MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-05 08:16:53 PST
Job id & description: 2076, traD_nrg
Query type: dna
Count queries & homologs: 1, 9
Min % identity & max e-value: 70%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
traD359094CompleteK03205COG3505ProteobacteriaEscherichia100.0100.099.95
traD357726CompleteK03205COG3505ProteobacteriaEscherichia99.3100.093.32
traD319514CompleteK03205COG3505ProteobacteriaEscherichia87.0583.5696.85
traD330263CompleteK03205COG3505ProteobacteriaEscherichia87.0584.5796.53
traD341530CompleteK03205COG3505ProteobacteriaEscherichia87.085.1696.1
traD308650CompleteK03205COG3505ProteobacteriaEscherichia87.082.1295.78
traD315842CompleteK03205COG3505ProteobacteriaEscherichia87.083.1894.5
traD561866Lack 3'-endK03205COG3505unknownunknown84.4599.2477.08
traD292592CompleteunknownCOG3505ProteobacteriaKlebsiella78.2372.8577.49
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
orderEnterobacteriales0.7062.47e-2825.83e-280
familyEnterobacteriaceae0.7062.47e-2825.83e-280
genusEscherichia0.75.52e-2758.68e-273
speciesEscherichia_coli0.6911.32e-2651.56e-263
classGammaproteobacteria0.6593.07e-2332.9e-231
phylumProteobacteria0.5115.91e-1254.65e-123
genusKlebsiella0.461.87e-981.26e-96
speciesKlebsiella_pneumoniae0.4451.31e-917.73e-90
speciesEscherichia_unclassified0.3959.21e-714.83e-69
genusEnterobacter0.3384.23e-512e-49
speciesEnterobacter_cloacae0.3331.35e-495.79e-48
speciesClostridium_nexile0.3161.21e-444.76e-43
speciesRuminococcus_gnavus0.3074.73e-421.72e-40
genusPantoea0.2893.57e-371.12e-35
speciesPantoea_unclassified0.2893.57e-371.12e-35
familyFusobacteriaceae0.2885.13e-371.51e-35
genusFusobacterium0.2843.89e-361.08e-34
phylumFusobacteria0.2831.02e-352.41e-34
classFusobacteriia0.2831.02e-352.41e-34
orderFusobacteriales0.2831.02e-352.41e-34
genusCitrobacter0.2766.04e-341.36e-32
speciesClostridium_hathewayi0.2756.49e-341.39e-32
genusCoprobacillus0.2732.22e-334.56e-32
speciesCitrobacter_freundii0.2719.22e-331.81e-31
speciesClostridium_bolteae0.2661.5e-312.83e-30
speciesCitrobacter_unclassified0.2621.14e-302.07e-29
speciesEubacterium_siraeum-0.263.39e-305.93e-29
speciesSubdoligranulum_unclassified-0.2521.55e-282.61e-27
speciesCoprobacillus_unclassified0.2512.33e-283.79e-27
genusSubdoligranulum-0.2448.78e-271.38e-25
speciesBacteroides_fragilis0.2372.21e-253.36e-24
speciesClostridium_symbiosum0.2273.5e-235.16e-22
speciesClostridium_ramosum0.2222.97e-224.25e-21
genusMegasphaera0.2191.09e-211.51e-20
speciesKlebsiella_oxytoca0.2191.16e-211.56e-20
genusButyrivibrio-0.2148.18e-211.07e-19
familyClostridiaceae0.2131.06e-201.35e-19
genusCoprococcus-0.2131.55e-201.93e-19
genusClostridium0.2122.08e-202.52e-19
speciesLachnospiraceae_bacterium_7_1_58FAA-0.2081.23e-191.45e-18
speciesClostridiales_bacterium_1_7_47FAA0.2071.56e-191.8e-18
genusFlavonifractor0.2061.9e-192.09e-18
speciesFlavonifractor_plautii0.2061.9e-192.09e-18
speciesEubacterium_ramulus-0.2045.82e-196.24e-18
genusWeissella0.2038.23e-198.63e-18
