MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-05 07:54:48 PST
Job id & description: 2073, traD_protein_nrg
Query type: protein
Count queries & homologs: 1, 9
Min % identity & max e-value: 70%, 1e-5
Min % query & target coverage: 90%, 90%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
trad359094CompleteK03205COG3505ProteobacteriaEscherichia100.0100.0100.0
trad330263CompleteK03205COG3505ProteobacteriaEscherichia100.0100.095.39
trad341530CompleteK03205COG3505ProteobacteriaEscherichia100.0100.095.22
trad319514CompleteK03205COG3505ProteobacteriaEscherichia100.0100.094.24
trad315842CompleteK03205COG3505ProteobacteriaEscherichia100.0100.092.4
trad357726CompleteK03205COG3505ProteobacteriaEscherichia99.3100.094.99
trad308650CompleteK03205COG3505ProteobacteriaEscherichia100.0100.091.7
trad297161CompleteunknownCOG3505ProteobacteriaKlebsiella100.0100.070.38
trad333916CompleteK03205COG3505unknownunknown100.0100.071.39
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusEscherichia0.6836.51e-2573.07e-254
speciesEscherichia_coli0.6781.7e-2524.01e-250
orderEnterobacteriales0.671.2e-2431.42e-241
familyEnterobacteriaceae0.671.2e-2431.42e-241
classGammaproteobacteria0.629.84e-1999.29e-197
phylumProteobacteria0.4771.2e-1069.44e-105
genusKlebsiella0.3933.01e-702.03e-68
speciesKlebsiella_pneumoniae0.3751.83e-631.08e-61
speciesEscherichia_unclassified0.3744.37e-632.29e-61
speciesClostridium_nexile0.3066.86e-423.24e-40
speciesRuminococcus_gnavus0.2996.14e-402.63e-38
genusEnterobacter0.291.28e-375.03e-36
speciesEnterobacter_cloacae0.2853.05e-361.11e-34
speciesClostridium_hathewayi0.2845.03e-361.7e-34
genusCoprobacillus0.2781.29e-344.06e-33
familyFusobacteriaceae0.2759.19e-342.71e-32
speciesClostridium_bolteae0.2725.79e-331.61e-31
genusFusobacterium0.271.64e-323.78e-31
phylumFusobacteria0.271.68e-323.78e-31
classFusobacteriia0.271.68e-323.78e-31
orderFusobacteriales0.271.68e-323.78e-31
genusPantoea0.2651.71e-313.51e-30
speciesPantoea_unclassified0.2651.71e-313.51e-30
speciesCoprobacillus_unclassified0.2545.46e-291.07e-27
genusCitrobacter0.2472.23e-274.21e-26
speciesBacteroides_fragilis0.2472.66e-274.83e-26
speciesCitrobacter_freundii0.2391.01e-251.77e-24
speciesEubacterium_siraeum-0.2355.58e-259.41e-24
speciesClostridium_symbiosum0.2332.22e-243.61e-23
speciesCitrobacter_unclassified0.2322.79e-244.39e-23
speciesSubdoligranulum_unclassified-0.2314.8e-247.31e-23
genusSubdoligranulum-0.2222.1e-223.1e-21
speciesClostridium_ramosum0.225.06e-227.24e-21
speciesClostridiales_bacterium_1_7_47FAA0.2131.02e-201.42e-19
genusFlavonifractor0.2112.46e-203.23e-19
speciesFlavonifractor_plautii0.2112.46e-203.23e-19
familyClostridiaceae0.2071.29e-191.65e-18
genusMegasphaera0.2071.38e-191.71e-18
genusCoprococcus-0.2062.03e-192.46e-18
genusClostridium0.2052.88e-193.4e-18
genusButyrivibrio-0.2053.27e-193.76e-18
speciesEggerthella_unclassified0.1985.4e-186.07e-17
speciesEubacterium_ramulus-0.1917.43e-178.16e-16
genusEggerthella0.1891.97e-162.11e-15
