MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-05 07:59:33 PST
Job id & description: 2074, traD_nrg
Query type: dna
Count queries & homologs: 1, 2
Min % identity & max e-value: 70%, 1e-5
Min % query & target coverage: 90%, 90%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
traD359094CompleteK03205COG3505ProteobacteriaEscherichia100.0100.099.95
traD357726CompleteK03205COG3505ProteobacteriaEscherichia99.3100.093.32
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEscherichia_coli0.551.52e-1487.17e-146
genusEscherichia0.5377.04e-1401.66e-137
orderEnterobacteriales0.4862.5e-1112.95e-109
familyEnterobacteriaceae0.4862.5e-1112.95e-109
classGammaproteobacteria0.454.59e-944.33e-92
phylumProteobacteria0.3611.07e-588.42e-57
speciesEscherichia_unclassified0.2669.12e-326.15e-30
genusCoprobacillus0.262.68e-301.58e-28
speciesClostridium_hathewayi0.2594.97e-302.61e-28
speciesClostridium_bolteae0.2531.37e-286.47e-27
speciesRuminococcus_gnavus0.245.7e-262.45e-24
speciesCoprobacillus_unclassified0.2381.54e-256.06e-24
speciesClostridium_nexile0.2181.8e-216.54e-20
speciesClostridiales_bacterium_1_7_47FAA0.2154.86e-211.64e-19
speciesClostridium_symbiosum0.2146.96e-212.19e-19
genusPantoea0.2148.75e-212.43e-19
speciesPantoea_unclassified0.2148.75e-212.43e-19
speciesClostridium_ramosum0.2053.36e-198.81e-18
speciesBacteroides_fragilis0.2038.09e-192.01e-17
familyClostridiaceae0.22.24e-185.29e-17
genusFlavonifractor0.1985.15e-181.1e-16
speciesFlavonifractor_plautii0.1985.15e-181.1e-16
genusClostridium0.1978.25e-181.69e-16
genusKlebsiella0.1961.35e-172.66e-16
genusCitrobacter0.1934.01e-177.57e-16
familyFusobacteriaceae0.1873.11e-165.65e-15
genusFusobacterium0.1841.21e-152.12e-14
phylumFusobacteria0.183.78e-155.95e-14
classFusobacteriia0.183.78e-155.95e-14
orderFusobacteriales0.183.78e-155.95e-14
speciesClostridium_citroniae0.1797.01e-151.07e-13
speciesCitrobacter_freundii0.1771.11e-141.64e-13
speciesEggerthella_unclassified0.1771.49e-142.13e-13
speciesKlebsiella_pneumoniae0.1752.9e-144.03e-13
speciesCitrobacter_unclassified0.1718.84e-141.19e-12
genusEggerthella0.1691.67e-132.19e-12
speciesClostridium_clostridioforme0.1664.76e-136.07e-12
speciesLachnospiraceae_bacterium_6_1_63FAA0.1656.9e-138.57e-12
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1621.71e-122.07e-11
speciesEnterobacter_cloacae0.1621.92e-122.27e-11
speciesEubacterium_siraeum-0.1578.7e-121e-10
genusEnterobacter0.1579.49e-121.07e-10
speciesFusobacterium_ulcerans0.1532.89e-113.17e-10
genusClostridiales_noname0.1523.98e-114.27e-10
speciesAnaerostipes_unclassified0.1515.17e-115.42e-10
genusMegasphaera0.1498.87e-119.1e-10
genusCoprococcus-0.1499.62e-119.66e-10
familyClostridiales_noname0.1481.37e-101.35e-09
genusEubacterium-0.1443.63e-103.5e-09
familyEubacteriaceae-0.1443.75e-103.54e-09
speciesSubdoligranulum_unclassified-0.1444.25e-103.93e-09
genusEnterococcus0.1434.63e-104.2e-09
familyEnterococcaceae0.1435.39e-104.8e-09
genusSubdoligranulum-0.1345.46e-094.77e-08
speciesEubacterium_ramulus-0.1311.18e-081.01e-07
speciesEubacterium_rectale-0.1311.42e-081.2e-07
genusBlautia0.1292.45e-082.03e-07
speciesFusobacterium_varium0.1273.88e-083.16e-07
speciesCoprococcus_sp_ART55_1-0.1247.02e-085.62e-07
speciesKlebsiella_unclassified0.1247.68e-086.04e-07