genusPseudoflavonifractor-0.22.89e-182.9e-17
speciesPseudoflavonifractor_capillosus-0.22.89e-182.9e-17
speciesAnaerotruncus_unclassified-0.1993.41e-183.35e-17
speciesEggerthella_unclassified0.1994.31e-184.15e-17
speciesKlebsiella_unclassified0.1961.08e-171.02e-16
speciesWeissella_confusa0.1924.76e-174.41e-16
genusEubacterium-0.1882.21e-161.98e-15
genusEggerthella0.1882.22e-161.98e-15
familyEubacteriaceae-0.1882.31e-162.02e-15
speciesClostridium_citroniae0.1812.67e-152.29e-14
speciesMegamonas_unclassified0.1812.94e-152.48e-14
genusMegamonas0.1813.46e-152.87e-14
familyRuminococcaceae-0.185.12e-154.17e-14
orderClostridiales-0.1796.02e-154.74e-14
classClostridia-0.1796.03e-154.74e-14
speciesBifidobacterium_adolescentis-0.1781.05e-148.12e-14
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1771.31e-149.97e-14
speciesEubacterium_rectale-0.1771.49e-141.11e-13
genusBarnesiella-0.1761.53e-141.11e-13
speciesBarnesiella_intestinihominis-0.1761.53e-141.11e-13
speciesFusobacterium_mortiferum0.1761.6e-141.14e-13
speciesEubacterium_hallii-0.1761.72e-141.21e-13
speciesClostridium_leptum-0.1762.09e-141.45e-13
phylumSynergistetes0.1752.86e-141.87e-13
classSynergistia0.1752.86e-141.87e-13
orderSynergistales0.1752.86e-141.87e-13
familySynergistaceae0.1752.86e-141.87e-13
genusPyramidobacter0.1734.83e-143.08e-13
speciesPyramidobacter_piscolens0.1734.83e-143.08e-13
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1711.01e-136.27e-13
speciesFusobacterium_ulcerans0.1711.01e-136.27e-13
genusRuminococcaceae_noname-0.171.16e-137.02e-13
speciesRuminococcaceae_bacterium_D16-0.171.16e-137.02e-13
speciesDorea_longicatena-0.171.26e-137.53e-13
speciesCoprococcus_comes-0.171.5e-138.85e-13
speciesLactococcus_garvieae0.171.56e-139.09e-13
speciesBifidobacterium_pseudocatenulatum0.1692.04e-131.17e-12
speciesRoseburia_hominis-0.1682.24e-131.27e-12
speciesStreptococcus_infantarius0.1656.31e-133.55e-12
speciesLactobacillus_salivarius0.1657.63e-134.24e-12
speciesVeillonella_parvula0.1657.78e-134.27e-12
speciesSutterella_wadsworthensis-0.1658.15e-134.42e-12
speciesButyrivibrio_unclassified-0.1641.07e-125.74e-12
familyLeuconostocaceae0.1641.12e-125.94e-12
speciesMegasphaera_unclassified0.1621.72e-128.97e-12
speciesClostridium_perfringens0.1621.73e-128.97e-12
genusEnterococcus0.1621.98e-121.02e-11
familyEnterococcaceae0.1622.1e-121.07e-11
speciesLachnospiraceae_bacterium_6_1_63FAA0.1612.4e-121.21e-11
speciesFusobacterium_varium0.162.97e-121.48e-11
speciesEnterobacter_aerogenes0.163.09e-121.52e-11
speciesMegasphaera_micronuciformis0.1594.18e-122.01e-11
speciesAnaerostipes_hadrus-0.1594.18e-122.01e-11
speciesStreptococcus_thermophilus-0.1586.22e-122.97e-11
genusDorea-0.1578.72e-124.08e-11
speciesWeissella_cibaria0.1578.74e-124.08e-11
speciesFusobacterium_nucleatum0.1578.93e-124.13e-11
genusSutterella-0.1579.08e-124.16e-11
familyBacteroidales_noname-0.1561.32e-115.88e-11
genusBacteroidales_noname-0.1561.32e-115.88e-11
