MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-08-06 22:24:11 PST
Job id & description: 2085, traX_nrg
Query type: dna
Count queries & homologs: 1, 12
Min % identity & max e-value: 70%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
traX3695104CompleteunknownNOG148857ProteobacteriaEscherichia100.0100.099.87
traX2249713CompleteunknownNOG148857ProteobacteriaEscherichia100.072.6994.92
traX3692707CompleteunknownNOG148857ProteobacteriaEscherichia99.7399.7394.9
traX3744033CompleteunknownNOG148857ProteobacteriaEscherichia97.7298.5294.52
traX3515040CompleteunknownNOG148857ProteobacteriaEscherichia99.7395.8893.69
traX3688309CompleteunknownNOG148857ProteobacteriaEscherichia100.0100.092.77
traX3730075CompleteunknownNOG148857ProteobacteriaEscherichia97.7298.5293.29
traX3543486CompleteunknownNOG148857ProteobacteriaEscherichia97.5994.5593.28
traX3703413CompleteunknownNOG148857ProteobacteriaEscherichia99.7399.7391.95
traX2402133Lack 5'-endunknownNOG148857ProteobacteriaEscherichia100.075.2389.3
traX3763266CompleteunknownNOG148857ProteobacteriaEscherichia89.5690.6591.34
traX3782154CompleteunknownNOG148857ProteobacteriaEscherichia89.6991.1676.68
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesEscherichia_coli0.6092.2e-1901.04e-187
genusEscherichia0.6024.75e-1851.12e-182
orderEnterobacteriales0.554.74e-1485.59e-146
familyEnterobacteriaceae0.554.74e-1485.59e-146
classGammaproteobacteria0.5023.59e-1203.39e-118
phylumProteobacteria0.3942.56e-702.01e-68
speciesEscherichia_unclassified0.3261.73e-471.17e-45
genusKlebsiella0.2594e-302.36e-28
genusCoprobacillus0.2571.39e-297.29e-28
speciesRuminococcus_gnavus0.2512.97e-281.4e-26
speciesClostridium_nexile0.2499.93e-284.26e-26
speciesKlebsiella_pneumoniae0.245.23e-262.06e-24
speciesClostridium_hathewayi0.247.13e-262.59e-24
genusPantoea0.2372.33e-257.33e-24
speciesPantoea_unclassified0.2372.33e-257.33e-24
speciesClostridium_bolteae0.2341.14e-243.36e-23
speciesCoprobacillus_unclassified0.2331.68e-244.66e-23
familyFusobacteriaceae0.225.54e-221.45e-20
speciesClostridium_ramosum0.2198.73e-222.17e-20
genusFusobacterium0.2147.9e-211.86e-19
phylumFusobacteria0.2121.58e-203.24e-19
classFusobacteriia0.2121.58e-203.24e-19
orderFusobacteriales0.2121.58e-203.24e-19
genusCitrobacter0.2081.01e-191.99e-18
familyClostridiaceae0.2021.3e-182.45e-17
speciesCitrobacter_freundii0.2011.52e-182.76e-17
genusClostridium0.1978.97e-181.57e-16
genusEnterobacter0.1942.49e-174.2e-16
speciesEnterobacter_cloacae0.1933.78e-176.15e-16
speciesCitrobacter_unclassified0.1917.26e-171.14e-15
speciesClostridium_symbiosum0.1919.49e-171.44e-15
speciesBacteroides_fragilis0.1882.84e-164.19e-15
speciesClostridiales_bacterium_1_7_47FAA0.1796.9e-159.87e-14
genusFlavonifractor0.1771.26e-141.7e-13
speciesFlavonifractor_plautii0.1771.26e-141.7e-13
speciesEubacterium_siraeum-0.1762e-142.62e-13
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1743.68e-144.69e-13
speciesEggerthella_unclassified0.171.27e-131.58e-12
