MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-05 07:49:18 PST
Job id & description: 2072, traD_protein
Query type: protein
Count queries & homologs: 1, 7
Min % identity & max e-value: 90%, 1e-5
Min % query & target coverage: 90%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
traD359094CompleteK03205COG3505ProteobacteriaEscherichia100.0100.0100.0
traD330263CompleteK03205COG3505ProteobacteriaEscherichia100.0100.095.39
traD341530CompleteK03205COG3505ProteobacteriaEscherichia100.0100.095.22
traD319514CompleteK03205COG3505ProteobacteriaEscherichia100.0100.094.24
traD315842CompleteK03205COG3505ProteobacteriaEscherichia100.0100.092.4
traD357726CompleteK03205COG3505ProteobacteriaEscherichia99.3100.094.99
traD308650CompleteK03205COG3505ProteobacteriaEscherichia100.0100.091.7
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEscherichia_coli0.652.52e-2251.19e-222
genusEscherichia0.6449.76e-2202.3e-217
orderEnterobacteriales0.5918.59e-1771.01e-174
familyEnterobacteriaceae0.5918.59e-1771.01e-174
classGammaproteobacteria0.5431.32e-1431.25e-141
phylumProteobacteria0.411.28e-761.01e-74
speciesEscherichia_unclassified0.3313.63e-492.45e-47
speciesClostridium_nexile0.2972.49e-391.47e-37
speciesRuminococcus_gnavus0.2931.94e-381.02e-36
speciesClostridium_hathewayi0.2871.01e-364.77e-35
speciesClostridium_bolteae0.285.36e-352.3e-33
genusKlebsiella0.2759.49e-343.73e-32
genusCoprobacillus0.2741.4e-335.08e-32
speciesKlebsiella_pneumoniae0.2589.13e-303.08e-28
speciesCoprobacillus_unclassified0.255.92e-281.86e-26
familyFusobacteriaceae0.2497.97e-282.35e-26
speciesBacteroides_fragilis0.2447.91e-272.18e-25
genusFusobacterium0.2448.3e-272.18e-25
phylumFusobacteria0.2449.94e-272.23e-25
classFusobacteriia0.2449.94e-272.23e-25
orderFusobacteriales0.2449.94e-272.23e-25
speciesClostridium_symbiosum0.2331.58e-243.39e-23
genusFlavonifractor0.2191.16e-212.28e-20
speciesFlavonifractor_plautii0.2191.16e-212.28e-20
familyClostridiaceae0.2181.56e-212.95e-20
speciesClostridium_ramosum0.2163.64e-216.61e-20
genusClostridium0.2155.05e-218.83e-20
speciesClostridiales_bacterium_1_7_47FAA0.2147.99e-211.35e-19
speciesEubacterium_siraeum-0.2112.69e-204.38e-19
speciesSubdoligranulum_unclassified-0.2095.97e-209.39e-19
genusCoprococcus-0.2011.58e-182.41e-17
genusSubdoligranulum-0.22.35e-183.47e-17
genusEnterobacter0.22.93e-184.19e-17
speciesEggerthella_unclassified0.1976.83e-189.48e-17
genusMegasphaera0.1961.38e-171.86e-16
speciesEnterobacter_cloacae0.1951.52e-171.99e-16
genusPantoea0.1942.93e-173.64e-16
speciesPantoea_unclassified0.1942.93e-173.64e-16
genusCitrobacter0.1934.12e-174.99e-16
genusEggerthella0.1891.52e-161.79e-15
speciesCitrobacter_freundii0.1849.51e-161.09e-14
speciesClostridium_citroniae0.1831.46e-151.64e-14
genusButyrivibrio-0.1822.04e-152.24e-14
speciesEubacterium_ramulus-0.1795.51e-155.91e-14
genusEubacterium-0.1771.21e-141.27e-13
familyEubacteriaceae-0.1771.25e-141.28e-13