speciesErysipelotrichaceae_bacterium_2_2_44A0.1248.18e-086.33e-07
familyRuminococcaceae-0.1238.59e-086.54e-07
speciesLactobacillus_salivarius0.1239.62e-087.21e-07
speciesAcidaminococcus_intestini0.1221.08e-077.97e-07
speciesLachnospiraceae_bacterium_2_1_58FAA0.1211.68e-071.22e-06
speciesBlautia_producta0.1192.45e-071.75e-06
genusButyrivibrio-0.1164.44e-073.13e-06
speciesMegasphaera_unclassified0.1148.13e-075.64e-06
speciesRoseburia_hominis-0.1148.42e-075.76e-06
speciesAlistipes_senegalensis-0.1138.87e-075.98e-06
speciesKlebsiella_oxytoca0.1139.38e-076.24e-06
genusFaecalibacterium-0.1139.95e-076.43e-06
speciesFaecalibacterium_prausnitzii-0.1139.95e-076.43e-06
speciesEnterococcus_faecalis0.1121.08e-066.89e-06
speciesEubacterium_hallii-0.1121.17e-067.23e-06
classClostridia-0.1121.18e-067.23e-06
orderClostridiales-0.1121.18e-067.23e-06
familyBacteroidaceae0.1121.29e-067.71e-06
genusBacteroides0.1121.29e-067.71e-06
speciesLactococcus_garvieae0.1111.66e-069.79e-06
speciesEubacterium_limosum0.111.73e-061.01e-05
genusSutterella-0.111.77e-061.02e-05
speciesFusobacterium_nucleatum0.111.93e-061.1e-05
speciesDorea_longicatena-0.1092.29e-061.29e-05
familyBacteroidales_noname-0.1092.4e-061.3e-05
genusBacteroidales_noname-0.1092.4e-061.3e-05
speciesBacteroidales_bacterium_ph8-0.1092.4e-061.3e-05
speciesSutterella_wadsworthensis-0.1092.51e-061.35e-05
speciesPrevotella_bivia0.1082.57e-061.36e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.1082.98e-061.56e-05
speciesMegasphaera_micronuciformis0.1073.22e-061.67e-05
speciesBacteroides_thetaiotaomicron0.1073.44e-061.76e-05
speciesEnterococcus_faecium0.1064.33e-062.19e-05
speciesCoprococcus_comes-0.1064.36e-062.19e-05
phylumSynergistetes0.1064.82e-062.32e-05
classSynergistia0.1064.82e-062.32e-05
orderSynergistales0.1064.82e-062.32e-05
familySynergistaceae0.1064.82e-062.32e-05
speciesCoprococcus_catus-0.1047.1e-063.39e-05
phylumFirmicutes-0.1038.18e-063.86e-05
speciesBacteroides_nordii0.1038.78e-064.1e-05
genusPyramidobacter0.1028.97e-064.11e-05
speciesPyramidobacter_piscolens0.1028.97e-064.11e-05
speciesAlistipes_shahii-0.1029.96e-064.52e-05
speciesEubacterium_dolichum0.1021.02e-054.59e-05
genusPeptoniphilus0.1021.08e-054.81e-05
genusMorganella0.1011.24e-055.37e-05
speciesMorganella_morganii0.1011.24e-055.37e-05
speciesStreptococcus_infantarius0.1011.24e-055.37e-05
speciesAnaerotruncus_unclassified-0.11.44e-056.18e-05
speciesBifidobacterium_adolescentis-0.0991.77e-057.53e-05
speciesLachnospiraceae_bacterium_1_4_56FAA0.0991.82e-057.67e-05
speciesBacteroides_pectinophilus-0.0991.9e-057.94e-05
genusWeissella0.0991.96e-058.12e-05
speciesClostridium_perfringens0.0972.45e-050.000101
speciesBifidobacterium_pseudocatenulatum0.0972.62e-050.000107
speciesStreptococcus_lutetiensis0.0972.74e-050.000111
genusBilophila0.0963.11e-050.000124
speciesStreptococcus_thermophilus-0.0963.39e-050.000134
speciesCoprobacillus_sp_29_10.0963.4e-050.000134
speciesBilophila_unclassified0.0963.48e-050.000136
speciesWeissella_confusa0.0953.59e-050.000139
speciesClostridium_asparagiforme0.0953.7e-050.000142
genusCoprobacter-0.0953.8e-050.000142
speciesAnaerotruncus_colihominis0.0953.8e-050.000142
speciesCoprobacter_fastidiosus-0.0953.8e-050.000142
genusProteus0.0944.32e-050.000161