genusEnterococcus0.1682.69e-133.26e-12
familyEnterococcaceae0.1673.52e-134.15e-12
genusEubacterium-0.1656.63e-137.63e-12
familyEubacteriaceae-0.1657.13e-138.01e-12
speciesLachnospiraceae_bacterium_6_1_63FAA0.1648.52e-139.35e-12
genusEggerthella0.1649.16e-139.83e-12
speciesFusobacterium_ulcerans0.1621.99e-122.05e-11
speciesAnaerostipes_unclassified0.1622e-122.05e-11
genusMegasphaera0.163.54e-123.56e-11
speciesSubdoligranulum_unclassified-0.1594.24e-124.17e-11
speciesKlebsiella_unclassified0.1577.73e-127.45e-11
genusCoprococcus-0.1561.26e-111.19e-10
genusSubdoligranulum-0.1498.87e-118.21e-10
genusButyrivibrio-0.1419.33e-108.47e-09
familyClostridiales_noname0.1419.71e-108.65e-09
phylumSynergistetes0.141.3e-091.08e-08
classSynergistia0.141.3e-091.08e-08
orderSynergistales0.141.3e-091.08e-08
familySynergistaceae0.141.3e-091.08e-08
genusBlautia0.1391.6e-091.28e-08
speciesClostridium_citroniae0.1391.6e-091.28e-08
genusPyramidobacter0.1354.06e-093.14e-08
speciesPyramidobacter_piscolens0.1354.06e-093.14e-08
genusWeissella0.1345.43e-094.13e-08
speciesEubacterium_ramulus-0.1346.03e-094.52e-08
familyRuminococcaceae-0.1346.61e-094.87e-08
speciesKlebsiella_oxytoca0.1338.13e-095.9e-08
speciesMegasphaera_micronuciformis0.1338.57e-096.13e-08
speciesEubacterium_rectale-0.1321.13e-087.96e-08
speciesFusobacterium_nucleatum0.1282.47e-081.71e-07
speciesCoprococcus_sp_ART55_1-0.1282.82e-081.93e-07
speciesEnterococcus_faecium0.1273.34e-082.25e-07
speciesLactobacillus_salivarius0.1273.95e-082.63e-07
genusSutterella-0.1264.72e-083.02e-07
classClostridia-0.1264.73e-083.02e-07
orderClostridiales-0.1264.73e-083.02e-07
speciesClostridium_perfringens0.1265.18e-083.26e-07
genusClostridiales_noname0.1255.44e-083.38e-07
speciesRoseburia_hominis-0.1247.47e-084.58e-07
speciesLachnospiraceae_bacterium_2_1_58FAA0.1238.64e-085.23e-07
speciesAlistipes_senegalensis-0.1239.17e-085.48e-07
speciesClostridium_clostridioforme0.1239.81e-085.79e-07
speciesEnterococcus_faecalis0.1231.06e-076.18e-07
genusSolobacterium0.1221.18e-076.71e-07
speciesSolobacterium_moorei0.1221.18e-076.71e-07
speciesSutterella_wadsworthensis-0.1221.23e-076.91e-07
genusFaecalibacterium-0.121.81e-079.93e-07
speciesFaecalibacterium_prausnitzii-0.121.81e-079.93e-07
speciesErysipelotrichaceae_bacterium_2_2_44A0.122.05e-071.11e-06
speciesFusobacterium_varium0.1192.45e-071.31e-06
genusMorganella0.1183.32e-071.74e-06
speciesMorganella_morganii0.1183.32e-071.74e-06
speciesWeissella_confusa0.1183.39e-071.76e-06
speciesBlautia_producta0.1173.53e-071.81e-06
familyBacteroidales_noname-0.1173.98e-071.98e-06
genusBacteroidales_noname-0.1173.98e-071.98e-06
speciesBacteroidales_bacterium_ph8-0.1173.98e-071.98e-06
familyLeuconostocaceae0.1174.28e-072.1e-06
speciesBacteroides_uniformis-0.1164.49e-072.18e-06
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1155.98e-072.88e-06
speciesLactococcus_garvieae0.1156.2e-072.96e-06
speciesAnaerotruncus_unclassified-0.1147.42e-073.5e-06