speciesBacteroidales_bacterium_ph8-0.1561.32e-115.88e-11
speciesAlistipes_senegalensis-0.1551.75e-117.72e-11
speciesBacteroides_stercoris0.1542e-118.74e-11
speciesCoprococcus_catus-0.1542.31e-111e-10
speciesCoprococcus_sp_ART55_1-0.1532.81e-111.21e-10
speciesLactobacillus_mucosae0.1514.91e-112.09e-10
genusVeillonella0.156.65e-112.8e-10
phylumVerrucomicrobia-0.157.12e-112.85e-10
classVerrucomicrobiae-0.157.12e-112.85e-10
orderVerrucomicrobiales-0.157.12e-112.85e-10
familyVerrucomicrobiaceae-0.157.12e-112.85e-10
genusAkkermansia-0.157.12e-112.85e-10
speciesAkkermansia_muciniphila-0.157.12e-112.85e-10
orderLactobacillales0.1471.65e-106.54e-10
speciesAnaerostipes_unclassified0.1471.73e-106.8e-10
classBacilli0.1461.96e-107.65e-10
speciesBacteroides_plebeius0.1462.55e-109.87e-10
genusPrevotella0.1452.68e-101.03e-09
speciesC2likevirus_unclassified-0.1452.94e-101.12e-09
speciesBacteroides_uniformis-0.1443.53e-101.33e-09
genusCoprobacter-0.1443.58e-101.33e-09
speciesCoprobacter_fastidiosus-0.1443.58e-101.33e-09
speciesBacteroides_thetaiotaomicron0.1443.71e-101.37e-09
genusC2likevirus-0.1444.37e-101.6e-09
phylumFirmicutes-0.1435.42e-101.97e-09
speciesStreptococcus_anginosus0.1427.17e-102.58e-09
speciesMitsuokella_unclassified-0.1382.03e-097.26e-09
speciesRuminococcus_sp_5_1_39BFAA-0.1363.79e-091.35e-08
speciesPrevotella_stercorea0.1354.06e-091.43e-08
genusClostridiales_noname0.1354.99e-091.74e-08
speciesLachnospiraceae_bacterium_2_1_58FAA0.1355.22e-091.81e-08
genusSolobacterium0.1311.25e-084.28e-08
speciesSolobacterium_moorei0.1311.25e-084.28e-08
genusMitsuokella-0.131.8e-086.11e-08
familyPeptostreptococcaceae0.1292.34e-087.89e-08
speciesCollinsella_aerofaciens-0.1292.43e-088.13e-08
speciesAlistipes_shahii-0.1282.56e-088.51e-08
speciesBacteroides_nordii0.1282.72e-088.98e-08
speciesEnterococcus_faecalis0.1282.88e-089.44e-08
familyMyoviridae0.1273.71e-081.21e-07
speciesEnterococcus_faecium0.1273.89e-081.26e-07
familyClostridiales_noname0.1273.92e-081.26e-07
familyLactobacillaceae0.1255.49e-081.75e-07
genusBlautia0.1256.08e-081.93e-07
genusLactobacillus0.1247.05e-082.22e-07
speciesButyrivibrio_crossotus-0.1247.77e-082.43e-07
speciesAlistipes_putredinis-0.1248.19e-082.54e-07
familyRikenellaceae-0.1221.24e-073.8e-07
genusAlistipes-0.1221.24e-073.8e-07
speciesRuminococcus_lactaris-0.1211.51e-074.6e-07
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1211.53e-074.63e-07
speciesBilophila_unclassified0.1211.62e-074.87e-07
speciesOdoribacter_splanchnicus-0.121.79e-075.35e-07
speciesStreptococcus_salivarius0.121.98e-075.88e-07
speciesStreptococcus_mitis_oralis_pneumoniae0.122.06e-076.08e-07
genusBilophila0.1192.61e-077.65e-07
genusOdoribacter-0.1183.1e-079.03e-07
familyBacillales_noname0.1183.16e-079.09e-07
genusGemella0.1183.16e-079.09e-07
speciesMegamonas_rupellensis0.1183.18e-079.1e-07
speciesBifidobacterium_dentium0.1173.8e-071.07e-06
speciesDorea_formicigenerans-0.1173.8e-071.07e-06
speciesBacteroides_pectinophilus-0.1174.04e-071.14e-06
