MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-05 07:47:17 PST
Job id & description: 2071, traD_protein
Query type: protein
Count queries & homologs: 1, 10
Min % identity & max e-value: 70%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
traD359094CompleteK03205COG3505ProteobacteriaEscherichia100.0100.0100.0
traD330263CompleteK03205COG3505ProteobacteriaEscherichia100.0100.095.39
traD341530CompleteK03205COG3505ProteobacteriaEscherichia100.0100.095.22
traD319514CompleteK03205COG3505ProteobacteriaEscherichia100.0100.094.24
traD315842CompleteK03205COG3505ProteobacteriaEscherichia100.0100.092.4
traD357726CompleteK03205COG3505ProteobacteriaEscherichia99.3100.094.99
traD308650CompleteK03205COG3505ProteobacteriaEscherichia100.0100.091.7
traD297161CompleteunknownCOG3505ProteobacteriaKlebsiella100.0100.070.38
traD333916CompleteK03205COG3505unknownunknown100.0100.071.39
traD561866Lack 3'-endK03205COG3505unknownunknown84.5299.1882.18
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusEscherichia0.6914.21e-2651.99e-262
orderEnterobacteriales0.6831.19e-2571.87e-255
familyEnterobacteriaceae0.6831.19e-2571.87e-255
speciesEscherichia_coli0.6831.62e-2571.91e-255
classGammaproteobacteria0.6332.53e-2102.39e-208
phylumProteobacteria0.4877.96e-1126.26e-110
genusKlebsiella0.4138.25e-785.56e-76
speciesKlebsiella_pneumoniae0.3951.01e-705.96e-69
speciesEscherichia_unclassified0.3846.87e-673.6e-65
genusEnterobacter0.3182.85e-451.35e-43
speciesClostridium_nexile0.3153.03e-441.3e-42
speciesEnterobacter_cloacae0.3137.48e-442.94e-42
speciesRuminococcus_gnavus0.34.6e-401.67e-38
speciesClostridium_hathewayi0.2781.44e-344.85e-33
genusCoprobacillus0.2765.98e-341.88e-32
familyFusobacteriaceae0.2757.98e-342.35e-32
genusFusobacterium0.271.31e-323.64e-31
phylumFusobacteria0.2691.77e-324.18e-31
classFusobacteriia0.2691.77e-324.18e-31
orderFusobacteriales0.2691.77e-324.18e-31
genusCitrobacter0.2685.21e-321.17e-30
genusPantoea0.2661.02e-312.09e-30
speciesPantoea_unclassified0.2661.02e-312.09e-30
speciesClostridium_bolteae0.2644.25e-318.36e-30
speciesCitrobacter_freundii0.2611.71e-303.23e-29
speciesCitrobacter_unclassified0.2531.02e-281.85e-27
speciesCoprobacillus_unclassified0.2531.22e-282.13e-27
speciesEubacterium_siraeum-0.2422.3e-263.88e-25
speciesBacteroides_fragilis0.2422.93e-264.77e-25
speciesSubdoligranulum_unclassified-0.2356.46e-251.02e-23
speciesClostridium_symbiosum0.2282.07e-233.15e-22
genusSubdoligranulum-0.2272.68e-233.95e-22
speciesClostridium_ramosum0.2213.71e-225.31e-21
genusMegasphaera0.2121.79e-202.48e-19
genusFlavonifractor0.213.88e-205.09e-19
speciesFlavonifractor_plautii0.213.88e-205.09e-19
speciesClostridiales_bacterium_1_7_47FAA0.215e-206.38e-19
genusButyrivibrio-0.2095.46e-206.78e-19
familyClostridiaceae0.2071.34e-191.62e-18
genusCoprococcus-0.2071.83e-192.16e-18
genusClostridium0.2052.93e-193.37e-18
speciesKlebsiella_oxytoca0.1994.03e-184.53e-17
speciesEggerthella_unclassified0.1977.19e-187.89e-17
genusWeissella0.1951.71e-171.83e-16
