411.07e-39
speciesBifidobacterium_adolescentis-0.2981.05e-391.24e-38
speciesBacteroides_vulgatus0.2971.76e-392.03e-38
speciesOlsenella_unclassified-0.2972.48e-392.79e-38
speciesDorea_formicigenerans-0.2958.23e-399.03e-38
speciesClostridium_citroniae0.2941e-381.07e-37
genusErysipelotrichaceae_noname-0.2853.29e-363.45e-35
classErysipelotrichia-0.2772.55e-342.51e-33
orderErysipelotrichales-0.2772.55e-342.51e-33
familyErysipelotrichaceae-0.2772.55e-342.51e-33
speciesSubdoligranulum_unclassified-0.2773.01e-342.9e-33
speciesClostridium_symbiosum0.2741.25e-331.18e-32
speciesEubacterium_biforme-0.2733.25e-333.01e-32
speciesClostridium_bolteae0.2724.01e-333.64e-32
genusSubdoligranulum-0.2719.65e-338.59e-32
speciesEubacterium_siraeum-0.2691.9e-321.66e-31
speciesEubacterium_ramulus-0.2675.37e-324.61e-31
speciesClostridiales_bacterium_1_7_47FAA0.2634.79e-314.04e-30
genusActinomyces-0.2621.16e-309.61e-30
familyActinomycetaceae-0.2621.19e-309.68e-30
orderBifidobacteriales-0.2595.88e-304.63e-29
familyBifidobacteriaceae-0.2595.88e-304.63e-29
genusBifidobacterium-0.2571.57e-291.21e-28
genusRuminococcus-0.2547.28e-295.54e-28
speciesAnaerostipes_hadrus-0.2496.96e-285.21e-27
speciesMethanobrevibacter_unclassified-0.2357.03e-255.18e-24
speciesRuminococcus_sp_5_1_39BFAA-0.235.96e-244.33e-23
speciesRuminococcus_gnavus0.2291.22e-238.72e-23
orderActinomycetales-0.2273.24e-232.28e-22
familyClostridiales_noname0.227.56e-225.25e-21
speciesClostridium_hathewayi0.2191.18e-217.61e-21
phylumVerrucomicrobia-0.2181.21e-217.61e-21
classVerrucomicrobiae-0.2181.21e-217.61e-21
orderVerrucomicrobiales-0.2181.21e-217.61e-21
familyVerrucomicrobiaceae-0.2181.21e-217.61e-21
genusAkkermansia-0.2181.21e-217.61e-21
speciesAkkermansia_muciniphila-0.2181.21e-217.61e-21
genusAdlercreutzia-0.2163.01e-211.85e-20
speciesAdlercreutzia_equolifaciens-0.2163.01e-211.85e-20
genusButyrivibrio-0.2164.35e-212.63e-20
classBacilli-0.215.02e-203e-19
orderLactobacillales-0.2096.33e-203.73e-19
speciesFusobacterium_ulcerans0.2062.41e-191.4e-18
genusCatenibacterium-0.2044.8e-192.73e-18
speciesCatenibacterium_mitsuokai-0.2044.8e-192.73e-18
speciesButyrivibrio_crossotus-0.2021.37e-187.7e-18
speciesParaprevotella_unclassified-0.2012.01e-181.12e-17
genusParaprevotella-0.1984.77e-182.62e-17
speciesBacteroides_stercoris0.1984.97e-182.7e-17
genusMethanosphaera-0.1977.86e-184.17e-17
speciesMethanosphaera_stadtmanae-0.1977.86e-184.17e-17
familyPrevotellaceae-0.1961.37e-177.18e-17
familyRikenellaceae0.1951.84e-179.44e-17
genusAlistipes0.1951.84e-179.44e-17
speciesBacteroides_nordii0.1933.44e-171.75e-16
speciesClostridium_asparagiforme0.1933.48e-171.75e-16
speciesBilophila_unclassified0.191.15e-165.71e-16
speciesStreptococcus_thermophilus-0.191.39e-166.83e-16
genusBilophila0.1891.97e-169.59e-16
genusAnaerostipes-0.1882.28e-161.1e-15
genusClostridiales_noname0.1882.34e-161.12e-15
familyEubacteriaceae-0.1856.26e-162.95e-15
genusEubacterium-0.1857.15e-163.34e-15
speciesParabacteroides_distasonis0.1822.09e-159.67e-15