speciesAnaerotruncus_unclassified-0.1873.5e-163.67e-15
genusPseudoflavonifractor-0.1841.07e-151.07e-14
speciesPseudoflavonifractor_capillosus-0.1841.07e-151.07e-14
speciesClostridium_citroniae0.1822.3e-152.26e-14
genusEubacterium-0.183.9e-153.76e-14
familyEubacteriaceae-0.184.06e-153.83e-14
speciesKlebsiella_oxytoca0.184.74e-154.39e-14
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1781.03e-149.35e-14
genusWeissella0.1771.37e-141.22e-13
speciesEubacterium_rectale-0.1761.52e-141.33e-13
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1734.88e-144.19e-13
genusBarnesiella-0.1735.42e-144.49e-13
speciesBarnesiella_intestinihominis-0.1735.42e-144.49e-13
classClostridia-0.1726.15e-144.92e-13
orderClostridiales-0.1726.15e-144.92e-13
speciesKlebsiella_unclassified0.1726.49e-145.11e-13
familyRuminococcaceae-0.1726.66e-145.15e-13
phylumSynergistetes0.171.27e-139.22e-13
classSynergistia0.171.27e-139.22e-13
orderSynergistales0.171.27e-139.22e-13
familySynergistaceae0.171.27e-139.22e-13
speciesBifidobacterium_adolescentis-0.1691.99e-131.42e-12
speciesFusobacterium_ulcerans0.1682.47e-131.74e-12
genusPyramidobacter0.1673.9e-132.67e-12
speciesPyramidobacter_piscolens0.1673.9e-132.67e-12
speciesCoprococcus_comes-0.1631.52e-121.02e-11
speciesMegamonas_unclassified0.1612.25e-121.47e-11
speciesDorea_longicatena-0.1612.25e-121.47e-11
genusMegamonas0.1612.42e-121.56e-11
genusRuminococcaceae_noname-0.1612.54e-121.6e-11
speciesRuminococcaceae_bacterium_D16-0.1612.54e-121.6e-11
speciesFusobacterium_mortiferum0.163.14e-121.95e-11
speciesLachnospiraceae_bacterium_3_1_46FAA-0.163.23e-121.98e-11
speciesLachnospiraceae_bacterium_6_1_63FAA0.1579.82e-125.94e-11
speciesWeissella_confusa0.1561.12e-116.69e-11
speciesClostridium_leptum-0.1561.26e-117.34e-11
speciesRoseburia_hominis-0.1561.26e-117.34e-11
speciesButyrivibrio_unclassified-0.1561.3e-117.48e-11
speciesCoprococcus_sp_ART55_1-0.1561.33e-117.56e-11
speciesEubacterium_hallii-0.1542.11e-111.19e-10
speciesSutterella_wadsworthensis-0.1532.91e-111.62e-10
speciesAlistipes_senegalensis-0.1533.09e-111.7e-10
speciesBifidobacterium_pseudocatenulatum0.1523.7e-112.01e-10
speciesBacteroides_thetaiotaomicron0.1514.9e-112.63e-10
speciesLactobacillus_salivarius0.1515.31e-112.82e-10
speciesMegasphaera_unclassified0.156.2e-113.25e-10
speciesStreptococcus_infantarius0.156.92e-113.58e-10
speciesVeillonella_parvula0.156.98e-113.58e-10
speciesBacteroides_stercoris0.1498.42e-114.27e-10
speciesMegasphaera_micronuciformis0.1499.47e-114.76e-10
familyEnterococcaceae0.1481.23e-106.11e-10
genusEnterococcus0.1481.26e-106.2e-10
speciesStreptococcus_thermophilus-0.1481.33e-106.47e-10
speciesClostridium_perfringens0.1471.47e-107.08e-10
genusDorea-0.1471.94e-109.25e-10
genusSutterella-0.1462.03e-109.58e-10
speciesCoprococcus_catus-0.1462.12e-109.91e-10
speciesFusobacterium_varium0.1462.21e-101.02e-09
speciesLactobacillus_mucosae0.1452.73e-101.25e-09
familyLeuconostocaceae0.1443.71e-101.68e-09