speciesEubacterium_ramulus-0.1933.26e-173.42e-16
speciesAnaerotruncus_unclassified-0.1925.32e-175.46e-16
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1926.19e-176.22e-16
genusPseudoflavonifractor-0.1919.63e-179.28e-16
speciesPseudoflavonifractor_capillosus-0.1919.63e-179.28e-16
genusEggerthella0.1873e-162.83e-15
speciesKlebsiella_unclassified0.1831.6e-151.47e-14
speciesClostridium_citroniae0.1831.62e-151.47e-14
speciesWeissella_confusa0.1771.22e-141.09e-13
genusEubacterium-0.1761.58e-141.38e-13
familyEubacteriaceae-0.1761.64e-141.41e-13
phylumSynergistetes0.1761.94e-141.55e-13
classSynergistia0.1761.94e-141.55e-13
orderSynergistales0.1761.94e-141.55e-13
familySynergistaceae0.1761.94e-141.55e-13
genusPyramidobacter0.1735.23e-144.05e-13
speciesPyramidobacter_piscolens0.1735.23e-144.05e-13
genusBarnesiella-0.1735.54e-144.15e-13
speciesBarnesiella_intestinihominis-0.1735.54e-144.15e-13
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1726.02e-144.44e-13
speciesMegamonas_unclassified0.1711.14e-138.28e-13
genusMegamonas0.171.27e-139.08e-13
speciesEubacterium_rectale-0.171.34e-139.44e-13
speciesBifidobacterium_adolescentis-0.1682.3e-131.6e-12
familyRuminococcaceae-0.1682.62e-131.79e-12
genusRuminococcaceae_noname-0.1682.83e-131.86e-12
speciesRuminococcaceae_bacterium_D16-0.1682.83e-131.86e-12
speciesBifidobacterium_pseudocatenulatum0.1682.83e-131.86e-12
classClostridia-0.1682.95e-131.88e-12
orderClostridiales-0.1682.95e-131.88e-12
speciesClostridium_leptum-0.1665.65e-133.56e-12
speciesFusobacterium_ulcerans0.1656.05e-133.76e-12
speciesDorea_longicatena-0.1657.09e-134.35e-12
speciesCoprococcus_comes-0.1648.6e-135.2e-12
speciesLactobacillus_salivarius0.1631.56e-129.32e-12
speciesStreptococcus_infantarius0.1621.95e-121.15e-11
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1621.98e-121.15e-11
speciesFusobacterium_mortiferum0.1612.29e-121.32e-11
speciesEubacterium_hallii-0.1612.64e-121.5e-11
speciesButyrivibrio_unclassified-0.1612.72e-121.53e-11
familyLeuconostocaceae0.1586.44e-123.58e-11
speciesLachnospiraceae_bacterium_6_1_63FAA0.1587.26e-123.98e-11
speciesSutterella_wadsworthensis-0.1579.43e-125.12e-11
speciesVeillonella_parvula0.1561.19e-116.38e-11
speciesLactococcus_garvieae0.1561.22e-116.47e-11
speciesRoseburia_hominis-0.1561.28e-116.71e-11
speciesMegasphaera_unclassified0.1561.33e-116.9e-11
speciesWeissella_cibaria0.1551.57e-118.05e-11
speciesAlistipes_senegalensis-0.1541.94e-119.85e-11
speciesBacteroides_stercoris0.1541.98e-119.94e-11
speciesClostridium_perfringens0.1542.14e-111.06e-10
speciesStreptococcus_thermophilus-0.1532.53e-111.24e-10
speciesMegasphaera_micronuciformis0.1532.97e-111.45e-10
speciesLactobacillus_mucosae0.1523.59e-111.73e-10
genusEnterococcus0.1523.71e-111.77e-10
familyEnterococcaceae0.1523.77e-111.78e-10
speciesCoprococcus_sp_ART55_1-0.1524.1e-111.92e-10
genusSutterella-0.156.26e-112.9e-10
genusDorea-0.1498.26e-113.79e-10
speciesAnaerostipes_hadrus-0.1481.11e-105.04e-10