speciesCoprococcus_sp_ART55_1-0.1822.44e-151.12e-14
speciesErysipelotrichaceae_bacterium_21_3-0.1813.18e-151.44e-14
speciesParaprevotella_clara-0.1771.24e-145.57e-14
speciesBacteroides_dorei0.1771.43e-146.37e-14
speciesAnaerotruncus_unclassified-0.1761.58e-146.97e-14
speciesBifidobacterium_longum-0.1752.13e-149.31e-14
speciesMitsuokella_unclassified-0.1752.78e-141.2e-13
familyStreptococcaceae-0.1752.79e-141.2e-13
speciesAlistipes_senegalensis-0.1734.56e-141.94e-13
genusMitsuokella-0.1735.15e-142.17e-13
speciesClostridium_clostridioforme0.1727.23e-143.02e-13
familyLactobacillaceae-0.1728.09e-143.35e-13
genusPhascolarctobacterium-0.171.29e-135.25e-13
speciesPhascolarctobacterium_succinatutens-0.171.29e-135.25e-13
classBetaproteobacteria0.1691.71e-136.9e-13
speciesLachnospiraceae_bacterium_5_1_63FAA-0.1691.88e-137.52e-13
genusBlautia-0.1682.72e-131.07e-12
speciesBacteroides_sp_2_1_220.1682.73e-131.07e-12
orderBurkholderiales0.1673.44e-131.34e-12
familyBurkholderiales_noname0.1674.15e-131.61e-12
genusLactobacillus-0.1664.86e-131.86e-12
genusStreptococcus-0.1665.39e-132.05e-12
speciesPropionibacterium_freudenreichii-0.1655.98e-132.26e-12
genusBurkholderiales_noname0.1657.95e-132.95e-12
speciesBurkholderiales_bacterium_1_1_470.1657.95e-132.95e-12
familyFusobacteriaceae0.1641.07e-123.92e-12
familyPeptostreptococcaceae-0.1641.07e-123.92e-12
phylumFusobacteria0.1631.16e-124.15e-12
classFusobacteriia0.1631.16e-124.15e-12
orderFusobacteriales0.1631.16e-124.15e-12
speciesRuminococcus_torques-0.1631.32e-124.68e-12
speciesPrevotella_copri-0.1622.04e-127.19e-12
speciesEubacterium_cylindroides-0.163.26e-121.14e-11
genusPeptostreptococcaceae_noname-0.163.67e-121.27e-11
speciesLactobacillus_rhamnosus-0.1594.08e-121.41e-11
speciesEggerthella_unclassified0.1594.77e-121.63e-11
familyOscillospiraceae0.1578.15e-122.75e-11
genusOscillibacter0.1578.15e-122.75e-11
genusFusobacterium0.1579.88e-123.31e-11
speciesStreptococcus_parasanguinis-0.1561.11e-113.69e-11
speciesRuminococcus_bromii-0.1551.55e-115.12e-11
speciesParaprevotella_xylaniphila-0.1551.7e-115.57e-11
speciesStreptococcus_mutans-0.1542.45e-117.98e-11
genusPropionibacterium-0.1524.43e-111.42e-10
speciesParabacteroides_unclassified0.1524.43e-111.42e-10
speciesBacteroides_caccae0.1515.91e-111.88e-10
speciesAnaerostipes_unclassified0.156.4e-112.03e-10
familyAcidaminococcaceae-0.1481.11e-103.49e-10
speciesStreptococcus_salivarius-0.1481.17e-103.66e-10
speciesBilophila_wadsworthia0.1471.53e-104.75e-10
genusPrevotella-0.1471.54e-104.75e-10
speciesBifidobacterium_animalis-0.1471.55e-104.75e-10
genusPseudoflavonifractor-0.1471.77e-105.36e-10
speciesPseudoflavonifractor_capillosus-0.1471.77e-105.36e-10
genusEggerthella0.1453.13e-109.41e-10
speciesPeptostreptococcaceae_noname_unclassified-0.1453.4e-101.02e-09
familyMicrococcaceae-0.1443.75e-101.11e-09
genusRothia-0.1444.16e-101.23e-09
speciesCoprobacillus_unclassified0.1434.83e-101.42e-09
speciesClostridium_nexile0.1435e-101.46e-09
genusSolobacterium-0.1427.21e-102.08e-09
speciesSolobacterium_moorei-0.1427.21e-102.08e-09