familyOscillospiraceae-0.1164.7e-071.3e-06
genusOscillibacter-0.1164.7e-071.3e-06
speciesKlebsiella_sp_MS_92_30.1165.05e-071.39e-06
genusCollinsella-0.1155.74e-071.57e-06
genusAnaerotruncus-0.1155.76e-071.57e-06
phylumEuryarchaeota-0.1147.71e-072.09e-06
genusPeptostreptococcaceae_noname0.1138.91e-072.39e-06
speciesMethanobrevibacter_smithii-0.1138.95e-072.39e-06
speciesOscillibacter_unclassified-0.1138.97e-072.39e-06
speciesCoprococcus_eutactus-0.1139.21e-072.44e-06
speciesVeillonella_unclassified0.1139.61e-072.53e-06
genusMorganella0.1131.02e-062.66e-06
speciesMorganella_morganii0.1131.02e-062.66e-06
speciesStreptococcus_lutetiensis0.1121.17e-063.03e-06
speciesBacteroides_intestinalis0.1121.2e-063.1e-06
classMethanobacteria-0.1121.23e-063.12e-06
orderMethanobacteriales-0.1121.23e-063.12e-06
familyMethanobacteriaceae-0.1121.23e-063.12e-06
speciesParaprevotella_unclassified-0.1121.31e-063.31e-06
speciesPrevotella_copri0.1111.36e-063.41e-06
genusMethanobrevibacter-0.1111.63e-064.07e-06
speciesMegamonas_hypermegale0.111.88e-064.67e-06
speciesClostridium_bartlettii0.112.04e-065.04e-06
genusParaprevotella-0.112.07e-065.09e-06
genusPeptostreptococcus0.1092.15e-065.26e-06
speciesHaemophilus_parainfluenzae0.1092.22e-065.4e-06
speciesParaprevotella_xylaniphila-0.1092.35e-065.69e-06
familySiphoviridae-0.1092.44e-065.88e-06
speciesAlistipes_sp_HGB5-0.1092.46e-065.89e-06
familyVeillonellaceae0.1082.69e-066.41e-06
speciesLachnospiraceae_bacterium_2_1_46FAA0.1082.88e-066.83e-06
orderPasteurellales0.1082.92e-066.86e-06
familyPasteurellaceae0.1082.92e-066.86e-06
genusHaemophilus0.1083.14e-067.34e-06
speciesStreptococcus_australis0.1073.71e-068.63e-06
genusAdlercreutzia-0.1073.89e-068.96e-06
speciesAdlercreutzia_equolifaciens-0.1073.89e-068.96e-06
speciesPorphyromonas_uenonis0.1055.16e-061.18e-05
speciesClostridium_clostridioforme0.1037.5e-061.71e-05
classDeltaproteobacteria0.1037.92e-061.78e-05
orderDesulfovibrionales0.1037.92e-061.78e-05
familyDesulfovibrionaceae0.1037.92e-061.78e-05
speciesLeuconostoc_lactis0.1038.85e-061.98e-05
speciesStreptococcus_pasteurianus0.1028.98e-061.99e-05
speciesPrevotella_buccae0.1028.99e-061.99e-05
speciesVeillonella_dispar0.1029.76e-062.15e-05
speciesLactobacillus_sanfranciscensis0.1011.12e-052.46e-05
speciesAcidaminococcus_intestini0.1011.13e-052.47e-05
familyBacteroidaceae0.1011.14e-052.47e-05
genusBacteroides0.1011.14e-052.47e-05
classEpsilonproteobacteria0.0991.71e-053.67e-05
orderCampylobacterales0.0991.71e-053.67e-05
familyStreptococcaceae0.0972.53e-055.4e-05
speciesAlistipes_onderdonkii-0.0972.56e-055.44e-05
speciesPrevotella_bivia0.0972.8e-055.9e-05
speciesBacteroides_salyersiae0.0972.8e-055.9e-05
speciesParabacteroides_goldsteinii0.0972.9e-056.06e-05
speciesEubacterium_biforme-0.0972.9e-056.06e-05
genusCampylobacter0.0963.1e-056.45e-05
familyCampylobacteraceae0.0963.15e-056.52e-05
speciesParaprevotella_clara-0.0963.46e-057.13e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.0953.53e-057.24e-05
