MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-06 22:19:56 PST
Job id & description: 2084, traI_nrg
Query type: dna
Count queries & homologs: 1, 1
Min % identity & max e-value: 70%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
traI14729CompleteK01529COG0507ProteobacteriaShigella92.4386.4196.39
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEscherichia_coli0.6671.99e-2419.39e-239
genusEscherichia0.6552.25e-2295.31e-227
orderEnterobacteriales0.6014.26e-1845.03e-182
familyEnterobacteriaceae0.6014.26e-1845.03e-182
classGammaproteobacteria0.5552.99e-1512.82e-149
phylumProteobacteria0.4242.29e-821.8e-80
speciesEscherichia_unclassified0.3283.03e-482.04e-46
speciesRuminococcus_gnavus0.2959.29e-395.4e-37
speciesClostridium_nexile0.2941.03e-385.4e-37
genusKlebsiella0.2932.01e-389.49e-37
speciesClostridium_hathewayi0.2884.15e-371.78e-35
genusCoprobacillus0.2741.55e-336.06e-32
speciesClostridium_bolteae0.2741.67e-336.06e-32
speciesKlebsiella_pneumoniae0.2716.24e-332.1e-31
familyFusobacteriaceae0.2675.69e-321.79e-30
genusFusobacterium0.2634.66e-311.37e-29
phylumFusobacteria0.262.34e-305.81e-29
classFusobacteriia0.262.34e-305.81e-29
orderFusobacteriales0.262.34e-305.81e-29
speciesCoprobacillus_unclassified0.2512.65e-286.25e-27
speciesBacteroides_fragilis0.2381.88e-254.23e-24
speciesClostridium_symbiosum0.2315.45e-241.17e-22
speciesEubacterium_siraeum-0.2264.64e-239.52e-22
speciesClostridium_ramosum0.2241.16e-222.28e-21
genusPantoea0.2223.03e-225.5e-21
speciesPantoea_unclassified0.2223.03e-225.5e-21
genusFlavonifractor0.2171.85e-213.12e-20
speciesFlavonifractor_plautii0.2171.85e-213.12e-20
genusEnterobacter0.2164.3e-217e-20
familyClostridiaceae0.2149.58e-211.51e-19
speciesSubdoligranulum_unclassified-0.2131.33e-202.03e-19
genusClostridium0.214.14e-206.11e-19
speciesEnterobacter_cloacae0.2062.26e-193.23e-18
speciesClostridiales_bacterium_1_7_47FAA0.2062.53e-193.51e-18
genusCoprococcus-0.2045.37e-197.24e-18
genusSubdoligranulum-0.2045.56e-197.29e-18
genusCitrobacter0.2036.3e-198.04e-18
genusEubacterium-0.1942.68e-173.33e-16
familyEubacteriaceae-0.1942.83e-173.43e-16
speciesCitrobacter_freundii0.1943.02e-173.56e-16
genusMegasphaera0.1933.41e-173.93e-16
speciesEubacterium_ramulus-0.1926.05e-176.8e-16
speciesEggerthella_unclassified0.1917.38e-178.1e-16
genusButyrivibrio-0.1873.34e-163.58e-15
speciesCitrobacter_unclassified0.1873.41e-163.58e-15
speciesClostridium_citroniae0.1857.49e-167.69e-15
genusEggerthella0.1841.03e-151.03e-14
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1771.25e-141.23e-13
speciesFusobacterium_ulcerans0.1761.81e-141.74e-13
speciesEubacterium_rectale-0.1719.31e-148.79e-13
speciesLachnospiraceae_bacterium_6_1_63FAA0.1719.52e-148.81e-13
speciesLachnospiraceae_bacterium_3_1_46FAA-0.171.21e-131.1e-12
phylumSynergistetes0.1682.59e-132.18e-12
classSynergistia0.1682.59e-132.18e-12
orderSynergistales0.1682.59e-132.18e-12
