MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-06 22:16:47 PST
Job id & description: 2083, traG_nrg
Query type: dna
Count queries & homologs: 1, 16
Min % identity & max e-value: 70%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
traG157065CompleteK12056NOG12793ProteobacteriaEscherichia100.0100.097.1
traG156848CompleteK12056NOG12793ProteobacteriaEscherichia96.7896.6794.7
traG156772CompleteK12056NOG12793;NOG299215ProteobacteriaEscherichia94.6594.5595.29
traG157888CompleteK12056NOG12793ProteobacteriaEscherichia99.7999.8992.35
traG152867CompleteK12056NOG299215ProteobacteriaEscherichia94.6594.5993.29
traG157240CompleteK12056NOG12793ProteobacteriaEscherichia100.0100.091.4
traG153298CompleteK12056NOG12793ProteobacteriaEscherichia100.0100.089.86
traG158690CompleteK12056NOG12793ProteobacteriaEscherichia98.1698.3789.83
traG156677CompleteK12056NOG299215ProteobacteriaEscherichia94.6594.5589.96
traG154227CompleteK12056NOG12793ProteobacteriaEscherichia99.7999.8988.68
traG157039CompleteK12056NOG299215ProteobacteriaEscherichia96.7896.6789.34
traG158055CompleteK12056NOG12793ProteobacteriaEscherichia91.9692.0690.31
traG317092Lack 5'-endK12056NOG12793ProteobacteriaEscherichia79.2199.5194.01
traG313797Lack 5'-endK12056NOG12793ProteobacteriaEscherichia78.2997.9693.91
traG153686CompleteK12056NOG12793ProteobacteriaEscherichia100.0100.087.64
traG153691CompleteK12056NOG12793ProteobacteriaEscherichia100.0100.085.57
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEscherichia_coli0.6381.73e-2148.17e-212
genusEscherichia0.6291.18e-2062.78e-204
orderEnterobacteriales0.5815.78e-1696.82e-167
familyEnterobacteriaceae0.5815.78e-1696.82e-167
classGammaproteobacteria0.535.85e-1365.52e-134
phylumProteobacteria0.4041.69e-741.33e-72
speciesEscherichia_unclassified0.3183e-452.02e-43
speciesRuminococcus_gnavus0.2997.15e-404.22e-38
speciesClostridium_bolteae0.2852.45e-361.28e-34
speciesClostridium_nexile0.2846.2e-362.93e-34
speciesClostridium_hathewayi0.285.48e-352.35e-33
genusKlebsiella0.2781.58e-346.21e-33
genusCoprobacillus0.2732.57e-339.33e-32
familyFusobacteriaceae0.2546.37e-292.15e-27
speciesKlebsiella_pneumoniae0.2513.25e-281.02e-26
speciesCoprobacillus_unclassified0.2497.5e-282.21e-26
genusFusobacterium0.2481.44e-273.89e-26
phylumFusobacteria0.2481.65e-273.89e-26
classFusobacteriia0.2481.65e-273.89e-26
orderFusobacteriales0.2481.65e-273.89e-26
speciesBacteroides_fragilis0.2448.29e-271.86e-25
speciesClostridium_symbiosum0.2341.3e-242.79e-23
speciesEubacterium_siraeum-0.2213.7e-227.59e-21
speciesClostridium_ramosum0.226.78e-221.33e-20
speciesClostridiales_bacterium_1_7_47FAA0.2191e-211.89e-20
familyClostridiaceae0.2191.04e-211.89e-20
genusClostridium0.2163.46e-216.05e-20
genusFlavonifractor0.2112.77e-204.51e-19
speciesFlavonifractor_plautii0.2112.77e-204.51e-19
speciesSubdoligranulum_unclassified-0.214.33e-206.81e-19
genusCoprococcus-0.2071.43e-192.18e-18
genusCitrobacter0.2054.09e-196.03e-18
genusEnterobacter0.2029.56e-191.37e-17
speciesEggerthella_unclassified0.2011.45e-182.01e-17