speciesBacteroides_thetaiotaomicron0.1481.13e-105.08e-10
speciesFusobacterium_varium0.1471.51e-106.72e-10
classBacilli0.1462.58e-101.14e-09
orderLactobacillales0.1452.6e-101.14e-09
speciesEnterobacter_aerogenes0.1443.83e-101.66e-09
speciesCoprococcus_catus-0.1444.22e-101.81e-09
familyBacteroidales_noname-0.1434.82e-102.01e-09
genusBacteroidales_noname-0.1434.82e-102.01e-09
speciesBacteroidales_bacterium_ph8-0.1434.82e-102.01e-09
genusCoprobacter-0.1434.96e-102.04e-09
speciesCoprobacter_fastidiosus-0.1434.96e-102.04e-09
speciesAnaerostipes_unclassified0.1435.87e-102.39e-09
speciesFusobacterium_nucleatum0.1427.23e-102.92e-09
speciesC2likevirus_unclassified-0.1419.68e-103.87e-09
genusC2likevirus-0.141.28e-095.08e-09
genusVeillonella0.1381.93e-097.42e-09
phylumVerrucomicrobia-0.1381.98e-097.42e-09
classVerrucomicrobiae-0.1381.98e-097.42e-09
orderVerrucomicrobiales-0.1381.98e-097.42e-09
familyVerrucomicrobiaceae-0.1381.98e-097.42e-09
genusAkkermansia-0.1381.98e-097.42e-09
speciesAkkermansia_muciniphila-0.1381.98e-097.42e-09
speciesBacteroides_plebeius0.1382.35e-098.73e-09
genusClostridiales_noname0.1372.95e-091.09e-08
speciesPrevotella_stercorea0.1363.67e-091.34e-08
speciesStreptococcus_anginosus0.1346.15e-092.23e-08
speciesBacteroides_uniformis-0.1346.74e-092.43e-08
speciesLachnospiraceae_bacterium_2_1_58FAA0.1337.23e-092.59e-08
phylumFirmicutes-0.1337.73e-092.74e-08
genusPrevotella0.1321.01e-083.56e-08
genusBlautia0.131.57e-085.49e-08
speciesMitsuokella_unclassified-0.131.73e-086e-08
familyPeptostreptococcaceae0.131.84e-086.34e-08
familyClostridiales_noname0.1291.92e-086.57e-08
speciesBacteroides_nordii0.1292.14e-087.27e-08
familyLactobacillaceae0.1283.01e-081.01e-07
genusLactobacillus0.1264.23e-081.42e-07
speciesBilophila_unclassified0.1264.8e-081.6e-07
genusSolobacterium0.1255.84e-081.91e-07
speciesSolobacterium_moorei0.1255.84e-081.91e-07
genusBilophila0.1256.36e-082.07e-07
speciesRuminococcus_sp_5_1_39BFAA-0.1247.84e-082.53e-07
genusMitsuokella-0.1211.43e-074.59e-07
speciesCollinsella_aerofaciens-0.1211.49e-074.75e-07
speciesEnterococcus_faecium0.1211.64e-075.2e-07
speciesLachnospiraceae_bacterium_8_1_57FAA-0.122.04e-076.42e-07
speciesParaprevotella_unclassified-0.1192.36e-077.38e-07
speciesButyrivibrio_crossotus-0.1192.41e-077.48e-07
speciesStreptococcus_salivarius0.1182.77e-078.55e-07
speciesBacteroides_pectinophilus-0.1183.45e-071.06e-06
speciesAlistipes_shahii-0.1173.72e-071.13e-06
genusParaprevotella-0.1174.03e-071.22e-06
speciesAlistipes_putredinis-0.1165.21e-071.57e-06
speciesRuminococcus_lactaris-0.1165.25e-071.57e-06
familyMyoviridae0.1165.49e-071.63e-06
genusPeptostreptococcaceae_noname0.1156.4e-071.89e-06
speciesParaprevotella_xylaniphila-0.1147.15e-072.08e-06
speciesBacteroides_intestinalis0.1147.15e-072.08e-06
familyBacteroidaceae0.1148.1e-072.33e-06
genusBacteroides0.1148.1e-072.33e-06
speciesEnterococcus_faecalis0.1148.45e-072.41e-06
speciesClostridium_bartlettii0.1148.48e-072.41e-06