speciesLactococcus_garvieae0.1444.12e-101.82e-09
familyBacteroidales_noname-0.1444.21e-101.82e-09
genusBacteroidales_noname-0.1444.21e-101.82e-09
speciesAnaerostipes_hadrus-0.1444.21e-101.82e-09
speciesBacteroidales_bacterium_ph8-0.1444.21e-101.82e-09
speciesAnaerostipes_unclassified0.1426.08e-102.61e-09
speciesWeissella_cibaria0.1427.6e-103.23e-09
genusClostridiales_noname0.141.22e-095.14e-09
classBacilli0.1391.5e-096.27e-09
orderLactobacillales0.1391.55e-096.42e-09
speciesFusobacterium_nucleatum0.1391.71e-097.02e-09
speciesLachnospiraceae_bacterium_2_1_58FAA0.1381.87e-097.61e-09
genusCoprobacter-0.1382e-098e-09
speciesCoprobacter_fastidiosus-0.1382e-098e-09
speciesEnterobacter_aerogenes0.1372.84e-091.13e-08
phylumFirmicutes-0.1373.05e-091.2e-08
familyClostridiales_noname0.1354.42e-091.72e-08
phylumVerrucomicrobia-0.1346.71e-092.49e-08
classVerrucomicrobiae-0.1346.71e-092.49e-08
orderVerrucomicrobiales-0.1346.71e-092.49e-08
familyVerrucomicrobiaceae-0.1346.71e-092.49e-08
genusAkkermansia-0.1346.71e-092.49e-08
speciesAkkermansia_muciniphila-0.1346.71e-092.49e-08
genusBlautia0.1338.83e-093.26e-08
speciesPrevotella_stercorea0.1329.37e-093.43e-08
speciesC2likevirus_unclassified-0.1321.05e-083.81e-08
speciesStreptococcus_anginosus0.1311.24e-084.47e-08
genusVeillonella0.1311.3e-084.65e-08
genusC2likevirus-0.1311.38e-084.9e-08
speciesMitsuokella_unclassified-0.1311.42e-085e-08
speciesBacteroides_nordii0.131.61e-085.63e-08
speciesBacteroides_plebeius0.131.73e-086e-08
speciesBilophila_unclassified0.1292.4e-088.27e-08
genusPrevotella0.1273.24e-081.11e-07
genusBilophila0.1273.43e-081.16e-07
genusSolobacterium0.1274.02e-081.35e-07
speciesSolobacterium_moorei0.1274.02e-081.35e-07
familyPeptostreptococcaceae0.1247.07e-082.35e-07
speciesBacteroides_uniformis-0.1247.24e-082.39e-07
speciesParaprevotella_unclassified-0.1239.32e-083.05e-07
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1239.79e-083.19e-07
genusMitsuokella-0.1231.01e-073.27e-07
speciesBacteroides_pectinophilus-0.1221.36e-074.37e-07
genusParaprevotella-0.1211.68e-075.36e-07
speciesButyrivibrio_crossotus-0.121.91e-076.05e-07
speciesRuminococcus_sp_5_1_39BFAA-0.122.05e-076.45e-07
familyBacteroidaceae0.122.13e-076.61e-07
genusBacteroides0.122.13e-076.61e-07
speciesAlistipes_shahii-0.1192.56e-077.9e-07
speciesParaprevotella_xylaniphila-0.1183.01e-079.23e-07
speciesAlistipes_putredinis-0.1183.11e-079.47e-07
speciesCollinsella_aerofaciens-0.1173.79e-071.15e-06
familyLactobacillaceae0.1173.86e-071.16e-06
speciesEnterococcus_faecium0.1164.66e-071.39e-06
speciesRuminococcus_lactaris-0.1164.86e-071.44e-06
speciesClostridium_clostridioforme0.1155.59e-071.65e-06
genusLactobacillus0.1155.65e-071.66e-06
speciesStreptococcus_salivarius0.1121.29e-063.76e-06
familyMyoviridae0.1111.4e-064.05e-06
speciesStreptococcus_mitis_oralis_pneumoniae0.1111.41e-064.06e-06
speciesEnterococcus_faecalis0.1111.63e-064.66e-06
genusPeptostreptococcaceae_noname0.1092.14e-066.08e-06
classDeltaproteobacteria0.1092.38e-066.65e-06