genusSubdoligranulum-0.2011.67e-182.25e-17
speciesCitrobacter_freundii0.1978.29e-181.09e-16
speciesEnterobacter_cloacae0.1979.6e-181.22e-16
genusButyrivibrio-0.1961.24e-171.54e-16
genusEggerthella0.1933.63e-174.39e-16
speciesEubacterium_ramulus-0.191.08e-161.27e-15
genusPantoea0.1891.51e-161.7e-15
speciesPantoea_unclassified0.1891.51e-161.7e-15
speciesCitrobacter_unclassified0.1864.46e-164.9e-15
genusEubacterium-0.1831.29e-151.38e-14
familyEubacteriaceae-0.1831.32e-151.38e-14
genusMegasphaera0.1831.53e-151.57e-14
genusPseudoflavonifractor-0.184.39e-154.32e-14
speciesPseudoflavonifractor_capillosus-0.184.39e-154.32e-14
speciesClostridium_citroniae0.1797.26e-156.99e-14
speciesFusobacterium_ulcerans0.1743.59e-143.39e-13
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1734.98e-144.61e-13
speciesAnaerotruncus_unclassified-0.171.34e-131.22e-12
familyRuminococcaceae-0.1665.19e-134.62e-12
speciesLachnospiraceae_bacterium_6_1_63FAA0.1665.62e-134.91e-12
speciesCoprococcus_comes-0.163.37e-122.89e-11
speciesEubacterium_rectale-0.163.8e-123.2e-11
classClostridia-0.1594.07e-123.31e-11
orderClostridiales-0.1594.07e-123.31e-11
speciesCoprococcus_sp_ART55_1-0.1594.29e-123.43e-11
speciesBifidobacterium_adolescentis-0.1594.79e-123.77e-11
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1594.93e-123.81e-11
speciesLachnospiraceae_bacterium_2_1_58FAA0.1587.33e-125.58e-11
phylumSynergistetes0.1579.71e-126.94e-11
classSynergistia0.1579.71e-126.94e-11
orderSynergistales0.1579.71e-126.94e-11
familySynergistaceae0.1579.71e-126.94e-11
speciesDorea_longicatena-0.1561.36e-119.58e-11
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1551.49e-111.03e-10
genusPyramidobacter0.1551.75e-111.18e-10
speciesPyramidobacter_piscolens0.1551.75e-111.18e-10
speciesCoprococcus_catus-0.1551.83e-111.22e-10
speciesEubacterium_hallii-0.1541.95e-111.28e-10
speciesKlebsiella_unclassified0.1514.98e-113.22e-10
speciesFusobacterium_varium0.1515.44e-113.47e-10
genusRuminococcaceae_noname-0.1515.72e-113.55e-10
speciesRuminococcaceae_bacterium_D16-0.1515.72e-113.55e-10
speciesRoseburia_hominis-0.1471.72e-101.05e-09
speciesClostridium_clostridioforme0.1452.88e-101.74e-09
genusWeissella0.1453.38e-102.02e-09
genusClostridiales_noname0.1443.79e-102.24e-09
speciesLactobacillus_salivarius0.1435.9e-103.44e-09
speciesButyrivibrio_unclassified-0.1426.99e-104.02e-09
familyClostridiales_noname0.1427.2e-104.09e-09
speciesStreptococcus_thermophilus-0.1427.7e-104.33e-09
speciesAlistipes_senegalensis-0.1419.18e-105.1e-09
genusBarnesiella-0.1411.05e-095.7e-09
speciesBarnesiella_intestinihominis-0.1411.05e-095.7e-09
speciesBifidobacterium_pseudocatenulatum0.141.1e-095.9e-09
genusDorea-0.141.2e-096.36e-09
speciesAnaerostipes_unclassified0.1372.55e-091.34e-08
familyBacteroidales_noname-0.1363.17e-091.61e-08
genusBacteroidales_noname-0.1363.17e-091.61e-08
speciesBacteroidales_bacterium_ph8-0.1363.17e-091.61e-08
speciesSutterella_wadsworthensis-0.1354.53e-092.27e-08
speciesMegasphaera_unclassified0.1355e-092.48e-08