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1761.7e-141.71e-13
speciesCitrobacter_unclassified0.1743.64e-143.58e-13
speciesFusobacterium_ulcerans0.1656.39e-136.16e-12
genusBarnesiella-0.1641.05e-129.72e-12
speciesBarnesiella_intestinihominis-0.1641.05e-129.72e-12
speciesEubacterium_rectale-0.1631.25e-121.13e-11
speciesAnaerotruncus_unclassified-0.1612.84e-122.53e-11
speciesLachnospiraceae_bacterium_6_1_63FAA0.163.15e-122.75e-11
speciesCoprococcus_sp_ART55_1-0.1594.69e-124.02e-11
genusPseudoflavonifractor-0.1594.96e-124.11e-11
speciesPseudoflavonifractor_capillosus-0.1594.96e-124.11e-11
familyRuminococcaceae-0.1561.16e-119.44e-11
speciesBifidobacterium_adolescentis-0.1561.37e-111.09e-10
classClostridia-0.1551.41e-111.09e-10
orderClostridiales-0.1551.41e-111.09e-10
phylumSynergistetes0.1532.68e-111.95e-10
classSynergistia0.1532.68e-111.95e-10
orderSynergistales0.1532.68e-111.95e-10
familySynergistaceae0.1532.68e-111.95e-10
speciesCoprococcus_comes-0.157.53e-115.39e-10
speciesDorea_longicatena-0.1498.63e-116.08e-10
genusPyramidobacter0.1491.06e-107.25e-10
speciesPyramidobacter_piscolens0.1491.06e-107.25e-10
speciesLactobacillus_salivarius0.1471.58e-101.07e-09
genusBlautia0.1462.57e-101.71e-09
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1443.66e-102.4e-09
familyClostridiales_noname0.1444.16e-102.69e-09
speciesMegasphaera_unclassified0.1444.27e-102.72e-09
speciesRoseburia_hominis-0.1435e-103.15e-09
speciesCoprococcus_catus-0.1435.67e-103.52e-09
speciesAlistipes_senegalensis-0.1426.26e-103.84e-09
speciesKlebsiella_unclassified0.1426.81e-104.12e-09
speciesLachnospiraceae_bacterium_2_1_58FAA0.1418.34e-104.98e-09
genusRuminococcaceae_noname-0.1418.61e-105.02e-09
speciesRuminococcaceae_bacterium_D16-0.1418.61e-105.02e-09
speciesBifidobacterium_pseudocatenulatum0.1419.41e-105.42e-09
speciesSutterella_wadsworthensis-0.1411.01e-095.68e-09
speciesEubacterium_hallii-0.1411.01e-095.68e-09
speciesStreptococcus_thermophilus-0.141.17e-096.5e-09
speciesFusobacterium_varium0.1391.48e-098.12e-09
genusWeissella0.1391.61e-098.73e-09
genusClostridiales_noname0.1382.24e-091.19e-08
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1382.24e-091.19e-08
familyBacteroidales_noname-0.1363.3e-091.69e-08
genusBacteroidales_noname-0.1363.3e-091.69e-08
speciesBacteroidales_bacterium_ph8-0.1363.3e-091.69e-08
speciesBacteroides_thetaiotaomicron0.1363.47e-091.76e-08
speciesLactobacillus_mucosae0.1363.89e-091.95e-08
speciesAnaerostipes_unclassified0.1354.56e-092.27e-08
genusSutterella-0.1355.03e-092.47e-08
speciesMegasphaera_micronuciformis0.1346.65e-093.24e-08
speciesFusobacterium_nucleatum0.1321.1e-085.3e-08
familyEnterococcaceae0.1311.17e-085.58e-08
speciesClostridium_clostridioforme0.1311.2e-085.66e-08
speciesFusobacterium_mortiferum0.1311.23e-085.75e-08
genusEnterococcus0.1311.29e-085.97e-08
genusDorea-0.1311.42e-086.51e-08
genusCoprobacter-0.131.61e-087.24e-08
speciesCoprobacter_fastidiosus-0.131.61e-087.24e-08