speciesCollinsella_aerofaciens-0.0944.88e-050.00018
genusPeptostreptococcus0.0944.98e-050.00018
genusSolobacterium0.0945.02e-050.00018
speciesSolobacterium_moorei0.0945.02e-050.00018
genusBarnesiella-0.0945.07e-050.00018
speciesBarnesiella_intestinihominis-0.0945.07e-050.00018
speciesBacteroides_stercoris0.0935.52e-050.000194
speciesBifidobacterium_dentium0.0935.67e-050.000198
genusClostridiaceae_noname0.0936.1e-050.00021
speciesClostridiaceae_bacterium_JC1180.0936.1e-050.00021
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0926.3e-050.000215
genusDorea-0.0926.75e-050.000229
speciesRoseburia_intestinalis-0.0918.31e-050.00028
speciesAnaerostipes_hadrus-0.0918.44e-050.000283
familyLeuconostocaceae0.099.65e-050.000321
speciesAcidaminococcus_fermentans0.090.0001060.00035
speciesLactobacillus_mucosae0.0880.0001270.000416
speciesEggerthella_lenta0.0880.0001310.000426
genusCollinsella-0.0880.000140.000453
familyLactobacillaceae0.0880.0001470.000472
speciesBilophila_wadsworthia0.0880.0001490.000475
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0870.0001670.000522
classDeltaproteobacteria0.0870.0001680.000522
orderDesulfovibrionales0.0870.0001680.000522
familyDesulfovibrionaceae0.0870.0001680.000522
genusMethanobrevibacter-0.0860.0001810.000555
speciesEubacterium_biforme-0.0860.0001810.000555
classMethanobacteria-0.0850.0002270.000682
orderMethanobacteriales-0.0850.0002270.000682
familyMethanobacteriaceae-0.0850.0002270.000682
speciesMethanobrevibacter_smithii-0.0850.0002420.000723
phylumEuryarchaeota-0.0850.0002470.000733
speciesProteus_mirabilis0.0840.0002560.000755
orderLactobacillales0.0840.000260.000758
speciesCoprococcus_eutactus-0.0840.000260.000758
genusLactobacillus0.0840.0002770.0008
classBacilli0.0840.0002780.0008
speciesParaprevotella_unclassified-0.0840.0002940.000839
speciesDorea_formicigenerans-0.0840.0002950.000839
speciesButyrivibrio_crossotus-0.0830.0003180.000899
speciesPorphyromonas_uenonis0.0820.0003710.00104
genusParaprevotella-0.0820.0003780.00106
speciesAlistipes_sp_HGB5-0.0820.0003910.00109
speciesParabacteroides_unclassified0.0810.0004550.00126
speciesGemella_morbillorum0.0810.0004720.0013
speciesLachnospiraceae_bacterium_2_1_46FAA0.0810.0004840.00132
familyClostridiales_Family_XI_Incertae_Sedis0.0810.0004870.00132
speciesClostridium_sp_ATCC_BAA_4420.080.0004970.00134
speciesParabacteroides_merdae-0.080.0005350.00143
speciesEubacterium_eligens-0.080.000540.00144
speciesAlistipes_putredinis-0.080.0005540.00147
familyPeptostreptococcaceae0.0790.0005840.00154
genusAcidaminococcus0.0790.0005860.00154
speciesRuminococcus_sp_5_1_39BFAA-0.0790.00060.00156
genusPorphyromonas0.0790.0006280.00163
speciesPeptostreptococcus_anaerobius0.0790.0006520.00168
speciesLactobacillus_amylovorus0.0780.0006810.00175
speciesEnterobacteria_phage_HK5440.0780.0007270.00185
familySiphoviridae-0.0780.0007330.00186
speciesRuminococcus_lactaris-0.0770.0009220.00233
speciesEubacterium_ventriosum-0.0760.0009530.00239
speciesVeillonella_parvula0.0760.0009860.00246
genusC2likevirus-0.0760.001020.00252
speciesC2likevirus_unclassified-0.0760.001020.00252
speciesFusobacterium_mortiferum0.0750.00120.00295
genusPseudoflavonifractor-0.0740.001270.00309
speciesPseudoflavonifractor_capillosus-0.0740.001270.00309