speciesDesulfovibrio_piger-0.1418.93e-102.55e-09
speciesClostridium_sp_L2_50-0.1391.44e-094.09e-09
genusParasutterella0.1391.5e-094.21e-09
speciesParasutterella_excrementihominis0.1391.5e-094.21e-09
speciesRuminococcus_champanellensis-0.1391.73e-094.83e-09
genusClostridiaceae_noname0.1391.76e-094.86e-09
speciesClostridiaceae_bacterium_JC1180.1391.76e-094.86e-09
genusOxalobacter-0.1381.96e-095.35e-09
speciesOxalobacter_formigenes-0.1381.96e-095.35e-09
speciesStreptococcus_sanguinis-0.1382.12e-095.75e-09
genusDesulfovibrio-0.1382.17e-095.85e-09
familyOxalobacteraceae-0.1372.41e-096.46e-09
speciesBifidobacterium_catenulatum-0.1372.76e-097.36e-09
speciesOdoribacter_splanchnicus0.1363.43e-099.1e-09
classDeltaproteobacteria0.1345.29e-091.38e-08
orderDesulfovibrionales0.1345.29e-091.38e-08
familyDesulfovibrionaceae0.1345.29e-091.38e-08
speciesMitsuokella_multacida-0.1346.49e-091.68e-08
genusTuricibacter-0.1346.67e-091.72e-08
speciesTuricibacter_sanguinis-0.1336.98e-091.79e-08
familySutterellaceae0.1337.06e-091.8e-08
speciesAnaerotruncus_colihominis0.1338.12e-092.05e-08
speciesFusobacterium_varium0.1338.13e-092.05e-08
speciesOscillibacter_unclassified0.1338.41e-092.11e-08
speciesLactobacillus_casei_paracasei-0.1321.03e-082.57e-08
speciesCoprococcus_eutactus-0.1311.34e-083.33e-08
genusBarnesiella-0.1311.46e-083.59e-08
speciesBarnesiella_intestinihominis-0.1311.46e-083.59e-08
genusOdoribacter0.131.52e-083.72e-08
familyBacillales_noname-0.131.62e-083.92e-08
genusGemella-0.131.62e-083.92e-08
phylumProteobacteria0.131.75e-084.21e-08
speciesRothia_mucilaginosa-0.1282.51e-085.98e-08
speciesRuminococcus_lactaris-0.1282.51e-085.98e-08
speciesEubacterium_rectale-0.1273.56e-088.44e-08
orderBacillales-0.1274e-089.44e-08
speciesBifidobacterium_dentium-0.1264.33e-081.02e-07
genusCoprobacillus0.1256.24e-081.46e-07
genusLactococcus-0.1239.83e-082.29e-07
speciesRuminococcus_callidus-0.1211.6e-073.7e-07
speciesClostridium_sp_ATCC_BAA_4420.121.86e-074.28e-07
speciesLactococcus_phage_P680-0.122.05e-074.7e-07
speciesTuricibacter_unclassified-0.1192.64e-076.02e-07
speciesBacteroides_oleiciplenus0.1173.93e-078.92e-07
speciesRoseburia_hominis-0.1174.19e-079.46e-07
speciesClostridium_leptum-0.1165.48e-071.23e-06
speciesAlistipes_putredinis0.1155.7e-071.28e-06
speciesVeillonella_parvula0.1155.89e-071.31e-06
genusSiphoviridae_noname-0.1138.74e-071.94e-06
speciesLachnospiraceae_bacterium_2_1_46FAA0.1139.58e-072.11e-06
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1131.06e-062.33e-06
speciesHaemophilus_parainfluenzae0.1121.09e-062.38e-06
speciesDialister_succinatiphilus-0.1121.3e-062.83e-06
genusHaemophilus0.1111.37e-062.97e-06
speciesLachnospiraceae_bacterium_2_1_58FAA0.1111.43e-063.08e-06
speciesVeillonella_dispar0.1111.57e-063.35e-06
speciesBacteroides_intestinalis0.1111.57e-063.35e-06
orderPasteurellales0.1111.61e-063.41e-06
familyPasteurellaceae0.1111.61e-063.41e-06
speciesStreptococcus_gordonii-0.111.94e-064.09e-06
speciesLactobacillus_ruminis-0.1082.93e-066.15e-06