speciesFusobacterium_nucleatum0.1345.78e-092.84e-08
speciesLactobacillus_mucosae0.1337.25e-093.53e-08
genusBlautia0.1337.61e-093.67e-08
speciesClostridium_leptum-0.1338.45e-094.03e-08
genusSutterella-0.1338.57e-094.05e-08
speciesBacteroides_thetaiotaomicron0.1338.72e-094.08e-08
genusEnterococcus0.1329.59e-094.44e-08
familyEnterococcaceae0.1321.05e-084.77e-08
speciesAnaerostipes_hadrus-0.1321.05e-084.77e-08
phylumFirmicutes-0.1321.07e-084.81e-08
speciesBacteroides_stercoris0.131.49e-086.63e-08
genusCoprobacter-0.131.74e-087.6e-08
speciesCoprobacter_fastidiosus-0.131.74e-087.6e-08
speciesMitsuokella_unclassified-0.1282.52e-081.09e-07
speciesWeissella_confusa0.1273.6e-081.54e-07
speciesFusobacterium_mortiferum0.1273.9e-081.66e-07
speciesBacteroides_pectinophilus-0.1255.36e-082.26e-07
speciesKlebsiella_oxytoca0.1255.78e-082.41e-07
speciesC2likevirus_unclassified-0.1248.4e-083.48e-07
speciesParaprevotella_unclassified-0.1238.62e-083.54e-07
speciesBilophila_unclassified0.1239.45e-083.85e-07
genusParaprevotella-0.1239.57e-083.86e-07
speciesMegasphaera_micronuciformis0.1231.02e-074.08e-07
genusC2likevirus-0.1231.05e-074.16e-07
genusBilophila0.1221.14e-074.48e-07
familySiphoviridae-0.1211.53e-075.97e-07
genusPrevotella0.1211.71e-076.62e-07
genusMitsuokella-0.1192.23e-078.49e-07
speciesButyrivibrio_crossotus-0.1192.23e-078.49e-07
speciesCollinsella_aerofaciens-0.1192.28e-078.61e-07
speciesCoprococcus_eutactus-0.1183.15e-071.18e-06
speciesMegamonas_unclassified0.1173.71e-071.38e-06
genusMegamonas0.1173.83e-071.41e-06
speciesVeillonella_parvula0.1173.86e-071.41e-06
speciesPrevotella_stercorea0.1174.13e-071.5e-06
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1164.48e-071.61e-06
speciesStreptococcus_infantarius0.1164.99e-071.72e-06
speciesBacteroides_uniformis-0.1165.01e-071.72e-06
phylumVerrucomicrobia-0.1165.07e-071.72e-06
classVerrucomicrobiae-0.1165.07e-071.72e-06
orderVerrucomicrobiales-0.1165.07e-071.72e-06
familyVerrucomicrobiaceae-0.1165.07e-071.72e-06
genusAkkermansia-0.1165.07e-071.72e-06
speciesAkkermansia_muciniphila-0.1165.07e-071.72e-06
familyBacteroidaceae0.1155.58e-071.87e-06
genusBacteroides0.1155.58e-071.87e-06
speciesRuminococcus_lactaris-0.1155.88e-071.95e-06
speciesParaprevotella_xylaniphila-0.1156.11e-072.02e-06
speciesPrevotella_bivia0.1139.46e-073.1e-06
speciesRuminococcus_sp_5_1_39BFAA-0.1131.06e-063.43e-06
speciesAlistipes_putredinis-0.1131.06e-063.43e-06
familyLeuconostocaceae0.1131.07e-063.44e-06
speciesClostridium_perfringens0.1121.09e-063.48e-06
genusSolobacterium0.1121.11e-063.49e-06
speciesSolobacterium_moorei0.1121.11e-063.49e-06
speciesEnterococcus_faecium0.1111.47e-064.59e-06
speciesEubacterium_biforme-0.1111.49e-064.63e-06
classDeltaproteobacteria0.1111.58e-064.81e-06
orderDesulfovibrionales0.1111.58e-064.81e-06
familyDesulfovibrionaceae0.1111.58e-064.81e-06
orderLactobacillales0.111.72e-065.2e-06
speciesAlistipes_shahii-0.111.82e-065.47e-06
speciesStreptococcus_anginosus0.111.83e-065.47e-06
classBacilli0.1092.22e-066.59e-06