orderDesulfovibrionales0.1092.38e-066.65e-06
familyDesulfovibrionaceae0.1092.38e-066.65e-06
speciesKlebsiella_sp_MS_92_30.1082.73e-067.58e-06
speciesLachnospiraceae_bacterium_2_1_46FAA0.1082.83e-067.79e-06
speciesParaprevotella_clara-0.1082.84e-067.79e-06
familyRikenellaceae-0.1083.09e-068.38e-06
genusAlistipes-0.1083.09e-068.38e-06
speciesStreptococcus_lutetiensis0.1073.3e-068.9e-06
speciesClostridium_bartlettii0.1073.66e-069.82e-06
speciesMegamonas_rupellensis0.1073.87e-061.03e-05
speciesOdoribacter_splanchnicus-0.1064.26e-061.13e-05
speciesBacteroides_intestinalis0.1064.36e-061.14e-05
genusMorganella0.1064.39e-061.14e-05
speciesMorganella_morganii0.1064.39e-061.14e-05
speciesDorea_formicigenerans-0.1064.44e-061.15e-05
speciesCoprococcus_eutactus-0.1055.9e-061.52e-05
genusCollinsella-0.1046.02e-061.54e-05
familySiphoviridae-0.1046.11e-061.56e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.1046.72e-061.71e-05
speciesBifidobacterium_dentium0.1046.79e-061.71e-05
phylumEuryarchaeota-0.1047.09e-061.78e-05
genusOdoribacter-0.1047.23e-061.81e-05
speciesStreptococcus_pasteurianus0.1037.43e-061.85e-05
speciesAlistipes_sp_HGB5-0.1038.79e-062.17e-05
genusAdlercreutzia-0.1029.17e-062.24e-05
speciesAdlercreutzia_equolifaciens-0.1029.17e-062.24e-05
familyBacillales_noname0.1029.35e-062.26e-05
genusGemella0.1029.35e-062.26e-05
speciesPorphyromonas_uenonis0.1029.65e-062.32e-05
speciesAcidaminococcus_intestini0.1029.83e-062.36e-05
classMethanobacteria-0.1021.05e-052.48e-05
orderMethanobacteriales-0.1021.05e-052.48e-05
familyMethanobacteriaceae-0.1021.05e-052.48e-05
speciesPrevotella_bivia0.1021.07e-052.51e-05
speciesMethanobrevibacter_smithii-0.1011.13e-052.64e-05
speciesPrevotella_buccae0.1011.15e-052.67e-05
speciesCoprobacillus_sp_D60.1011.28e-052.96e-05
genusMethanobrevibacter-0.11.45e-053.34e-05
genusAnaerotruncus-0.0991.66e-053.8e-05
genusFaecalibacterium-0.0982.02e-054.58e-05
speciesFaecalibacterium_prausnitzii-0.0982.02e-054.58e-05
familyVeillonellaceae0.0982.06e-054.65e-05
speciesEubacterium_limosum0.0982.28e-055.12e-05
speciesMegamonas_hypermegale0.0982.34e-055.23e-05
speciesLactobacillus_amylovorus0.0972.51e-055.59e-05
speciesBacteroides_salyersiae0.0972.61e-055.78e-05
familyOscillospiraceae-0.0963.5e-057.68e-05
genusOscillibacter-0.0963.5e-057.68e-05
speciesParabacteroides_goldsteinii0.0953.58e-057.82e-05
speciesOscillibacter_unclassified-0.0954.22e-059.18e-05
classEpsilonproteobacteria0.0944.35e-059.38e-05
orderCampylobacterales0.0944.35e-059.38e-05
speciesBilophila_wadsworthia0.0944.87e-050.000104
speciesVeillonella_dispar0.0935.37e-050.000115
genusPeptostreptococcus0.0935.65e-050.00012
speciesAlistipes_onderdonkii-0.0935.93e-050.000125
familyCampylobacteraceae0.0935.95e-050.000125
speciesStreptococcus_australis0.0936.15e-050.000129
genusCampylobacter0.0926.24e-050.00013
speciesVeillonella_unclassified0.0926.59e-050.000137
speciesBacteroides_xylanisolvens0.0926.83e-050.000141