speciesButyrivibrio_unclassified-0.1292.25e-081e-07
speciesBacteroides_stercoris0.1282.77e-081.22e-07
speciesClostridium_leptum-0.1283.13e-081.37e-07
speciesBacteroides_pectinophilus-0.1264.38e-081.9e-07
speciesMegamonas_unclassified0.1256.28e-082.67e-07
speciesBilophila_unclassified0.1256.29e-082.67e-07
genusMegamonas0.1256.57e-082.77e-07
speciesStreptococcus_anginosus0.1239e-083.76e-07
genusBilophila0.1239.99e-084.14e-07
phylumFirmicutes-0.1221.08e-074.43e-07
speciesParaprevotella_unclassified-0.1221.17e-074.76e-07
familyBacteroidaceae0.1221.23e-074.92e-07
genusBacteroides0.1221.23e-074.92e-07
speciesKlebsiella_oxytoca0.1211.54e-076.11e-07
speciesPrevotella_stercorea0.121.89e-077.43e-07
speciesStreptococcus_infantarius0.121.92e-077.49e-07
speciesAnaerostipes_hadrus-0.121.97e-077.62e-07
genusParaprevotella-0.122.04e-077.83e-07
orderLactobacillales0.1192.24e-078.53e-07
speciesAlistipes_shahii-0.1192.27e-078.57e-07
classBacilli0.1192.53e-079.48e-07
speciesVeillonella_parvula0.1183.17e-071.18e-06
speciesBacteroides_nordii0.1183.45e-071.27e-06
genusPrevotella0.1173.58e-071.31e-06
speciesLachnospiraceae_bacterium_5_1_57FAA0.1173.81e-071.38e-06
speciesC2likevirus_unclassified-0.1173.97e-071.43e-06
genusC2likevirus-0.1164.59e-071.64e-06
familyPeptostreptococcaceae0.1155.58e-071.98e-06
familyLeuconostocaceae0.1155.84e-072.06e-06
speciesClostridium_perfringens0.1156.57e-072.26e-06
speciesButyrivibrio_crossotus-0.1156.6e-072.26e-06
genusSolobacterium0.1156.69e-072.26e-06
speciesSolobacterium_moorei0.1156.69e-072.26e-06
speciesWeissella_confusa0.1156.72e-072.26e-06
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1146.89e-072.26e-06
phylumVerrucomicrobia-0.1146.99e-072.26e-06
classVerrucomicrobiae-0.1146.99e-072.26e-06
orderVerrucomicrobiales-0.1146.99e-072.26e-06
familyVerrucomicrobiaceae-0.1146.99e-072.26e-06
genusAkkermansia-0.1146.99e-072.26e-06
speciesAkkermansia_muciniphila-0.1146.99e-072.26e-06
speciesParaprevotella_xylaniphila-0.1138.89e-072.85e-06
speciesPrevotella_bivia0.1139.41e-073e-06
speciesAlistipes_putredinis-0.1139.89e-073.13e-06
speciesErysipelotrichaceae_bacterium_2_2_44A0.1131.02e-063.21e-06
familySiphoviridae-0.1131.03e-063.22e-06
speciesCoprococcus_eutactus-0.1121.23e-063.82e-06
familyLactobacillaceae0.1121.31e-064.04e-06
speciesRuminococcus_sp_5_1_39BFAA-0.1121.32e-064.05e-06
speciesCollinsella_aerofaciens-0.1111.51e-064.6e-06
speciesMitsuokella_unclassified-0.111.91e-065.78e-06
speciesBacteroides_plebeius0.112.01e-065.98e-06
speciesAcidaminococcus_intestini0.112.02e-065.98e-06
classDeltaproteobacteria0.112.04e-065.98e-06
orderDesulfovibrionales0.112.04e-065.98e-06
familyDesulfovibrionaceae0.112.04e-065.98e-06
speciesRuminococcus_lactaris-0.1092.16e-066.29e-06
genusLactobacillus0.1092.21e-066.4e-06
speciesLactococcus_garvieae0.1092.29e-066.58e-06
speciesBacteroides_uniformis-0.1092.3e-066.58e-06
speciesParaprevotella_clara-0.1083.11e-068.84e-06
speciesPorphyromonas_uenonis0.1054.99e-061.41e-05