speciesBacteroides_pectinophilus-0.1073.23e-066.75e-06
genusGordonibacter-0.1073.64e-067.54e-06
speciesGordonibacter_pamelaeae-0.1073.64e-067.54e-06
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1064.41e-069.09e-06
speciesLachnospiraceae_bacterium_6_1_63FAA0.1046.59e-061.35e-05
familyPropionibacteriaceae-0.1046.95e-061.42e-05
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1047.27e-061.48e-05
speciesStreptococcus_vestibularis-0.1037.84e-061.59e-05
genusRuminococcaceae_noname-0.1038.25e-061.66e-05
speciesRuminococcaceae_bacterium_D16-0.1038.25e-061.66e-05
genusVeillonella0.1029.24e-061.85e-05
speciesVeillonella_unclassified0.1029.58e-061.91e-05
speciesLactobacillus_delbrueckii-0.1021.04e-052.06e-05
genusLeuconostoc-0.1011.16e-052.29e-05
genusEnterococcus-0.1011.24e-052.44e-05
phylumViruses_noname-0.1011.28e-052.5e-05
classViruses_noname-0.1011.28e-052.5e-05
familyEnterococcaceae-0.11.37e-052.66e-05
speciesLactococcus_lactis-0.0991.67e-053.23e-05
speciesParabacteroides_merdae0.0991.7e-053.28e-05
speciesKlebsiella_pneumoniae0.0982e-053.84e-05
speciesRuminococcus_sp_JC304-0.0982.32e-054.43e-05
speciesOscillibacter_sp_KLE_17280.0982.4e-054.57e-05
speciesOscillibacter_sp_KLE_17450.0972.89e-055.48e-05
speciesBacteroides_cellulosilyticus0.0963.28e-056.19e-05
speciesClostridium_bartlettii-0.0944.84e-059.1e-05
speciesFusobacterium_mortiferum0.0945.06e-059.48e-05
speciesLachnospiraceae_bacterium_1_4_56FAA0.0935.83e-050.000109
speciesClostridium_ramosum0.0935.84e-050.000109
genusLachnospiraceae_noname-0.0927.05e-050.00013
genusKlebsiella0.0918.35e-050.000154
speciesEubacterium_sp_3_1_310.099.32e-050.000171
familyClostridiaceae0.099.62e-050.000176
speciesLachnospiraceae_bacterium_5_1_57FAA0.090.0001040.00019
genusClostridium0.0880.0001330.000241
genusFaecalibacterium-0.0880.0001370.000247
speciesFaecalibacterium_prausnitzii-0.0880.0001370.000247
familySiphoviridae-0.0870.0001540.000276
speciesEnterococcus_faecium-0.0860.0001820.000325
speciesEnterococcus_faecalis-0.0850.0002340.000417
speciesBifidobacterium_bifidum-0.0850.0002410.000428
speciesPrevotella_buccae0.0850.0002420.000428
speciesDorea_unclassified0.0850.0002430.000428
familyBacteroidales_noname-0.0850.0002460.000428
genusBacteroidales_noname-0.0850.0002460.000428
speciesBacteroidales_bacterium_ph8-0.0850.0002460.000428
speciesEubacterium_ventriosum-0.0850.0002490.000432
genusAnaerotruncus-0.0840.0002590.000448
orderPseudomonadales-0.0840.0002810.000484
speciesAlistipes_onderdonkii0.0840.0002840.000487
orderCaudovirales-0.080.0005130.000877
speciesStreptococcus_anginosus-0.080.0005420.000924
genusPeptostreptococcus-0.0790.0006360.00108
speciesBlautia_producta0.0790.000670.00113
speciesBacteroides_massiliensis0.0780.0007590.00128
speciesVeillonella_atypica0.0760.0009710.00163
speciesMegasphaera_micronuciformis0.0750.001110.00186
speciesEubacterium_dolichum0.0750.001240.00207
speciesLactobacillus_gasseri-0.0740.001360.00226
speciesSutterella_parvirubra0.0730.001670.00277
genusCoprobacter-0.0720.00190.00312