familySynergistaceae0.1682.59e-132.18e-12
speciesAnaerotruncus_unclassified-0.1673.71e-133.07e-12
genusPyramidobacter0.1657.02e-135.62e-12
speciesPyramidobacter_piscolens0.1657.02e-135.62e-12
speciesBifidobacterium_adolescentis-0.1621.82e-121.43e-11
familyRuminococcaceae-0.163.49e-122.7e-11
genusPseudoflavonifractor-0.1594.39e-123.29e-11
speciesPseudoflavonifractor_capillosus-0.1594.39e-123.29e-11
classClostridia-0.1578.93e-126.48e-11
orderClostridiales-0.1578.93e-126.48e-11
speciesCoprococcus_sp_ART55_1-0.1579.2e-126.58e-11
speciesFusobacterium_nucleatum0.1579.68e-126.82e-11
speciesDorea_longicatena-0.1551.63e-111.13e-10
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1542.31e-111.58e-10
speciesCoprococcus_comes-0.1542.44e-111.65e-10
genusBarnesiella-0.1533.33e-112.18e-10
speciesBarnesiella_intestinihominis-0.1533.33e-112.18e-10
speciesEubacterium_hallii-0.1523.48e-112.25e-10
speciesFusobacterium_varium0.1524.38e-112.79e-10
speciesBifidobacterium_pseudocatenulatum0.1515.78e-113.64e-10
speciesLactobacillus_salivarius0.1515.89e-113.66e-10
genusWeissella0.1499.36e-115.74e-10
speciesKlebsiella_unclassified0.1481.11e-106.72e-10
speciesCoprococcus_catus-0.1481.3e-107.77e-10
speciesRoseburia_hominis-0.1471.93e-101.14e-09
familyClostridiales_noname0.1462.04e-101.19e-09
genusRuminococcaceae_noname-0.1462.56e-101.46e-09
speciesRuminococcaceae_bacterium_D16-0.1462.56e-101.46e-09
speciesLactobacillus_mucosae0.1452.61e-101.47e-09
genusEnterococcus0.1443.46e-101.92e-09
speciesMegasphaera_micronuciformis0.1443.8e-102.07e-09
familyEnterococcaceae0.1443.82e-102.07e-09
speciesAlistipes_senegalensis-0.1434.87e-102.61e-09
speciesStreptococcus_anginosus0.1426.04e-103.19e-09
speciesLachnospiraceae_bacterium_2_1_58FAA0.1426.09e-103.19e-09
genusDorea-0.1419.51e-104.93e-09
speciesParaprevotella_unclassified-0.141.05e-095.39e-09
genusParaprevotella-0.141.19e-096.04e-09
speciesStreptococcus_thermophilus-0.1391.46e-097.33e-09
speciesSutterella_wadsworthensis-0.1391.52e-097.55e-09
familyBacteroidales_noname-0.1391.72e-098.28e-09
genusBacteroidales_noname-0.1391.72e-098.28e-09
speciesBacteroidales_bacterium_ph8-0.1391.72e-098.28e-09
speciesMegasphaera_unclassified0.1382.22e-091.06e-08
genusClostridiales_noname0.1382.24e-091.06e-08
genusSutterella-0.1382.27e-091.06e-08
speciesButyrivibrio_unclassified-0.1354.54e-092.1e-08
speciesBacteroides_nordii0.1346.47e-092.96e-08
speciesBacteroides_thetaiotaomicron0.1338.15e-093.7e-08
speciesAnaerostipes_unclassified0.1329.25e-094.16e-08
speciesClostridium_clostridioforme0.1311.42e-086.32e-08
speciesWeissella_confusa0.131.51e-086.64e-08
speciesClostridium_leptum-0.131.52e-086.64e-08
familyLeuconostocaceae0.131.63e-087.06e-08
speciesFusobacterium_mortiferum0.131.74e-087.47e-08
speciesParaprevotella_xylaniphila-0.1292.17e-089.23e-08
genusCoprobacter-0.1292.31e-089.65e-08
speciesCoprobacter_fastidiosus-0.1292.31e-089.65e-08