speciesSubdoligranulum_sp_4_3_54A2FAA0.0740.00130.00315
speciesParaprevotella_xylaniphila-0.0740.001330.0032
speciesStreptococcus_pasteurianus0.0740.001340.00321
speciesClostridium_bartlettii0.0740.00140.00334
speciesEnterobacter_aerogenes0.0740.001450.00344
speciesCoprobacillus_sp_D60.0730.001550.00366
speciesPrevotella_buccae0.0720.001750.00411
genusPeptostreptococcaceae_noname0.070.002320.00542
speciesBifidobacterium_breve0.070.002330.00542
speciesRuminococcus_obeum-0.070.00240.00555
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.070.002450.00564
speciesBacteroides_uniformis-0.070.00260.00596
familyRikenellaceae-0.0690.002670.00606
genusAlistipes-0.0690.002670.00606
speciesButyrivibrio_unclassified-0.0690.002720.00614
speciesParaprevotella_clara-0.0680.003210.00704
phylumVerrucomicrobia-0.0680.003220.00704
classVerrucomicrobiae-0.0680.003220.00704
orderVerrucomicrobiales-0.0680.003220.00704
familyVerrucomicrobiaceae-0.0680.003220.00704
genusAkkermansia-0.0680.003220.00704
speciesAkkermansia_muciniphila-0.0680.003220.00704
speciesLactobacillus_crispatus0.0680.003390.00737
speciesBifidobacterium_angulatum-0.0660.004020.0087
speciesBifidobacterium_catenulatum-0.0660.004210.00907
speciesBacteroides_sp_3_1_190.0660.004290.0092
genusAdlercreutzia-0.0650.004830.0103
speciesAdlercreutzia_equolifaciens-0.0650.004830.0103
speciesPrevotella_stercorea0.0650.00490.0104
speciesMegamonas_unclassified0.0650.004940.0104
genusMegamonas0.0650.005030.0106
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0650.005140.0107
familyBacillales_noname0.0640.005290.011
genusGemella0.0640.005290.011
speciesLactococcus_phage_phi7-0.0640.005490.0113
genusRuminococcus-0.0640.005720.0117
genusCatenibacterium-0.0640.005860.0119
speciesCatenibacterium_mitsuokai-0.0640.005860.0119
speciesKlebsiella_phage_KP36-0.0640.005980.0121
genusRuminococcaceae_noname-0.0630.006370.0128
speciesRuminococcaceae_bacterium_D16-0.0630.006370.0128
speciesClostridium_sp_L2_50-0.0630.006440.0129
speciesKlebsiella_sp_MS_92_30.0620.007260.0145
speciesMegasphaera_elsdenii0.0610.008120.0161
speciesAlistipes_finegoldii-0.060.008910.0176
speciesErysipelotrichaceae_bacterium_6_1_450.060.009060.0178
speciesRuminococcus_champanellensis-0.060.009080.0178
speciesMethanobrevibacter_unclassified-0.060.00920.0179
genusPhascolarctobacterium-0.0590.01050.0203
speciesPhascolarctobacterium_succinatutens-0.0590.01050.0203
speciesLactobacillus_vaginalis0.0590.01090.021
genusPrevotella0.0580.01140.0219
speciesPeptostreptococcus_stomatis0.0580.01280.0244
speciesClostridium_leptum-0.0580.01280.0244
familyVeillonellaceae0.0570.0130.0246
speciesLactobacillus_oris0.0570.01310.0247
speciesStreptococcus_parasanguinis-0.0570.01420.0267
speciesParabacteroides_johnsonii0.0570.01440.0269
familySutterellaceae-0.0570.01450.0269
genusRoseburia-0.0570.01450.0269
familyMyoviridae0.0560.01570.0291
classErysipelotrichia0.0560.01610.0295
orderErysipelotrichales0.0560.01610.0295
familyErysipelotrichaceae0.0560.01610.0295
speciesErysipelotrichaceae_bacterium_3_1_530.0550.01640.0298
speciesPorphyromonas_asaccharolytica0.0550.01640.0298
speciesLachnospiraceae_bacterium_1_1_57FAA0.0550.0170.0307
speciesBacteroides_oleiciplenus0.0550.01740.0313
genusOdoribacter-0.0550.01790.0321