speciesEubacterium_hallii-0.1147.55e-073.53e-06
speciesButyrivibrio_unclassified-0.1138.7e-074.03e-06
speciesStreptococcus_infantarius0.1131.05e-064.81e-06
speciesPrevotella_bivia0.1121.09e-064.95e-06
speciesCoprococcus_comes-0.1111.48e-066.65e-06
genusPeptostreptococcus0.1111.54e-066.86e-06
speciesEubacterium_limosum0.111.73e-067.63e-06
orderLactobacillales0.111.93e-068.43e-06
classBacilli0.1092.25e-069.74e-06
speciesStreptococcus_anginosus0.1073.32e-061.42e-05
speciesStreptococcus_mitis_oralis_pneumoniae0.1073.75e-061.59e-05
genusBarnesiella-0.1064.24e-061.77e-05
speciesBarnesiella_intestinihominis-0.1064.24e-061.77e-05
speciesFusobacterium_mortiferum0.1064.38e-061.81e-05
speciesRuminococcus_lactaris-0.1064.68e-061.92e-05
genusPeptoniphilus0.1055.32e-062.16e-05
speciesCoprococcus_catus-0.1055.58e-062.24e-05
speciesEnterobacter_aerogenes0.1055.61e-062.24e-05
familyBacillales_noname0.1055.82e-062.29e-05
genusGemella0.1055.82e-062.29e-05
speciesAcidaminococcus_intestini0.1046.14e-062.4e-05
speciesMegasphaera_unclassified0.1046.46e-062.5e-05
speciesVeillonella_parvula0.1047.22e-062.77e-05
speciesLachnospiraceae_bacterium_1_4_56FAA0.1037.92e-063.01e-05
genusPseudoflavonifractor-0.1038.59e-063.22e-05
speciesPseudoflavonifractor_capillosus-0.1038.59e-063.22e-05
speciesPorphyromonas_uenonis0.1029.33e-063.47e-05
speciesLactobacillus_mucosae0.1011.12e-054.13e-05
speciesAlistipes_shahii-0.1011.26e-054.61e-05
genusPorphyromonas0.11.36e-054.94e-05
speciesDorea_longicatena-0.11.37e-054.94e-05
speciesRoseburia_intestinalis-0.11.5e-055.36e-05
phylumFirmicutes-0.11.54e-055.47e-05
speciesGemella_morbillorum0.0991.65e-055.81e-05
speciesBifidobacterium_adolescentis-0.0991.77e-056.19e-05
speciesEggerthella_lenta0.0982.18e-057.57e-05
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0982.24e-057.72e-05
speciesStreptococcus_lutetiensis0.0982.34e-058e-05
familyLactobacillaceae0.0972.76e-059.37e-05
speciesEubacterium_dolichum0.0963.18e-050.000107
speciesBifidobacterium_dentium0.0963.28e-050.00011
speciesEubacterium_eligens-0.0963.41e-050.000113
speciesLachnospiraceae_bacterium_5_1_57FAA0.0963.46e-050.000114
familyClostridiales_Family_XI_Incertae_Sedis0.0953.55e-050.000116
genusLactobacillus0.0954.11e-050.000134
genusCoprobacter-0.0944.29e-050.000138
speciesCoprobacter_fastidiosus-0.0944.29e-050.000138
speciesEnterobacteria_phage_HK5440.0944.89e-050.000156
speciesAnaerostipes_hadrus-0.0935.52e-050.000175
familyPeptostreptococcaceae0.0935.68e-050.000178
speciesPrevotella_buccae0.0935.68e-050.000178
genusRuminococcaceae_noname-0.0936.11e-050.000188
speciesRuminococcaceae_bacterium_D16-0.0936.11e-050.000188
speciesSubdoligranulum_sp_4_3_54A2FAA0.0926.4e-050.000196
speciesClostridium_bartlettii0.0926.92e-050.000211
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0927.36e-050.000223
speciesParaprevotella_unclassified-0.0918.77e-050.000264
genusDorea-0.090.0001010.000302
speciesCoprobacillus_sp_D60.090.0001040.000309
genusParaprevotella-0.090.0001060.000313