familyClostridiales_Family_XI_Incertae_Sedis0.0927.14e-050.000147
genusPeptoniphilus0.0927.34e-050.000151
speciesRoseburia_intestinalis-0.0927.41e-050.000151
speciesErysipelotrichaceae_bacterium_2_2_44A0.0917.68e-050.000156
genusPorphyromonas0.099.2e-050.000186
speciesEggerthella_lenta0.099.46e-050.000191
speciesEubacterium_biforme-0.0890.0001160.000233
familyStreptococcaceae0.0890.000120.00024
speciesParabacteroides_merdae-0.0890.0001220.000243
speciesPrevotella_copri0.0890.0001240.000246
speciesAnaerotruncus_colihominis0.0860.0001940.000383
speciesHaemophilus_parainfluenzae0.0860.0001960.000385
orderPasteurellales0.0850.0002280.000445
familyPasteurellaceae0.0850.0002280.000445
genusStreptococcus0.0850.0002290.000445
speciesAcidaminococcus_fermentans0.0850.0002460.000476
genusHaemophilus0.0850.0002520.000485
speciesRuminococcus_champanellensis-0.0840.0002550.000489
genusProteus0.0840.0002580.000493
speciesLeuconostoc_lactis0.0840.0002670.000508
speciesGemella_morbillorum0.0840.0002720.000516
speciesClostridium_asparagiforme0.0840.0002820.000532
speciesProteus_mirabilis0.0840.0002930.000551
speciesCoprobacillus_sp_29_10.0830.0003020.000566
orderBacillales0.0830.0003520.000657
familyLachnospiraceae-0.0820.0003770.000701
genusRuminococcus-0.0810.000430.000796
speciesMegasphaera_elsdenii0.080.0005210.000961
familyPropionibacteriaceae-0.080.000570.00105
speciesLactobacillus_oris0.0790.0006430.00118
speciesLactobacillus_sanfranciscensis0.0780.000740.00135
speciesLachnospiraceae_bacterium_1_4_56FAA0.0780.0007660.00139
speciesParabacteroides_johnsonii0.0770.000820.00148
speciesBacteroides_oleiciplenus0.0770.000830.0015
speciesLactobacillus_plantarum0.0760.0009770.00175
speciesLactobacillus_crispatus0.0760.001010.00181
speciesClostridium_sp_ATCC_BAA_4420.0760.001030.00183
speciesLactococcus_phage_P680-0.0760.001050.00186
speciesBacteroides_coprocola0.0760.001050.00186
speciesRuminococcus_obeum-0.0750.001250.0022
speciesVeillonella_atypica0.0740.001280.00225
speciesEnterobacteria_phage_HK5440.0740.00140.00245
speciesPeptostreptococcus_stomatis0.0730.001490.0026
speciesEubacterium_ventriosum-0.0730.001650.00286
speciesClostridium_sp_L2_50-0.0720.001860.00322
speciesEubacterium_dolichum0.0710.002070.00357
speciesAggregatibacter_segnis0.0710.002240.00384
speciesBacteroides_sp_3_1_190.0710.002260.00386
speciesPropionibacterium_freudenreichii-0.070.002330.00397
speciesCollinsella_tanakaei0.0690.002690.00457
speciesLactobacillus_vaginalis0.0690.002790.00472
genusAcidaminococcus0.0680.003190.00538
speciesBacteroides_finegoldii0.0680.003250.00546
genusAnaerostipes-0.0680.003490.00584
speciesBlautia_producta0.0670.00370.00617
speciesBifidobacterium_catenulatum-0.0660.004040.00671
speciesCampylobacter_concisus0.0640.005280.00874
speciesMethanobrevibacter_unclassified-0.0640.005430.00896
speciesLactococcus_phage_jm2-0.0640.005850.00962
genusClostridiaceae_noname0.0640.005940.0097
speciesClostridiaceae_bacterium_JC1180.0640.005940.0097