orderCaudovirales-0.0550.0180.0322
speciesLeuconostoc_lactis0.0540.01930.0344
speciesLactobacillus_rhamnosus-0.0540.01940.0344
familyActinomycetaceae0.0540.02020.0357
genusVeillonella0.0540.02030.0358
speciesMitsuokella_unclassified-0.0530.02160.0379
familyCampylobacteraceae0.0530.02240.0392
genusCampylobacter0.0530.02270.0395
genusLachnospiraceae_noname0.0530.02290.0397
speciesStreptococcus_anginosus0.0520.02420.0418
genusTunalikevirus-0.0520.02570.0443
classEpsilonproteobacteria0.0510.02660.0453
orderCampylobacterales0.0510.02660.0453
speciesRuminococcus_torques0.0510.02660.0453
genusSutterellaceae_unclassified-0.0510.02770.047
speciesStreptococcus_mitis_oralis_pneumoniae0.050.0290.0491
genusActinomyces0.050.03040.051
speciesStreptococcus_australis0.050.03050.051
speciesBacteroides_plebeius0.050.03050.051
phylumViruses_noname-0.050.03170.0527
classViruses_noname-0.050.03170.0527
familyPropionibacteriaceae-0.050.0320.0528
speciesOdoribacter_splanchnicus-0.050.0320.0528
speciesBacteroides_xylanisolvens0.050.03220.053
speciesTuricibacter_unclassified-0.0490.03490.0572
speciesBacteroides_intestinalis0.0480.03630.0593
speciesOdoribacter_unclassified-0.0480.03730.0607
genusHoldemania0.0480.03760.061
speciesLactococcus_lactis-0.0480.03830.0619
speciesLactococcus_phage_jm2-0.0480.03890.0627
speciesLactococcus_phage_P680-0.0480.03910.0628
genusParvimonas0.0470.04070.0651
speciesParvimonas_unclassified0.0470.04080.0651
speciesMegamonas_rupellensis0.0470.04330.0688
genusButyricicoccus0.0470.0440.0695
speciesButyricicoccus_pullicaecorum0.0470.0440.0695
familyLachnospiraceae-0.0460.04550.0716
speciesRoseburia_inulinivorans-0.0460.04680.0734
speciesWeissella_cibaria0.0460.04730.0739
speciesRuminococcus_bromii-0.0460.04810.0749
genusMitsuokella-0.0450.05080.0789
orderBacillales0.0450.0510.0789
orderAeromonadales0.0450.05210.0801
speciesAlistipes_onderdonkii-0.0450.05210.0801
speciesParabacteroides_goldsteinii0.0440.05650.0866
genusTuricibacter-0.0440.05840.0889
speciesPropionibacterium_freudenreichii-0.0440.05840.0889
speciesParabacteroides_sp_D13-0.0440.0590.0895
speciesLactobacillus_sanfranciscensis0.0440.05920.0896
speciesErysipelotrichaceae_bacterium_21_30.0430.06170.093
genusPropionibacterium-0.0420.06990.105
genusStaphylococcus-0.040.08330.125
orderPseudomonadales0.040.08430.126
speciesBifidobacterium_animalis-0.040.08650.129
speciesStreptococcus_salivarius0.0390.09220.137
speciesDesulfovibrio_piger-0.0390.0960.142
speciesBacteroides_sp_2_1_22-0.0380.1020.15
genusBurkholderiales_noname0.0380.1050.153
speciesMegamonas_hypermegale0.0380.1050.153
speciesBurkholderiales_bacterium_1_1_470.0380.1050.153
familyStreptococcaceae0.0370.1080.157
speciesLactobacillus_gasseri0.0370.1080.157
speciesBacteroides_salanitronis-0.0370.110.159
familyBurkholderiales_noname0.0370.1110.16
speciesCampylobacter_concisus0.0360.1240.178
speciesHoldemania_filiformis0.0350.1260.181
speciesLactobacillus_fermentum0.0350.1330.19
speciesLactobacillus_acidophilus-0.0350.1340.191
speciesBacteroides_vulgatus0.0350.1360.193
genusStreptococcus0.0340.140.198
speciesBacteroides_clarus0.0340.1470.208
genusParasutterella0.0330.1490.209
speciesParasutterella_excrementihominis0.0330.1490.209
speciesLactobacillus_ruminis-0.0330.1510.211
familyStaphylococcaceae-0.0330.1540.215