speciesEnterococcus_faecium0.1055.22e-061.47e-05
speciesEggerthella_lenta0.1055.37e-061.5e-05
speciesAlistipes_sp_HGB5-0.1046.91e-061.92e-05
speciesEubacterium_limosum0.1046.98e-061.93e-05
genusVeillonella0.1037.68e-062.11e-05
speciesWeissella_cibaria0.1038.24e-062.25e-05
genusPeptostreptococcus0.1038.39e-062.28e-05
speciesRoseburia_intestinalis-0.1038.44e-062.28e-05
speciesEnterobacter_aerogenes0.1038.52e-062.28e-05
genusMitsuokella-0.1028.97e-062.39e-05
speciesStreptococcus_lutetiensis0.1021.05e-052.78e-05
genusFaecalibacterium-0.1021.06e-052.78e-05
speciesFaecalibacterium_prausnitzii-0.1021.06e-052.78e-05
speciesPrevotella_buccae0.1011.14e-052.97e-05
speciesLachnospiraceae_bacterium_2_1_46FAA0.1011.19e-053.09e-05
genusPeptoniphilus0.1011.21e-053.12e-05
speciesClostridium_bartlettii0.11.61e-054.13e-05
speciesStreptococcus_pasteurianus0.0991.63e-054.16e-05
genusPeptostreptococcaceae_noname0.0991.86e-054.72e-05
speciesEnterococcus_faecalis0.0982.1e-055.3e-05
speciesAnaerotruncus_colihominis0.0982.13e-055.35e-05
genusMorganella0.0982.19e-055.44e-05
speciesMorganella_morganii0.0982.19e-055.44e-05
speciesClostridium_asparagiforme0.0972.68e-056.62e-05
genusAdlercreutzia-0.0972.9e-057.08e-05
speciesAdlercreutzia_equolifaciens-0.0972.9e-057.08e-05
speciesDorea_formicigenerans-0.0972.91e-057.08e-05
genusCollinsella-0.0962.95e-057.14e-05
familyClostridiales_Family_XI_Incertae_Sedis0.0962.97e-057.15e-05
genusPorphyromonas0.0963.25e-057.79e-05
speciesStreptococcus_salivarius0.0953.58e-058.53e-05
phylumEuryarchaeota-0.0954.06e-059.63e-05
classMethanobacteria-0.0944.67e-050.000109
orderMethanobacteriales-0.0944.67e-050.000109
familyMethanobacteriaceae-0.0944.67e-050.000109
speciesStreptococcus_mitis_oralis_pneumoniae0.0944.87e-050.000113
speciesMethanobrevibacter_smithii-0.0935.18e-050.00012
speciesLactobacillus_amylovorus0.0935.46e-050.000126
speciesCoprobacillus_sp_D60.0935.56e-050.000127
genusMethanobrevibacter-0.0936.03e-050.000137
speciesEubacterium_biforme-0.0926.93e-050.000157
classEpsilonproteobacteria0.0918.18e-050.000184
orderCampylobacterales0.0918.18e-050.000184
familyCampylobacteraceae0.0918.89e-050.000199
speciesBifidobacterium_dentium0.099.58e-050.000213
genusCampylobacter0.090.0001030.000228
speciesMegamonas_rupellensis0.0890.0001090.00024
familyVeillonellaceae0.0890.000110.000241
speciesOdoribacter_splanchnicus-0.0890.0001120.000245
familyRikenellaceae-0.0880.000140.000303
genusAlistipes-0.0880.000140.000303
speciesParabacteroides_goldsteinii0.0870.0001570.000338
speciesBilophila_wadsworthia0.0870.0001610.000345
speciesCoprobacillus_sp_29_10.0870.0001640.00035
genusOdoribacter-0.0870.0001760.000374
speciesAcidaminococcus_fermentans0.0860.0001860.000394
speciesMegasphaera_elsdenii0.0860.0001960.000413
familyBacillales_noname0.0860.0002020.000422
genusGemella0.0860.0002020.000422
speciesParabacteroides_merdae-0.0850.0002250.000468
speciesBacteroides_salyersiae0.0850.0002440.000505