speciesMitsuokella_unclassified-0.1292.44e-081.01e-07
speciesC2likevirus_unclassified-0.1282.79e-081.15e-07
speciesLactococcus_garvieae0.1282.95e-081.2e-07
speciesClostridium_perfringens0.1283.12e-081.25e-07
speciesEnterobacter_aerogenes0.1283.13e-081.25e-07
genusC2likevirus-0.1273.83e-081.52e-07
genusBlautia0.1274.02e-081.58e-07
speciesKlebsiella_oxytoca0.1264.29e-081.67e-07
speciesAlistipes_putredinis-0.1264.32e-081.67e-07
speciesCollinsella_aerofaciens-0.1265.02e-081.93e-07
speciesVeillonella_parvula0.1255.32e-082.03e-07
speciesParaprevotella_clara-0.1255.64e-082.13e-07
speciesAnaerostipes_hadrus-0.1256.17e-082.31e-07
genusSolobacterium0.1256.4e-082.36e-07
speciesSolobacterium_moorei0.1256.4e-082.36e-07
speciesRuminococcus_lactaris-0.1239.53e-083.49e-07
speciesStreptococcus_mitis_oralis_pneumoniae0.1221.25e-074.54e-07
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1221.34e-074.83e-07
orderLactobacillales0.1211.6e-075.72e-07
familySiphoviridae-0.1211.7e-076.03e-07
classBacilli0.121.93e-076.8e-07
speciesMegamonas_unclassified0.122.03e-077.1e-07
genusMegamonas0.122.08e-077.22e-07
speciesStreptococcus_infantarius0.1192.34e-078.06e-07
phylumFirmicutes-0.1192.47e-078.45e-07
genusMitsuokella-0.1182.8e-079.51e-07
speciesBilophila_unclassified0.1183.07e-071.04e-06
genusBilophila0.1183.36e-071.12e-06
speciesPrevotella_bivia0.1183.4e-071.13e-06
speciesRuminococcus_sp_5_1_39BFAA-0.1174.09e-071.35e-06
speciesBacteroides_stercoris0.1156.09e-072e-06
familyLactobacillaceae0.1156.49e-072.11e-06
familyBacteroidaceae0.1147.09e-072.28e-06
genusBacteroides0.1147.09e-072.28e-06
speciesWeissella_cibaria0.1147.66e-072.44e-06
speciesAcidaminococcus_intestini0.1148.37e-072.65e-06
genusPeptostreptococcus0.1148.45e-072.66e-06
phylumVerrucomicrobia-0.1139.41e-072.84e-06
classVerrucomicrobiae-0.1139.41e-072.84e-06
orderVerrucomicrobiales-0.1139.41e-072.84e-06
familyVerrucomicrobiaceae-0.1139.41e-072.84e-06
genusAkkermansia-0.1139.41e-072.84e-06
speciesAkkermansia_muciniphila-0.1139.41e-072.84e-06
genusLactobacillus0.1139.45e-072.84e-06
speciesBacteroides_pectinophilus-0.1121.08e-063.23e-06
speciesBacteroides_uniformis-0.1121.19e-063.53e-06
speciesEnterococcus_faecium0.1121.21e-063.57e-06
genusMethanobrevibacter-0.1121.24e-063.64e-06
familyPeptostreptococcaceae0.1121.28e-063.73e-06
speciesAlistipes_shahii-0.1121.32e-063.82e-06
classMethanobacteria-0.111.77e-065e-06
orderMethanobacteriales-0.111.77e-065e-06
familyMethanobacteriaceae-0.111.77e-065e-06
speciesMethanobrevibacter_smithii-0.111.77e-065e-06
classDeltaproteobacteria0.1092.19e-066.08e-06
orderDesulfovibrionales0.1092.19e-066.08e-06
familyDesulfovibrionaceae0.1092.19e-066.08e-06
speciesButyrivibrio_crossotus-0.1092.54e-067.01e-06
genusCollinsella-0.1082.66e-067.28e-06
speciesPrevotella_stercorea0.1082.67e-067.28e-06
genusVeillonella0.1082.8e-067.6e-06