speciesCoprobacter_fastidiosus-0.0720.00190.00312
speciesBifidobacterium_pseudocatenulatum0.0710.002180.00357
speciesBacteroides_coprocola-0.070.002490.00407
speciesHoldemania_sp_AP20.070.002590.00422
speciesEggerthella_sp_1_3_56FAA-0.0690.002830.00459
genusHoldemania0.0690.002960.00478
familyLeuconostocaceae-0.0690.002970.00478
speciesDesulfovibrio_desulfuricans-0.0690.002990.0048
speciesBacteroides_coprophilus-0.0680.003420.00547
speciesParvimonas_unclassified-0.0680.003470.00553
genusParvimonas-0.0680.003480.00553
speciesRoseburia_unclassified-0.0670.003560.00564
speciesSutterella_wadsworthensis-0.0670.003580.00565
speciesStreptococcus_mitis_oralis_pneumoniae-0.0670.0040.00629
speciesPeptostreptococcus_stomatis-0.0660.00410.00643
speciesButyrivibrio_unclassified-0.0650.004690.00733
speciesMegasphaera_elsdenii-0.0650.004710.00734
speciesClostridium_spiroforme-0.0640.005580.00866
speciesGemella_morbillorum-0.0640.005730.00887
speciesBacteroides_plebeius-0.0620.007060.0109
genusMorganella0.0610.00810.0124
speciesMorganella_morganii0.0610.00810.0124
speciesKlebsiella_unclassified0.0610.008250.0126
speciesBacteroides_eggerthii-0.0610.008270.0126
genusPyramidobacter0.0610.008760.0133
speciesPyramidobacter_piscolens0.0610.008760.0133
speciesAcidaminococcus_fermentans-0.060.009250.0139
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.060.00980.0147
familyClostridiales_Family_XI_Incertae_Sedis-0.0590.01030.0154
speciesCollinsella_intestinalis0.0590.01030.0154
speciesLactobacillus_plantarum-0.0590.01040.0155
speciesCollinsella_unclassified0.0580.01170.0174
speciesBacteroides_salanitronis-0.0570.01310.0194
speciesPrevotella_bivia0.0550.01750.0258
genusCampylobacter0.0550.01820.0268
genusSuccinatimonas-0.0540.01980.0289
speciesSuccinatimonas_hippei-0.0540.01980.0289
speciesHaemophilus_sputorum0.0530.02130.031
familySuccinivibrionaceae-0.0530.02290.0333
speciesEscherichia_unclassified-0.0520.02380.0345
speciesAlistipes_finegoldii0.0520.0240.0346
speciesLactococcus_phage_phi7-0.0520.02460.0354
orderViruses_noname-0.0520.0250.0359
speciesErysipelotrichaceae_bacterium_3_1_530.0520.02590.037
familyCampylobacteraceae0.0510.02720.0388
speciesOdoribacter_laneus-0.0510.02730.0388
speciesBacteroides_barnesiae-0.050.02930.0415
speciesPrevotella_stercorea-0.050.02950.0417
phylumSynergistetes0.050.0310.0433
classSynergistia0.050.0310.0433
orderSynergistales0.050.0310.0433
familySynergistaceae0.050.0310.0433
speciesLactobacillus_fermentum-0.050.03130.0436
genusSutterella-0.0490.03260.0453
speciesBacteroides_salyersiae0.0490.03520.0487
classNegativicutes-0.0480.03790.0522
orderSelenomonadales-0.0480.03790.0522
speciesLactococcus_phage_jm2-0.0470.0410.0563
speciesBlautia_hydrogenotrophica-0.0470.0440.0602
classEpsilonproteobacteria0.0460.04670.0635
orderCampylobacterales0.0460.04670.0635
speciesBacteroides_sp_1_1_60.0460.04680.0635
genusActinobacillus0.0460.04850.0654
speciesActinobacillus_unclassified0.0460.04850.0654
speciesEubacterium_eligens-0.0450.0510.0686
speciesMegamonas_rupellensis0.0440.05530.0742