speciesBifidobacterium_dentium0.1121.23e-063.48e-06
speciesMegamonas_rupellensis0.1121.25e-063.51e-06
speciesOdoribacter_splanchnicus-0.1111.39e-063.88e-06
speciesDorea_formicigenerans-0.1111.58e-064.39e-06
speciesStreptococcus_mitis_oralis_pneumoniae0.111.68e-064.64e-06
phylumEuryarchaeota-0.111.92e-065.27e-06
genusCollinsella-0.112.04e-065.57e-06
speciesStreptococcus_lutetiensis0.112.06e-065.59e-06
familyRikenellaceae-0.1092.22e-065.95e-06
genusAlistipes-0.1092.22e-065.95e-06
classDeltaproteobacteria0.1092.26e-065.96e-06
orderDesulfovibrionales0.1092.26e-065.96e-06
familyDesulfovibrionaceae0.1092.26e-065.96e-06
speciesKlebsiella_sp_MS_92_30.1092.47e-066.48e-06
genusOdoribacter-0.1082.64e-066.88e-06
speciesClostridium_clostridioforme0.1082.99e-067.75e-06
speciesMethanobrevibacter_smithii-0.1083.09e-067.97e-06
familyBacillales_noname0.1073.19e-068.07e-06
genusGemella0.1073.19e-068.07e-06
speciesLachnospiraceae_bacterium_2_1_46FAA0.1073.22e-068.07e-06
classMethanobacteria-0.1073.23e-068.07e-06
orderMethanobacteriales-0.1073.23e-068.07e-06
familyMethanobacteriaceae-0.1073.23e-068.07e-06
speciesAlistipes_sp_HGB5-0.1073.7e-069.19e-06
genusMorganella0.1064.4e-061.08e-05
speciesMorganella_morganii0.1064.4e-061.08e-05
genusAnaerotruncus-0.1064.61e-061.13e-05
genusMethanobrevibacter-0.1064.79e-061.16e-05
familySiphoviridae-0.1064.8e-061.16e-05
speciesCoprococcus_eutactus-0.1045.95e-061.43e-05
speciesStreptococcus_pasteurianus0.1038.16e-061.96e-05
speciesMegamonas_hypermegale0.1038.87e-062.11e-05
speciesParaprevotella_clara-0.1029.65e-062.27e-05
familyOscillospiraceae-0.1029.66e-062.27e-05
genusOscillibacter-0.1029.66e-062.27e-05
speciesPorphyromonas_uenonis0.1011.18e-052.76e-05
speciesPrevotella_buccae0.1011.27e-052.95e-05
speciesBacteroides_salyersiae0.11.53e-053.54e-05
speciesOscillibacter_unclassified-0.11.57e-053.61e-05
speciesStreptococcus_australis0.11.59e-053.63e-05
speciesVeillonella_unclassified0.11.59e-053.63e-05
familyVeillonellaceae0.11.61e-053.65e-05
speciesCoprobacillus_sp_D60.0982e-054.52e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.0982.02e-054.54e-05
speciesAcidaminococcus_intestini0.0982.23e-054.99e-05
genusPeptostreptococcus0.0972.62e-055.81e-05
speciesParabacteroides_goldsteinii0.0972.62e-055.81e-05
classEpsilonproteobacteria0.0972.87e-056.3e-05
orderCampylobacterales0.0972.87e-056.3e-05
genusAdlercreutzia-0.0972.91e-056.33e-05
speciesAdlercreutzia_equolifaciens-0.0972.91e-056.33e-05
speciesLeuconostoc_lactis0.0963.14e-056.8e-05
speciesHaemophilus_parainfluenzae0.0963.31e-057.13e-05
speciesPrevotella_bivia0.0963.47e-057.44e-05
speciesLactobacillus_amylovorus0.0953.68e-057.86e-05
speciesPrevotella_copri0.0953.79e-058.06e-05
speciesBilophila_wadsworthia0.0953.91e-058.28e-05
orderPasteurellales0.0954e-058.39e-05
familyPasteurellaceae0.0954e-058.39e-05
genusHaemophilus0.0944.42e-059.23e-05
familyStreptococcaceae0.0944.86e-050.000101
speciesLactobacillus_sanfranciscensis0.0944.87e-050.000101
speciesVeillonella_dispar0.0935.14e-050.000106