phylumEuryarchaeota-0.1073.31e-068.93e-06
familyBacillales_noname0.1073.53e-069.41e-06
genusGemella0.1073.53e-069.41e-06
speciesEggerthella_lenta0.1064.05e-061.07e-05
genusPrevotella0.1064.49e-061.18e-05
speciesCoprococcus_eutactus-0.1055.22e-061.37e-05
speciesEubacterium_biforme-0.1055.27e-061.37e-05
speciesEnterococcus_faecalis0.1055.28e-061.37e-05
speciesDorea_formicigenerans-0.1046.75e-061.74e-05
genusMorganella0.1037.84e-062e-05
speciesMorganella_morganii0.1037.84e-062e-05
speciesEubacterium_limosum0.1038.24e-062.09e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.1038.83e-062.23e-05
speciesAnaerotruncus_colihominis0.1029.12e-062.29e-05
speciesStreptococcus_lutetiensis0.1029.97e-062.49e-05
speciesErysipelotrichaceae_bacterium_2_2_44A0.1021.06e-052.63e-05
genusFaecalibacterium-0.1021.07e-052.63e-05
speciesFaecalibacterium_prausnitzii-0.1021.07e-052.63e-05
speciesClostridium_bartlettii0.1011.11e-052.71e-05
speciesPrevotella_buccae0.1011.14e-052.77e-05
speciesPorphyromonas_uenonis0.1011.17e-052.83e-05
speciesOdoribacter_splanchnicus-0.1011.23e-052.96e-05
genusPeptoniphilus0.1011.32e-053.16e-05
genusOdoribacter-0.11.41e-053.36e-05
speciesLachnospiraceae_bacterium_2_1_46FAA0.11.51e-053.58e-05
familyRikenellaceae-0.0982.08e-054.88e-05
genusAlistipes-0.0982.08e-054.88e-05
speciesLactobacillus_amylovorus0.0982.39e-055.58e-05
speciesMegamonas_rupellensis0.0963.41e-057.93e-05
speciesAlistipes_sp_HGB5-0.0954.1e-059.49e-05
genusPeptostreptococcaceae_noname0.0944.59e-050.000106
familyClostridiales_Family_XI_Incertae_Sedis0.0935.75e-050.000132
speciesStreptococcus_salivarius0.0917.92e-050.000181
genusAdlercreutzia-0.0918.82e-050.000199
speciesAdlercreutzia_equolifaciens-0.0918.82e-050.000199
speciesClostridium_asparagiforme0.098.89e-050.0002
speciesStreptococcus_pasteurianus0.099.03e-050.000202
speciesBifidobacterium_dentium0.099.24e-050.000206
speciesEubacterium_eligens-0.099.4e-050.000208
speciesPeptostreptococcus_stomatis0.099.89e-050.000218
classEpsilonproteobacteria0.099.98e-050.000218
orderCampylobacterales0.099.98e-050.000218
speciesLachnospiraceae_bacterium_1_4_56FAA0.090.0001050.000228
familyMyoviridae0.0890.0001060.00023
speciesLactobacillus_crispatus0.0890.0001190.000256
speciesBlautia_producta0.0890.0001210.00026
orderBacillales0.0880.0001340.000286
speciesRoseburia_intestinalis-0.0880.0001380.000293
speciesRuminococcus_champanellensis-0.0880.0001390.000294
familyVeillonellaceae0.0870.0001520.00032
speciesMegamonas_hypermegale0.0870.0001570.000329
familyCampylobacteraceae0.0870.0001670.000347
speciesCoprobacillus_sp_D60.0870.0001670.000347
speciesBacteroides_intestinalis0.0870.0001720.000356
speciesCoprobacillus_sp_29_10.0870.0001750.000361
genusCampylobacter0.0860.0001930.000396
speciesBacteroides_plebeius0.0850.000220.00045
speciesBacteroides_salyersiae0.0840.0002640.000537
speciesGemella_morbillorum0.0840.0002770.000559