classGammaproteobacteria0.0430.06570.0878
speciesAlistipes_unclassified-0.0420.07190.0959
genusRoseburia0.0410.07780.103
speciesBifidobacterium_angulatum-0.040.08060.107
speciesAggregatibacter_segnis0.040.08070.107
genusMegamonas0.040.08080.107
speciesMegamonas_unclassified0.040.08440.111
genusSlackia-0.0390.09020.118
speciesCampylobacter_concisus0.0390.09080.119
speciesOdoribacter_unclassified-0.0390.09530.124
speciesParabacteroides_sp_20_3-0.0380.09880.128
speciesC2likevirus_unclassified-0.0380.1040.135
genusStaphylococcus-0.0370.1050.136
speciesLactobacillus_acidophilus-0.0370.1060.137
speciesParabacteroides_johnsonii0.0370.1070.138
genusAggregatibacter0.0360.1150.147
speciesSlackia_piriformis-0.0360.1170.15
speciesLactobacillus_amylovorus-0.0360.1230.156
speciesRoseburia_inulinivorans0.0360.1230.156
genusMegasphaera0.0360.1240.157
speciesBacteroides_faecis0.0350.1260.159
genusC2likevirus-0.0340.140.177
genusAcidaminococcus-0.0340.1430.18
speciesKlebsiella_sp_MS_92_30.0340.1430.18
speciesLactococcus_garvieae-0.0330.150.187
speciesBacteroides_sp_3_1_190.0330.150.187
genusPorphyromonas-0.0320.1620.202
speciesEscherichia_coli0.0320.1680.209
genusButyricimonas0.0320.170.21
speciesButyricimonas_synergistica0.0320.170.21
speciesStreptococcus_australis-0.0310.1820.224
speciesBacteroides_finegoldii0.0310.1830.225
speciesAlistipes_indistinctus-0.0310.1870.229
speciesErysipelotrichaceae_bacterium_2_2_44A-0.030.190.232
speciesStreptococcus_infantarius0.030.190.232
orderAeromonadales-0.030.1970.239
genusTunalikevirus0.030.1970.239
speciesFusobacterium_nucleatum0.030.1990.241
speciesParabacteroides_goldsteinii0.030.20.241
genusPantoea0.0290.210.252
speciesPantoea_unclassified0.0290.210.252
speciesLactobacillus_crispatus-0.0290.2120.254
speciesEnterobacteria_phage_HK5440.0290.2160.258
speciesLactococcus_phage_bIL670.0290.2170.259
genusDialister-0.0280.220.262
speciesPeptostreptococcus_anaerobius-0.0280.2220.263
speciesDialister_invisus0.0280.2330.276
speciesKlebsiella_phage_KP360.0270.2370.28
familyStaphylococcaceae-0.0270.250.294
speciesParabacteroides_sp_D13-0.0260.2530.297
speciesStreptococcus_pasteurianus0.0260.2550.299
speciesLactobacillus_oris-0.0260.2560.299
speciesCollinsella_tanakaei0.0260.2630.307
speciesLactobacillus_salivarius0.0260.2640.307
genusPeptoniphilus0.0260.2650.307
genusCitrobacter0.0250.2740.317
speciesAlistipes_shahii0.0250.2820.325
orderEnterobacteriales0.0240.290.333
familyEnterobacteriaceae0.0240.290.333
speciesMegamonas_funiformis-0.0240.2910.333
speciesWeissella_confusa0.0240.2940.336
speciesAlistipes_sp_HGB50.0240.3070.35
genusEscherichia0.0230.3130.356
genusProteus-0.0230.320.363
speciesClostridium_sp_KLE_17550.0230.3230.366
familyPodoviridae0.0230.3260.368
speciesCitrobacter_unclassified0.0220.350.394
speciesLactobacillus_reuteri-0.0210.3640.408
speciesLachnospiraceae_bacterium_1_1_57FAA0.0210.3640.408
genusEnterobacter0.020.3930.44
genusAcidaminococcaceae_unclassified-0.0190.4030.45
genusCoriobacteriaceae_noname-0.0190.4150.462