speciesCoprobacillus_sp_D60.0954.22e-058.62e-05
speciesEubacterium_limosum0.0944.38e-058.91e-05
speciesProteus_mirabilis0.0944.76e-059.64e-05
orderBacillales0.0944.8e-059.68e-05
speciesRuminococcus_champanellensis-0.0935.38e-050.000108
genusProteus0.0935.74e-050.000115
speciesLactobacillus_amylovorus0.0917.89e-050.000157
genusStreptococcus0.0917.9e-050.000157
speciesRoseburia_intestinalis-0.0918.63e-050.00017
genusFaecalibacterium-0.0890.0001130.000221
speciesFaecalibacterium_prausnitzii-0.0890.0001130.000221
speciesPeptostreptococcus_stomatis0.0890.000120.000234
speciesBacteroides_oleiciplenus0.0880.0001320.000255
speciesBilophila_wadsworthia0.0880.0001320.000255
speciesEnterobacteria_phage_HK5440.0880.0001330.000256
familyClostridiales_Family_XI_Incertae_Sedis0.0880.0001340.000257
familyLachnospiraceae-0.0880.0001350.000258
genusRuminococcus-0.0880.000140.000266
speciesLactobacillus_plantarum0.0880.0001480.000281
speciesGemella_morbillorum0.0870.0001520.000287
speciesMegasphaera_elsdenii0.0860.0001810.00034
speciesParabacteroides_merdae-0.0860.0001860.000348
genusPorphyromonas0.0860.0002070.000386
genusPeptoniphilus0.0850.0002150.0004
speciesEggerthella_lenta0.0850.0002160.0004
speciesBacteroides_coprocola0.0850.0002390.000441
familyPropionibacteriaceae-0.0850.000250.000459
speciesMegamonas_funiformis0.0840.0002630.000481
genusAnaerostipes-0.0840.000270.000488
speciesVeillonella_atypica0.0840.000270.000488
speciesBacteroides_xylanisolvens0.0840.000270.000488
speciesAggregatibacter_segnis0.0820.00040.000721
speciesLactococcus_phage_P680-0.0810.0004650.000835
speciesRuminococcus_obeum-0.080.0005330.000953
speciesEubacterium_ventriosum-0.080.0005730.00102
speciesClostridium_asparagiforme0.0790.000580.00103
speciesCoprobacillus_sp_29_10.0790.0005850.00103
speciesAcidaminococcus_fermentans0.0790.0006320.00111
speciesLactobacillus_oris0.0790.0006490.00114
speciesLachnospiraceae_bacterium_1_4_56FAA0.0780.0007050.00123
speciesErysipelotrichaceae_bacterium_2_2_44A0.0780.0007850.00137
speciesLactobacillus_vaginalis0.0770.0008790.00153
speciesCampylobacter_concisus0.0760.000970.00168
speciesClostridium_sp_ATCC_BAA_4420.0750.001120.00193
speciesOdoribacter_unclassified-0.0740.001380.00237
speciesAnaerotruncus_colihominis0.0740.001420.00243
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0730.001530.00261
speciesBacteroides_finegoldii0.0730.001640.00278
speciesBacteroides_sp_3_1_190.0720.001790.00303
speciesPropionibacterium_freudenreichii-0.0720.001920.00324
speciesLactococcus_phage_jm2-0.0710.00210.00353
familyPorphyromonadaceae-0.0710.002130.00357
speciesLactobacillus_crispatus0.0690.002920.00487
speciesBifidobacterium_angulatum-0.0690.003030.00504
speciesMethanobrevibacter_unclassified-0.0680.003110.00515
speciesOscillibacter_sp_KLE_1745-0.0680.003140.00518
speciesCollinsella_tanakaei0.0680.003310.00544
speciesLactobacillus_gasseri0.0680.003440.00564
speciesParabacteroides_sp_D13-0.0680.003460.00565