genusCoriobacteriaceae_noname0.0310.1840.256
speciesOdoribacter_laneus0.030.1890.262
speciesLachnospiraceae_bacterium_5_1_63FAA-0.030.20.277
speciesBacteroides_coprocola0.030.2020.279
speciesBacteroides_sp_4_3_47FAA0.0290.2170.299
speciesLactobacillus_plantarum0.0280.2190.3
speciesBacteroides_salyersiae0.0280.2230.305
orderBurkholderiales-0.0280.2260.308
speciesPrevotella_copri0.0280.2280.31
speciesTuricibacter_sanguinis-0.0280.2330.316
phylumBacteroidetes0.0270.2390.321
classBacteroidia0.0270.2390.321
orderBacteroidales0.0270.2390.321
classBetaproteobacteria-0.0270.2410.323
speciesOscillibacter_unclassified-0.0270.2420.324
speciesCollinsella_intestinalis0.0270.2450.327
speciesVeillonella_dispar0.0270.250.331
genusMethanosphaera-0.0270.2510.331
speciesMethanosphaera_stadtmanae-0.0270.2510.331
speciesBacteroides_caccae0.0270.2510.331
familyOscillospiraceae-0.0260.2640.345
genusOscillibacter-0.0260.2640.345
speciesOscillibacter_sp_KLE_1728-0.0260.2640.345
speciesCoriobacteriaceae_bacterium_phI0.0260.2660.347
genusLeuconostoc0.0260.2670.347
speciesPeptostreptococcaceae_noname_unclassified-0.0250.2780.36
genusErysipelotrichaceae_noname0.0250.2880.372
genusAnaerotruncus-0.0240.2950.38
classNegativicutes0.0240.2980.382
orderSelenomonadales0.0240.2980.382
speciesDesulfovibrio_desulfuricans0.0240.30.384
speciesBacteroides_ovatus0.0230.3130.399
speciesStreptococcus_gordonii0.0230.3190.406
speciesBacteroides_cellulosilyticus0.0230.3240.411
speciesVeillonella_unclassified0.0230.3250.411
speciesVeillonella_atypica0.0230.3290.415
speciesStreptococcus_phage_Sfi210.0220.3320.418
speciesBacteroides_massiliensis0.0220.3460.434
speciesLactococcus_phage_bIL67-0.0210.3580.448
speciesSlackia_piriformis-0.0210.370.462
speciesBacteroides_fluxus0.020.3880.483
speciesHaemophilus_sputorum-0.020.3950.491
genusButyricimonas0.0190.40.494
speciesButyricimonas_synergistica0.0190.40.494
speciesSutterella_parvirubra-0.0190.4060.5
speciesRuminococcus_callidus-0.0190.4140.509
speciesHoldemania_sp_AP20.0190.4160.51
genusMyoviridae_noname-0.0190.4190.512
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0190.4220.515
speciesOscillibacter_sp_KLE_1745-0.0180.4260.518
orderCoriobacteriales-0.0180.4280.518
familyCoriobacteriaceae-0.0180.4280.518
speciesEggerthella_sp_1_3_56FAA-0.0180.4380.529
genusSiphoviridae_noname-0.0180.4450.536
speciesMegamonas_funiformis0.0180.4470.537
speciesMitsuokella_multacida0.0170.4610.551
speciesBacteroides_eggerthii-0.0170.4610.551
speciesBacteroides_coprophilus0.0170.4630.552
speciesStreptococcus_mutans0.0170.4680.556
speciesBifidobacterium_bifidum-0.0170.470.557
speciesHaemophilus_paraphrohaemolyticus0.0160.4870.576
speciesLactobacillus_delbrueckii0.0160.490.578
familyPrevotellaceae-0.0160.4980.586
speciesAlistipes_indistinctus-0.0160.5010.588
orderActinomycetales0.0150.5120.6
speciesParabacteroides_distasonis0.0150.5250.613
speciesEubacterium_cylindroides-0.0140.5430.633
speciesStreptococcus_vestibularis0.0140.5520.642
speciesParabacteroides_sp_20_30.0140.5560.644
familyPodoviridae0.0140.5570.644
speciesBacteroides_finegoldii0.0130.5620.649
genusSlackia0.0130.5690.655
genusLactococcus-0.0130.5710.656
speciesHaemophilus_parainfluenzae0.0120.5970.684
familyAcidaminococcaceae-0.0120.6080.694