speciesEnterobacter_aerogenes0.0190.4170.463
genusButyricicoccus0.0180.4330.479
speciesButyricicoccus_pullicaecorum0.0180.4330.479
speciesEubacterium_limosum-0.0180.4380.483
speciesEnterobacter_cloacae0.0170.4590.505
speciesCitrobacter_freundii0.0170.4640.508
speciesEggerthella_lenta0.0170.4640.508
speciesAlistipes_sp_AP110.0170.4670.51
speciesAcidaminococcus_unclassified-0.0160.4850.529
speciesCoriobacteriaceae_bacterium_phI-0.0160.4920.535
speciesCoprobacillus_sp_D60.0140.5440.59
speciesLactobacillus_mucosae-0.0140.5530.599
speciesRoseburia_intestinalis-0.0140.5590.604
familyMyoviridae-0.0130.5690.613
speciesBifidobacterium_breve-0.0130.5850.629
speciesCoprobacillus_sp_29_1-0.0120.5930.636
genusWeissella0.0120.6090.652
familyVeillonellaceae0.0120.6130.655
speciesMegamonas_hypermegale0.0110.6480.69
speciesSubdoligranulum_sp_4_3_54A2FAA0.010.6560.697
speciesErysipelotrichaceae_bacterium_6_1_450.010.6660.706
speciesLactobacillus_vaginalis-0.0090.6870.727
speciesStreptococcus_lutetiensis0.0090.6990.738
speciesHoldemania_unclassified0.0090.7040.742
speciesPorphyromonas_asaccharolytica-0.0090.7060.742
genusLambdalikevirus-0.0090.7120.747
speciesLactococcus_phage_936_sensu_lato0.0080.7160.749
speciesBacteroides_sp_4_3_47FAA0.0080.720.752
speciesLactobacillus_sanfranciscensis0.0080.7460.777
speciesWeissella_cibaria-0.0070.7620.792
speciesStreptococcus_phage_Sfi21-0.0070.7690.798
speciesClostridium_perfringens-0.0060.8050.833
speciesBacteroides_fluxus-0.0050.8260.853
speciesMegasphaera_unclassified0.0050.840.866
speciesKlebsiella_oxytoca-0.0050.8450.869
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0040.850.872
speciesLeuconostoc_lactis0.0040.8530.873
familyViruses_noname0.0040.8610.878
genusViruses_noname0.0040.8610.878
genusSutterellaceae_unclassified-0.0040.8660.881
speciesBacteroides_clarus-0.0040.8680.881
speciesLachnospiraceae_bacterium_7_1_58FAA0.0020.9150.927
speciesAcidaminococcus_intestini-0.0020.9370.947
speciesHoldemania_filiformis-0.0020.9460.954
speciesHaemophilus_paraphrohaemolyticus0.0010.9630.969
speciesPorphyromonas_uenonis-0.0010.9680.972
speciesProteus_mirabilis-0.0010.9750.977
genusMyoviridae_noname0.00.9970.997
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.02858247412560.009164484720020.08425593416011317143.7938
ObesityDenmark1691230.01410144705570.01120457952110.0978557532614724623.8269
Type II diabetesDenmark752770.01265051562380.01296114077060.1509093353291144137.5029
Type II diabetesChina1831850.02904316723820.02357091198890.235262334861435647.4437
Rheumatoid arthritisChina127980.01534920727880.01452563727630.3250155070221277042.5851
Type II diabetesSweden53920.006321153619470.00342956557930.5788340499121819361.6085
Liver cirrhosisChina1201140.02988889522020.02987268075760.6621929643342629488.3268
Colorectal cancerAustria64350.003491968930680.002354560044480.8087454947562522985.36
Ulcerative colitisSpain78660.01112456207670.009164484720020.937426266922897895.5928
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382