speciesEubacterium_dolichum0.0840.0002770.000559
speciesBilophila_wadsworthia0.0840.0002810.000564
speciesKlebsiella_sp_MS_92_30.0830.0003030.000606
speciesOscillibacter_unclassified-0.0830.000320.000637
genusPorphyromonas0.0830.0003270.000648
speciesStreptococcus_australis0.0830.0003280.000648
speciesRuminococcus_obeum-0.0820.0003870.00076
speciesLactobacillus_sanfranciscensis0.0820.0003880.00076
genusClostridiaceae_noname0.0810.0004190.000814
speciesClostridiaceae_bacterium_JC1180.0810.0004190.000814
speciesAcidaminococcus_fermentans0.0810.0004480.000867
speciesMegasphaera_elsdenii0.080.0005080.000979
genusRuminococcus-0.080.0005110.00098
speciesParabacteroides_merdae-0.080.0005140.000982
orderCaudovirales-0.080.0005780.0011
phylumViruses_noname-0.0790.0005840.0011
classViruses_noname-0.0790.0005840.0011
genusAnaerotruncus-0.0790.0006060.00114
familyOscillospiraceae-0.0790.000640.00119
genusOscillibacter-0.0790.000640.00119
speciesClostridium_sp_ATCC_BAA_4420.0780.0007920.00147
speciesEnterobacteria_phage_HK5440.0780.0007960.00147
speciesPropionibacterium_freudenreichii-0.0760.0009780.0018
familyStreptococcaceae0.0760.001030.00189
speciesVeillonella_unclassified0.0760.001040.0019
genusAcidaminococcus0.0760.001080.00197
speciesParabacteroides_goldsteinii0.0750.00110.002
speciesBacteroides_xylanisolvens0.0750.001160.0021
genusAggregatibacter0.0750.001220.0022
speciesBacteroides_oleiciplenus0.0750.001230.00221
speciesAggregatibacter_segnis0.0740.001390.00249
speciesMethanobrevibacter_unclassified-0.0740.001430.00255
speciesHaemophilus_parainfluenzae0.0730.001570.00279
familyLachnospiraceae-0.0730.001630.00288
genusStreptococcus0.0730.001660.00292
speciesParabacteroides_unclassified0.0730.001680.00295
orderPasteurellales0.0720.001850.00322
familyPasteurellaceae0.0720.001850.00322
speciesClostridium_sp_L2_50-0.0720.00190.0033
speciesLactobacillus_oris0.0720.001920.00332
familyPropionibacteriaceae-0.0720.001940.00334
speciesVeillonella_dispar0.0720.001970.00338
speciesLeuconostoc_lactis0.0710.001990.0034
genusHaemophilus0.0710.00210.00358
speciesEubacterium_ventriosum-0.0710.002150.00365
speciesBifidobacterium_angulatum-0.0710.00220.00372
genusRoseburia-0.0690.00270.00455
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0690.002770.00465
speciesOdoribacter_unclassified-0.0680.003480.00582
genusCatenibacterium-0.0670.003780.00628
speciesCatenibacterium_mitsuokai-0.0670.003780.00628
speciesSubdoligranulum_sp_4_3_54A2FAA0.0660.004390.00727
speciesLactobacillus_fermentum0.0660.004420.00729
speciesAlistipes_onderdonkii-0.0660.004540.00747
genusPhascolarctobacterium-0.0650.005060.00826
speciesPhascolarctobacterium_succinatutens-0.0650.005060.00826
speciesVeillonella_atypica0.0640.005460.00889
speciesBacteroides_sp_3_1_190.0640.00570.00925
speciesBifidobacterium_animalis-0.0640.005750.00929
genusBurkholderiales_noname0.0630.006240.01