speciesEubacterium_limosum0.0935.98e-050.000123
speciesBacteroides_xylanisolvens0.0926.63e-050.000135
speciesEubacterium_biforme-0.0926.75e-050.000137
familyCampylobacteraceae0.0926.81e-050.000138
genusCampylobacter0.0926.97e-050.000141
speciesAlistipes_onderdonkii-0.0917.88e-050.000158
genusPeptoniphilus0.0918.09e-050.000162
familyClostridiales_Family_XI_Incertae_Sedis0.099.13e-050.000182
genusStreptococcus0.090.0001060.00021
speciesParabacteroides_merdae-0.0890.0001120.000221
genusFaecalibacterium-0.0890.0001210.000237
speciesFaecalibacterium_prausnitzii-0.0890.0001210.000237
speciesRuminococcus_champanellensis-0.0870.0001520.000296
genusPorphyromonas0.0870.000170.00033
orderBacillales0.0870.0001750.000337
speciesEnterobacteria_phage_HK5440.0870.0001750.000337
speciesBacteroides_coprocola0.0860.0001880.000361
speciesEggerthella_lenta0.0860.0001910.000365
genusProteus0.0860.0001990.000379
speciesRoseburia_intestinalis-0.0850.0002380.000451
speciesProteus_mirabilis0.0850.0002490.00047
speciesGemella_morbillorum0.0830.0003060.000575
speciesErysipelotrichaceae_bacterium_2_2_44A0.0830.0003430.000642
speciesVeillonella_atypica0.0820.0003670.000685
speciesBacteroides_oleiciplenus0.0820.0003750.000697
speciesMegasphaera_elsdenii0.0820.0004010.000742
speciesAcidaminococcus_fermentans0.0810.0004230.00078
familyPropionibacteriaceae-0.0810.0004310.000792
speciesAnaerotruncus_colihominis0.0810.0004530.000829
speciesClostridium_asparagiforme0.0810.0004590.000836
speciesCoprobacillus_sp_29_10.0810.000480.000871
genusRuminococcus-0.080.0005150.000931
speciesParabacteroides_johnsonii0.080.0005240.000944
speciesLactobacillus_plantarum0.080.0005480.000983
familyLachnospiraceae-0.080.000570.00102
speciesLactococcus_phage_P680-0.0790.0006030.00107
speciesLactobacillus_oris0.0770.0008560.00152
speciesClostridium_sp_ATCC_BAA_4420.0770.0008840.00156
speciesBacteroides_finegoldii0.0750.001090.00192
speciesPeptostreptococcus_stomatis0.0750.001110.00195
speciesAggregatibacter_segnis0.0750.00120.0021
speciesBacteroides_sp_3_1_190.0750.001230.00213
speciesLachnospiraceae_bacterium_1_4_56FAA0.0750.001230.00213
genusAnaerostipes-0.0740.001280.00221
speciesLactobacillus_crispatus0.0730.001490.00257
speciesRuminococcus_obeum-0.0730.001620.00278
speciesLactobacillus_vaginalis0.0710.002220.0038
speciesEubacterium_ventriosum-0.070.00260.00443
speciesPropionibacterium_freudenreichii-0.0690.002820.00479
speciesCollinsella_tanakaei0.0690.003030.00513
familyPorphyromonadaceae-0.0680.00320.00539
genusLambdalikevirus0.0680.003250.00546
speciesEubacterium_dolichum0.0670.003890.00651
speciesLactococcus_phage_jm2-0.0670.003960.0066
speciesLachnospiraceae_bacterium_1_1_57FAA0.0670.0040.00665
speciesBifidobacterium_angulatum-0.0660.004080.00676
speciesMegamonas_funiformis0.0660.004190.00691
speciesParabacteroides_sp_D13-0.0660.00440.00724
speciesMethanobrevibacter_unclassified-0.0660.004570.00749
speciesCampylobacter_concisus0.0650.004830.00789