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0640.0060.00975
speciesBifidobacterium_angulatum-0.0630.006020.00975
speciesLactobacillus_gasseri0.0630.006030.00975
genusCatenibacterium-0.0630.006140.00986
speciesCatenibacterium_mitsuokai-0.0630.006140.00986
speciesParabacteroides_sp_D13-0.0630.006310.0101
speciesLachnospiraceae_bacterium_1_1_57FAA0.0630.006350.0101
speciesOdoribacter_unclassified-0.0630.006540.0104
speciesAlistipes_finegoldii-0.0630.006550.0104
genusPropionibacterium-0.0630.006580.0104
familySutterellaceae-0.0630.006640.0104
speciesBifidobacterium_breve0.0620.006910.0108
classNegativicutes0.0620.007410.0115
orderSelenomonadales0.0620.007410.0115
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0610.008020.0124
speciesBacteroides_ovatus0.0610.008040.0124
speciesMegamonas_funiformis0.0610.008410.013
speciesParabacteroides_unclassified0.060.009950.0153
speciesPorphyromonas_asaccharolytica0.0590.01110.017
speciesLactococcus_phage_phi7-0.0590.01120.0171
familyPorphyromonadaceae-0.0580.01140.0174
speciesBifidobacterium_animalis-0.0580.01160.0176
genusSiphoviridae_noname-0.0580.01180.0179
speciesAlistipes_indistinctus-0.0580.01210.0182
genusPhascolarctobacterium-0.0580.01250.0187
speciesPhascolarctobacterium_succinatutens-0.0580.01250.0187
speciesEubacterium_eligens-0.0580.01250.0187
phylumViruses_noname-0.0570.01290.0191
classViruses_noname-0.0570.01290.0191
speciesOscillibacter_sp_KLE_1745-0.0580.01290.0191
speciesDesulfovibrio_piger-0.0570.0130.0192
speciesBlautia_hydrogenotrophica-0.0570.01370.0201
familyPodoviridae0.0570.01450.0213
genusRoseburia-0.0560.01460.0213
speciesBacteroides_salanitronis-0.0560.01490.0217
genusAggregatibacter0.0560.0150.0218
speciesLactobacillus_fermentum0.0550.01660.024
speciesTuricibacter_unclassified-0.0550.01720.0248
speciesErysipelotrichaceae_bacterium_3_1_530.0540.01920.0276
speciesErysipelotrichaceae_bacterium_21_3-0.0540.020.0287
speciesBacteroides_massiliensis0.0530.02230.0319
orderCaudovirales-0.0520.02420.0345
speciesEubacterium_cylindroides-0.0510.0260.037
speciesRoseburia_unclassified-0.0510.02640.0374
genusBurkholderiales_noname0.0510.02660.0375
speciesBurkholderiales_bacterium_1_1_470.0510.02660.0375
speciesStreptococcus_gordonii0.0510.02890.0406
genusParvimonas0.050.03080.0431
speciesParvimonas_unclassified0.050.03090.0432
genusTuricibacter-0.050.03140.0437
familyBurkholderiales_noname0.0490.03340.0464
speciesOlsenella_unclassified-0.0480.03780.0523
speciesOdoribacter_laneus0.0480.03840.053
speciesBacteroides_caccae0.0480.0390.0537
orderCoriobacteriales-0.0470.04130.0565
familyCoriobacteriaceae-0.0470.04130.0565
genusLambdalikevirus0.0470.04220.0576
speciesSubdoligranulum_sp_4_3_54A2FAA0.0470.04260.0579
classErysipelotrichia0.0460.04630.0624
orderErysipelotrichales0.0460.04630.0624
familyErysipelotrichaceae0.0460.04630.0624
speciesPeptostreptococcus_anaerobius0.0460.04730.0636
genusMyoviridae_noname0.0450.050.067
speciesEggerthella_sp_1_3_56FAA-0.0450.05130.0685