speciesBlautia_hydrogenotrophica-0.0670.003630.00591
speciesParabacteroides_johnsonii0.0670.003730.00605
speciesErysipelotrichaceae_bacterium_21_3-0.0670.003840.00621
genusPropionibacterium-0.0670.003880.00625
genusLambdalikevirus0.0660.004130.00663
speciesEubacterium_dolichum0.0660.00420.00671
speciesRoseburia_unclassified-0.0660.004210.00671
genusAggregatibacter0.0660.004310.00685
speciesBlautia_producta0.0660.004540.00719
speciesLachnospiraceae_bacterium_1_1_57FAA0.0650.004630.00731
genusPhascolarctobacterium-0.0650.00480.00753
speciesPhascolarctobacterium_succinatutens-0.0650.00480.00753
classNegativicutes0.0650.005110.00796
orderSelenomonadales0.0650.005110.00796
familySutterellaceae-0.0640.005480.00851
speciesAlistipes_indistinctus-0.0630.006390.00989
speciesLactobacillus_fermentum0.0630.006750.0104
genusSiphoviridae_noname-0.0620.006920.0106
speciesBifidobacterium_breve0.0620.006960.0107
speciesBifidobacterium_catenulatum-0.0620.006980.0107
speciesAlistipes_finegoldii-0.0620.007540.0115
speciesEubacterium_eligens-0.0620.00760.0115
genusAcidaminococcus0.060.00890.0135
speciesBacteroides_salanitronis-0.060.00960.0145
genusCatenibacterium-0.060.009750.0146
speciesCatenibacterium_mitsuokai-0.060.009750.0146
speciesTuricibacter_unclassified-0.0590.0110.0164
speciesOlsenella_unclassified-0.0590.01110.0165
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0590.01120.0166
speciesClostridium_sp_L2_50-0.0580.01150.017
genusDialister-0.0580.01250.0184
familyActinomycetaceae0.0570.01410.0207
genusClostridiaceae_noname0.0560.01530.0224
speciesClostridiaceae_bacterium_JC1180.0560.01530.0224
genusRoseburia-0.0550.01660.0242
orderCoriobacteriales-0.0550.01780.0258
familyCoriobacteriaceae-0.0550.01780.0258
speciesEubacterium_cylindroides-0.0550.01790.0258
speciesBifidobacterium_animalis-0.0540.01890.0272
phylumViruses_noname-0.0540.01910.0273
classViruses_noname-0.0540.01910.0273
speciesLactococcus_phage_phi7-0.0540.01930.0275
genusMyoviridae_noname0.0540.01990.0283
speciesBacteroides_massiliensis0.0530.02110.0299
genusBurkholderiales_noname0.0530.02190.0309
speciesBurkholderiales_bacterium_1_1_470.0530.02190.0309
speciesPorphyromonas_asaccharolytica0.0520.02360.0332
speciesDialister_invisus-0.0520.02490.0349
genusLeuconostoc0.0520.02550.0356
genusOlsenella-0.0510.0260.0362
speciesBacteroides_ovatus0.0510.02640.0366
genusParvimonas0.0510.02670.0369
orderCaudovirales-0.0510.02680.0369
speciesParvimonas_unclassified0.0510.02680.0369
familyBurkholderiales_noname0.0510.02790.0383
speciesStreptococcus_gordonii0.0510.02850.039
genusTuricibacter-0.0510.0290.0396
speciesBacteroides_dorei-0.050.02950.0401
genusActinomyces0.050.03030.0411
speciesLactobacillus_acidophilus-0.050.03080.0417
genusAcidaminococcaceae_unclassified-0.050.03150.0424
speciesErysipelotrichaceae_bacterium_3_1_530.050.03150.0424
familyPodoviridae0.0480.03710.0497
orderBurkholderiales-0.0480.03730.0499
genusTunalikevirus0.0480.03810.0508
speciesStreptococcus_vestibularis0.0470.04360.058