speciesBurkholderiales_bacterium_1_1_470.0630.006240.01
familySutterellaceae-0.0630.006550.0105
familyBurkholderiales_noname0.0620.007010.0112
speciesParabacteroides_sp_D13-0.0620.007430.0118
speciesLactobacillus_vaginalis0.0610.008160.0129
genusPropionibacterium-0.0610.008240.013
speciesLactobacillus_gasseri0.0610.00830.0131
speciesPrevotella_copri0.0590.01010.0158
familyActinomycetaceae0.0590.01060.0166
speciesBacteroides_coprocola0.0580.01190.0185
speciesCampylobacter_concisus0.0570.0130.0202
speciesRoseburia_unclassified-0.0570.01380.0214
genusProteus0.0570.0140.0216
speciesParabacteroides_johnsonii0.0570.01420.0217
speciesAlistipes_finegoldii-0.0570.01420.0217
speciesBacteroides_ovatus0.0570.01420.0217
speciesPorphyromonas_asaccharolytica0.0560.01490.0227
speciesDesulfovibrio_piger-0.0560.01550.0235
speciesLachnospiraceae_bacterium_1_1_57FAA0.0560.01620.0245
speciesBlautia_hydrogenotrophica-0.0550.01650.0249
speciesProteus_mirabilis0.0550.01680.0253
speciesLactococcus_phage_P680-0.0550.01710.0256
classNegativicutes0.0550.01820.0271
orderSelenomonadales0.0550.01820.0271
speciesBacteroides_salanitronis-0.0550.01830.0271
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0550.01830.0271
speciesErysipelotrichaceae_bacterium_3_1_530.0540.01870.0276
speciesBifidobacterium_catenulatum-0.0540.01890.0278
genusActinomyces0.0540.01950.0286
speciesLactobacillus_rhamnosus-0.0530.02080.0304
speciesPeptostreptococcus_anaerobius0.0530.02170.0316
speciesErysipelotrichaceae_bacterium_6_1_450.0520.02380.0346
speciesCollinsella_tanakaei0.0520.02420.035
speciesTuricibacter_unclassified-0.0520.02510.0362
speciesLactococcus_phage_jm2-0.0520.02570.037
speciesLactococcus_lactis-0.050.03010.0432
genusParasutterella0.050.03040.0432
speciesBifidobacterium_breve0.050.03040.0432
speciesParasutterella_excrementihominis0.050.03040.0432
speciesEggerthella_sp_1_3_56FAA-0.050.03170.0449
genusTuricibacter-0.0490.03270.0462
genusAnaerostipes-0.0490.03290.0464
speciesKlebsiella_phage_KP36-0.0490.03440.0483
speciesStreptococcus_gordonii0.0490.03450.0483
speciesAlistipes_indistinctus-0.0470.04080.057
speciesBacteroides_caccae0.0470.04220.0588
speciesOdoribacter_laneus0.0460.04680.065
genusLeuconostoc0.0450.04940.0684
speciesParvimonas_unclassified0.0450.0540.0744
genusParvimonas0.0450.05410.0744
speciesRoseburia_inulinivorans-0.0440.0560.0768
speciesLactococcus_phage_phi7-0.0440.0580.0794
speciesOlsenella_unclassified-0.0430.06010.082
speciesPeptostreptococcaceae_noname_unclassified-0.0430.06060.0824
speciesBacteroides_clarus0.0430.06370.0864
orderBurkholderiales-0.0430.06550.0886
speciesHaemophilus_paraphrohaemolyticus0.0420.07240.0976
orderCoriobacteriales-0.0410.07440.0998
familyCoriobacteriaceae-0.0410.07440.0998
speciesBacteroides_vulgatus0.040.080.107
speciesLactobacillus_plantarum0.040.0820.109
speciesEubacterium_cylindroides-0.040.08440.112
speciesLactococcus_phage_bIL67-0.0390.09470.126