speciesBlautia_producta0.0650.004970.00809
speciesOdoribacter_unclassified-0.0650.005150.00835
speciesBlautia_hydrogenotrophica-0.0640.005280.00853
speciesClostridium_sp_L2_50-0.0640.005430.00875
familySutterellaceae-0.0640.005490.00878
speciesBifidobacterium_catenulatum-0.0640.005490.00878
genusPhascolarctobacterium-0.0640.00560.0089
speciesPhascolarctobacterium_succinatutens-0.0640.00560.0089
speciesOscillibacter_sp_KLE_1745-0.0640.005720.00906
genusPropionibacterium-0.0630.006540.0103
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0630.006790.0107
genusSiphoviridae_noname-0.0630.006810.0107
speciesLactobacillus_gasseri0.0620.006930.0108
speciesLactococcus_phage_phi7-0.0620.00730.0114
speciesErysipelotrichaceae_bacterium_21_3-0.0610.0080.0124
genusAcidaminococcus0.0610.008340.0129
speciesAlistipes_finegoldii-0.0610.008450.013
speciesRoseburia_unclassified-0.0610.008640.0133
speciesAlistipes_indistinctus-0.060.008910.0137
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.060.009490.0145
genusCatenibacterium-0.060.009620.0146
speciesCatenibacterium_mitsuokai-0.060.009620.0146
classNegativicutes0.0590.01030.0155
orderSelenomonadales0.0590.01030.0155
genusAggregatibacter0.0590.01040.0156
speciesBacteroides_massiliensis0.0590.01090.0163
speciesBacteroides_salanitronis-0.0590.0110.0164
speciesBifidobacterium_breve0.0590.01110.0165
genusClostridiaceae_noname0.0580.01140.0169
speciesClostridiaceae_bacterium_JC1180.0580.01140.0169
speciesBacteroides_ovatus0.0580.01180.0174
phylumViruses_noname-0.0570.01330.0195
classViruses_noname-0.0570.01330.0195
speciesEubacterium_cylindroides-0.0560.01550.0227
genusBurkholderiales_noname0.0560.0160.0232
speciesBurkholderiales_bacterium_1_1_470.0560.0160.0232
speciesOlsenella_unclassified-0.0550.01710.0248
speciesLactobacillus_fermentum0.0550.01740.0251
speciesEubacterium_eligens-0.0550.0180.0259
speciesPorphyromonas_asaccharolytica0.0540.01940.0278
familyBurkholderiales_noname0.0540.02050.0293
orderCaudovirales-0.0530.0220.0314
speciesBifidobacterium_animalis-0.0530.02220.0316
speciesTuricibacter_unclassified-0.0530.02310.0327
familyPodoviridae0.0520.0250.0353
genusParvimonas0.050.02920.041
speciesParvimonas_unclassified0.050.02920.041
genusDialister-0.050.03020.0423
speciesDesulfovibrio_piger-0.0490.03280.0458
speciesParabacteroides_unclassified0.0490.03330.0464
speciesErysipelotrichaceae_bacterium_3_1_530.0490.03450.0479
genusRoseburia-0.0480.03790.0525
familyActinomycetaceae0.0480.03820.0527
speciesStreptococcus_gordonii0.0480.03840.0528
genusTuricibacter-0.0480.03880.0532
speciesEggerthella_sp_1_3_56FAA-0.0480.03980.0545
speciesBacteroides_caccae0.0470.04070.0555
genusOlsenella-0.0470.04110.0559
genusAcidaminococcaceae_unclassified-0.0470.04330.0587
orderCoriobacteriales-0.0460.0450.0607
familyCoriobacteriaceae-0.0460.0450.0607
orderBurkholderiales-0.0460.04620.0619
genusMyoviridae_noname0.0460.04620.0619
genusLeuconostoc0.0460.04840.0647
speciesStreptococcus_vestibularis0.0460.04860.0648