speciesOdoribacter_laneus0.0460.04530.0601
speciesAlistipes_sp_AP11-0.0460.04570.0604
genusActinobacillus0.0460.04910.0646
speciesActinobacillus_unclassified0.0460.04910.0646
speciesDesulfovibrio_piger-0.0450.05080.0666
speciesHaemophilus_paraphrohaemolyticus0.0450.05140.0672
speciesPeptostreptococcus_anaerobius0.0450.05280.0688
speciesBacteroides_caccae0.0450.05420.0705
speciesOscillibacter_sp_KLE_1728-0.0440.05990.0777
speciesParabacteroides_unclassified0.0420.06990.0904
speciesDorea_unclassified-0.0420.07080.0913
classBetaproteobacteria-0.0420.07180.0923
speciesBacteroides_barnesiae-0.0410.07580.0972
speciesBacteroides_clarus0.040.08010.102
speciesLactococcus_phage_bIL67-0.040.08070.103
speciesKlebsiella_phage_KP360.040.08590.109
speciesTuricibacter_sanguinis-0.0390.08790.112
speciesParabacteroides_distasonis0.0390.09030.114
genusParasutterella0.0390.09360.118
speciesParasutterella_excrementihominis0.0390.09360.118
familyAcidaminococcaceae-0.0390.09460.119
speciesRuminococcus_bromii-0.0380.09780.122
speciesEggerthella_sp_1_3_56FAA-0.0380.1030.129
speciesStreptococcus_sanguinis0.0370.1080.135
speciesSubdoligranulum_sp_4_3_54A2FAA0.0370.1090.135
speciesBacteroides_sp_2_1_22-0.0370.110.136
orderAeromonadales0.0370.1140.141
genusGordonibacter-0.0360.1210.148
speciesGordonibacter_pamelaeae-0.0360.1210.148
speciesBifidobacterium_bifidum0.0360.1210.148
speciesBacteroides_sp_1_1_6-0.0360.1220.149
speciesRothia_mucilaginosa0.0350.1270.155
familyPrevotellaceae0.0350.1340.163
speciesLactococcus_lactis-0.0340.1460.177
familyMicrococcaceae0.0330.1490.18
speciesStreptococcus_mutans0.0330.1510.182
genusRothia0.0330.1550.187
speciesLactobacillus_rhamnosus-0.0320.1630.196
speciesBacteroides_coprophilus0.0320.1670.2
phylumBacteroidetes0.0310.1770.21
classBacteroidia0.0310.1770.21
orderBacteroidales0.0310.1770.21
classErysipelotrichia0.0310.180.212
orderErysipelotrichales0.0310.180.212
familyErysipelotrichaceae0.0310.180.212
orderViruses_noname-0.0310.1840.216
speciesStreptococcus_parasanguinis-0.0310.1840.216
speciesClostridium_spiroforme-0.0310.1850.217
speciesBacteroides_eggerthii0.030.1940.226
speciesRoseburia_inulinivorans-0.030.1940.226
orderActinomycetales0.030.1960.228
speciesLactococcus_phage_936_sensu_lato-0.0290.2040.237
speciesSutterella_parvirubra0.0290.2080.241
speciesHoldemania_filiformis-0.0270.2410.278
speciesCollinsella_intestinalis0.0260.2580.297
speciesErysipelotrichaceae_bacterium_6_1_450.0260.2620.301
genusMethanosphaera-0.0260.2660.304
speciesMethanosphaera_stadtmanae-0.0260.2660.304
speciesPeptostreptococcaceae_noname_unclassified-0.0250.2810.32
speciesHaemophilus_sputorum0.0250.2820.321
speciesAcidaminococcus_unclassified-0.0250.2860.324
speciesBifidobacterium_longum-0.0250.2870.325
genusOxalobacter-0.0240.3060.345
speciesOxalobacter_formigenes-0.0240.3060.345
orderPseudomonadales0.0230.3170.356
speciesAlistipes_unclassified-0.0230.3190.358
familyOxalobacteraceae-0.0220.3310.37