genusTunalikevirus-0.0380.09680.128
genusSiphoviridae_noname-0.0380.09870.13
speciesParabacteroides_distasonis0.0380.1010.133
speciesStreptococcus_vestibularis0.0380.1040.136
genusMyoviridae_noname0.0370.1050.137
classBetaproteobacteria-0.0370.1080.141
speciesStreptococcus_mutans0.0360.1150.15
familyMicrococcaceae0.0360.1160.15
speciesRothia_mucilaginosa0.0360.1170.151
genusRothia0.0360.1220.157
classErysipelotrichia0.0360.1240.159
orderErysipelotrichales0.0360.1240.159
familyErysipelotrichaceae0.0360.1240.159
genusOlsenella-0.0340.1370.175
speciesStreptococcus_sanguinis0.0340.140.178
genusActinobacillus0.0340.1470.186
speciesActinobacillus_unclassified0.0340.1470.186
speciesDorea_unclassified-0.0330.150.189
orderActinomycetales0.0330.1520.191
speciesStreptococcus_parasanguinis-0.0320.1660.208
speciesOscillibacter_sp_KLE_1728-0.030.1880.235
familyAcidaminococcaceae-0.030.1890.236
genusDialister-0.030.1910.237
speciesTuricibacter_sanguinis-0.030.1910.237
phylumBacteroidetes0.030.1920.237
classBacteroidia0.030.1920.237
orderBacteroidales0.030.1920.237
speciesRuminococcus_bromii-0.030.1950.24
familyPorphyromonadaceae-0.030.1970.242
speciesBacteroides_finegoldii0.030.1980.242
genusSutterellaceae_unclassified-0.030.1990.243
speciesBacteroides_faecis0.0290.2060.251
genusAcidaminococcaceae_unclassified-0.0280.2210.268
genusCoriobacteriaceae_noname0.0280.2230.269
speciesBacteroides_massiliensis0.0280.2230.269
genusHoldemania0.0270.2360.284
familyPodoviridae0.0270.2370.285
orderViruses_noname-0.0270.250.299
speciesOscillibacter_sp_KLE_1745-0.0270.2520.301
genusMethanosphaera-0.0260.2550.302
speciesLactobacillus_acidophilus-0.0260.2550.302
speciesMethanosphaera_stadtmanae-0.0260.2550.302
speciesBacteroides_sp_1_1_6-0.0240.290.343
speciesBacteroides_sp_2_1_22-0.0240.2930.346
speciesBacteroides_barnesiae-0.0240.2990.352
speciesCoriobacteriaceae_bacterium_phI0.0240.3020.355
orderPseudomonadales0.0240.3070.36
speciesHoldemania_sp_AP20.0230.310.362
speciesRuminococcus_sp_JC3040.0230.3180.371
genusLachnospiraceae_noname0.0220.3370.392
speciesCollinsella_unclassified0.0220.3390.393
speciesRuminococcus_torques0.0220.340.393
genusParabacteroides0.0220.3440.397
speciesBacteroides_fluxus0.0210.3720.428
orderAeromonadales0.0210.3750.431
familySuccinivibrionaceae-0.020.3810.435
speciesMegamonas_funiformis0.020.3810.435
speciesHaemophilus_sputorum0.020.3920.447
genusGordonibacter-0.020.3940.447
speciesGordonibacter_pamelaeae-0.020.3940.447
genusButyricicoccus0.020.3980.449
speciesButyricicoccus_pullicaecorum0.020.3980.449
speciesBacteroides_dorei-0.0190.4070.458
speciesCollinsella_intestinalis0.0190.4150.466
genusOxalobacter-0.0190.4210.471
speciesOxalobacter_formigenes-0.0190.4210.471
speciesDialister_invisus-0.0180.4380.489
speciesBifidobacterium_bifidum0.0180.4410.491
speciesSlackia_piriformis-0.0170.4550.505