speciesOdoribacter_laneus0.0450.05050.0671
speciesLactobacillus_acidophilus-0.0450.05270.0697
speciesBacteroides_clarus0.0450.05270.0697
speciesDialister_invisus-0.0440.05460.072
speciesLactococcus_lactis-0.0430.06010.079
speciesPeptostreptococcus_anaerobius0.0420.0680.0892
speciesAlistipes_sp_AP11-0.0420.06830.0893
speciesDorea_unclassified-0.0420.06910.0901
genusParasutterella0.0420.07040.0913
speciesParasutterella_excrementihominis0.0420.07040.0913
genusActinomyces0.0420.07190.093
classErysipelotrichia0.0410.07330.094
orderErysipelotrichales0.0410.07330.094
familyErysipelotrichaceae0.0410.07330.094
speciesLactobacillus_rhamnosus-0.0410.07630.0976
speciesHaemophilus_paraphrohaemolyticus0.040.08270.105
speciesTuricibacter_sanguinis-0.040.08340.106
speciesSubdoligranulum_sp_4_3_54A2FAA0.040.08460.107
speciesOscillibacter_sp_KLE_1728-0.040.08630.109
classBetaproteobacteria-0.0390.08810.111
speciesParabacteroides_distasonis0.0390.0930.117
genusTunalikevirus0.0380.1020.128
speciesBacteroides_barnesiae-0.0380.1040.13
speciesBacteroides_eggerthii0.0370.1060.132
genusActinobacillus0.0360.1220.152
speciesActinobacillus_unclassified0.0360.1220.152
orderAeromonadales0.0360.1230.152
familyAcidaminococcaceae-0.0350.1310.162
speciesStreptococcus_parasanguinis-0.0350.1340.165
speciesBacteroides_dorei-0.0340.1410.173
speciesLactococcus_phage_bIL67-0.0340.1430.175
familyMicrococcaceae0.0330.1490.182
speciesBacteroides_sp_1_1_6-0.0330.1510.184
speciesStreptococcus_mutans0.0330.1530.186
genusRothia0.0330.1550.188
speciesRothia_mucilaginosa0.0330.1550.188
speciesBacteroides_sp_2_1_22-0.0330.1560.188
speciesRuminococcus_bromii-0.0320.1630.196
phylumBacteroidetes0.0320.1680.201
classBacteroidia0.0320.1680.201
orderBacteroidales0.0320.1680.201
genusGordonibacter-0.0310.1790.213
speciesGordonibacter_pamelaeae-0.0310.1790.213
speciesBifidobacterium_bifidum0.0310.1840.218
speciesLactococcus_phage_936_sensu_lato-0.030.1910.226
orderViruses_noname-0.030.1950.23
speciesKlebsiella_phage_KP360.0290.2040.24
speciesRoseburia_inulinivorans-0.0290.2070.243
speciesStreptococcus_sanguinis0.0280.2190.256
genusLachnospiraceae_noname0.0280.2310.27
speciesSutterella_parvirubra0.0270.2460.286
speciesErysipelotrichaceae_bacterium_6_1_450.0270.2460.286
orderActinomycetales0.0250.2730.317
speciesClostridium_spiroforme-0.0240.2980.344
speciesBacteroides_faecis0.0240.2980.344
speciesRuminococcus_torques0.0240.30.345
speciesAcidaminococcus_unclassified-0.0240.3010.346
speciesAlistipes_unclassified-0.0230.320.367
genusMethanosphaera-0.0230.3220.367
speciesMethanosphaera_stadtmanae-0.0230.3220.367
genusSutterellaceae_unclassified-0.0220.3310.376
speciesPeptostreptococcaceae_noname_unclassified-0.0220.3390.385
speciesBacteroides_coprophilus0.0220.3440.389
speciesBacteroides_vulgatus0.0220.3520.397
genusOxalobacter-0.0210.3590.403
speciesOxalobacter_formigenes-0.0210.3590.403
familyPrevotellaceae0.0210.3660.41
speciesBacteroides_sp_4_3_47FAA0.0210.370.414