speciesBacteroides_nordii0.0890.0001180.000346
speciesStreptococcus_thermophilus-0.0890.0001190.000347
speciesAnaerotruncus_colihominis0.0880.0001320.000382
speciesClostridium_leptum-0.0880.0001340.000386
speciesLachnospiraceae_bacterium_2_1_46FAA0.0870.0001520.000435
speciesAlistipes_putredinis-0.0870.0001610.000458
speciesWeissella_cibaria0.0870.0001730.000489
speciesBacteroides_thetaiotaomicron0.0860.0001820.000511
speciesBacteroides_pectinophilus-0.0860.0001880.000525
speciesBilophila_unclassified0.0860.0001950.000541
familyMyoviridae0.0860.0002060.000569
orderBacillales0.0860.0002110.000578
speciesParaprevotella_xylaniphila-0.0860.0002120.000578
speciesBifidobacterium_pseudocatenulatum0.0850.0002370.000643
speciesAlistipes_sp_HGB5-0.0850.0002410.00065
familyActinomycetaceae0.0850.0002470.000662
genusBilophila0.0840.0002540.000677
speciesParabacteroides_merdae-0.0840.0002740.000727
genusVeillonella0.0830.0003240.000854
speciesCoprobacillus_sp_29_10.0830.0003380.000886
genusC2likevirus-0.0820.0003940.00103
speciesStreptococcus_australis0.0810.000440.00114
speciesParaprevotella_clara-0.0810.0004820.00124
speciesKlebsiella_sp_MS_92_30.0810.0004870.00125
speciesEubacterium_ventriosum-0.080.000520.00133
genusPeptostreptococcaceae_noname0.080.000540.00137
speciesC2likevirus_unclassified-0.0790.0005910.00149
speciesLactobacillus_sanfranciscensis0.0790.0005950.00149
speciesStreptococcus_salivarius0.0790.0006220.00155
genusActinomyces0.0780.0006990.00174
speciesLactobacillus_amylovorus0.0780.0007060.00174
classDeltaproteobacteria0.0780.0007430.00181
orderDesulfovibrionales0.0780.0007430.00181
familyDesulfovibrionaceae0.0780.0007430.00181
genusCampylobacter0.0780.0007890.00191
speciesClostridium_sp_ATCC_BAA_4420.0770.0008050.00194
speciesPrevotella_stercorea0.0770.0008560.00205
speciesErysipelotrichaceae_bacterium_6_1_450.0760.0009570.00228
speciesCoprococcus_eutactus-0.0760.0009730.0023
familyBacteroidaceae0.0760.0009790.0023
genusBacteroides0.0760.0009790.0023
speciesPorphyromonas_asaccharolytica0.0760.001030.00241
familyRikenellaceae-0.0760.001050.00243
genusAlistipes-0.0760.001050.00243
genusOdoribacter-0.0750.00110.00253
genusRoseburia-0.0750.001120.00257
speciesEubacterium_biforme-0.0750.001170.00267
speciesOdoribacter_splanchnicus-0.0750.001190.0027
classEpsilonproteobacteria0.0750.00120.0027
orderCampylobacterales0.0750.00120.0027
familyCampylobacteraceae0.0740.001360.00304
speciesButyrivibrio_crossotus-0.0730.001510.00336
phylumVerrucomicrobia-0.0730.001560.00338
classVerrucomicrobiae-0.0730.001560.00338
orderVerrucomicrobiales-0.0730.001560.00338
familyVerrucomicrobiaceae-0.0730.001560.00338
genusAkkermansia-0.0730.001560.00338
speciesAkkermansia_muciniphila-0.0730.001560.00338
speciesPeptostreptococcus_anaerobius0.0730.001580.00339
speciesMitsuokella_unclassified-0.0730.001580.00339
familySutterellaceae-0.0730.001690.00361
familyStreptococcaceae0.0720.001850.00392