orderBurkholderiales-0.0450.05140.0685
genusDialister-0.0450.05220.0694
speciesLactococcus_lactis-0.0440.05870.0775
speciesBacteroides_clarus0.0440.05870.0775
speciesLactobacillus_rhamnosus-0.0440.05880.0775
familyActinomycetaceae0.0430.06180.0813
speciesStreptococcus_vestibularis0.0430.06210.0814
speciesParabacteroides_distasonis0.0420.06620.0866
genusAcidaminococcaceae_unclassified-0.0420.06870.0896
genusLeuconostoc0.0420.07090.0922
speciesLactobacillus_acidophilus-0.0420.07170.093
speciesDorea_unclassified-0.0410.0790.102
speciesTuricibacter_sanguinis-0.040.08390.108
genusOlsenella-0.040.08670.112
genusParasutterella0.0390.08840.113
speciesParasutterella_excrementihominis0.0390.08840.113
speciesAlistipes_sp_AP11-0.0390.08880.113
classBetaproteobacteria-0.0380.09810.125
speciesStreptococcus_parasanguinis-0.0370.1050.133
genusActinomyces0.0370.1090.138
speciesDialister_invisus-0.0360.1150.145
speciesOscillibacter_sp_KLE_1728-0.0360.1180.149
orderAeromonadales0.0360.1210.152
speciesBacteroides_barnesiae-0.0350.1280.16
speciesRoseburia_inulinivorans-0.0340.1390.174
phylumBacteroidetes0.0340.1440.178
classBacteroidia0.0340.1440.178
orderBacteroidales0.0340.1440.178
orderViruses_noname-0.0340.1470.182
speciesBacteroides_eggerthii0.0330.1530.189
speciesRuminococcus_bromii-0.0330.1550.191
speciesStreptococcus_mutans0.0330.1570.192
speciesErysipelotrichaceae_bacterium_6_1_450.0320.1630.199
speciesLactococcus_phage_bIL67-0.0320.1730.211
familyMicrococcaceae0.0310.1760.214
speciesHaemophilus_paraphrohaemolyticus0.0310.1780.216
speciesBacteroides_sp_1_1_6-0.0310.1810.219
genusRothia0.0310.1830.221
speciesBacteroides_sp_2_1_22-0.0310.1850.223
genusTunalikevirus0.030.1880.226
genusActinobacillus0.030.2010.24
speciesActinobacillus_unclassified0.030.2010.24
speciesRothia_mucilaginosa0.030.2010.24
speciesBifidobacterium_bifidum0.0290.2110.251
speciesSutterella_parvirubra0.0290.2120.251
genusGordonibacter-0.0280.2210.261
speciesGordonibacter_pamelaeae-0.0280.2210.261
genusLachnospiraceae_noname0.0280.2270.267
speciesRuminococcus_torques0.0280.2310.271
speciesLactococcus_phage_936_sensu_lato-0.0270.2380.279
speciesBacteroides_faecis0.0270.2440.285
speciesStreptococcus_sanguinis0.0270.250.291
speciesBacteroides_vulgatus0.0260.2540.295
familyAcidaminococcaceae-0.0260.270.312
speciesBacteroides_dorei-0.0260.270.312
genusSlackia0.0250.2870.331
genusMethanosphaera-0.0240.2980.342
speciesMethanosphaera_stadtmanae-0.0240.2980.342
speciesPeptostreptococcaceae_noname_unclassified-0.0230.3190.365
speciesBacteroides_coprophilus0.0230.3250.371
orderActinomycetales0.0220.3440.391
speciesClostridium_spiroforme-0.0220.3440.391
speciesKlebsiella_phage_KP360.0220.3450.391
genusOxalobacter-0.0210.3640.411
speciesOxalobacter_formigenes-0.0210.3640.411
genusButyricicoccus0.020.3880.436
speciesButyricicoccus_pullicaecorum0.020.3880.436
genusCoriobacteriaceae_noname0.020.3920.439
familyOxalobacteraceae-0.020.3980.445
genusStaphylococcus-0.0190.4190.468