speciesBacteroides_faecis0.0220.3350.374
genusStaphylococcus-0.0220.3380.376
speciesBacteroides_vulgatus0.0210.3620.402
genusBifidobacterium-0.0210.3710.411
speciesBacteroides_sp_4_3_47FAA0.020.3760.416
speciesLactobacillus_delbrueckii-0.020.3810.42
genusCoriobacteriaceae_noname0.020.3840.422
speciesRuminococcus_callidus0.0190.4090.449
genusSutterellaceae_unclassified-0.0180.4380.48
genusLachnospiraceae_noname0.0180.4430.484
genusSlackia0.0170.4570.498
orderBifidobacteriales-0.0170.4720.512
familyBifidobacteriaceae-0.0170.4720.512
speciesEubacterium_sp_3_1_31-0.0160.4880.528
genusButyricicoccus0.0160.4950.533
speciesButyricicoccus_pullicaecorum0.0160.4950.533
speciesLactobacillus_casei_paracasei-0.0160.4970.534
speciesCoriobacteriaceae_bacterium_phI0.0160.4980.534
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0150.5170.553
phylumActinobacteria-0.0130.5680.605
classActinobacteria-0.0130.5680.605
speciesLactobacillus_ruminis-0.0130.5690.605
familyStaphylococcaceae-0.0130.5710.606
speciesHoldemania_unclassified-0.0130.5840.618
familyViruses_noname0.0120.5910.623
genusViruses_noname0.0120.5910.623
genusLactococcus0.0120.5940.624
genusParabacteroides-0.0120.5950.624
genusErysipelotrichaceae_noname-0.0120.6060.634
speciesRuminococcus_torques0.0120.6150.642
speciesDesulfovibrio_desulfuricans-0.0110.6340.661
speciesRuminococcus_sp_JC3040.0110.6370.662
speciesHoldemania_sp_AP20.0110.6390.663
familySuccinivibrionaceae-0.010.6520.675
genusDesulfovibrio-0.010.6760.698
speciesCollinsella_unclassified-0.0090.6940.715
speciesSlackia_piriformis-0.0090.6950.715
speciesBacteroides_cellulosilyticus-0.0090.6970.715
genusSuccinatimonas-0.0090.7070.722
speciesSuccinatimonas_hippei-0.0090.7070.722
speciesClostridium_sp_KLE_1755-0.0080.7150.729
speciesBacteroides_fluxus0.0070.7540.767
speciesParabacteroides_sp_20_3-0.0040.8490.862
speciesMitsuokella_multacida0.0040.8790.89
genusHoldemania-0.0020.9270.937
speciesDialister_succinatiphilus0.0020.9370.945
genusButyricimonas0.0020.9440.948
speciesButyricimonas_synergistica0.0020.9440.948
speciesLactobacillus_reuteri-0.0010.9740.976
speciesStreptococcus_phage_Sfi210.00.9880.988
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.004903054090950.001498665024821.40596266935e-0611833.8778
Crohns diseaseSpain17660.02028054614610.007537576490160.00015465814455323057.66417
Type II diabetesChina1831850.02320202997140.009774444205970.0175683406187457115.1062
Liver cirrhosisChina1201140.02403764906260.004322899852560.02454981047221266442.5409
ObesityDenmark1691230.002173638823720.0005160761002590.2373365350981235240.6169
Rheumatoid arthritisChina127980.01051996366030.006113929350060.3239303117421274442.4984
Type II diabetesSweden53920.002816322953880.003875282400370.5231067228641670856.5798
Colorectal cancerAustria64350.02695424029690.01060347944510.5751985109742000067.6682
Ulcerative colitisSpain78660.001631127984850.007537576490160.8044554549822580685.129
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382