familyPeptostreptococcaceae0.1092.4e-067.08e-06
familyLactobacillaceae0.1092.43e-067.12e-06
speciesLactococcus_garvieae0.1082.64e-067.69e-06
speciesParaprevotella_clara-0.1082.73e-067.91e-06
genusFaecalibacterium-0.1082.77e-067.91e-06
speciesFaecalibacterium_prausnitzii-0.1082.77e-067.91e-06
speciesEubacterium_limosum0.1082.8e-067.91e-06
phylumEuryarchaeota-0.1082.83e-067.91e-06
classMethanobacteria-0.1082.85e-067.91e-06
orderMethanobacteriales-0.1082.85e-067.91e-06
familyMethanobacteriaceae-0.1082.85e-067.91e-06
speciesBacteroides_nordii0.1082.91e-068.03e-06
genusLactobacillus0.1073.32e-069.11e-06
genusMethanobrevibacter-0.1073.45e-069.41e-06
speciesWeissella_cibaria0.1073.84e-061.04e-05
speciesMethanobrevibacter_smithii-0.1073.84e-061.04e-05
speciesRoseburia_intestinalis-0.1073.89e-061.04e-05
speciesAlistipes_sp_HGB5-0.1073.9e-061.04e-05
speciesDorea_formicigenerans-0.1055e-061.33e-05
speciesEnterobacter_aerogenes0.1055.63e-061.48e-05
speciesAcidaminococcus_intestini0.1055.64e-061.48e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.1046.26e-061.63e-05
genusAdlercreutzia-0.1046.31e-061.63e-05
speciesAdlercreutzia_equolifaciens-0.1046.31e-061.63e-05
speciesAnaerotruncus_colihominis0.1046.84e-061.75e-05
speciesLachnospiraceae_bacterium_2_1_46FAA0.1047.22e-061.84e-05
genusCollinsella-0.1038.14e-062.07e-05
speciesPorphyromonas_uenonis0.1038.78e-062.22e-05
speciesErysipelotrichaceae_bacterium_2_2_44A0.1029.24e-062.32e-05
speciesStreptococcus_pasteurianus0.1011.25e-053.12e-05
speciesStreptococcus_lutetiensis0.11.39e-053.45e-05
genusVeillonella0.11.45e-053.58e-05
speciesBacteroides_plebeius0.11.49e-053.66e-05
speciesClostridium_asparagiforme0.11.52e-053.72e-05
genusPeptoniphilus0.0991.9e-054.62e-05
speciesEggerthella_lenta0.0982.06e-054.99e-05
genusMorganella0.0972.55e-056.11e-05
speciesMorganella_morganii0.0972.55e-056.11e-05
genusPeptostreptococcus0.0953.85e-059.18e-05
speciesCoprobacillus_sp_D60.0944.44e-050.000105
speciesEnterococcus_faecalis0.0935.37e-050.000127
genusPeptostreptococcaceae_noname0.0935.55e-050.00013
familyRikenellaceae-0.0926.4e-050.000149
genusAlistipes-0.0926.4e-050.000149
speciesClostridium_bartlettii0.0926.84e-050.000158
speciesOdoribacter_splanchnicus-0.0917.51e-050.000173
speciesBilophila_wadsworthia0.0918.05e-050.000184
speciesMegamonas_rupellensis0.0918.82e-050.000201
speciesLactobacillus_amylovorus0.090.0001050.000238
speciesAcidaminococcus_fermentans0.0890.0001180.000266
genusOdoribacter-0.0890.0001260.000283
speciesParabacteroides_goldsteinii0.0880.0001310.000293
speciesBacteroides_intestinalis0.0880.0001340.000298
familyClostridiales_Family_XI_Incertae_Sedis0.0880.0001370.000304
speciesStreptococcus_salivarius0.0870.0001550.000342
speciesParabacteroides_merdae-0.0870.0001580.000347
familyBacillales_noname0.0870.0001710.000372
genusGemella0.0870.0001710.000372
genusPorphyromonas0.0860.0002030.00044
speciesMegasphaera_elsdenii0.0850.0002340.000504
speciesGemella_morbillorum0.0840.0002670.000573
speciesBifidobacterium_dentium0.0840.000290.000619