genusSutterellaceae_unclassified-0.0190.4230.471
orderPseudomonadales0.0180.4460.495
speciesBacteroides_sp_4_3_47FAA0.0180.4470.495
speciesAcidaminococcus_unclassified-0.0170.4520.5
speciesAlistipes_unclassified-0.0170.4560.503
speciesLactobacillus_delbrueckii-0.0170.4630.509
familyPrevotellaceae0.0160.4990.548
speciesCoriobacteriaceae_bacterium_phI0.0150.5060.554
speciesCollinsella_intestinalis0.0150.5090.556
speciesLactobacillus_ruminis-0.0140.5420.591
speciesHoldemania_unclassified-0.0140.5560.605
speciesBifidobacterium_longum-0.0130.5670.615
speciesBacteroides_fluxus0.0130.5890.636
speciesHaemophilus_sputorum0.0120.5890.636
genusBifidobacterium-0.0120.6110.658
speciesCollinsella_unclassified-0.0110.6280.675
speciesRuminococcus_sp_JC3040.0110.6330.679
speciesHoldemania_filiformis-0.010.6570.703
genusHoldemania0.010.6650.71
speciesClostridium_sp_KLE_1755-0.010.6710.715
familyStaphylococcaceae-0.0090.6840.727
familySuccinivibrionaceae-0.0090.6890.731
speciesRuminococcus_callidus0.0090.7040.745
speciesHoldemania_sp_AP20.0090.7090.749
genusButyricimonas0.0080.7280.765
speciesButyricimonas_synergistica0.0080.7280.765
orderBifidobacteriales-0.0080.7360.77
familyBifidobacteriaceae-0.0080.7360.77
genusDesulfovibrio-0.0070.7490.781
speciesLactobacillus_casei_paracasei-0.0070.750.781
familyViruses_noname-0.0060.7950.82
genusViruses_noname-0.0060.7950.82
speciesParabacteroides_sp_20_3-0.0060.7950.82
phylumActinobacteria-0.0060.7960.82
classActinobacteria-0.0060.7960.82
genusSuccinatimonas-0.0050.8390.861
speciesSuccinatimonas_hippei-0.0050.8390.861
speciesEubacterium_sp_3_1_31-0.0040.8530.873
speciesSlackia_piriformis-0.0030.8930.912
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0030.9060.924
speciesStreptococcus_phage_Sfi210.0020.9220.938
genusParabacteroides-0.0020.9250.939
speciesBacteroides_cellulosilyticus-0.0020.9320.944
speciesDialister_succinatiphilus-0.0020.9390.949
speciesLactobacillus_reuteri0.0020.9460.954
genusLactococcus-0.0010.9490.955
genusErysipelotrichaceae_noname0.0010.9720.976
speciesMitsuokella_multacida0.0010.9790.981
speciesDesulfovibrio_desulfuricans0.0010.9820.982
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.004778477162990.001284550262261.27880451522e-0710263.36316
Crohns diseaseSpain17660.0149919094780.007490601492580.000518745394297339011.2718
Type II diabetesChina1831850.02225729071010.009474430189810.0026762092428923347.71341
Liver cirrhosisChina1201140.02294233686580.004184180316010.1096057985311700357.1165
Rheumatoid arthritisChina127980.008011486883930.004755114541020.172964936949789026.3114
ObesityDenmark1691230.001825742735410.0004959448585560.191214174771069335.1616
Type II diabetesSweden53920.002618302643310.003767698748320.5418306616961717358.1544
Colorectal cancerAustria64350.02705427435660.01055960729690.8699389141852647789.5825
Ulcerative colitisSpain78660.001623982280460.007490601492580.9584324668412946697.2026
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382