genusMethanobrevibacter-0.0720.001850.00392
classErysipelotrichia0.0720.00190.00397
orderErysipelotrichales0.0720.00190.00397
familyErysipelotrichaceae0.0720.00190.00397
speciesMethanobrevibacter_smithii-0.0720.001930.00401
familyVeillonellaceae0.0710.0020.00414
speciesBilophila_wadsworthia0.0710.002250.00464
genusProteus0.070.00230.00472
genusAdlercreutzia-0.070.002570.00523
speciesAdlercreutzia_equolifaciens-0.070.002570.00523
speciesMegamonas_unclassified0.070.002620.00531
genusMegamonas0.0690.002780.00561
speciesBacteroides_stercoris0.0690.002810.00564
classMethanobacteria-0.0690.002980.00591
orderMethanobacteriales-0.0690.002980.00591
familyMethanobacteriaceae-0.0690.002980.00591
speciesLactobacillus_crispatus0.0680.003110.00614
familySiphoviridae-0.0680.003410.00671
genusStreptococcus0.0680.003480.00682
speciesBifidobacterium_angulatum-0.0670.003520.00687
speciesCollinsella_aerofaciens-0.0670.00360.00699
genusClostridiaceae_noname0.0670.003850.00742
speciesClostridiaceae_bacterium_JC1180.0670.003850.00742
speciesRuminococcus_champanellensis-0.0670.003940.00756
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0660.004150.00793
genusMitsuokella-0.0650.004770.00908
speciesParabacteroides_unclassified0.0650.004990.00946
familyOscillospiraceae-0.0650.005070.00953
genusOscillibacter-0.0650.005070.00953
phylumEuryarchaeota-0.0650.005170.00968
speciesOdoribacter_laneus0.0640.005410.0101
speciesDorea_formicigenerans-0.0630.006050.0112
speciesOscillibacter_unclassified-0.0630.006230.0115
genusPrevotella0.0630.006420.0118
genusAcidaminococcus0.0630.006540.012
speciesBacteroides_sp_3_1_190.0620.006880.0126
genusPhascolarctobacterium-0.0610.007820.0142
speciesPhascolarctobacterium_succinatutens-0.0610.007820.0142
speciesHaemophilus_paraphrohaemolyticus0.060.009120.0165
speciesRuminococcus_obeum-0.060.009240.0166
speciesRuminococcus_sp_5_1_39BFAA-0.060.009270.0166
speciesOdoribacter_unclassified-0.0590.01110.0198
speciesRuminococcus_torques0.0590.01130.0201
speciesClostridium_asparagiforme0.0580.01220.0216
speciesParabacteroides_sp_D13-0.0580.01270.0225
genusCollinsella-0.0570.0130.0229
speciesPropionibacterium_freudenreichii-0.0570.01390.0244
speciesPeptostreptococcus_stomatis0.0570.01440.0252
speciesLactococcus_phage_jm2-0.0560.01570.0273
speciesLactobacillus_oris0.0550.01770.0307
genusRuminococcus-0.0540.01860.0322
speciesVeillonella_atypica0.0540.01940.0334
speciesDesulfovibrio_piger-0.0530.02150.0368
speciesBacteroides_plebeius0.0530.02150.0368
speciesAcidaminococcus_fermentans0.0530.02220.0378
speciesBacteroides_salanitronis-0.0520.02530.043
orderActinomycetales0.0510.0270.0457
speciesProteus_mirabilis0.0510.02730.046
speciesAlistipes_finegoldii-0.0510.02750.0462
orderBurkholderiales-0.0510.02770.0462
speciesClostridium_sp_L2_50-0.0510.02770.0462
familyLachnospiraceae-0.0510.02840.0472
speciesLactobacillus_plantarum0.0510.02890.0479
speciesStreptococcus_pasteurianus0.050.02950.0487
speciesBacteroides_intestinalis0.050.03010.0495