familyMyoviridae0.0830.0003060.000651
speciesCoprobacillus_sp_29_10.0830.0003130.000662
speciesBifidobacterium_angulatum-0.0830.0003260.000687
speciesBlautia_producta0.0820.0003860.00081
speciesStreptococcus_mitis_oralis_pneumoniae0.0820.0003930.000821
phylumViruses_noname-0.0820.0003970.000822
classViruses_noname-0.0820.0003970.000822
genusAnaerotruncus-0.0810.000430.000884
speciesEubacterium_dolichum0.0810.0004310.000884
speciesBacteroides_oleiciplenus0.0810.0004380.000895
speciesRuminococcus_champanellensis-0.0810.000440.000895
speciesRuminococcus_obeum-0.080.0005090.00103
speciesPrevotella_buccae0.0790.0005940.0012
genusProteus0.0790.0006320.00127
speciesBacteroides_xylanisolvens0.0790.0006380.00128
orderCaudovirales-0.0780.0006930.00138
speciesBacteroides_salyersiae0.0780.0006960.00138
familyVeillonellaceae0.0780.0007510.00148
speciesEubacterium_eligens-0.0780.0007510.00148
speciesPrevotella_copri0.0770.0008070.00158
familyLachnospiraceae-0.0770.0008690.00169
speciesLactobacillus_sanfranciscensis0.0760.0009450.00184
speciesOscillibacter_unclassified-0.0760.000990.00191
genusAcidaminococcus0.0760.0009920.00191
genusRuminococcus-0.0750.001170.00223
speciesLactococcus_phage_P680-0.0750.001170.00223
speciesMegamonas_hypermegale0.0750.001170.00223
speciesLactobacillus_crispatus0.0750.001190.00226
speciesBacteroides_sp_3_1_190.0740.001330.00251
familyOscillospiraceae-0.0740.001370.00257
genusOscillibacter-0.0740.001370.00257
speciesStreptococcus_australis0.0740.001380.00257
speciesPeptostreptococcus_stomatis0.0730.001640.00305
classEpsilonproteobacteria0.0720.001790.0033
orderCampylobacterales0.0720.001790.0033
genusClostridiaceae_noname0.0720.001820.00333
speciesClostridiaceae_bacterium_JC1180.0720.001820.00333
genusRoseburia-0.0720.001880.00343
speciesClostridium_sp_ATCC_BAA_4420.0720.001910.00345
speciesLachnospiraceae_bacterium_1_4_56FAA0.0720.001910.00345
familyCampylobacteraceae0.0710.002210.00398
speciesLactococcus_phage_phi7-0.070.002440.00438
genusCampylobacter0.070.002550.00456
speciesEubacterium_ventriosum-0.070.002610.00465
speciesParabacteroides_unclassified0.0690.002750.00488
speciesLactococcus_lactis-0.0690.002870.00507
speciesKlebsiella_sp_MS_92_30.0690.0030.00528
speciesProteus_mirabilis0.0680.003180.00558
speciesParabacteroides_johnsonii0.0680.003220.00563
orderBacillales0.0680.003280.00571
speciesBacteroides_ovatus0.0680.003310.00574
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0680.003370.00582
speciesClostridium_sp_L2_50-0.0680.003380.00582
speciesVeillonella_atypica0.0670.003780.00649
speciesPorphyromonas_asaccharolytica0.0650.004690.00802
speciesLactobacillus_oris0.0650.004740.00808
speciesVeillonella_unclassified0.0650.004910.00834
speciesAlistipes_onderdonkii-0.0650.005220.00883
genusStreptococcus0.0640.005290.0089
speciesEnterobacteria_phage_HK5440.0640.00530.0089
speciesLactococcus_phage_jm2-0.0640.005340.00894
familyPropionibacteriaceae-0.0640.005960.00994
familyStreptococcaceae0.0630.006110.0101
speciesTuricibacter_unclassified-0.0630.006120.0101