familyPorphyromonadaceae-0.0120.6110.694
orderPasteurellales0.0120.6120.694
familyPasteurellaceae0.0120.6120.694
familyViruses_noname0.0120.6150.694
genusViruses_noname0.0120.6150.694
genusSuccinatimonas0.0110.6220.697
speciesSuccinatimonas_hippei0.0110.6220.697
speciesRoseburia_unclassified-0.0110.6220.697
speciesCollinsella_tanakaei0.0110.6270.701
speciesClostridium_sp_KLE_17550.0110.6310.704
genusHaemophilus0.0110.6360.706
speciesCollinsella_unclassified0.0110.6360.706
speciesClostridium_spiroforme0.0110.6460.716
genusActinobacillus-0.010.6540.721
speciesActinobacillus_unclassified-0.010.6540.721
speciesAlistipes_unclassified0.010.6710.738
speciesBacteroides_dorei-0.010.6740.74
genusOxalobacter-0.010.6770.74
speciesOxalobacter_formigenes-0.010.6770.74
orderViruses_noname0.0090.6930.755
speciesDialister_succinatiphilus-0.0090.7010.762
speciesBacteroides_barnesiae-0.0090.7030.763
speciesAggregatibacter_segnis0.0080.7150.772
familySuccinivibrionaceae0.0080.7180.772
genusGordonibacter0.0080.720.772
speciesLactobacillus_casei_paracasei0.0080.720.772
speciesGordonibacter_pamelaeae0.0080.720.772
genusDesulfovibrio0.0080.7270.778
genusParabacteroides0.0080.7330.783
speciesDorea_unclassified-0.0080.7430.792
familyOxalobacteraceae-0.0070.7460.793
speciesRothia_mucilaginosa-0.0070.7490.793
genusAcidaminococcaceae_unclassified-0.0070.7520.793
genusDialister-0.0070.7530.793
speciesDialister_invisus0.0070.7530.793
speciesLactococcus_phage_936_sensu_lato-0.0070.7670.806
speciesBlautia_hydrogenotrophica-0.0060.7820.818
speciesBifidobacterium_longum-0.0060.7820.818
speciesStreptococcus_sanguinis0.0060.7880.822
genusAnaerostipes-0.0060.7890.822
speciesHoldemania_unclassified0.0050.8160.848
speciesEubacterium_sp_3_1_310.0050.8210.851
phylumActinobacteria0.0050.8240.851
classActinobacteria0.0050.8240.851
speciesBacteroides_sp_1_1_60.0050.8370.863
speciesAcidaminococcus_unclassified0.0040.8480.872
speciesOlsenella_unclassified-0.0040.8560.878
genusAggregatibacter0.0040.8610.882
speciesLactobacillus_reuteri-0.0030.8810.898
speciesAlistipes_sp_AP11-0.0030.8830.898
speciesBacteroides_faecis0.0030.8840.898
speciesRuminococcus_sp_JC3040.0030.8850.898
genusBifidobacterium-0.0020.930.942
genusOlsenella0.0020.9460.956
familyMicrococcaceae0.0010.9520.96
orderBifidobacteriales0.0010.9590.963
familyBifidobacteriaceae0.0010.9590.963
genusRothia0.0010.9690.971
genusLambdalikevirus0.00.990.99
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.001117677783410.0003176084297382.1200207311e-0612083.95975
Crohns diseaseSpain17660.003360255688250.002445449452110.00024314951585226698.87448
Type II diabetesChina1831850.00354950937440.001036153534640.0211205567792493816.3191
Rheumatoid arthritisChina127980.0009126905481760.000454640882660.031691037064223067.69
ObesityDenmark1691230.0004637534651930.0001049224211710.2569529569691303542.8628
Liver cirrhosisChina1201140.001890266749560.0003661309940950.3778680335792278376.5326
Type II diabetesSweden53920.0006063345273460.0004906736357620.7030158071082147172.7091
Colorectal cancerAustria64350.004985253145880.001494008369520.7812947138452472383.648
Ulcerative colitisSpain78660.0002577489205530.002445449452110.8077959649312588385.383
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382