speciesParabacteroides_johnsonii0.0490.03270.0536
speciesBacteroides_clarus0.0490.0360.0588
speciesMegamonas_rupellensis0.0480.03610.0588
genusSutterellaceae_unclassified-0.0480.03760.061
speciesStreptococcus_gordonii0.0470.04040.0653
classBetaproteobacteria-0.0470.04080.0657
speciesParabacteroides_goldsteinii0.0470.04140.0665
speciesKlebsiella_phage_KP36-0.0460.04850.0773
speciesMegamonas_hypermegale0.0460.04850.0773
speciesLactobacillus_rhamnosus-0.0450.05140.0817
speciesLachnospiraceae_bacterium_1_1_57FAA0.0450.05170.0819
speciesBlautia_hydrogenotrophica-0.0450.05230.0826
speciesLactobacillus_vaginalis0.0450.05270.0829
speciesVeillonella_dispar0.0450.05320.0834
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0440.05570.0871
genusButyricicoccus0.0440.05640.0876
speciesButyricicoccus_pullicaecorum0.0440.05640.0876
speciesBacteroides_salyersiae0.0440.0580.0893
genusCatenibacterium-0.0440.05810.0893
speciesCatenibacterium_mitsuokai-0.0440.05810.0893
speciesRoseburia_unclassified-0.0430.06170.0946
speciesMegasphaera_elsdenii0.0430.06210.0949
speciesVeillonella_unclassified0.0430.06250.0952
speciesRuminococcus_sp_JC3040.0430.0630.0956
orderAeromonadales0.0430.06390.0967
speciesBacteroides_xylanisolvens0.0430.06430.097
genusPropionibacterium-0.0430.06560.0986
genusLachnospiraceae_noname0.0420.06790.102
orderCaudovirales-0.0420.07010.105
speciesStreptococcus_mutans0.0410.07330.109
speciesErysipelotrichaceae_bacterium_21_30.0410.07510.111
genusAnaerotruncus-0.0410.07520.111
speciesRoseburia_inulinivorans-0.0410.07580.112
genusBurkholderiales_noname0.0410.07610.112
speciesBurkholderiales_bacterium_1_1_470.0410.07610.112
speciesBacteroides_sp_2_1_22-0.0410.07810.114
speciesBacteroides_barnesiae-0.040.08060.117
familyBurkholderiales_noname0.040.08130.118
classNegativicutes0.040.08240.119
orderSelenomonadales0.040.08240.119
speciesCollinsella_tanakaei0.040.08470.122
familyPropionibacteriaceae-0.040.08550.123
speciesLactococcus_phage_phi7-0.040.08690.124
speciesLactobacillus_fermentum0.0390.09420.134
speciesLactococcus_phage_P680-0.0390.09480.135
speciesStreptococcus_sanguinis0.0380.09730.138
speciesLeuconostoc_lactis0.0380.1010.143
phylumViruses_noname-0.0380.1020.143
classViruses_noname-0.0380.1020.143
familyAcidaminococcaceae-0.0370.1050.147
speciesDorea_unclassified-0.0370.1080.151
speciesLactobacillus_gasseri0.0370.1110.155
speciesBacteroides_coprocola0.0370.1120.155
genusSlackia0.0370.1130.156
speciesLactococcus_phage_bIL67-0.0370.1140.157
speciesAlistipes_onderdonkii-0.0360.1150.158
genusAcidaminococcaceae_unclassified-0.0360.1240.17
genusTunalikevirus-0.0360.1250.171
speciesMethanobrevibacter_unclassified-0.0350.1260.172
speciesBacteroides_oleiciplenus0.0350.1270.173
speciesCampylobacter_concisus0.0350.130.176
speciesBifidobacterium_animalis-0.0350.130.176
speciesAggregatibacter_segnis0.0350.1330.179
genusLeuconostoc0.0350.1340.18
genusErysipelotrichaceae_noname0.0350.1350.181
genusParvimonas0.0350.1360.181