speciesPropionibacterium_freudenreichii-0.0630.006370.0105
speciesAlistipes_finegoldii-0.0630.006390.0105
speciesOdoribacter_unclassified-0.0630.006590.0108
speciesBifidobacterium_catenulatum-0.0630.006790.0111
speciesLactobacillus_vaginalis0.060.009250.0151
genusTuricibacter-0.060.009630.0156
genusCatenibacterium-0.0590.01010.0163
speciesCatenibacterium_mitsuokai-0.0590.01010.0163
speciesLachnospiraceae_bacterium_1_1_57FAA0.0590.01030.0165
speciesErysipelotrichaceae_bacterium_3_1_530.0590.01050.0168
familySutterellaceae-0.0590.01110.0177
genusAnaerostipes-0.0590.01130.018
speciesLactobacillus_gasseri0.0580.01160.0184
speciesSubdoligranulum_sp_4_3_54A2FAA0.0580.0120.0189
speciesMethanobrevibacter_unclassified-0.0580.01210.019
genusSiphoviridae_noname-0.0580.01270.0199
speciesPeptostreptococcus_anaerobius0.0560.01540.0241
speciesErysipelotrichaceae_bacterium_6_1_450.0560.01630.0254
genusPhascolarctobacterium-0.0550.01640.0254
speciesPhascolarctobacterium_succinatutens-0.0550.01640.0254
speciesLeuconostoc_lactis0.0540.01860.0287
speciesBacteroides_coprocola0.0540.01920.0295
speciesLactobacillus_plantarum0.0540.01950.0299
genusPropionibacterium-0.0540.01970.0301
speciesVeillonella_dispar0.0530.02110.0321
speciesBacteroides_salanitronis-0.0530.02120.0322
genusBurkholderiales_noname0.0530.02150.0324
speciesBurkholderiales_bacterium_1_1_470.0530.02150.0324
speciesParabacteroides_sp_D13-0.0530.02190.0328
speciesBifidobacterium_animalis-0.0530.02190.0328
familyBurkholderiales_noname0.0520.02360.0353
speciesDesulfovibrio_piger-0.0520.02470.0368
speciesOdoribacter_laneus0.0520.02540.0377
speciesBifidobacterium_breve0.0510.02730.0404
orderPasteurellales0.0510.02880.0422
familyPasteurellaceae0.0510.02880.0422
genusParvimonas0.050.0290.0422
speciesParvimonas_unclassified0.050.0290.0422
speciesHaemophilus_parainfluenzae0.0510.0290.0422
speciesBlautia_hydrogenotrophica-0.050.02940.0427
familyPodoviridae0.050.02950.0427
speciesLactobacillus_fermentum0.050.0310.0447
genusHaemophilus0.0490.03240.0466
speciesRoseburia_unclassified-0.0490.03450.0495
genusAggregatibacter0.0480.03620.0518
speciesRoseburia_inulinivorans-0.0480.03810.0543
classBacteroidia0.0470.04340.0615
orderBacteroidales0.0470.04340.0615
phylumBacteroidetes0.0470.04350.0615
speciesAggregatibacter_segnis0.0450.05080.0716
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0450.05110.0718
speciesTuricibacter_sanguinis-0.0450.05180.0723
speciesBacteroides_finegoldii0.0450.05180.0723
classNegativicutes0.0450.05310.0737
orderSelenomonadales0.0450.05310.0737
speciesStreptococcus_parasanguinis-0.0450.05390.0746
speciesAlistipes_indistinctus-0.0450.05430.0749
speciesCollinsella_tanakaei0.0440.05960.082
speciesLactobacillus_acidophilus-0.0430.06340.087
speciesBacteroides_caccae0.0420.06670.0913
speciesOlsenella_unclassified-0.0420.06820.093
speciesLactobacillus_rhamnosus-0.0420.07190.0978
familyActinomycetaceae0.0410.07290.0989
speciesEubacterium_cylindroides-0.0410.07990.108
speciesRuminococcus_torques0.040.08220.111