speciesGemella_morbillorum0.0830.0003530.000728
speciesBacteroides_oleiciplenus0.0820.000380.00078
speciesLachnospiraceae_bacterium_1_4_56FAA0.0820.0003880.000793
speciesBacteroides_intestinalis0.0820.0003920.000798
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0820.0004010.000812
speciesMegamonas_hypermegale0.0810.0004570.000922
genusProteus0.080.0005090.00102
speciesPeptostreptococcus_stomatis0.080.0005640.00113
familyMyoviridae0.0790.0006280.00125
speciesEubacterium_dolichum0.0780.0006880.00136
genusAcidaminococcus0.0780.0007310.00144
speciesBacteroides_xylanisolvens0.0770.0008250.00162
speciesStreptococcus_australis0.0770.0008280.00162
speciesBlautia_producta0.0770.0008360.00163
speciesVeillonella_dispar0.0770.0008610.00167
speciesAlistipes_onderdonkii-0.0760.0009380.00181
speciesProteus_mirabilis0.0760.0009860.0019
genusClostridiaceae_noname0.0760.001040.00199
speciesClostridiaceae_bacterium_JC1180.0760.001040.00199
genusRuminococcus-0.0750.001180.00225
genusAnaerotruncus-0.0750.001190.00226
speciesParabacteroides_unclassified0.0750.00120.00227
speciesPropionibacterium_freudenreichii-0.0740.00130.00244
familyPropionibacteriaceae-0.0740.00140.00262
speciesEubacterium_ventriosum-0.0730.001510.00282
speciesPrevotella_copri0.0730.001550.00288
speciesRuminococcus_champanellensis-0.0730.001570.00291
phylumViruses_noname-0.0730.001610.00296
classViruses_noname-0.0730.001610.00296
speciesEubacterium_eligens-0.0730.001650.00302
speciesVeillonella_unclassified0.0720.001820.00332
speciesRuminococcus_obeum-0.0720.001890.00343
genusStreptococcus0.0720.001930.00349
familyLachnospiraceae-0.0720.001950.00351
speciesLactobacillus_oris0.0710.002060.0037
speciesClostridium_sp_L2_50-0.0710.002070.0037
speciesLactococcus_phage_P680-0.0710.002110.00376
familyStreptococcaceae0.0710.002140.0038
speciesVeillonella_atypica0.0710.002180.00385
speciesBacteroides_sp_3_1_190.070.002290.00403
speciesLactobacillus_crispatus0.070.002550.00447
speciesPorphyromonas_asaccharolytica0.0690.002660.00465
speciesClostridium_sp_ATCC_BAA_4420.0690.002820.00491
orderCaudovirales-0.0690.002840.00493
genusCatenibacterium-0.0680.003280.00565
speciesCatenibacterium_mitsuokai-0.0680.003280.00565
speciesLactobacillus_sanfranciscensis0.0680.003340.00573
orderBacillales0.0680.003440.00588
speciesLactococcus_phage_phi7-0.0670.003820.00651
speciesParabacteroides_johnsonii0.0660.004410.00749
speciesOscillibacter_unclassified-0.0660.004480.00758
genusPropionibacterium-0.0650.004950.00834
speciesErysipelotrichaceae_bacterium_3_1_530.0640.005450.00915
speciesSubdoligranulum_sp_4_3_54A2FAA0.0640.005490.00919
familyOscillospiraceae-0.0640.005630.00936
genusOscillibacter-0.0640.005630.00936
genusRoseburia-0.0640.005790.00959
speciesBifidobacterium_breve0.0630.00610.0101
speciesLactococcus_lactis-0.0630.006140.0101
speciesLactobacillus_vaginalis0.0620.006990.0115
speciesBacteroides_coprocola0.0610.007830.0128