familyOxalobacteraceae-0.0170.4680.519
genusSuccinatimonas-0.0160.4760.525
speciesSuccinatimonas_hippei-0.0160.4760.525
genusStaphylococcus-0.0160.4980.548
speciesLactobacillus_casei_paracasei-0.0160.4990.548
speciesStreptococcus_phage_Sfi210.0150.5150.564
speciesDesulfovibrio_desulfuricans0.0150.5250.573
speciesLactococcus_phage_936_sensu_lato-0.0150.5260.573
genusLambdalikevirus0.0130.5670.617
genusSlackia0.0120.6060.658
familyViruses_noname-0.0120.610.659
genusViruses_noname-0.0120.610.659
speciesHoldemania_unclassified-0.0120.6140.662
speciesErysipelotrichaceae_bacterium_21_3-0.0110.6240.671
speciesBifidobacterium_longum-0.0110.6270.673
speciesMitsuokella_multacida-0.010.650.696
genusBifidobacterium-0.0090.6890.735
speciesBacteroides_eggerthii0.0090.690.735
speciesLactobacillus_ruminis-0.0090.6920.736
speciesAcidaminococcus_unclassified-0.0090.6960.738
speciesDialister_succinatiphilus-0.0080.7250.767
speciesParabacteroides_sp_20_3-0.0080.7320.773
genusDesulfovibrio0.0070.7460.786
speciesSutterella_parvirubra0.0070.7580.797
speciesLactobacillus_reuteri0.0070.7630.8
familyStaphylococcaceae-0.0060.8110.849
speciesClostridium_spiroforme-0.0050.8140.849
speciesBacteroides_sp_4_3_47FAA-0.0050.8170.849
orderBifidobacteriales-0.0050.8190.849
familyBifidobacteriaceae-0.0050.8190.849
genusLactococcus-0.0050.820.849
speciesBacteroides_cellulosilyticus0.0050.8240.851
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0050.8350.861
speciesLactobacillus_delbrueckii-0.0040.8590.881
phylumActinobacteria-0.0040.860.881
classActinobacteria-0.0040.860.881
speciesClostridium_sp_KLE_17550.0040.8640.883
genusErysipelotrichaceae_noname-0.0030.8840.899
speciesAlistipes_unclassified0.0030.8840.899
speciesAlistipes_sp_AP11-0.0030.8980.911
familyPrevotellaceae0.0030.8990.911
speciesBacteroides_coprophilus-0.0020.9250.935
speciesEubacterium_sp_3_1_310.0010.9620.97
genusButyricimonas0.0010.9760.98
speciesButyricimonas_synergistica0.0010.9760.98
speciesHoldemania_filiformis0.00.9980.998
speciesRuminococcus_callidus0.00.9980.998
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.0009720068352070.0002524611658843.71620695272e-106992.29128
Crohns diseaseSpain17660.003955160786260.001497363186018.10047351707e-0517995.98171
Type II diabetesChina1831850.004712094037120.001855699908130.0101864098038372912.3236
Liver cirrhosisChina1201140.005336652858070.0007764626536280.05734271042091488149.9882
Rheumatoid arthritisChina127980.001667171958890.0008563225434350.0819289878202464415.4867
ObesityDenmark1691230.0003422921922980.0001211994042170.465373070831852560.9155
Type II diabetesSweden53920.0003262548606160.0006578619465170.5152720820051651055.9092
Ulcerative colitisSpain78660.0002915550471960.001497363186010.5537506394862046667.5134
Colorectal cancerAustria64350.007194162536670.003718813502130.7493818202272410981.5706
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382