orderBurkholderiales-0.040.08230.111
speciesEggerthella_sp_1_3_56FAA-0.040.08460.113
speciesBacteroides_clarus0.0390.08930.119
orderCoriobacteriales-0.0390.09020.12
familyCoriobacteriaceae-0.0390.09020.12
genusParasutterella0.0390.09050.12
speciesParasutterella_excrementihominis0.0390.09050.12
orderViruses_noname-0.0380.09690.128
genusDialister-0.0380.09940.131
genusLactococcus-0.0370.1050.137
speciesBacteroides_barnesiae-0.0370.1050.137
genusLachnospiraceae_noname0.0370.1080.141
speciesLactococcus_phage_bIL67-0.0360.1170.152
classErysipelotrichia0.0350.1270.163
orderErysipelotrichales0.0350.1270.163
familyErysipelotrichaceae0.0350.1270.163
genusActinomyces0.0350.1270.163
speciesOscillibacter_sp_KLE_1745-0.0350.1310.168
genusAcidaminococcaceae_unclassified-0.0350.1320.169
classBetaproteobacteria-0.0350.1340.171
speciesBacteroides_massiliensis0.0350.1350.172
speciesErysipelotrichaceae_bacterium_21_3-0.0340.1410.179
speciesBacteroides_sp_2_1_22-0.0340.1460.185
speciesCampylobacter_concisus0.0320.160.202
speciesKlebsiella_phage_KP36-0.0320.1620.204
genusOlsenella-0.0310.180.226
speciesBacteroides_vulgatus0.0310.1830.229
genusSlackia0.030.1960.245
speciesRuminococcus_bromii-0.0290.2070.258
genusLambdalikevirus0.0290.2110.262
speciesLactococcus_phage_936_sensu_lato-0.0280.2210.274
speciesStreptococcus_gordonii0.0280.230.284
speciesMegamonas_funiformis0.0280.2310.285
familyPorphyromonadaceae-0.0270.2390.293
speciesStreptococcus_mutans0.0270.2390.293
genusMyoviridae_noname0.0260.260.318
speciesParabacteroides_distasonis0.0250.2710.331
genusLeuconostoc0.0250.2750.335
genusCoriobacteriaceae_noname0.0250.2790.339
speciesPeptostreptococcaceae_noname_unclassified-0.0250.2820.341
genusSutterellaceae_unclassified-0.0240.2920.352
genusOxalobacter-0.0240.30.36
speciesOxalobacter_formigenes-0.0240.30.36
speciesBacteroides_sp_1_1_6-0.0240.3030.363
speciesDialister_invisus-0.0240.3060.366
familyMicrococcaceae0.0240.3070.366
genusRothia0.0230.3180.378
familyAcidaminococcaceae-0.0230.3210.381
genusButyricicoccus0.0230.3310.391
speciesButyricicoccus_pullicaecorum0.0230.3310.391
speciesOscillibacter_sp_KLE_1728-0.0220.3320.391
speciesStreptococcus_vestibularis0.0220.3350.393
genusStaphylococcus-0.0220.3380.396
genusTunalikevirus-0.0220.3430.401
familyOxalobacteraceae-0.0220.3460.403
speciesDorea_unclassified-0.0210.3530.41
speciesClostridium_spiroforme-0.0210.3650.423
speciesCoriobacteriaceae_bacterium_phI0.0210.3680.426
speciesEubacterium_sp_3_1_310.0210.3720.429
speciesHaemophilus_paraphrohaemolyticus0.020.3990.459
speciesBacteroides_faecis0.0190.4030.463
familyViruses_noname-0.0190.4120.471
genusViruses_noname-0.0190.4120.471
speciesAlistipes_sp_AP11-0.0190.4230.482
orderAeromonadales0.0180.4410.502
speciesHoldemania_sp_AP20.0180.4450.505
genusGordonibacter-0.0170.4520.51
speciesGordonibacter_pamelaeae-0.0170.4520.51
genusHoldemania0.0170.4650.524
speciesBifidobacterium_longum-0.0160.480.539
speciesRothia_mucilaginosa0.0160.4850.544
speciesBifidobacterium_bifidum0.0160.4890.547