speciesParvimonas_unclassified0.0340.1360.181
speciesBifidobacterium_breve0.0340.1370.182
genusAggregatibacter0.0340.1380.183
speciesEggerthella_sp_1_3_56FAA-0.0340.1390.184
genusLambdalikevirus0.0340.140.184
speciesBacteroides_sp_4_3_47FAA0.0340.140.184
speciesLactobacillus_acidophilus-0.0320.1610.211
speciesErysipelotrichaceae_bacterium_3_1_530.0320.1670.218
speciesStreptococcus_vestibularis0.0320.1670.218
speciesOscillibacter_sp_KLE_1745-0.0320.1680.218
speciesRothia_mucilaginosa0.0320.170.22
speciesBacteroides_caccae0.0320.170.22
genusParasutterella0.0310.1760.226
speciesParasutterella_excrementihominis0.0310.1760.226
speciesTuricibacter_unclassified-0.0290.2040.262
genusHoldemania0.0280.2220.284
familyMicrococcaceae0.0280.2240.286
genusRothia0.0280.2270.288
speciesBifidobacterium_catenulatum-0.0280.2270.288
speciesLactobacillus_ruminis-0.0280.2310.292
speciesPrevotella_copri0.0270.2430.307
genusMyoviridae_noname0.0260.2580.325
speciesRuminococcus_bromii-0.0260.2670.335
familyPodoviridae0.0260.270.337
genusTuricibacter-0.0260.270.337
orderPseudomonadales0.0250.2730.34
speciesHoldemania_filiformis0.0250.280.348
speciesLactococcus_lactis-0.0240.2960.367
speciesSutterella_parvirubra-0.0240.3030.374
speciesPeptostreptococcaceae_noname_unclassified-0.0240.3060.377
speciesCollinsella_intestinalis0.0220.3410.419
speciesAlistipes_indistinctus-0.0220.3440.422
speciesEubacterium_cylindroides-0.0210.3570.437
speciesParabacteroides_distasonis0.0210.3630.443
speciesBacteroides_finegoldii0.0210.3750.456
genusStaphylococcus-0.0190.4040.489
speciesParabacteroides_sp_20_30.0190.4040.489
speciesOlsenella_unclassified-0.0180.4250.513
familyPorphyromonadaceae-0.0180.4260.513
speciesRuminococcus_callidus-0.0180.4450.534
speciesHoldemania_unclassified-0.0180.4460.534
phylumActinobacteria0.0170.4640.553
classActinobacteria0.0170.4640.553
speciesHaemophilus_parainfluenzae0.0170.4730.562
speciesOscillibacter_sp_KLE_1728-0.0160.4780.567
genusLactococcus0.0160.4890.577
speciesDesulfovibrio_desulfuricans0.0160.4890.577
orderPasteurellales0.0160.4970.584
familyPasteurellaceae0.0160.4970.584
genusHaemophilus0.0150.5050.591
familyPrevotellaceae-0.0150.510.596
genusOlsenella-0.0150.5160.601
genusSiphoviridae_noname-0.0150.5180.602
speciesTuricibacter_sanguinis-0.0150.520.603
speciesHoldemania_sp_AP20.0150.530.613
speciesLactobacillus_casei_paracasei0.0140.5460.629
speciesBacteroides_coprophilus-0.0140.5460.629
speciesClostridium_spiroforme0.0140.5530.635
genusMethanosphaera-0.0140.5580.638
speciesMethanosphaera_stadtmanae-0.0140.5580.638
genusAnaerostipes-0.0130.5640.643
genusCoriobacteriaceae_noname0.0130.5720.651
speciesSlackia_piriformis0.0130.5760.654
speciesBacteroides_ovatus0.0120.5920.67
speciesBacteroides_vulgatus0.0120.5940.671
speciesDialister_invisus0.0120.6150.693
genusOxalobacter-0.0110.6250.701
speciesOxalobacter_formigenes-0.0110.6250.701
speciesBacteroides_sp_1_1_6-0.010.6590.737
genusParabacteroides0.010.6630.74