genusStaphylococcus-0.020.3890.434
familyOxalobacteraceae-0.020.390.434
orderPseudomonadales0.020.3950.439
speciesLactobacillus_delbrueckii-0.020.3990.442
genusSlackia0.0190.4180.462
speciesRuminococcus_callidus0.0190.4230.466
genusButyricicoccus0.0160.4960.544
speciesButyricicoccus_pullicaecorum0.0160.4960.544
speciesBifidobacterium_longum-0.0160.4980.545
genusCoriobacteriaceae_noname0.0150.5080.555
speciesCollinsella_unclassified-0.0150.5250.572
speciesHoldemania_filiformis-0.0140.5360.583
speciesHoldemania_unclassified-0.0140.5410.587
speciesCollinsella_intestinalis0.0130.5630.609
speciesClostridium_sp_KLE_1755-0.0130.5670.612
familySuccinivibrionaceae-0.0120.5930.639
speciesHaemophilus_sputorum0.0120.5960.641
genusParabacteroides-0.0120.6060.65
speciesLactobacillus_casei_paracasei-0.0120.6080.65
speciesHoldemania_sp_AP20.0120.6090.65
speciesBacteroides_fluxus0.0110.6240.665
speciesCoriobacteriaceae_bacterium_phI0.0110.6390.679
familyStaphylococcaceae-0.0110.6410.68
genusBifidobacterium-0.010.6590.697
speciesLactobacillus_ruminis-0.010.6750.713
speciesRuminococcus_sp_JC3040.010.680.716
speciesSlackia_piriformis-0.0090.710.746
speciesEubacterium_sp_3_1_31-0.0080.7180.753
familyViruses_noname0.0080.7220.754
genusViruses_noname0.0080.7220.754
genusSuccinatimonas-0.0080.7360.765
speciesSuccinatimonas_hippei-0.0080.7360.765
speciesParabacteroides_sp_20_3-0.0070.7590.787
genusHoldemania0.0070.7650.792
speciesDesulfovibrio_desulfuricans-0.0070.7760.801
orderBifidobacteriales-0.0060.7890.81
familyBifidobacteriaceae-0.0060.7890.81
genusDesulfovibrio-0.0060.7890.81
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0060.8030.822
speciesMitsuokella_multacida0.0060.8050.822
genusErysipelotrichaceae_noname-0.0060.810.826
speciesDialister_succinatiphilus0.0050.840.854
genusButyricimonas0.0040.8480.859
speciesButyricimonas_synergistica0.0040.8480.859
phylumActinobacteria-0.0040.8620.869
classActinobacteria-0.0040.8620.869
speciesBacteroides_cellulosilyticus-0.0030.8940.9
genusLactococcus0.0010.9610.965
speciesLactobacillus_reuteri-0.0010.9740.976
speciesStreptococcus_phage_Sfi210.0010.9810.981
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.004801762998090.001287474546021.31927237861e-0710273.36644
Crohns diseaseSpain17660.01499260503180.00753268082050.000734734462364381312.6783
Type II diabetesChina1831850.02237396084760.009526513350430.0033169578578125028.26861
Liver cirrhosisChina1201140.02322941193160.004275934926180.107700134441694356.9149
ObesityDenmark1691230.001829868159610.0004971182066590.1730286995781009333.1886
Rheumatoid arthritisChina127980.008381058511880.005284584856340.3290226292681287342.9286
Type II diabetesSweden53920.002618302643310.003767698748320.5418306616961717358.1544
Ulcerative colitisSpain78660.001624998466230.00753268082050.7437760215932455681.0055
Colorectal cancerAustria64350.02707319646080.0105665246490.9120710126352740492.7189
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382