speciesHoldemania_filiformis-0.0160.4960.553
speciesLactobacillus_casei_paracasei-0.0150.5030.56
genusMethanosphaera-0.0150.5110.566
speciesMethanosphaera_stadtmanae-0.0150.5110.566
orderActinomycetales0.0150.5160.569
speciesBacteroides_dorei-0.0150.5160.569
familyPrevotellaceae0.0150.5260.579
genusParabacteroides0.0140.5310.583
familySuccinivibrionaceae-0.0140.5380.589
speciesRuminococcus_sp_JC3040.0140.540.59
speciesLactobacillus_delbrueckii-0.0130.5610.612
genusActinobacillus0.0130.5710.62
speciesActinobacillus_unclassified0.0130.5710.62
speciesCollinsella_intestinalis0.0130.5740.621
speciesBacteroides_fluxus0.0130.5770.623
speciesDialister_succinatiphilus-0.0120.590.636
genusBifidobacterium-0.0120.6130.659
speciesBacteroides_sp_4_3_47FAA0.0120.6170.662
familyStaphylococcaceae-0.0110.6210.665
speciesAlistipes_unclassified0.0110.6410.685
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.010.6540.697
speciesCollinsella_unclassified0.010.6560.697
speciesHaemophilus_sputorum-0.010.6680.705
speciesStreptococcus_sanguinis0.010.6690.705
speciesBacteroides_eggerthii0.010.670.705
genusSuccinatimonas-0.010.6710.705
speciesSuccinatimonas_hippei-0.010.6710.705
speciesBacteroides_coprophilus0.010.6790.712
speciesLactobacillus_ruminis-0.0090.6920.724
speciesMitsuokella_multacida-0.0080.7290.761
orderBifidobacteriales-0.0070.7490.779
familyBifidobacteriaceae-0.0070.7490.779
speciesAcidaminococcus_unclassified-0.0070.7590.787
speciesStreptococcus_phage_Sfi210.0070.7710.798
speciesSlackia_piriformis0.0060.7910.817
genusDesulfovibrio-0.0060.7990.823
speciesHoldemania_unclassified-0.0050.8180.841
genusErysipelotrichaceae_noname-0.0050.8210.842
speciesClostridium_sp_KLE_17550.0040.8460.866
speciesParabacteroides_sp_20_3-0.0040.860.879
genusButyricimonas-0.0040.8690.883
speciesButyricimonas_synergistica-0.0040.8690.883
phylumActinobacteria-0.0040.8720.883
classActinobacteria-0.0040.8720.883
speciesDesulfovibrio_desulfuricans-0.0030.8850.894
orderPseudomonadales0.0030.9130.921
speciesRuminococcus_callidus0.0020.9310.937
speciesLactobacillus_reuteri-0.0010.9560.96
speciesBacteroides_cellulosilyticus-0.0010.980.982
speciesSutterella_parvirubra0.00.990.99
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.005854912619990.001363569473983.0892084459e-0612334.0417
Crohns diseaseSpain17660.01060615702350.008942269523130.000565078099392347711.5611
Type II diabetesChina1831850.02662820742320.009858186871980.00783014688251340011.2363
ObesityDenmark1691230.001928157310090.0005406557325910.0612047181575555218.2566
Rheumatoid arthritisChina127980.009104667657190.005238599602560.180980773481818227.2852
Type II diabetesSweden53920.002288186975630.004475931369670.3540575791611186140.1659
Liver cirrhosisChina1201140.02469275376170.005335969771240.408591683142320377.9435
Colorectal cancerAustria64350.03480630384820.01223773687470.7260992686932365480.0311
Ulcerative colitisSpain78660.002149848335320.008942269523130.9566662961842944197.1201
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382