speciesAggregatibacter_segnis0.0610.008690.0141
speciesBifidobacterium_angulatum-0.060.00890.0144
classNegativicutes0.060.008950.0144
orderSelenomonadales0.060.008950.0144
speciesOdoribacter_unclassified-0.060.009230.0148
speciesHaemophilus_parainfluenzae0.0590.01050.0168
speciesBifidobacterium_catenulatum-0.0590.0110.0175
orderPasteurellales0.0590.01110.0176
familyPasteurellaceae0.0590.01110.0176
speciesCampylobacter_concisus0.0580.01160.0183
speciesKlebsiella_sp_MS_92_30.0580.01160.0183
speciesAlistipes_finegoldii-0.0580.01170.0183
speciesLactococcus_phage_jm2-0.0580.0120.0188
speciesLactobacillus_gasseri0.0580.01220.019
genusHaemophilus0.0580.01240.0193
speciesPeptostreptococcus_anaerobius0.0580.01270.0197
speciesBacteroides_ovatus0.0570.01310.0202
speciesLachnospiraceae_bacterium_1_1_57FAA0.0570.01330.0204
speciesCollinsella_tanakaei0.0570.01360.0208
genusParvimonas0.0560.01490.0228
speciesParvimonas_unclassified0.0560.0150.0228
speciesDesulfovibrio_piger-0.0560.01570.0238
familySutterellaceae-0.0550.01730.0262
speciesErysipelotrichaceae_bacterium_6_1_450.0550.0180.0271
genusPhascolarctobacterium-0.0540.0190.0285
speciesPhascolarctobacterium_succinatutens-0.0540.0190.0285
familyPodoviridae0.0540.01920.0286
speciesTuricibacter_unclassified-0.0540.01920.0286
speciesLeuconostoc_lactis0.0540.01940.0287
speciesOdoribacter_laneus0.0540.01940.0287
speciesEnterobacteria_phage_HK5440.0530.02090.0308
genusBurkholderiales_noname0.0530.02150.0315
speciesBurkholderiales_bacterium_1_1_470.0530.02150.0315
speciesParabacteroides_sp_D13-0.0530.02240.0327
genusSiphoviridae_noname-0.0520.02550.0371
familyBurkholderiales_noname0.0510.02650.0385
speciesRuminococcus_torques0.0510.02690.0389
familyActinomycetaceae0.0510.02830.0408
classErysipelotrichia0.0510.02870.041
orderErysipelotrichales0.0510.02870.041
familyErysipelotrichaceae0.0510.02870.041
speciesMethanobrevibacter_unclassified-0.0510.02890.0412
speciesLactobacillus_fermentum0.050.03180.0452
genusAggregatibacter0.050.03210.0455
speciesBacteroides_caccae0.0490.03320.0469
speciesAlistipes_indistinctus-0.0490.03560.0502
speciesLactobacillus_plantarum0.0480.03660.0514
genusTuricibacter-0.0480.03740.0524
speciesLactobacillus_rhamnosus-0.0470.04040.0564
speciesBifidobacterium_animalis-0.0470.04230.0589
genusAnaerostipes-0.0470.04270.0591
speciesBacteroides_salanitronis-0.0470.04270.0591
speciesStreptococcus_gordonii0.0450.0520.0718
speciesBlautia_hydrogenotrophica-0.0440.05540.0762
genusActinomyces0.0440.05610.0768
speciesEggerthella_sp_1_3_56FAA-0.0440.05610.0768
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0440.05860.0799
speciesBacteroides_finegoldii0.0420.06690.0909
speciesEubacterium_cylindroides-0.0420.0670.0909
speciesBacteroides_clarus0.0420.06830.0924
speciesRoseburia_unclassified-0.0420.07180.0968
genusParasutterella0.0410.07930.106
speciesParasutterella_excrementihominis0.0410.07930.106
speciesStreptococcus_parasanguinis-0.0410.07950.106