speciesLactobacillus_reuteri-0.010.6760.753
speciesStreptococcus_phage_Sfi210.010.6790.754
familyViruses_noname0.0090.6830.755
genusViruses_noname0.0090.6830.755
genusActinobacillus0.0090.6860.755
speciesActinobacillus_unclassified0.0090.6860.755
speciesCoriobacteriaceae_bacterium_phI0.0090.7020.771
speciesMitsuokella_multacida0.0090.7060.773
speciesBacteroides_cellulosilyticus0.0090.7110.777
familyOxalobacteraceae-0.0090.7130.777
speciesDialister_succinatiphilus-0.0080.7220.784
familyStaphylococcaceae-0.0080.7230.784
speciesHaemophilus_sputorum0.0080.7310.791
speciesBacteroides_dorei-0.0080.7390.798
speciesBacteroides_massiliensis0.0070.7590.817
speciesLactococcus_phage_936_sensu_lato-0.0070.760.817
speciesBifidobacterium_longum-0.0070.7650.821
speciesEubacterium_sp_3_1_310.0070.7780.833
speciesBacteroides_eggerthii-0.0060.7960.85
familySuccinivibrionaceae-0.0060.8090.862
speciesAlistipes_unclassified-0.0060.8120.863
genusGordonibacter0.0050.8230.871
speciesGordonibacter_pamelaeae0.0050.8230.871
speciesBacteroides_fluxus0.0050.8280.874
speciesBacteroides_faecis0.0050.8450.89
speciesMegamonas_funiformis0.0040.8520.894
orderBifidobacteriales0.0040.8540.894
familyBifidobacteriaceae0.0040.8540.894
speciesStreptococcus_parasanguinis0.0040.8710.91
orderCoriobacteriales0.0030.8810.916
familyCoriobacteriaceae0.0030.8810.916
speciesAcidaminococcus_unclassified0.0030.8850.918
speciesAlistipes_sp_AP11-0.0030.8960.927
speciesLactobacillus_delbrueckii0.0030.9060.936
genusSuccinatimonas-0.0030.9130.939
speciesSuccinatimonas_hippei-0.0030.9130.939
genusDialister-0.0020.9190.943
orderViruses_noname-0.0020.9380.956
phylumBacteroidetes-0.0020.940.956
classBacteroidia-0.0020.9410.956
orderBacteroidales-0.0020.9410.956
speciesBifidobacterium_bifidum0.0020.9420.956
speciesClostridium_sp_KLE_1755-0.0010.9540.964
genusButyricimonas-0.0010.9560.964
speciesButyricimonas_synergistica-0.0010.9560.964
genusBifidobacterium0.0010.9630.969
genusDesulfovibrio0.0010.9650.969
speciesCollinsella_unclassified-0.0010.9710.973
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.00.9980.998
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.01520168691930.006273290991473.20177904891e-0512584.18288
Type II diabetesDenmark752770.002079217071740.001141540493830.00021811942693119266.31331
Rheumatoid arthritisChina127980.00281685711290.000844656710370.034310919905624278.09351
Type II diabetesChina1831850.004490088961090.003087823167070.1206374834391038634.3237
Liver cirrhosisChina1201140.01391100614830.0006089137621080.1298552700771750458.7994
ObesityDenmark1691230.001640013288390.0004155699044690.1714013850091003232.9881
Type II diabetesSweden53920.001114440221650.001442831456110.7843829429192386980.8297
Colorectal cancerAustria64350.02631443505090.005292194783130.7872603807652483884.0371
Ulcerative colitisSpain78660.0002667658097790.006273290991470.9717386794892973898.0999
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382