speciesBacteroides_massiliensis0.040.08480.113
speciesRoseburia_inulinivorans-0.040.0850.113
speciesTuricibacter_sanguinis-0.0390.08860.117
speciesStreptococcus_mutans0.0390.09070.12
classBacteroidia0.0390.09290.122
orderBacteroidales0.0390.09290.122
phylumBacteroidetes0.0390.09310.122
genusLachnospiraceae_noname0.0380.09930.13
orderViruses_noname-0.0380.1010.132
speciesBacteroides_vulgatus0.0380.1020.133
speciesParabacteroides_distasonis0.0380.1050.136
speciesLactococcus_phage_bIL67-0.0370.1080.14
speciesOlsenella_unclassified-0.0370.1140.147
speciesOscillibacter_sp_KLE_1745-0.0360.1220.157
speciesKlebsiella_phage_KP36-0.0360.1240.159
orderBurkholderiales-0.0340.1440.184
speciesMegamonas_funiformis0.0340.1440.184
genusDialister-0.0340.1470.187
speciesRuminococcus_bromii-0.0330.1590.202
genusLactococcus-0.0310.1780.225
speciesStreptococcus_vestibularis0.030.1890.239
speciesLactobacillus_acidophilus-0.030.1920.242
genusSlackia0.030.1950.245
orderCoriobacteriales-0.030.1980.247
familyCoriobacteriaceae-0.030.1980.247
speciesLactococcus_phage_936_sensu_lato-0.0290.2040.254
orderAeromonadales0.0280.2180.271
genusCoriobacteriaceae_noname0.0280.2190.271
familyViruses_noname-0.0280.2270.279
familyPorphyromonadaceae-0.0280.2270.279
genusViruses_noname-0.0280.2270.279
speciesBacteroides_barnesiae-0.0270.2420.297
speciesBacteroides_faecis0.0270.2440.298
classBetaproteobacteria-0.0270.2450.299
genusOlsenella-0.0270.250.304
genusLeuconostoc0.0260.2630.319
speciesOscillibacter_sp_KLE_1728-0.0250.2720.329
genusSutterellaceae_unclassified-0.0250.2730.33
genusTunalikevirus-0.0250.2770.334
genusAcidaminococcaceae_unclassified-0.0250.2820.339
speciesDorea_unclassified-0.0250.2870.344
speciesErysipelotrichaceae_bacterium_21_3-0.0240.2910.348
speciesCoriobacteriaceae_bacterium_phI0.0240.2940.35
speciesHaemophilus_paraphrohaemolyticus0.0240.3030.36
genusLambdalikevirus0.0230.320.379
speciesBacteroides_sp_2_1_22-0.0230.3230.382
genusParabacteroides0.0220.3320.392
speciesBacteroides_sp_1_1_6-0.0220.3360.395
genusButyricicoccus0.0220.3460.404
speciesButyricicoccus_pullicaecorum0.0220.3460.404
speciesPeptostreptococcaceae_noname_unclassified-0.0220.3460.404
orderActinomycetales0.0220.3470.404
familyMicrococcaceae0.0220.3480.405
genusRothia0.0210.3590.416
speciesStreptococcus_sanguinis0.0210.3640.421
genusHoldemania0.0210.3650.421
speciesBacteroides_dorei-0.020.3790.436
speciesSutterella_parvirubra0.020.390.448
genusMyoviridae_noname0.020.3920.449
speciesRothia_mucilaginosa0.020.3950.451
speciesBifidobacterium_bifidum0.0190.4120.469
genusGordonibacter-0.0190.4130.469
speciesGordonibacter_pamelaeae-0.0190.4130.469
speciesDialister_invisus-0.0190.4180.473
speciesBacteroides_coprophilus0.0180.4370.493
genusStaphylococcus-0.0180.4430.499
speciesAlistipes_sp_AP11-0.0160.4870.547
genusOxalobacter-0.0160.490.548
speciesOxalobacter_formigenes-0.0160.490.548
speciesRuminococcus_sp_JC3040.0160.4980.556
familyAcidaminococcaceae-0.0150.5080.564
genusActinobacillus0.0150.5090.564
speciesActinobacillus_unclassified0.0150.5090.564
familyOxalobacteraceae-0.0140.540.597
speciesLactobacillus_ruminis-0.0140.5470.603
speciesHoldemania_sp_AP20.0140.5490.604
orderPseudomonadales0.0140.5540.608
genusMethanosphaera-0.0130.570.623
speciesMethanosphaera_stadtmanae-0.0130.570.623
speciesLactobacillus_reuteri-0.0130.5760.628
speciesClostridium_spiroforme-0.0130.5870.638
speciesBacteroides_fluxus0.0120.5950.646
speciesDialister_succinatiphilus-0.0110.6340.686
familySuccinivibrionaceae-0.0110.6430.694
speciesBacteroides_eggerthii0.010.6530.704
familyPrevotellaceae0.010.6740.725
genusErysipelotrichaceae_noname0.0090.6940.744
speciesCollinsella_intestinalis0.0090.7120.762
speciesStreptococcus_phage_Sfi210.0080.7190.768
speciesBifidobacterium_longum-0.0080.7230.77
speciesLactobacillus_casei_paracasei-0.0080.7360.782
familyStaphylococcaceae-0.0080.7420.787
speciesDesulfovibrio_desulfuricans0.0080.7440.787
speciesHoldemania_filiformis-0.0070.7620.805
genusSuccinatimonas-0.0060.7830.823
speciesSuccinatimonas_hippei-0.0060.7830.823
speciesAcidaminococcus_unclassified-0.0060.7920.831
speciesLactobacillus_delbrueckii-0.0060.8050.84
speciesBacteroides_sp_4_3_47FAA0.0060.8070.84
phylumActinobacteria0.0060.8080.84
classActinobacteria0.0060.8080.84
speciesMitsuokella_multacida0.0050.8180.849
speciesEubacterium_sp_3_1_310.0050.8330.862
speciesParabacteroides_sp_20_3-0.0050.8350.862
speciesHaemophilus_sputorum0.0040.8480.874
genusBifidobacterium-0.0040.8520.876
speciesCollinsella_unclassified-0.0040.860.882
speciesAlistipes_unclassified0.0040.8750.896
speciesSlackia_piriformis0.0030.90.919
speciesRuminococcus_callidus0.0030.9130.931
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0020.9160.932
speciesClostridium_sp_KLE_17550.0020.9420.956
speciesBacteroides_cellulosilyticus0.0010.9490.961
genusButyricimonas-0.0010.9630.971
speciesButyricimonas_synergistica-0.0010.9630.971
orderBifidobacteriales0.00.9930.995
familyBifidobacteriaceae0.00.9930.995
genusDesulfovibrio0.00.9930.995
speciesHoldemania_unclassified0.00.9950.995
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.004754384592530.001245899044222.0281158227e-0710573.46478
Crohns diseaseSpain17660.00934171298450.00747391025760.000917319491458407313.5428
Type II diabetesChina1831850.02091241475120.00705972201310.0021842694070421657.1549
Liver cirrhosisChina1201140.02236262930070.003858112960640.1841798195581906664.0465
Rheumatoid arthritisChina127980.007195109897650.00427863607950.192389858379868228.9525
ObesityDenmark1691230.001766162454360.0004876886033350.1937136361841077235.4214
Type II diabetesSweden53920.00237542092720.003710509970050.7249012872252200474.5141
Colorectal cancerAustria64350.02640297154360.01052958736850.8842363426492680190.6787
Ulcerative colitisSpain78660.001619553656160.00747391025760.9284547750942881995.0683
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382